@graphty/layout 1.2.9 → 1.3.2

package/dist/src/layouts/force-directed/forceatlas2.js

@@ -1,10 +1,9 @@
-import { getNodesFromGraph } from '../../utils/graph';
-import { _processParams } from '../../utils/params';
-import { rescaleLayout } from '../../utils/rescale';
-import { RandomNumberGenerator } from '../../utils/random';
+import { getNodesFromGraph } from "../../utils/graph";
+import { _processParams } from "../../utils/params";
+import { RandomNumberGenerator } from "../../utils/random";
+import { rescaleLayout } from "../../utils/rescale";
 /**
  * Position nodes using the ForceAtlas2 force-directed algorithm.
- *
  * @param G - Graph
  * @param pos - Initial positions for nodes
  * @param maxIter - Maximum number of iterations
@@ -37,7 +36,9 @@ export function forceatlas2Layout(G, pos = null, maxIter = 100, jitterTolerance
         pos = {};
         posArray = new Array(nodes.length);
         for (let i = 0; i < nodes.length; i++) {
-            posArray[i] = Array(dim).fill(0).map(() => rng.rand() * 2 - 1);
+            posArray[i] = Array(dim)
+                .fill(0)
+                .map(() => rng.rand() * 2 - 1);
             pos[nodes[i]] = posArray[i];
         }
     }
@@ -48,14 +49,14 @@ export function forceatlas2Layout(G, pos = null, maxIter = 100, jitterTolerance
             const nodePos = pos[nodes[i]];
             posArray[i] = new Array(dim);
             for (let d = 0; d < dim; d++) {
-                posArray[i][d] = d < nodePos.length ? nodePos[d] : (rng.rand() * 2 - 1);
+                posArray[i][d] = d < nodePos.length ? nodePos[d] : rng.rand() * 2 - 1;
             }
         }
     }
     else {
         // Some nodes don't have positions, initialize within the range of existing positions
-        let minPos = Array(dim).fill(Number.POSITIVE_INFINITY);
-        let maxPos = Array(dim).fill(Number.NEGATIVE_INFINITY);
+        const minPos = Array(dim).fill(Number.POSITIVE_INFINITY);
+        const maxPos = Array(dim).fill(Number.NEGATIVE_INFINITY);
         // Find min and max of existing positions
         for (const node in pos) {
             const nodePos = pos[node];
@@ -80,11 +81,13 @@ export function forceatlas2Layout(G, pos = null, maxIter = 100, jitterTolerance
                 const nodePos = pos[node];
                 posArray[i] = new Array(dim);
                 for (let d = 0; d < dim; d++) {
-                    posArray[i][d] = d < nodePos.length ? nodePos[d] : (rng.rand() * 2 - 1);
+                    posArray[i][d] = d < nodePos.length ? nodePos[d] : rng.rand() * 2 - 1;
                 }
             }
             else {
-                posArray[i] = Array(dim).fill(0).map((_, d) => minPos[d] + rng.rand() * (maxPos[d] - minPos[d]));
+                posArray[i] = Array(dim)
+                    .fill(0)
+                    .map((_, d) => minPos[d] + rng.rand() * (maxPos[d] - minPos[d]));
                 pos[node] = posArray[i];
             }
         }
@@ -97,18 +100,21 @@ export function forceatlas2Layout(G, pos = null, maxIter = 100, jitterTolerance
     // Set node masses and sizes
     for (let i = 0; i < nodes.length; i++) {
         const node = nodes[i];
-        mass[i] = nodeMass && nodeMass[node] ?
-            nodeMass[node] :
-            (Array.isArray(graph) ? 1 : getNodeDegree(graph, node) + 1);
+        mass[i] =
+            nodeMass && nodeMass[node] ? nodeMass[node] : Array.isArray(graph) ? 1 : getNodeDegree(graph, node) + 1;
         size[i] = nodeSize && nodeSize[node] ? nodeSize[node] : 1;
     }
     // Create adjacency matrix
     const n = nodes.length;
-    const A = Array(n).fill(0).map(() => Array(n).fill(0));
+    const A = Array(n)
+        .fill(0)
+        .map(() => Array(n).fill(0));
     // Populate adjacency matrix with edge weights
     const edges = Array.isArray(graph) ? [] : graph.edges();
     const nodeIndices = {};
-    nodes.forEach((node, i) => { nodeIndices[node] = i; });
+    nodes.forEach((node, i) => {
+        nodeIndices[node] = i;
+    });
     for (const [source, target] of edges) {
         const i = nodeIndices[source];
         const j = nodeIndices[target];
@@ -121,14 +127,20 @@ export function forceatlas2Layout(G, pos = null, maxIter = 100, jitterTolerance
         A[j][i] = edgeWeight; // For undirected graphs
     }
     // Initialize force arrays
-    const gravities = Array(n).fill(0).map(() => Array(dim).fill(0));
-    const attraction = Array(n).fill(0).map(() => Array(dim).fill(0));
-    const repulsion = Array(n).fill(0).map(() => Array(dim).fill(0));
+    const gravities = Array(n)
+        .fill(0)
+        .map(() => Array(dim).fill(0));
+    const attraction = Array(n)
+        .fill(0)
+        .map(() => Array(dim).fill(0));
+    const repulsion = Array(n)
+        .fill(0)
+        .map(() => Array(dim).fill(0));
     // Simulation parameters
     let speed = 1;
     let speedEfficiency = 1;
-    let swing = 1;
-    let traction = 1;
+    const swing = 1;
+    const traction = 1;
     // Helper function to estimate factor for force scaling
     function estimateFactor(n, swing, traction, speed, speedEfficiency, jitterTolerance) {
         // Optimal jitter parameters
@@ -137,7 +149,7 @@ export function forceatlas2Layout(G, pos = null, maxIter = 100, jitterTolerance
         const maxJitter = 10;
         const minSpeedEfficiency = 0.05;
         // Estimate jitter based on current state
-        const other = Math.min(maxJitter, optJitter * traction / (n * n));
+        const other = Math.min(maxJitter, (optJitter * traction) / (n * n));
         let jitter = jitterTolerance * Math.max(minJitter, other);
         // Adjust speed efficiency based on swing/traction ratio
         if (swing / traction > 2.0) {
@@ -147,9 +159,7 @@ export function forceatlas2Layout(G, pos = null, maxIter = 100, jitterTolerance
             jitter = Math.max(jitter, jitterTolerance);
         }
         // Calculate target speed
-        let targetSpeed = swing === 0 ?
-            Number.POSITIVE_INFINITY :
-            jitter * speedEfficiency * traction / swing;
+        const targetSpeed = swing === 0 ? Number.POSITIVE_INFINITY : (jitter * speedEfficiency * traction) / swing;
         // Further adjust speed efficiency
         if (swing > jitter * traction) {
             if (speedEfficiency > minSpeedEfficiency) {
@@ -175,19 +185,27 @@ export function forceatlas2Layout(G, pos = null, maxIter = 100, jitterTolerance
             }
         }
         // Compute pairwise differences and distances
-        const diff = Array(n).fill(0).map(() => Array(n).fill(0).map(() => Array(dim).fill(0)));
-        const distance = Array(n).fill(0).map(() => Array(n).fill(0));
+        const diff = Array(n)
+            .fill(0)
+            .map(() => Array(n)
+            .fill(0)
+            .map(() => Array(dim).fill(0)));
+        const distance = Array(n)
+            .fill(0)
+            .map(() => Array(n).fill(0));
         for (let i = 0; i < n; i++) {
             for (let j = 0; j < n; j++) {
-                if (i === j)
+                if (i === j) {
                     continue;
+                }
                 for (let d = 0; d < dim; d++) {
                     diff[i][j][d] = posArray[i][d] - posArray[j][d];
                 }
                 distance[i][j] = Math.sqrt(diff[i][j].reduce((sum, d) => sum + d * d, 0));
                 // Prevent division by zero
-                if (distance[i][j] < 0.01)
+                if (distance[i][j] < 0.01) {
                     distance[i][j] = 0.01;
+                }
             }
         }
         // Calculate attraction forces
@@ -195,10 +213,11 @@ export function forceatlas2Layout(G, pos = null, maxIter = 100, jitterTolerance
             // Logarithmic attraction model
             for (let i = 0; i < n; i++) {
                 for (let j = 0; j < n; j++) {
-                    if (i === j || A[i][j] === 0)
+                    if (i === j || A[i][j] === 0) {
                         continue;
+                    }
                     const dist = distance[i][j];
-                    const factor = -Math.log(1 + dist) / dist * A[i][j];
+                    const factor = (-Math.log(1 + dist) / dist) * A[i][j];
                     for (let d = 0; d < dim; d++) {
                         const force = factor * diff[i][j][d];
                         attraction[i][d] += force;
@@ -210,8 +229,9 @@ export function forceatlas2Layout(G, pos = null, maxIter = 100, jitterTolerance
             // Linear attraction model
             for (let i = 0; i < n; i++) {
                 for (let j = 0; j < n; j++) {
-                    if (i === j || A[i][j] === 0)
+                    if (i === j || A[i][j] === 0) {
                         continue;
+                    }
                     for (let d = 0; d < dim; d++) {
                         const force = -diff[i][j][d] * A[i][j];
                         attraction[i][d] += force;
@@ -230,8 +250,9 @@ export function forceatlas2Layout(G, pos = null, maxIter = 100, jitterTolerance
         // Calculate repulsion forces
         for (let i = 0; i < n; i++) {
             for (let j = 0; j < n; j++) {
-                if (i === j)
+                if (i === j) {
                     continue;
+                }
                 let dist = distance[i][j];
                 // Adjust distance for node sizes if needed
                 if (adjustSizes) {
@@ -278,7 +299,9 @@ export function forceatlas2Layout(G, pos = null, maxIter = 100, jitterTolerance
             }
         }
         // Calculate total forces and update positions
-        const update = Array(n).fill(0).map(() => Array(dim).fill(0));
+        const update = Array(n)
+            .fill(0)
+            .map(() => Array(dim).fill(0));
         let totalSwing = 0;
         let totalTraction = 0;
         for (let i = 0; i < n; i++) {
@@ -306,7 +329,7 @@ export function forceatlas2Layout(G, pos = null, maxIter = 100, jitterTolerance
                 const df = Math.sqrt(update[i].reduce((sum, val) => sum + val * val, 0));
                 const swinging = mass[i] * df;
                 // Determine scaling factor with size adjustments
-                factor = 0.1 * speed / (1 + Math.sqrt(speed * swinging));
+                factor = (0.1 * speed) / (1 + Math.sqrt(speed * swinging));
                 factor = Math.min(factor * df, 10) / df;
             }
             else {

package/dist/src/layouts/force-directed/forceatlas2.js.map

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package/dist/src/layouts/force-directed/fruchterman-reingold.d.ts

@@ -1,19 +1,18 @@
 /**
  * Fruchterman-Reingold force-directed layout algorithm
  */
-import { Graph, Node, PositionMap } from '../../types';
+import { Graph, Node, PositionMap } from "../../types";
 /**
  * Position nodes using Fruchterman-Reingold force-directed algorithm.
- *
- * @param {Object} G - Graph or list of nodes
- * @param {number} k - Optimal distance between nodes
- * @param {Object} pos - Initial positions for nodes
- * @param {Array} fixed - Nodes to keep fixed at initial position
- * @param {number} iterations - Maximum number of iterations
- * @param {number} scale - Scale factor for positions
- * @param {Array|null} center - Coordinate pair around which to center the layout
- * @param {number} dim - Dimension of layout
- * @param {number} seed - Random seed for initial positions
- * @returns {Object} Positions dictionary keyed by node
+ * @param G - Graph or list of nodes
+ * @param k - Optimal distance between nodes
+ * @param pos - Initial positions for nodes
+ * @param fixed - Nodes to keep fixed at initial position
+ * @param iterations - Maximum number of iterations
+ * @param scale - Scale factor for positions
+ * @param center - Coordinate pair around which to center the layout
+ * @param dim - Dimension of layout
+ * @param seed - Random seed for initial positions
+ * @returns Positions dictionary keyed by node
  */
 export declare function fruchtermanReingoldLayout(G: Graph, k?: number | null, pos?: PositionMap | null, fixed?: Node[] | null, iterations?: number, scale?: number, center?: number[] | null, dim?: number, seed?: number | null): PositionMap;

package/dist/src/layouts/force-directed/fruchterman-reingold.js

@@ -1,27 +1,26 @@
 /**
  * Fruchterman-Reingold force-directed layout algorithm
  */
-import { _processParams } from '../../utils/params';
-import { getNodesFromGraph, getEdgesFromGraph } from '../../utils/graph';
-import { RandomNumberGenerator } from '../../utils/random';
-import { rescaleLayout } from '../../utils/rescale';
+import { getEdgesFromGraph, getNodesFromGraph } from "../../utils/graph";
+import { _processParams } from "../../utils/params";
+import { RandomNumberGenerator } from "../../utils/random";
+import { rescaleLayout } from "../../utils/rescale";
 /**
  * Position nodes using Fruchterman-Reingold force-directed algorithm.
- *
- * @param {Object} G - Graph or list of nodes
- * @param {number} k - Optimal distance between nodes
- * @param {Object} pos - Initial positions for nodes
- * @param {Array} fixed - Nodes to keep fixed at initial position
- * @param {number} iterations - Maximum number of iterations
- * @param {number} scale - Scale factor for positions
- * @param {Array|null} center - Coordinate pair around which to center the layout
- * @param {number} dim - Dimension of layout
- * @param {number} seed - Random seed for initial positions
- * @returns {Object} Positions dictionary keyed by node
+ * @param G - Graph or list of nodes
+ * @param k - Optimal distance between nodes
+ * @param pos - Initial positions for nodes
+ * @param fixed - Nodes to keep fixed at initial position
+ * @param iterations - Maximum number of iterations
+ * @param scale - Scale factor for positions
+ * @param center - Coordinate pair around which to center the layout
+ * @param dim - Dimension of layout
+ * @param seed - Random seed for initial positions
+ * @returns Positions dictionary keyed by node
  */
 export function fruchtermanReingoldLayout(G, k = null, pos = null, fixed = null, iterations = 50, scale = 1, center = null, dim = 2, seed = null) {
     const processed = _processParams(G, center, dim);
-    let graph = processed.G;
+    const graph = processed.G;
     center = processed.center;
     const nodes = getNodesFromGraph(graph);
     const edges = getEdgesFromGraph(graph);
@@ -107,8 +106,9 @@ export function fruchtermanReingoldLayout(G, k = null, pos = null, fixed = null,
         }
         // Update positions
         for (const node of nodes) {
-            if (fixedNodes.has(node))
+            if (fixedNodes.has(node)) {
                 continue;
+            }
             // Calculate displacement magnitude
             const magnitude = Math.sqrt(displacement[node].reduce((sum, d) => sum + d * d, 0));
             // Limit maximum displacement by temperature

package/dist/src/layouts/force-directed/fruchterman-reingold.js.map

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package/dist/src/layouts/force-directed/index.d.ts

@@ -1,8 +1,8 @@
 /**
  * Force-directed layout algorithms
  */
-export { springLayout } from './spring';
-export { fruchtermanReingoldLayout } from './fruchterman-reingold';
-export { kamadaKawaiLayout } from './kamada-kawai';
-export { forceatlas2Layout } from './forceatlas2';
-export { arfLayout } from './arf';
+export { arfLayout } from "./arf";
+export { forceatlas2Layout } from "./forceatlas2";
+export { fruchtermanReingoldLayout } from "./fruchterman-reingold";
+export { kamadaKawaiLayout } from "./kamada-kawai";
+export { springLayout } from "./spring";

package/dist/src/layouts/force-directed/index.js

@@ -1,9 +1,9 @@
 /**
  * Force-directed layout algorithms
  */
-export { springLayout } from './spring';
-export { fruchtermanReingoldLayout } from './fruchterman-reingold';
-export { kamadaKawaiLayout } from './kamada-kawai';
-export { forceatlas2Layout } from './forceatlas2';
-export { arfLayout } from './arf';
+export { arfLayout } from "./arf";
+export { forceatlas2Layout } from "./forceatlas2";
+export { fruchtermanReingoldLayout } from "./fruchterman-reingold";
+export { kamadaKawaiLayout } from "./kamada-kawai";
+export { springLayout } from "./spring";
 //# sourceMappingURL=index.js.map

package/dist/src/layouts/force-directed/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../../src/layouts/force-directed/index.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,EAAE,SAAS,EAAE,MAAM,OAAO,CAAC;AAClC,OAAO,EAAE,iBAAiB,EAAE,MAAM,eAAe,CAAC;AAClD,OAAO,EAAE,yBAAyB,EAAE,MAAM,wBAAwB,CAAC;AACnE,OAAO,EAAE,iBAAiB,EAAE,MAAM,gBAAgB,CAAC;AACnD,OAAO,EAAE,YAAY,EAAE,MAAM,UAAU,CAAC"}

package/dist/src/layouts/force-directed/kamada-kawai.d.ts

@@ -1,8 +1,7 @@
-import type { Graph, PositionMap } from '../../types';
-import type { DistanceMap } from '../../algorithms/optimization';
+import type { DistanceMap } from "../../algorithms/optimization";
+import type { Graph, PositionMap } from "../../types";
 /**
  * Position nodes using Kamada-Kawai path-length cost-function.
- *
  * @param G - NetworkX graph or list of nodes
  * @param dist - A two-level dictionary of optimal distances between nodes
  * @param pos - Initial positions for nodes

package/dist/src/layouts/force-directed/kamada-kawai.js

@@ -1,11 +1,10 @@
-import { getNodesFromGraph } from '../../utils/graph';
-import { _processParams } from '../../utils/params';
-import { rescaleLayout } from '../../utils/rescale';
-import { circularLayout } from '../geometric/circular';
-import { _computeShortestPathDistances, _kamadaKawaiSolve } from '../../algorithms/optimization';
+import { _computeShortestPathDistances, _kamadaKawaiSolve } from "../../algorithms/optimization";
+import { getNodesFromGraph } from "../../utils/graph";
+import { _processParams } from "../../utils/params";
+import { rescaleLayout } from "../../utils/rescale";
+import { circularLayout } from "../geometric/circular";
 /**
  * Position nodes using Kamada-Kawai path-length cost-function.
- *
  * @param G - NetworkX graph or list of nodes
  * @param dist - A two-level dictionary of optimal distances between nodes
  * @param pos - Initial positions for nodes
@@ -15,7 +14,7 @@ import { _computeShortestPathDistances, _kamadaKawaiSolve } from '../../algorith
  * @param dim - Dimension of layout
  * @returns Positions dictionary keyed by node
  */
-export function kamadaKawaiLayout(G, dist = null, pos = null, weight = 'weight', scale = 1, center = null, dim = 2) {
+export function kamadaKawaiLayout(G, dist = null, pos = null, weight = "weight", scale = 1, center = null, dim = 2) {
     const processed = _processParams(G, center, dim);
     const graph = processed.G;
     center = processed.center;
@@ -30,19 +29,22 @@ export function kamadaKawaiLayout(G, dist = null, pos = null, weight = 'weight',
     if (!dist) {
         // Kamada-Kawai requires a proper Graph, not just a list of nodes
         if (Array.isArray(graph)) {
-            throw new Error('Kamada-Kawai layout requires a Graph with edges, not just a list of nodes');
+            throw new Error("Kamada-Kawai layout requires a Graph with edges, not just a list of nodes");
         }
         dist = _computeShortestPathDistances(graph, weight);
     }
     // Convert distances to a matrix
     const nodesArray = Array.from(nodes);
     const nNodes = nodesArray.length;
-    const distMatrix = Array(nNodes).fill(0).map(() => Array(nNodes).fill(1e6));
+    const distMatrix = Array(nNodes)
+        .fill(0)
+        .map(() => Array(nNodes).fill(1e6));
     for (let i = 0; i < nNodes; i++) {
         const nodeI = nodesArray[i];
         distMatrix[i][i] = 0;
-        if (!dist[nodeI])
+        if (!dist[nodeI]) {
             continue;
+        }
         for (let j = 0; j < nNodes; j++) {
             const nodeJ = nodesArray[j];
             if (dist[nodeI][nodeJ] !== undefined) {

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package/dist/src/layouts/force-directed/spring.d.ts

@@ -1,19 +1,18 @@
 /**
  * Spring layout algorithm (Fruchterman-Reingold variant)
  */
-import { Graph, Node, PositionMap } from '../../types';
+import { Graph, Node, PositionMap } from "../../types";
 /**
  * Position nodes using Fruchterman-Reingold force-directed algorithm.
- *
- * @param {Object} G - Graph or list of nodes
- * @param {number} k - Optimal distance between nodes
- * @param {Object} pos - Initial positions for nodes
- * @param {Array} fixed - Nodes to keep fixed at initial position
- * @param {number} iterations - Maximum number of iterations
- * @param {number} scale - Scale factor for positions
- * @param {Array|null} center - Coordinate pair around which to center the layout
- * @param {number} dim - Dimension of layout
- * @param {number} seed - Random seed for initial positions
- * @returns {Object} Positions dictionary keyed by node
+ * @param G - Graph or list of nodes
+ * @param k - Optimal distance between nodes
+ * @param pos - Initial positions for nodes
+ * @param fixed - Nodes to keep fixed at initial position
+ * @param iterations - Maximum number of iterations
+ * @param scale - Scale factor for positions
+ * @param center - Coordinate pair around which to center the layout
+ * @param dim - Dimension of layout
+ * @param seed - Random seed for initial positions
+ * @returns Positions dictionary keyed by node
  */
 export declare function springLayout(G: Graph, k?: number | null, pos?: PositionMap | null, fixed?: Node[] | null, iterations?: number, scale?: number, center?: number[] | null, dim?: number, seed?: number | null): PositionMap;

package/dist/src/layouts/force-directed/spring.js

@@ -1,20 +1,19 @@
 /**
  * Spring layout algorithm (Fruchterman-Reingold variant)
  */
-import { fruchtermanReingoldLayout } from './fruchterman-reingold';
+import { fruchtermanReingoldLayout } from "./fruchterman-reingold";
 /**
  * Position nodes using Fruchterman-Reingold force-directed algorithm.
- *
- * @param {Object} G - Graph or list of nodes
- * @param {number} k - Optimal distance between nodes
- * @param {Object} pos - Initial positions for nodes
- * @param {Array} fixed - Nodes to keep fixed at initial position
- * @param {number} iterations - Maximum number of iterations
- * @param {number} scale - Scale factor for positions
- * @param {Array|null} center - Coordinate pair around which to center the layout
- * @param {number} dim - Dimension of layout
- * @param {number} seed - Random seed for initial positions
- * @returns {Object} Positions dictionary keyed by node
+ * @param G - Graph or list of nodes
+ * @param k - Optimal distance between nodes
+ * @param pos - Initial positions for nodes
+ * @param fixed - Nodes to keep fixed at initial position
+ * @param iterations - Maximum number of iterations
+ * @param scale - Scale factor for positions
+ * @param center - Coordinate pair around which to center the layout
+ * @param dim - Dimension of layout
+ * @param seed - Random seed for initial positions
+ * @returns Positions dictionary keyed by node
  */
 export function springLayout(G, k = null, pos = null, fixed = null, iterations = 50, scale = 1, center = null, dim = 2, seed = null) {
     // Legacy compatibility alias

package/dist/src/layouts/force-directed/spring.js.map

@@ -1 +1 @@
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package/dist/src/layouts/geometric/circular.d.ts

@@ -1,10 +1,9 @@
 /**
  * Circular layout algorithm
  */
-import { Graph, PositionMap } from '../../types';
+import { Graph, PositionMap } from "../../types";
 /**
  * Position nodes on a circle (2D) or sphere (3D).
- *
  * @param G - Graph or list of nodes
  * @param scale - Scale factor for positions
  * @param center - Coordinate pair around which to center the layout