@graphty/layout 1.2.8 → 1.3.2

package/src/layouts/force-directed/forceatlas2.ts

@@ -1,12 +1,11 @@
-import type { Graph, Node, Edge, PositionMap } from '../../types';
-import { getNodesFromGraph, getEdgesFromGraph } from '../../utils/graph';
-import { _processParams } from '../../utils/params';
-import { rescaleLayout } from '../../utils/rescale';
-import { RandomNumberGenerator } from '../../utils/random';
+import type { Edge, Graph, Node, PositionMap } from "../../types";
+import { getEdgesFromGraph,getNodesFromGraph } from "../../utils/graph";
+import { _processParams } from "../../utils/params";
+import { RandomNumberGenerator } from "../../utils/random";
+import { rescaleLayout } from "../../utils/rescale";
 
 /**
  * Position nodes using the ForceAtlas2 force-directed algorithm.
- * 
  * @param G - Graph
  * @param pos - Initial positions for nodes
  * @param maxIter - Maximum number of iterations
@@ -25,402 +24,417 @@ import { RandomNumberGenerator } from '../../utils/random';
  * @returns Positions dictionary keyed by node
  */
 export function forceatlas2Layout(
-  G: Graph,
-  pos: PositionMap | null = null,
-  maxIter: number = 100,
-  jitterTolerance: number = 1.0,
-  scalingRatio: number = 2.0,
-  gravity: number = 1.0,
-  distributedAction: boolean = false,
-  strongGravity: boolean = false,
-  nodeMass: Record<Node, number> | null = null,
-  nodeSize: Record<Node, number> | null = null,
-  weight: string | null = null,
-  dissuadeHubs: boolean = false,
-  linlog: boolean = false,
-  seed: number | null = null,
-  dim: number = 2
+    G: Graph,
+    pos: PositionMap | null = null,
+    maxIter: number = 100,
+    jitterTolerance: number = 1.0,
+    scalingRatio: number = 2.0,
+    gravity: number = 1.0,
+    distributedAction: boolean = false,
+    strongGravity: boolean = false,
+    nodeMass: Record<Node, number> | null = null,
+    nodeSize: Record<Node, number> | null = null,
+    weight: string | null = null,
+    dissuadeHubs: boolean = false,
+    linlog: boolean = false,
+    seed: number | null = null,
+    dim: number = 2,
 ): PositionMap {
-  const processed = _processParams(G, null, dim);
-  const graph = processed.G;
+    const processed = _processParams(G, null, dim);
+    const graph = processed.G;
 
-  const nodes = getNodesFromGraph(graph);
+    const nodes = getNodesFromGraph(graph);
 
-  if (nodes.length === 0) {
-    return {};
-  }
-
-  // Initialize random number generator
-  const rng = new RandomNumberGenerator(seed ?? undefined);
-
-  // Initialize positions if not provided
-  let posArray: number[][];
-  if (pos === null) {
-    pos = {};
-    posArray = new Array(nodes.length);
-    for (let i = 0; i < nodes.length; i++) {
-      posArray[i] = Array(dim).fill(0).map(() => rng.rand() as number * 2 - 1);
-      pos[nodes[i]] = posArray[i];
-    }
-  } else if (Object.keys(pos).length === nodes.length) {
-    // Use provided positions
-    posArray = new Array(nodes.length);
-    for (let i = 0; i < nodes.length; i++) {
-      const nodePos = pos[nodes[i]];
-      posArray[i] = new Array(dim);
-      for (let d = 0; d < dim; d++) {
-        posArray[i][d] = d < nodePos.length ? nodePos[d] : (rng.rand() as number * 2 - 1);
-      }
-    }
-  } else {
-    // Some nodes don't have positions, initialize within the range of existing positions
-    let minPos = Array(dim).fill(Number.POSITIVE_INFINITY);
-    let maxPos = Array(dim).fill(Number.NEGATIVE_INFINITY);
-
-    // Find min and max of existing positions
-    for (const node in pos) {
-      const nodePos = pos[node];
-      for (let d = 0; d < dim; d++) {
-        if (d < nodePos.length) {
-          minPos[d] = Math.min(minPos[d], nodePos[d]);
-          maxPos[d] = Math.max(maxPos[d], nodePos[d]);
-        }
-      }
+    if (nodes.length === 0) {
+        return {};
     }
 
-    // If min/max are still infinity for some dimensions, use default range
-    for (let d = 0; d < dim; d++) {
-      if (!isFinite(minPos[d]) || !isFinite(maxPos[d])) {
-        minPos[d] = -1;
-        maxPos[d] = 1;
-      }
-    }
+    // Initialize random number generator
+    const rng = new RandomNumberGenerator(seed ?? undefined);
+
+    // Initialize positions if not provided
+    let posArray: number[][];
+    if (pos === null) {
+        pos = {};
+        posArray = new Array(nodes.length);
+        for (let i = 0; i < nodes.length; i++) {
+            posArray[i] = Array(dim)
+                .fill(0)
+                .map(() => (rng.rand() as number) * 2 - 1);
+            pos[nodes[i]] = posArray[i];
+        }
+    } else if (Object.keys(pos).length === nodes.length) {
+        // Use provided positions
+        posArray = new Array(nodes.length);
+        for (let i = 0; i < nodes.length; i++) {
+            const nodePos = pos[nodes[i]];
+            posArray[i] = new Array(dim);
+            for (let d = 0; d < dim; d++) {
+                posArray[i][d] = d < nodePos.length ? nodePos[d] : (rng.rand() as number) * 2 - 1;
+            }
+        }
+    } else {
+        // Some nodes don't have positions, initialize within the range of existing positions
+        const minPos = Array(dim).fill(Number.POSITIVE_INFINITY);
+        const maxPos = Array(dim).fill(Number.NEGATIVE_INFINITY);
+
+        // Find min and max of existing positions
+        for (const node in pos) {
+            const nodePos = pos[node];
+            for (let d = 0; d < dim; d++) {
+                if (d < nodePos.length) {
+                    minPos[d] = Math.min(minPos[d], nodePos[d]);
+                    maxPos[d] = Math.max(maxPos[d], nodePos[d]);
+                }
+            }
+        }
 
-    posArray = new Array(nodes.length);
-    for (let i = 0; i < nodes.length; i++) {
-      const node = nodes[i];
-      if (pos[node]) {
-        const nodePos = pos[node];
-        posArray[i] = new Array(dim);
+        // If min/max are still infinity for some dimensions, use default range
         for (let d = 0; d < dim; d++) {
-          posArray[i][d] = d < nodePos.length ? nodePos[d] : (rng.rand() as number * 2 - 1);
+            if (!isFinite(minPos[d]) || !isFinite(maxPos[d])) {
+                minPos[d] = -1;
+                maxPos[d] = 1;
+            }
         }
-      } else {
-        posArray[i] = Array(dim).fill(0).map((_, d) =>
-          minPos[d] + (rng.rand() as number) * (maxPos[d] - minPos[d])
-        );
-        pos[node] = posArray[i];
-      }
-    }
-  }
-
-  // Initialize mass and size arrays
-  const mass = new Array(nodes.length).fill(0);
-  const size = new Array(nodes.length).fill(0);
-
-  // Flag to track whether to adjust for node sizes
-  const adjustSizes = nodeSize !== null;
-
-  // Set node masses and sizes
-  for (let i = 0; i < nodes.length; i++) {
-    const node = nodes[i];
-    mass[i] = nodeMass && nodeMass[node] ?
-      nodeMass[node] :
-      (Array.isArray(graph) ? 1 : getNodeDegree(graph, node) + 1);
-
-    size[i] = nodeSize && nodeSize[node] ? nodeSize[node] : 1;
-  }
-
-  // Create adjacency matrix
-  const n = nodes.length;
-  const A = Array(n).fill(0).map(() => Array(n).fill(0));
-
-  // Populate adjacency matrix with edge weights
-  const edges = Array.isArray(graph) ? [] as Edge[] : graph.edges();
-  const nodeIndices: Record<Node, number> = {};
-  nodes.forEach((node, i) => { nodeIndices[node] = i; });
-
-  for (const [source, target] of edges) {
-    const i = nodeIndices[source];
-    const j = nodeIndices[target];
-
-    // Use edge weight if provided, otherwise default to 1
-    let edgeWeight = 1;
-    if (weight && !Array.isArray(graph) && graph.getEdgeData) {
-      edgeWeight = graph.getEdgeData(source, target, weight) || 1;
-    }
 
-    A[i][j] = edgeWeight;
-    A[j][i] = edgeWeight; // For undirected graphs
-  }
-
-  // Initialize force arrays
-  const gravities = Array(n).fill(0).map(() => Array(dim).fill(0));
-  const attraction = Array(n).fill(0).map(() => Array(dim).fill(0));
-  const repulsion = Array(n).fill(0).map(() => Array(dim).fill(0));
-
-  // Simulation parameters
-  let speed = 1;
-  let speedEfficiency = 1;
-  let swing = 1;
-  let traction = 1;
-
-  // Helper function to estimate factor for force scaling
-  function estimateFactor(
-    n: number,
-    swing: number,
-    traction: number,
-    speed: number,
-    speedEfficiency: number,
-    jitterTolerance: number
-  ): [number, number] {
-    // Optimal jitter parameters
-    const optJitter = 0.05 * Math.sqrt(n);
-    const minJitter = Math.sqrt(optJitter);
-    const maxJitter = 10;
-    const minSpeedEfficiency = 0.05;
-
-    // Estimate jitter based on current state
-    const other = Math.min(maxJitter, optJitter * traction / (n * n));
-    let jitter = jitterTolerance * Math.max(minJitter, other);
-
-    // Adjust speed efficiency based on swing/traction ratio
-    if (swing / traction > 2.0) {
-      if (speedEfficiency > minSpeedEfficiency) {
-        speedEfficiency *= 0.5;
-      }
-      jitter = Math.max(jitter, jitterTolerance);
+        posArray = new Array(nodes.length);
+        for (let i = 0; i < nodes.length; i++) {
+            const node = nodes[i];
+            if (pos[node]) {
+                const nodePos = pos[node];
+                posArray[i] = new Array(dim);
+                for (let d = 0; d < dim; d++) {
+                    posArray[i][d] = d < nodePos.length ? nodePos[d] : (rng.rand() as number) * 2 - 1;
+                }
+            } else {
+                posArray[i] = Array(dim)
+                    .fill(0)
+                    .map((_, d) => minPos[d] + (rng.rand() as number) * (maxPos[d] - minPos[d]));
+                pos[node] = posArray[i];
+            }
+        }
     }
 
-    // Calculate target speed
-    let targetSpeed = swing === 0 ?
-      Number.POSITIVE_INFINITY :
-      jitter * speedEfficiency * traction / swing;
-
-    // Further adjust speed efficiency
-    if (swing > jitter * traction) {
-      if (speedEfficiency > minSpeedEfficiency) {
-        speedEfficiency *= 0.7;
-      }
-    } else if (speed < 1000) {
-      speedEfficiency *= 1.3;
-    }
+    // Initialize mass and size arrays
+    const mass = new Array(nodes.length).fill(0);
+    const size = new Array(nodes.length).fill(0);
 
-    // Limit the speed increase
-    const maxRise = 0.5;
-    speed = speed + Math.min(targetSpeed - speed, maxRise * speed);
+    // Flag to track whether to adjust for node sizes
+    const adjustSizes = nodeSize !== null;
 
-    return [speed, speedEfficiency];
-  }
+    // Set node masses and sizes
+    for (let i = 0; i < nodes.length; i++) {
+        const node = nodes[i];
+        mass[i] =
+            nodeMass && nodeMass[node] ? nodeMass[node] : Array.isArray(graph) ? 1 : getNodeDegree(graph, node) + 1;
 
-  // Main simulation loop
-  for (let iter = 0; iter < maxIter; iter++) {
-    // Reset forces for this iteration
-    for (let i = 0; i < n; i++) {
-      for (let d = 0; d < dim; d++) {
-        attraction[i][d] = 0;
-        repulsion[i][d] = 0;
-        gravities[i][d] = 0;
-      }
+        size[i] = nodeSize && nodeSize[node] ? nodeSize[node] : 1;
     }
 
-    // Compute pairwise differences and distances
-    const diff = Array(n).fill(0).map(() =>
-      Array(n).fill(0).map(() => Array(dim).fill(0))
-    );
-
-    const distance = Array(n).fill(0).map(() => Array(n).fill(0));
-
-    for (let i = 0; i < n; i++) {
-      for (let j = 0; j < n; j++) {
-        if (i === j) continue;
-
-        for (let d = 0; d < dim; d++) {
-          diff[i][j][d] = posArray[i][d] - posArray[j][d];
+    // Create adjacency matrix
+    const n = nodes.length;
+    const A = Array(n)
+        .fill(0)
+        .map(() => Array(n).fill(0));
+
+    // Populate adjacency matrix with edge weights
+    const edges = Array.isArray(graph) ? ([] as Edge[]) : graph.edges();
+    const nodeIndices: Record<Node, number> = {};
+    nodes.forEach((node, i) => {
+        nodeIndices[node] = i;
+    });
+
+    for (const [source, target] of edges) {
+        const i = nodeIndices[source];
+        const j = nodeIndices[target];
+
+        // Use edge weight if provided, otherwise default to 1
+        let edgeWeight = 1;
+        if (weight && !Array.isArray(graph) && graph.getEdgeData) {
+            edgeWeight = graph.getEdgeData(source, target, weight) || 1;
         }
 
-        distance[i][j] = Math.sqrt(diff[i][j].reduce((sum, d) => sum + d * d, 0));
-        // Prevent division by zero
-        if (distance[i][j] < 0.01) distance[i][j] = 0.01;
-      }
+        A[i][j] = edgeWeight;
+        A[j][i] = edgeWeight; // For undirected graphs
     }
 
-    // Calculate attraction forces
-    if (linlog) {
-      // Logarithmic attraction model
-      for (let i = 0; i < n; i++) {
-        for (let j = 0; j < n; j++) {
-          if (i === j || A[i][j] === 0) continue;
+    // Initialize force arrays
+    const gravities = Array(n)
+        .fill(0)
+        .map(() => Array(dim).fill(0));
+    const attraction = Array(n)
+        .fill(0)
+        .map(() => Array(dim).fill(0));
+    const repulsion = Array(n)
+        .fill(0)
+        .map(() => Array(dim).fill(0));
+
+    // Simulation parameters
+    let speed = 1;
+    let speedEfficiency = 1;
+    const swing = 1;
+    const traction = 1;
+
+    // Helper function to estimate factor for force scaling
+    function estimateFactor(
+        n: number,
+        swing: number,
+        traction: number,
+        speed: number,
+        speedEfficiency: number,
+        jitterTolerance: number,
+    ): [number, number] {
+        // Optimal jitter parameters
+        const optJitter = 0.05 * Math.sqrt(n);
+        const minJitter = Math.sqrt(optJitter);
+        const maxJitter = 10;
+        const minSpeedEfficiency = 0.05;
+
+        // Estimate jitter based on current state
+        const other = Math.min(maxJitter, (optJitter * traction) / (n * n));
+        let jitter = jitterTolerance * Math.max(minJitter, other);
+
+        // Adjust speed efficiency based on swing/traction ratio
+        if (swing / traction > 2.0) {
+            if (speedEfficiency > minSpeedEfficiency) {
+                speedEfficiency *= 0.5;
+            }
+            jitter = Math.max(jitter, jitterTolerance);
+        }
 
-          const dist = distance[i][j];
-          const factor = -Math.log(1 + dist) / dist * A[i][j];
+        // Calculate target speed
+        const targetSpeed = swing === 0 ? Number.POSITIVE_INFINITY : (jitter * speedEfficiency * traction) / swing;
 
-          for (let d = 0; d < dim; d++) {
-            const force = factor * diff[i][j][d];
-            attraction[i][d] += force;
-          }
-        }
-      }
-    } else {
-      // Linear attraction model
-      for (let i = 0; i < n; i++) {
-        for (let j = 0; j < n; j++) {
-          if (i === j || A[i][j] === 0) continue;
-
-          for (let d = 0; d < dim; d++) {
-            const force = -diff[i][j][d] * A[i][j];
-            attraction[i][d] += force;
-          }
+        // Further adjust speed efficiency
+        if (swing > jitter * traction) {
+            if (speedEfficiency > minSpeedEfficiency) {
+                speedEfficiency *= 0.7;
+            }
+        } else if (speed < 1000) {
+            speedEfficiency *= 1.3;
         }
-      }
+
+        // Limit the speed increase
+        const maxRise = 0.5;
+        speed = speed + Math.min(targetSpeed - speed, maxRise * speed);
+
+        return [speed, speedEfficiency];
     }
 
-    // Apply distributed attraction if enabled
-    if (distributedAction) {
-      for (let i = 0; i < n; i++) {
-        for (let d = 0; d < dim; d++) {
-          attraction[i][d] /= mass[i];
+    // Main simulation loop
+    for (let iter = 0; iter < maxIter; iter++) {
+        // Reset forces for this iteration
+        for (let i = 0; i < n; i++) {
+            for (let d = 0; d < dim; d++) {
+                attraction[i][d] = 0;
+                repulsion[i][d] = 0;
+                gravities[i][d] = 0;
+            }
         }
-      }
-    }
 
-    // Calculate repulsion forces
-    for (let i = 0; i < n; i++) {
-      for (let j = 0; j < n; j++) {
-        if (i === j) continue;
+        // Compute pairwise differences and distances
+        const diff = Array(n)
+            .fill(0)
+            .map(() =>
+                Array(n)
+                    .fill(0)
+                    .map(() => Array(dim).fill(0)),
+            );
+
+        const distance = Array(n)
+            .fill(0)
+            .map(() => Array(n).fill(0));
+
+        for (let i = 0; i < n; i++) {
+            for (let j = 0; j < n; j++) {
+                if (i === j) {continue;}
+
+                for (let d = 0; d < dim; d++) {
+                    diff[i][j][d] = posArray[i][d] - posArray[j][d];
+                }
+
+                distance[i][j] = Math.sqrt(diff[i][j].reduce((sum, d) => sum + d * d, 0));
+                // Prevent division by zero
+                if (distance[i][j] < 0.01) {distance[i][j] = 0.01;}
+            }
+        }
 
-        let dist = distance[i][j];
+        // Calculate attraction forces
+        if (linlog) {
+            // Logarithmic attraction model
+            for (let i = 0; i < n; i++) {
+                for (let j = 0; j < n; j++) {
+                    if (i === j || A[i][j] === 0) {continue;}
+
+                    const dist = distance[i][j];
+                    const factor = (-Math.log(1 + dist) / dist) * A[i][j];
+
+                    for (let d = 0; d < dim; d++) {
+                        const force = factor * diff[i][j][d];
+                        attraction[i][d] += force;
+                    }
+                }
+            }
+        } else {
+            // Linear attraction model
+            for (let i = 0; i < n; i++) {
+                for (let j = 0; j < n; j++) {
+                    if (i === j || A[i][j] === 0) {continue;}
+
+                    for (let d = 0; d < dim; d++) {
+                        const force = -diff[i][j][d] * A[i][j];
+                        attraction[i][d] += force;
+                    }
+                }
+            }
+        }
 
-        // Adjust distance for node sizes if needed
-        if (adjustSizes) {
-          dist -= size[i] - size[j];
-          dist = Math.max(dist, 0.01); // Prevent negative or zero distances
+        // Apply distributed attraction if enabled
+        if (distributedAction) {
+            for (let i = 0; i < n; i++) {
+                for (let d = 0; d < dim; d++) {
+                    attraction[i][d] /= mass[i];
+                }
+            }
         }
 
-        const distSquared = dist * dist;
-        const massProduct = mass[i] * mass[j];
-        const factor = (massProduct / distSquared) * scalingRatio;
+        // Calculate repulsion forces
+        for (let i = 0; i < n; i++) {
+            for (let j = 0; j < n; j++) {
+                if (i === j) {continue;}
 
-        for (let d = 0; d < dim; d++) {
-          const direction = diff[i][j][d] / dist;
-          repulsion[i][d] += direction * factor;
-        }
-      }
-    }
+                let dist = distance[i][j];
 
-    // Calculate gravity forces
-    // First find the center of mass
-    const centerOfMass = Array(dim).fill(0);
-    for (let i = 0; i < n; i++) {
-      for (let d = 0; d < dim; d++) {
-        centerOfMass[d] += posArray[i][d] / n;
-      }
-    }
+                // Adjust distance for node sizes if needed
+                if (adjustSizes) {
+                    dist -= size[i] - size[j];
+                    dist = Math.max(dist, 0.01); // Prevent negative or zero distances
+                }
 
-    for (let i = 0; i < n; i++) {
-      const posCentered = Array(dim);
-      for (let d = 0; d < dim; d++) {
-        posCentered[d] = posArray[i][d] - centerOfMass[d];
-      }
+                const distSquared = dist * dist;
+                const massProduct = mass[i] * mass[j];
+                const factor = (massProduct / distSquared) * scalingRatio;
 
-      if (strongGravity) {
-        // Strong gravity model
-        for (let d = 0; d < dim; d++) {
-          gravities[i][d] = -gravity * mass[i] * posCentered[d];
+                for (let d = 0; d < dim; d++) {
+                    const direction = diff[i][j][d] / dist;
+                    repulsion[i][d] += direction * factor;
+                }
+            }
         }
-      } else {
-        // Regular gravity model
-        const dist = Math.sqrt(posCentered.reduce((sum, val) => sum + val * val, 0));
-
-        if (dist > 0.01) {
-          for (let d = 0; d < dim; d++) {
-            const direction = posCentered[d] / dist;
-            gravities[i][d] = -gravity * mass[i] * direction;
-          }
+
+        // Calculate gravity forces
+        // First find the center of mass
+        const centerOfMass = Array(dim).fill(0);
+        for (let i = 0; i < n; i++) {
+            for (let d = 0; d < dim; d++) {
+                centerOfMass[d] += posArray[i][d] / n;
+            }
         }
-      }
-    }
 
-    // Calculate total forces and update positions
-    const update = Array(n).fill(0).map(() => Array(dim).fill(0));
-    let totalSwing = 0;
-    let totalTraction = 0;
+        for (let i = 0; i < n; i++) {
+            const posCentered = Array(dim);
+            for (let d = 0; d < dim; d++) {
+                posCentered[d] = posArray[i][d] - centerOfMass[d];
+            }
+
+            if (strongGravity) {
+                // Strong gravity model
+                for (let d = 0; d < dim; d++) {
+                    gravities[i][d] = -gravity * mass[i] * posCentered[d];
+                }
+            } else {
+                // Regular gravity model
+                const dist = Math.sqrt(posCentered.reduce((sum, val) => sum + val * val, 0));
+
+                if (dist > 0.01) {
+                    for (let d = 0; d < dim; d++) {
+                        const direction = posCentered[d] / dist;
+                        gravities[i][d] = -gravity * mass[i] * direction;
+                    }
+                }
+            }
+        }
 
-    for (let i = 0; i < n; i++) {
-      for (let d = 0; d < dim; d++) {
-        update[i][d] = attraction[i][d] + repulsion[i][d] + gravities[i][d];
-      }
+        // Calculate total forces and update positions
+        const update = Array(n)
+            .fill(0)
+            .map(() => Array(dim).fill(0));
+        let totalSwing = 0;
+        let totalTraction = 0;
 
-      // Calculate swing and traction for this node
-      const oldPos = [...posArray[i]];
-      const newPos = oldPos.map((p, d) => p + update[i][d]);
+        for (let i = 0; i < n; i++) {
+            for (let d = 0; d < dim; d++) {
+                update[i][d] = attraction[i][d] + repulsion[i][d] + gravities[i][d];
+            }
 
-      const swingVector = oldPos.map((p, d) => p - newPos[d]);
-      const tractionVector = oldPos.map((p, d) => p + newPos[d]);
+            // Calculate swing and traction for this node
+            const oldPos = [...posArray[i]];
+            const newPos = oldPos.map((p, d) => p + update[i][d]);
 
-      const swingMagnitude = Math.sqrt(swingVector.reduce((sum, val) => sum + val * val, 0));
-      const tractionMagnitude = Math.sqrt(tractionVector.reduce((sum, val) => sum + val * val, 0));
+            const swingVector = oldPos.map((p, d) => p - newPos[d]);
+            const tractionVector = oldPos.map((p, d) => p + newPos[d]);
 
-      totalSwing += mass[i] * swingMagnitude;
-      totalTraction += 0.5 * mass[i] * tractionMagnitude;
-    }
+            const swingMagnitude = Math.sqrt(swingVector.reduce((sum, val) => sum + val * val, 0));
+            const tractionMagnitude = Math.sqrt(tractionVector.reduce((sum, val) => sum + val * val, 0));
+
+            totalSwing += mass[i] * swingMagnitude;
+            totalTraction += 0.5 * mass[i] * tractionMagnitude;
+        }
 
-    // Update speed and efficiency
-    [speed, speedEfficiency] = estimateFactor(
-      n,
-      totalSwing,
-      totalTraction,
-      speed,
-      speedEfficiency,
-      jitterTolerance
-    );
+        // Update speed and efficiency
+        [speed, speedEfficiency] = estimateFactor(
+            n,
+            totalSwing,
+            totalTraction,
+            speed,
+            speedEfficiency,
+            jitterTolerance,
+        );
 
-    // Apply forces to update positions
-    let totalMovement = 0;
+        // Apply forces to update positions
+        let totalMovement = 0;
+
+        for (let i = 0; i < n; i++) {
+            let factor;
+
+            if (adjustSizes) {
+                // Calculate displacement magnitude
+                const df = Math.sqrt(update[i].reduce((sum, val) => sum + val * val, 0));
+                const swinging = mass[i] * df;
+
+                // Determine scaling factor with size adjustments
+                factor = (0.1 * speed) / (1 + Math.sqrt(speed * swinging));
+                factor = Math.min(factor * df, 10) / df;
+            } else {
+                // Standard scaling factor
+                const swinging = mass[i] * Math.sqrt(update[i].reduce((sum, val) => sum + val * val, 0));
+                factor = speed / (1 + Math.sqrt(speed * swinging));
+            }
+
+            // Apply factor to update position
+            for (let d = 0; d < dim; d++) {
+                const movement = update[i][d] * factor;
+                posArray[i][d] += movement;
+                totalMovement += Math.abs(movement);
+            }
+        }
 
-    for (let i = 0; i < n; i++) {
-      let factor;
-
-      if (adjustSizes) {
-        // Calculate displacement magnitude
-        const df = Math.sqrt(update[i].reduce((sum, val) => sum + val * val, 0));
-        const swinging = mass[i] * df;
-
-        // Determine scaling factor with size adjustments
-        factor = 0.1 * speed / (1 + Math.sqrt(speed * swinging));
-        factor = Math.min(factor * df, 10) / df;
-      } else {
-        // Standard scaling factor
-        const swinging = mass[i] * Math.sqrt(update[i].reduce((sum, val) => sum + val * val, 0));
-        factor = speed / (1 + Math.sqrt(speed * swinging));
-      }
-
-      // Apply factor to update position
-      for (let d = 0; d < dim; d++) {
-        const movement = update[i][d] * factor;
-        posArray[i][d] += movement;
-        totalMovement += Math.abs(movement);
-      }
+        // Check for convergence
+        if (totalMovement < 1e-10) {
+            break;
+        }
     }
 
-    // Check for convergence
-    if (totalMovement < 1e-10) {
-      break;
+    // Create position dictionary
+    const positions: PositionMap = {};
+    for (let i = 0; i < n; i++) {
+        positions[nodes[i]] = posArray[i];
     }
-  }
-
-  // Create position dictionary
-  const positions: PositionMap = {};
-  for (let i = 0; i < n; i++) {
-    positions[nodes[i]] = posArray[i];
-  }
 
-  return rescaleLayout(positions) as PositionMap;
+    return rescaleLayout(positions) as PositionMap;
 }
 
 // Helper function to get node degree
 function getNodeDegree(graph: Graph, node: Node): number {
-  return graph.edges().filter((edge: Edge) =>
-    edge[0] === node || edge[1] === node
-  ).length;
-}
+    return graph.edges().filter((edge: Edge) => edge[0] === node || edge[1] === node).length;
+}