@graphty/graph-io 0.3.46 → 0.3.48

package/dist/src/sources/cypher/descriptor.js

@@ -0,0 +1,119 @@
+/**
+ * The descriptors of the Cypher source and its presets: catalog data, available without loading
+ * the sources' code.
+ */
+/** The parameters every Cypher source shares. */
+const CYPHER_PARAMS = [
+    { name: "query", plainName: "Query", type: "query", language: "cypher" },
+    {
+        name: "mode",
+        plainName: "Mode",
+        type: "enum",
+        values: [
+            { value: "query", label: "Query" },
+            { value: "all", label: "Everything" },
+            { value: "neighborhood", label: "Neighborhood" },
+        ],
+    },
+    { name: "ids", plainName: "Seed ids", type: "node-id" },
+    { name: "depth", plainName: "Depth", type: "integer", default: 1, min: 1, max: 10 },
+    { name: "labels", plainName: "Labels", type: "string", role: "filter", advanced: true },
+    { name: "relationshipTypes", plainName: "Relationship types", type: "string", role: "filter", advanced: true },
+    { name: "idProperty", plainName: "Id property", type: "string", advanced: true },
+    { name: "database", plainName: "Database", type: "string" },
+    {
+        name: "long",
+        plainName: "Large integers",
+        type: "enum",
+        advanced: true,
+        values: [
+            { value: "f64", label: "Number" },
+            { value: "string", label: "Text" },
+        ],
+    },
+    { name: "countFirst", plainName: "Count first", type: "boolean", advanced: true },
+    { name: "pageSize", plainName: "Page size", type: "integer", default: 1000, min: 1, max: 100000, advanced: true },
+];
+/** The transport parameter of the generic source. */
+const TRANSPORT_PARAM = {
+    name: "transport",
+    plainName: "Transport",
+    type: "enum",
+    values: [
+        { value: "query-api", label: "Neo4j Query API" },
+        { value: "bolt", label: "Bolt" },
+        { value: "neptune-https", label: "Neptune Database" },
+        { value: "neptune-analytics", label: "Neptune Analytics" },
+    ],
+};
+/**
+ * The descriptor of the generic `cypher` source. Experimental.
+ * @category Network sources
+ */
+export const CYPHER_DESCRIPTOR = Object.freeze({
+    plainName: "Cypher database",
+    kind: "database",
+    version: 1,
+    auth: ["basic", "bearer", "aws-sigv4"],
+    authRequired: "optional",
+    params: [...CYPHER_PARAMS, TRANSPORT_PARAM],
+});
+/**
+ * The descriptor of the `neo4j` preset. Experimental.
+ * @category Network sources
+ */
+export const NEO4J_DESCRIPTOR = Object.freeze({
+    plainName: "Neo4j",
+    kind: "database",
+    version: 1,
+    auth: ["basic", "bearer"],
+    authRequired: "optional",
+    params: [
+        ...CYPHER_PARAMS,
+        {
+            // no default: a bolt: or bolt+s: endpoint picks Bolt, any other the Query API
+            ...TRANSPORT_PARAM,
+            values: TRANSPORT_PARAM.values?.filter((v) => v.value === "query-api" || v.value === "bolt"),
+        },
+    ],
+    samples: [
+        {
+            id: "neo4j-movies",
+            plainName: "Neo4j demo: movies",
+            endpoint: "https://demo.neo4jlabs.com:7473",
+            params: { database: "movies", mode: "all" },
+            publicLogin: { username: "movies", password: "movies" }, // NOSONAR(S2068): the public login Neo4j publishes for its demo server
+            counts: { nodes: 171, edges: 253 },
+        },
+        {
+            id: "hetionet",
+            plainName: "Hetionet",
+            endpoint: "bolt+s://neo4j.het.io:7687",
+            params: { transport: "bolt", mode: "neighborhood", idProperty: "name", ids: ["Metformin"], depth: 1 },
+            counts: { nodes: 47031, edges: 2250197 },
+            whole: false,
+        },
+    ],
+});
+/**
+ * The descriptor of the `neptune` preset. Experimental.
+ * @category Network sources
+ */
+export const NEPTUNE_DESCRIPTOR = Object.freeze({
+    plainName: "Amazon Neptune",
+    kind: "database",
+    version: 1,
+    auth: ["aws-sigv4"],
+    authRequired: "optional",
+    params: [
+        ...CYPHER_PARAMS,
+        {
+            // no default: a neptune-graph host picks Neptune Analytics, any other Neptune Database
+            ...TRANSPORT_PARAM,
+            values: TRANSPORT_PARAM.values?.filter((v) => v.value.startsWith("neptune")),
+        },
+    ],
+    // Neptune sends no CORS headers (Database), or is not shown to (Analytics)
+    runtimes: { browser: { supported: false, reason: "cors" }, worker: { supported: false, reason: "cors" } },
+});
+//# sourceMappingURL=descriptor.js.map

package/dist/src/sources/cypher/descriptor.js.map

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package/dist/src/sources/cypher/flatten.d.ts

@@ -0,0 +1,72 @@
+/**
+ * The one result flattener of the Cypher source (design section 5): every node and relationship a
+ * result holds -- in a column, a path, a list or a map -- is collected once by its element id, and
+ * written to the sink as nodes (labels in the `labels` column, as the neo4j CSV importer has them)
+ * and directed edges (type in `type`, element id in `id`). A result of scalars only is
+ * E_SOURCE_NOT_A_GRAPH.
+ */
+import { type GraphSink } from "@graphty/graph-format";
+import { type ImportReportBuilder } from "../../common/report.js";
+import { GraphNode, GraphRel } from "./types-map.js";
+/** One query's result, every value already mapped. */
+export interface QueryResult {
+    /** The column names. */
+    readonly fields: readonly string[];
+    /** The rows, one value per column. */
+    readonly rows: readonly (readonly unknown[])[];
+}
+/** The nodes, relationships and degree hints of one or more results, each once. */
+export declare class Collector {
+    readonly nodes: Map<string, GraphNode>;
+    readonly rels: Map<string, GraphRel>;
+    /** Degree hints by the id expression's value, as text. */
+    readonly degrees: Map<string, number>;
+    /**
+     * Collect a result.
+     * @param result - the result
+     * @param hints - whether its `key` / `degree` / `degrees` columns are the generated queries' hints
+     */
+    add(result: QueryResult, hints: boolean): void;
+    /**
+     * Collect every node and relationship inside a value.
+     * @param value - the value
+     */
+    private visit;
+    /**
+     * Whether nothing was collected.
+     * @returns true when no node or relationship was found
+     */
+    get empty(): boolean;
+}
+/**
+ * Fail with E_SOURCE_NOT_A_GRAPH when a result has rows but no node, relationship or path.
+ * @param result - the result
+ * @param collector - what it held
+ * @param report - the load's report
+ */
+export declare function requireGraph(result: QueryResult, collector: Collector, report: ImportReportBuilder): void;
+/**
+ * Write what was collected into the sink. A node already in the sink is updated, not counted again.
+ * @param c - the collector
+ * @param sink - the sink
+ * @param idProperty - the id property, or null
+ * @param report - the load's report
+ * @param signal - the load's signal
+ */
+export declare function writeCollected(c: Collector, sink: GraphSink, idProperty: string | null, report: ImportReportBuilder, signal: AbortSignal): void;
+/**
+ * Code-unit order of two strings, independent of locale.
+ * @param a - one string
+ * @param b - another
+ * @returns negative, zero or positive
+ */
+export declare function compareText(a: string, b: string): number;
+/**
+ * The canonical rows of what was collected: one line per node and relationship, sorted, for the
+ * content hash `validate` compares.
+ * @param c - the collector
+ * @param idProperty - the id property, or null
+ * @returns the lines
+ */
+export declare function canonicalRows(c: Collector, idProperty: string | null): string[];
+//# sourceMappingURL=flatten.d.ts.map

package/dist/src/sources/cypher/flatten.d.ts.map

@@ -0,0 +1 @@
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package/dist/src/sources/cypher/flatten.js

@@ -0,0 +1,279 @@
+/**
+ * The one result flattener of the Cypher source (design section 5): every node and relationship a
+ * result holds -- in a column, a path, a list or a map -- is collected once by its element id, and
+ * written to the sink as nodes (labels in the `labels` column, as the neo4j CSV importer has them)
+ * and directed edges (type in `type`, element id in `id`). A result of scalars only is
+ * E_SOURCE_NOT_A_GRAPH.
+ */
+import { INVALID_INDEX } from "@graphty/graph-format";
+import { throwIfAborted } from "../../common/input.js";
+import { failOn } from "../fail.js";
+import { SOURCE_DEGREE_ATTR } from "../ids.js";
+import { GraphNode, GraphRel } from "./types-map.js";
+/** The column names the neo4j CSV importer gives labels and types; spelled here so the Cypher chunk does not load it. */
+const LABELS_COLUMN = "labels";
+const TYPE_COLUMN = "type";
+/** The labels column, as the neo4j CSV importer declares it. */
+const LABELS_DECL = {
+    name: LABELS_COLUMN,
+    dtype: "list",
+    itemDtype: "dict",
+    nullable: true,
+    role: "labels",
+};
+/** The relationship type column. */
+const TYPE_DECL = { name: TYPE_COLUMN, dtype: "dict", nullable: true, role: "kind" };
+/** The edge id column. */
+const EDGE_ID_DECL = { name: "id", dtype: "string", nullable: true, role: "id" };
+/** The nodes, relationships and degree hints of one or more results, each once. */
+export class Collector {
+    constructor() {
+        this.nodes = new Map();
+        this.rels = new Map();
+        /** Degree hints by the id expression's value, as text. */
+        this.degrees = new Map();
+    }
+    /**
+     * Collect a result.
+     * @param result - the result
+     * @param hints - whether its `key` / `degree` / `degrees` columns are the generated queries' hints
+     */
+    add(result, hints) {
+        const key = hints ? result.fields.indexOf("key") : -1;
+        const degree = hints ? result.fields.indexOf("degree") : -1;
+        const degrees = hints ? result.fields.indexOf("degrees") : -1;
+        for (const row of result.rows) {
+            row.forEach((value, i) => {
+                if (i === degrees && Array.isArray(value)) {
+                    for (const pair of value) {
+                        if (Array.isArray(pair) && typeof pair[1] === "number") {
+                            this.degrees.set(String(pair[0]), pair[1]);
+                        }
+                    }
+                }
+                else if (i !== key && i !== degree) {
+                    this.visit(value);
+                }
+            });
+            if (key >= 0 && degree >= 0 && typeof row[degree] === "number") {
+                this.degrees.set(String(row[key]), row[degree]);
+            }
+        }
+    }
+    /**
+     * Collect every node and relationship inside a value.
+     * @param value - the value
+     */
+    visit(value) {
+        if (value instanceof GraphNode) {
+            this.nodes.set(value.id, value);
+        }
+        else if (value instanceof GraphRel) {
+            this.rels.set(value.id, value);
+        }
+        else if (Array.isArray(value)) {
+            value.forEach((v) => {
+                this.visit(v);
+            });
+        }
+        else if (value !== null && typeof value === "object") {
+            Object.values(value).forEach((v) => {
+                this.visit(v);
+            });
+        }
+    }
+    /**
+     * Whether nothing was collected.
+     * @returns true when no node or relationship was found
+     */
+    get empty() {
+        return this.nodes.size === 0 && this.rels.size === 0;
+    }
+}
+/**
+ * Fail with E_SOURCE_NOT_A_GRAPH when a result has rows but no node, relationship or path.
+ * @param result - the result
+ * @param collector - what it held
+ * @param report - the load's report
+ */
+export function requireGraph(result, collector, report) {
+    if (result.rows.length > 0 && collector.empty) {
+        failOn(report, "E_SOURCE_NOT_A_GRAPH", "the query returned no node, relationship or path", {
+            columns: result.fields,
+        });
+    }
+}
+/**
+ * The id a node gets: its `idProperty` value when it has one, else the server's element id.
+ * @param node - the node
+ * @param idProperty - the id property, or null
+ * @returns the id
+ */
+function nodeIdOf(node, idProperty) {
+    const value = idProperty === null ? undefined : node.properties[idProperty];
+    return typeof value === "string" || typeof value === "number" ? value : node.id;
+}
+/**
+ * A column handle, declared on first use.
+ * @param sink - the sink
+ * @param decl - the declaration
+ * @param domain - node or edge
+ * @returns the handle
+ */
+function column(sink, decl, domain) {
+    const existing = domain === "node" ? sink.nodeColumn(decl.name) : sink.edgeColumn(decl.name);
+    if (existing !== INVALID_INDEX) {
+        return existing;
+    }
+    return domain === "node" ? sink.declareNodeColumn(decl) : sink.declareEdgeColumn(decl);
+}
+/**
+ * Write what was collected into the sink. A node already in the sink is updated, not counted again.
+ * @param c - the collector
+ * @param sink - the sink
+ * @param idProperty - the id property, or null
+ * @param report - the load's report
+ * @param signal - the load's signal
+ */
+export function writeCollected(c, sink, idProperty, report, signal) {
+    if (sink.edgeCount === 0 && !sink.directedLocked && !sink.directed) {
+        sink.setDirected(true);
+    }
+    const ids = writeNodes(c, sink, idProperty, report, signal);
+    writeRels(c, sink, ids, report, signal, c.nodes.size);
+}
+/**
+ * Write the collected nodes into the sink.
+ * @param c - the collector
+ * @param sink - the sink
+ * @param idProperty - the id property, or null
+ * @param report - the load's report
+ * @param signal - the load's signal
+ * @returns each element id's node id
+ */
+function writeNodes(c, sink, idProperty, report, signal) {
+    const ids = new Map();
+    let n = 0;
+    for (const node of c.nodes.values()) {
+        if (n++ % 64 === 0) {
+            throwIfAborted(signal);
+        }
+        const id = nodeIdOf(node, idProperty);
+        ids.set(node.id, id);
+        const degree = c.degrees.get(String(idProperty === null ? node.id : id));
+        try {
+            const fresh = sink.indexOf(id) === INVALID_INDEX;
+            const index = sink.addNodeRecord(id, degree === undefined ? node.properties : { ...node.properties, [SOURCE_DEGREE_ATTR]: degree });
+            sink.setNodeValue(column(sink, LABELS_DECL, "node"), index, node.labels);
+            if (fresh) {
+                report.counts.nodes++;
+            }
+        }
+        catch (err) {
+            report.recordError(err, { element: String(id) });
+            report.counts.skippedNodes++;
+        }
+    }
+    return ids;
+}
+/**
+ * Write the collected relationships into the sink, adding any end the result did not return.
+ * @param c - the collector
+ * @param sink - the sink
+ * @param ids - each element id's node id
+ * @param report - the load's report
+ * @param signal - the load's signal
+ * @param written - how many elements were written before, for the abort check cadence
+ */
+function writeRels(c, sink, ids, report, signal, written) {
+    let n = written;
+    for (const rel of c.rels.values()) {
+        if (n++ % 64 === 0) {
+            throwIfAborted(signal);
+        }
+        // an end the result did not return is known only by its element id
+        const s = ids.get(rel.start) ?? rel.start;
+        const t = ids.get(rel.end) ?? rel.end;
+        try {
+            for (const end of [s, t]) {
+                if (sink.indexOf(end) === INVALID_INDEX) {
+                    sink.addNode(end);
+                    report.counts.nodes++;
+                }
+            }
+            const e = sink.addEdgeRecord(s, t, rel.properties, null);
+            sink.setEdgeValue(column(sink, TYPE_DECL, "edge"), e, rel.type);
+            sink.setEdgeValue(column(sink, EDGE_ID_DECL, "edge"), e, rel.id);
+            report.counts.edges++;
+        }
+        catch (err) {
+            report.recordError(err, { element: `${String(s)} -> ${String(t)}` });
+            report.counts.skippedEdges++;
+        }
+    }
+}
+/**
+ * Code-unit order of two strings, independent of locale.
+ * @param a - one string
+ * @param b - another
+ * @returns negative, zero or positive
+ */
+export function compareText(a, b) {
+    if (a === b) {
+        return 0;
+    }
+    return a < b ? -1 : 1;
+}
+/**
+ * One canonical object member.
+ * @param key - the key
+ * @param value - the value
+ * @returns `"key":value`
+ */
+function member(key, value) {
+    return `${JSON.stringify(key)}:${canonical(value)}`;
+}
+/**
+ * JSON with every object's keys sorted, so equal data spells the same.
+ * @param value - the value
+ * @returns the canonical text
+ */
+function canonical(value) {
+    if (Array.isArray(value)) {
+        return `[${value.map(canonical).join(",")}]`;
+    }
+    if (value !== null && typeof value === "object") {
+        const entries = Object.entries(value).sort(([a], [b]) => compareText(a, b));
+        const members = entries.map(([k, v]) => member(k, v));
+        return `{${members.join(",")}}`;
+    }
+    return JSON.stringify(value) ?? "null";
+}
+/**
+ * The canonical rows of what was collected: one line per node and relationship, sorted, for the
+ * content hash `validate` compares.
+ * @param c - the collector
+ * @param idProperty - the id property, or null
+ * @returns the lines
+ */
+export function canonicalRows(c, idProperty) {
+    const ids = new Map();
+    const lines = [];
+    for (const node of c.nodes.values()) {
+        const id = nodeIdOf(node, idProperty);
+        ids.set(node.id, id);
+        lines.push(canonical(["n", id, [...node.labels].sort(compareText), node.properties]));
+    }
+    for (const rel of c.rels.values()) {
+        lines.push(canonical([
+            "r",
+            rel.id,
+            ids.get(rel.start) ?? rel.start,
+            ids.get(rel.end) ?? rel.end,
+            rel.type,
+            rel.properties,
+        ]));
+    }
+    return lines;
+}
+//# sourceMappingURL=flatten.js.map

package/dist/src/sources/cypher/flatten.js.map

@@ -0,0 +1 @@
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package/dist/src/sources/cypher/index.d.ts

@@ -0,0 +1,33 @@
+/**
+ * `@graphty/graph-io/sources/cypher`: the Cypher source and its `neo4j` and `neptune` presets
+ * (design sections 10, 11, 12.2 and 12.4). One query builder, one result flattener and one type
+ * mapper over four transports: Neo4j's Query API, Bolt (through the optional peer neo4j-driver),
+ * Neptune Database over HTTPS and Neptune Analytics. The presets fix the transports and the server
+ * profile and hold no query code of their own. Experimental.
+ * @module @graphty/graph-io/sources/cypher
+ */
+import { type GraphSource } from "../types.js";
+import { type CypherParams } from "./params.js";
+export { CYPHER_DESCRIPTOR, NEO4J_DESCRIPTOR, NEPTUNE_DESCRIPTOR } from "./descriptor.js";
+export { type CypherParams } from "./params.js";
+export { cypherIdentifier } from "./query-builder.js";
+/**
+ * The generic Cypher source, for any openCypher server: Neo4j over its Query API or Bolt, Neptune
+ * over HTTPS. The transport comes from `params.transport`, else the endpoint (`bolt+s://` is Bolt,
+ * a `neptune-graph` host is Neptune Analytics), else the Query API. Experimental.
+ * @category Network sources
+ */
+export declare const cypherSource: GraphSource<CypherParams>;
+/**
+ * The Neo4j preset: the Query API (Neo4j 5.26 and later, Aura), or Bolt for a `bolt:` or
+ * `bolt+s:` endpoint (any Neo4j; needs the optional peer neo4j-driver). Experimental.
+ * @category Network sources
+ */
+export declare const neo4jSource: GraphSource<CypherParams>;
+/**
+ * The Amazon Neptune preset: Neptune Database over HTTPS, or Neptune Analytics for a
+ * `neptune-graph` host. Node only; sign requests with `credentials.awsSigV4`. Experimental.
+ * @category Network sources
+ */
+export declare const neptuneSource: GraphSource<CypherParams>;
+//# sourceMappingURL=index.d.ts.map

package/dist/src/sources/cypher/index.d.ts.map

@@ -0,0 +1 @@
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