@graphty/layout 1.2.4 → 1.2.5

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Files changed (8) hide show
  1. package/dist/src/layouts/force-directed/forceatlas2.js +22 -4
  2. package/dist/src/layouts/force-directed/forceatlas2.js.map +1 -1
  3. package/dist/src/utils/rescale.d.ts +1 -1
  4. package/dist/src/utils/rescale.js +89 -14
  5. package/dist/src/utils/rescale.js.map +1 -1
  6. package/package.json +6 -4
  7. package/src/layouts/force-directed/forceatlas2.ts +23 -4
  8. package/src/utils/rescale.ts +90 -15
package/dist/src/layouts/force-directed/forceatlas2.js CHANGED
@@ -45,7 +45,11 @@ export function forceatlas2Layout(G, pos = null, maxIter = 100, jitterTolerance
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  // Use provided positions
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  posArray = new Array(nodes.length);
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  for (let i = 0; i < nodes.length; i++) {
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- posArray[i] = [...pos[nodes[i]]];
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+ const nodePos = pos[nodes[i]];
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+ posArray[i] = new Array(dim);
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+ for (let d = 0; d < dim; d++) {
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+ posArray[i][d] = d < nodePos.length ? nodePos[d] : (rng.rand() * 2 - 1);
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+ }
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  }
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  }
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  else {
@@ -54,16 +58,30 @@ export function forceatlas2Layout(G, pos = null, maxIter = 100, jitterTolerance
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  let maxPos = Array(dim).fill(Number.NEGATIVE_INFINITY);
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  // Find min and max of existing positions
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  for (const node in pos) {
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+ const nodePos = pos[node];
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  for (let d = 0; d < dim; d++) {
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- minPos[d] = Math.min(minPos[d], pos[node][d]);
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- maxPos[d] = Math.max(maxPos[d], pos[node][d]);
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+ if (d < nodePos.length) {
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+ minPos[d] = Math.min(minPos[d], nodePos[d]);
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+ maxPos[d] = Math.max(maxPos[d], nodePos[d]);
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+ }
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+ }
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+ }
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+ // If min/max are still infinity for some dimensions, use default range
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+ for (let d = 0; d < dim; d++) {
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+ if (!isFinite(minPos[d]) || !isFinite(maxPos[d])) {
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+ minPos[d] = -1;
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+ maxPos[d] = 1;
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  }
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  }
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  posArray = new Array(nodes.length);
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  for (let i = 0; i < nodes.length; i++) {
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  const node = nodes[i];
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  if (pos[node]) {
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- posArray[i] = [...pos[node]];
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+ const nodePos = pos[node];
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+ posArray[i] = new Array(dim);
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+ for (let d = 0; d < dim; d++) {
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+ posArray[i][d] = d < nodePos.length ? nodePos[d] : (rng.rand() * 2 - 1);
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+ }
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  }
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  else {
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  posArray[i] = Array(dim).fill(0).map((_, d) => minPos[d] + rng.rand() * (maxPos[d] - minPos[d]));
package/dist/src/layouts/force-directed/forceatlas2.js.map CHANGED
@@ -1 +1 @@
1
- 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package/dist/src/utils/rescale.d.ts CHANGED
@@ -10,7 +10,7 @@ import { PositionMap } from '../types';
10
10
  * @param center - Coordinate pair around which to center the layout
11
11
  * @returns Rescaled positions dictionary
12
12
  */
13
- export declare function rescaleLayout(pos: PositionMap | number[][], scale?: number, center?: number[]): PositionMap | number[][];
13
+ export declare function rescaleLayout(pos: PositionMap | number[][], scale?: number, center?: number[] | null): PositionMap | number[][];
14
14
  /**
15
15
  * Return a dictionary of scaled positions centered at (0, 0).
16
16
  *
package/dist/src/utils/rescale.js CHANGED
@@ -9,7 +9,7 @@
9
9
  * @param center - Coordinate pair around which to center the layout
10
10
  * @returns Rescaled positions dictionary
11
11
  */
12
- export function rescaleLayout(pos, scale = 1, center = [0, 0]) {
12
+ export function rescaleLayout(pos, scale = 1, center = null) {
13
13
  // Check if pos is empty
14
14
  if (Array.isArray(pos)) {
15
15
  if (pos.length === 0)
@@ -22,51 +22,126 @@ export function rescaleLayout(pos, scale = 1, center = [0, 0]) {
22
22
  // Extract position values
23
23
  const posValues = Array.isArray(pos) ? pos : Object.values(pos);
24
24
  const dim = posValues[0].length;
25
- // Calculate center of positions
25
+ // Fix Bug #1: Default center should match dimensionality
26
+ if (!center) {
27
+ center = Array(dim).fill(0);
28
+ }
29
+ // Use the maximum dimension between positions and center
30
+ const targetDim = Math.max(dim, center.length);
31
+ // Calculate center of positions, handling NaN values (Bug #3)
26
32
  const posCenter = Array(dim).fill(0);
33
+ const counts = Array(dim).fill(0);
27
34
  for (const p of posValues) {
28
35
  for (let i = 0; i < dim; i++) {
29
- posCenter[i] += p[i] / posValues.length;
36
+ if (!isNaN(p[i])) {
37
+ posCenter[i] += p[i];
38
+ counts[i]++;
39
+ }
30
40
  }
31
41
  }
42
+ // Average by actual count, not total length
43
+ for (let i = 0; i < dim; i++) {
44
+ posCenter[i] = counts[i] > 0 ? posCenter[i] / counts[i] : 0;
45
+ }
32
46
  // Center positions
33
47
  let centeredPos = {};
34
48
  if (Array.isArray(pos)) {
35
- centeredPos = pos.map(p => p.map((val, i) => val - posCenter[i]));
49
+ centeredPos = pos.map(p => {
50
+ const centered = Array(targetDim).fill(0);
51
+ for (let i = 0; i < targetDim; i++) {
52
+ centered[i] = (i < p.length ? p[i] : 0) - (i < posCenter.length ? posCenter[i] : 0);
53
+ }
54
+ return centered;
55
+ });
36
56
  }
37
57
  else {
38
58
  for (const [node, p] of Object.entries(pos)) {
39
- centeredPos[node] = p.map((val, i) => val - posCenter[i]);
59
+ const centered = Array(targetDim).fill(0);
60
+ for (let i = 0; i < targetDim; i++) {
61
+ centered[i] = (i < p.length ? p[i] : 0) - (i < posCenter.length ? posCenter[i] : 0);
62
+ }
63
+ centeredPos[node] = centered;
40
64
  }
41
65
  }
42
- // Find maximum distance from center
66
+ // Find maximum distance from center, handling NaN values (Bug #3)
43
67
  let maxDistance = 0;
44
68
  const centeredValues = Array.isArray(centeredPos) ? centeredPos : Object.values(centeredPos);
45
69
  for (const p of centeredValues) {
46
- const distance = Math.sqrt(p.reduce((sum, val) => sum + val * val, 0));
47
- maxDistance = Math.max(maxDistance, distance);
70
+ // Calculate distance, treating NaN as 0 for distance calculation
71
+ let sumSquares = 0;
72
+ for (const val of p) {
73
+ if (!isNaN(val)) {
74
+ sumSquares += val * val;
75
+ }
76
+ }
77
+ const distance = Math.sqrt(sumSquares);
78
+ if (!isNaN(distance)) {
79
+ maxDistance = Math.max(maxDistance, distance);
80
+ }
48
81
  }
49
82
  // Rescale
50
83
  let scaledPos = Array.isArray(pos) ? [] : {};
51
84
  if (maxDistance > 0) {
52
85
  const scaleFactor = scale / maxDistance;
53
86
  if (Array.isArray(pos)) {
54
- scaledPos = centeredPos.map(p => p.map((val, i) => val * scaleFactor + center[i]));
87
+ scaledPos = centeredPos.map((p, idx) => p.map((val, i) => {
88
+ // Check if this dimension existed in the original position
89
+ const origPos = pos[idx];
90
+ if (i >= origPos.length) {
91
+ // This dimension was added, use center value
92
+ return center[i];
93
+ }
94
+ // Preserve NaN values (Bug #3)
95
+ if (isNaN(val))
96
+ return NaN;
97
+ return val * scaleFactor + center[i];
98
+ }));
55
99
  }
56
100
  else {
57
101
  for (const [node, p] of Object.entries(centeredPos)) {
58
- scaledPos[node] = p.map((val, i) => val * scaleFactor + center[i]);
102
+ const origPos = pos[node];
103
+ scaledPos[node] = p.map((val, i) => {
104
+ // Check if this dimension existed in the original position
105
+ if (i >= origPos.length) {
106
+ // This dimension was added, use center value
107
+ return center[i];
108
+ }
109
+ // Preserve NaN values (Bug #3)
110
+ if (isNaN(val))
111
+ return NaN;
112
+ return val * scaleFactor + center[i];
113
+ });
59
114
  }
60
115
  }
61
116
  }
62
117
  else {
63
- // All nodes at the same position
118
+ // All nodes at the same position - extend to target dimensionality
64
119
  if (Array.isArray(pos)) {
65
- scaledPos = Array(pos.length).fill(0).map(() => [...center]);
120
+ scaledPos = pos.map(p => {
121
+ const result = Array(targetDim);
122
+ for (let i = 0; i < targetDim; i++) {
123
+ if (i < p.length) {
124
+ result[i] = isNaN(p[i]) ? NaN : center[i];
125
+ }
126
+ else {
127
+ result[i] = center[i];
128
+ }
129
+ }
130
+ return result;
131
+ });
66
132
  }
67
133
  else {
68
- for (const node of Object.keys(pos)) {
69
- scaledPos[node] = [...center];
134
+ for (const [node, p] of Object.entries(pos)) {
135
+ const result = Array(targetDim);
136
+ for (let i = 0; i < targetDim; i++) {
137
+ if (i < p.length) {
138
+ result[i] = isNaN(p[i]) ? NaN : center[i];
139
+ }
140
+ else {
141
+ result[i] = center[i];
142
+ }
143
+ }
144
+ scaledPos[node] = result;
70
145
  }
71
146
  }
72
147
  }
package/dist/src/utils/rescale.js.map CHANGED
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package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@graphty/layout",
3
- "version": "1.2.4",
3
+ "version": "1.2.5",
4
4
  "description": "graph layout algorithms based on networkx",
5
5
  "author": "Adam Powers <apowers@ato.ms>",
6
6
  "main": "dist/src/index.js",
@@ -28,12 +28,13 @@
28
28
  "test:coverage": "vitest run --coverage",
29
29
  "prepare": "husky",
30
30
  "build": "tsc",
31
- "build:examples": "npm run build && node build-examples-script.js",
31
+ "build:bundle": "node scripts/build-bundle.js",
32
+ "build:all": "npm run build && npm run build:bundle",
32
33
  "watch": "tsc --watch",
33
34
  "dev": "tsc --watch",
34
35
  "commit": "cz",
35
- "serve": "npm run build:examples && vite",
36
- "examples": "npm run build:examples && vite"
36
+ "serve": "npm run build:bundle && vite",
37
+ "examples": "npm run build:bundle && vite"
37
38
  },
38
39
  "repository": {
39
40
  "type": "git",
@@ -67,6 +68,7 @@
67
68
  "husky": "^9.1.7",
68
69
  "semantic-release": "^24.2.7",
69
70
  "typescript": "^5.3.3",
71
+ "vite": "^7.0.5",
70
72
  "vitest": "^3.2.4"
71
73
  }
72
74
  }
package/src/layouts/force-directed/forceatlas2.ts CHANGED
@@ -66,7 +66,11 @@ export function forceatlas2Layout(
66
66
  // Use provided positions
67
67
  posArray = new Array(nodes.length);
68
68
  for (let i = 0; i < nodes.length; i++) {
69
- posArray[i] = [...pos[nodes[i]]];
69
+ const nodePos = pos[nodes[i]];
70
+ posArray[i] = new Array(dim);
71
+ for (let d = 0; d < dim; d++) {
72
+ posArray[i][d] = d < nodePos.length ? nodePos[d] : (rng.rand() as number * 2 - 1);
73
+ }
70
74
  }
71
75
  } else {
72
76
  // Some nodes don't have positions, initialize within the range of existing positions
@@ -75,9 +79,20 @@ export function forceatlas2Layout(
75
79
 
76
80
  // Find min and max of existing positions
77
81
  for (const node in pos) {
82
+ const nodePos = pos[node];
78
83
  for (let d = 0; d < dim; d++) {
79
- minPos[d] = Math.min(minPos[d], pos[node][d]);
80
- maxPos[d] = Math.max(maxPos[d], pos[node][d]);
84
+ if (d < nodePos.length) {
85
+ minPos[d] = Math.min(minPos[d], nodePos[d]);
86
+ maxPos[d] = Math.max(maxPos[d], nodePos[d]);
87
+ }
88
+ }
89
+ }
90
+
91
+ // If min/max are still infinity for some dimensions, use default range
92
+ for (let d = 0; d < dim; d++) {
93
+ if (!isFinite(minPos[d]) || !isFinite(maxPos[d])) {
94
+ minPos[d] = -1;
95
+ maxPos[d] = 1;
81
96
  }
82
97
  }
83
98
 
@@ -85,7 +100,11 @@ export function forceatlas2Layout(
85
100
  for (let i = 0; i < nodes.length; i++) {
86
101
  const node = nodes[i];
87
102
  if (pos[node]) {
88
- posArray[i] = [...pos[node]];
103
+ const nodePos = pos[node];
104
+ posArray[i] = new Array(dim);
105
+ for (let d = 0; d < dim; d++) {
106
+ posArray[i][d] = d < nodePos.length ? nodePos[d] : (rng.rand() as number * 2 - 1);
107
+ }
89
108
  } else {
90
109
  posArray[i] = Array(dim).fill(0).map((_, d) =>
91
110
  minPos[d] + (rng.rand() as number) * (maxPos[d] - minPos[d])
package/src/utils/rescale.ts CHANGED
@@ -15,7 +15,7 @@ import { PositionMap } from '../types';
15
15
  export function rescaleLayout(
16
16
  pos: PositionMap | number[][],
17
17
  scale: number = 1,
18
- center: number[] = [0, 0]
18
+ center: number[] | null = null
19
19
  ): PositionMap | number[][] {
20
20
  // Check if pos is empty
21
21
  if (Array.isArray(pos)) {
@@ -28,30 +28,67 @@ export function rescaleLayout(
28
28
  const posValues: number[][] = Array.isArray(pos) ? pos : Object.values(pos);
29
29
  const dim = posValues[0].length;
30
30
 
31
- // Calculate center of positions
31
+ // Fix Bug #1: Default center should match dimensionality
32
+ if (!center) {
33
+ center = Array(dim).fill(0);
34
+ }
35
+
36
+ // Use the maximum dimension between positions and center
37
+ const targetDim = Math.max(dim, center.length);
38
+
39
+ // Calculate center of positions, handling NaN values (Bug #3)
32
40
  const posCenter = Array(dim).fill(0);
41
+ const counts = Array(dim).fill(0);
42
+
33
43
  for (const p of posValues) {
34
44
  for (let i = 0; i < dim; i++) {
35
- posCenter[i] += p[i] / posValues.length;
45
+ if (!isNaN(p[i])) {
46
+ posCenter[i] += p[i];
47
+ counts[i]++;
48
+ }
36
49
  }
37
50
  }
51
+
52
+ // Average by actual count, not total length
53
+ for (let i = 0; i < dim; i++) {
54
+ posCenter[i] = counts[i] > 0 ? posCenter[i] / counts[i] : 0;
55
+ }
38
56
 
39
57
  // Center positions
40
58
  let centeredPos: PositionMap | number[][] = {};
41
59
  if (Array.isArray(pos)) {
42
- centeredPos = pos.map(p => p.map((val, i) => val - posCenter[i]));
60
+ centeredPos = pos.map(p => {
61
+ const centered = Array(targetDim).fill(0);
62
+ for (let i = 0; i < targetDim; i++) {
63
+ centered[i] = (i < p.length ? p[i] : 0) - (i < posCenter.length ? posCenter[i] : 0);
64
+ }
65
+ return centered;
66
+ });
43
67
  } else {
44
68
  for (const [node, p] of Object.entries(pos)) {
45
- (centeredPos as PositionMap)[node] = p.map((val, i) => val - posCenter[i]);
69
+ const centered = Array(targetDim).fill(0);
70
+ for (let i = 0; i < targetDim; i++) {
71
+ centered[i] = (i < p.length ? p[i] : 0) - (i < posCenter.length ? posCenter[i] : 0);
72
+ }
73
+ (centeredPos as PositionMap)[node] = centered;
46
74
  }
47
75
  }
48
76
 
49
- // Find maximum distance from center
77
+ // Find maximum distance from center, handling NaN values (Bug #3)
50
78
  let maxDistance = 0;
51
79
  const centeredValues = Array.isArray(centeredPos) ? centeredPos : Object.values(centeredPos);
52
80
  for (const p of centeredValues) {
53
- const distance = Math.sqrt(p.reduce((sum, val) => sum + val * val, 0));
54
- maxDistance = Math.max(maxDistance, distance);
81
+ // Calculate distance, treating NaN as 0 for distance calculation
82
+ let sumSquares = 0;
83
+ for (const val of p) {
84
+ if (!isNaN(val)) {
85
+ sumSquares += val * val;
86
+ }
87
+ }
88
+ const distance = Math.sqrt(sumSquares);
89
+ if (!isNaN(distance)) {
90
+ maxDistance = Math.max(maxDistance, distance);
91
+ }
55
92
  }
56
93
 
57
94
  // Rescale
@@ -61,21 +98,59 @@ export function rescaleLayout(
61
98
  const scaleFactor = scale / maxDistance;
62
99
 
63
100
  if (Array.isArray(pos)) {
64
- (scaledPos as number[][]) = (centeredPos as number[][]).map(p =>
65
- p.map((val, i) => val * scaleFactor + center[i])
101
+ (scaledPos as number[][]) = (centeredPos as number[][]).map((p, idx) =>
102
+ p.map((val, i) => {
103
+ // Check if this dimension existed in the original position
104
+ const origPos = pos[idx];
105
+ if (i >= origPos.length) {
106
+ // This dimension was added, use center value
107
+ return center![i];
108
+ }
109
+ // Preserve NaN values (Bug #3)
110
+ if (isNaN(val)) return NaN;
111
+ return val * scaleFactor + center![i];
112
+ })
66
113
  );
67
114
  } else {
68
115
  for (const [node, p] of Object.entries(centeredPos as PositionMap)) {
69
- (scaledPos as PositionMap)[node] = p.map((val, i) => val * scaleFactor + center[i]);
116
+ const origPos = pos[node];
117
+ (scaledPos as PositionMap)[node] = p.map((val, i) => {
118
+ // Check if this dimension existed in the original position
119
+ if (i >= origPos.length) {
120
+ // This dimension was added, use center value
121
+ return center![i];
122
+ }
123
+ // Preserve NaN values (Bug #3)
124
+ if (isNaN(val)) return NaN;
125
+ return val * scaleFactor + center![i];
126
+ });
70
127
  }
71
128
  }
72
129
  } else {
73
- // All nodes at the same position
130
+ // All nodes at the same position - extend to target dimensionality
74
131
  if (Array.isArray(pos)) {
75
- (scaledPos as number[][]) = Array(pos.length).fill(0).map(() => [...center]);
132
+ (scaledPos as number[][]) = pos.map(p => {
133
+ const result = Array(targetDim);
134
+ for (let i = 0; i < targetDim; i++) {
135
+ if (i < p.length) {
136
+ result[i] = isNaN(p[i]) ? NaN : center![i];
137
+ } else {
138
+ result[i] = center![i];
139
+ }
140
+ }
141
+ return result;
142
+ });
76
143
  } else {
77
- for (const node of Object.keys(pos)) {
78
- (scaledPos as PositionMap)[node] = [...center];
144
+ for (const [node, p] of Object.entries(pos)) {
145
+ const result = Array(targetDim);
146
+ for (let i = 0; i < targetDim; i++) {
147
+ if (i < p.length) {
148
+ result[i] = isNaN(p[i]) ? NaN : center![i];
149
+ } else {
150
+ result[i] = center![i];
151
+ }
152
+ }
153
+ (scaledPos as PositionMap)[node] = result;
79
154
  }
80
155
  }
81
156
  }