@graphty/graph-io 0.3.43 → 0.3.45

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (674) hide show
  1. package/dist/chunks/approximations-DJMHdDvv.js +40 -0
  2. package/dist/chunks/approximations-DJMHdDvv.js.map +1 -0
  3. package/dist/chunks/block-CPCHkX42.js +2777 -0
  4. package/dist/chunks/block-CPCHkX42.js.map +1 -0
  5. package/dist/chunks/{choose-DvpbdRuz.js → choose--jM0yYCo.js} +3 -2
  6. package/dist/chunks/{choose-DvpbdRuz.js.map → choose--jM0yYCo.js.map} +1 -1
  7. package/dist/chunks/{constants-fT3E8JYY.js → constants-BKwqelYD.js} +6 -2
  8. package/dist/chunks/constants-BKwqelYD.js.map +1 -0
  9. package/dist/chunks/convert-BcQ8_jMo.js +59 -0
  10. package/dist/chunks/convert-BcQ8_jMo.js.map +1 -0
  11. package/dist/chunks/emit-DZy6JgdA.js +3456 -0
  12. package/dist/chunks/emit-DZy6JgdA.js.map +1 -0
  13. package/dist/chunks/{escape-B62ZGM_a.js → escape-CgzxiYPg.js} +44 -21
  14. package/dist/chunks/escape-CgzxiYPg.js.map +1 -0
  15. package/dist/chunks/{export-rKLeGQMo.js → export-BvqAXCKh.js} +196 -792
  16. package/dist/chunks/export-BvqAXCKh.js.map +1 -0
  17. package/dist/chunks/{exporter-yLxKBvLE.js → exporter--Mk9gXCJ.js} +4 -3
  18. package/dist/chunks/{exporter-yLxKBvLE.js.map → exporter--Mk9gXCJ.js.map} +1 -1
  19. package/dist/chunks/{exporter-RVtXVetw.js → exporter-C-9cgZKa.js} +1805 -287
  20. package/dist/chunks/exporter-C-9cgZKa.js.map +1 -0
  21. package/dist/chunks/{exporter-8hLNemFk.js → exporter-DFqJhBnj.js} +133 -74
  22. package/dist/chunks/exporter-DFqJhBnj.js.map +1 -0
  23. package/dist/chunks/{exporter-BWwEuOPT.js → exporter-DteVeJki.js} +22 -12
  24. package/dist/chunks/exporter-DteVeJki.js.map +1 -0
  25. package/dist/chunks/format-BpQBx8MZ.js +676 -0
  26. package/dist/chunks/format-BpQBx8MZ.js.map +1 -0
  27. package/dist/chunks/generic-BGO71QBv.js +1347 -0
  28. package/dist/chunks/generic-BGO71QBv.js.map +1 -0
  29. package/dist/chunks/{importer-C98dpSH4.js → importer-B-9Rc1zO.js} +141 -82
  30. package/dist/chunks/importer-B-9Rc1zO.js.map +1 -0
  31. package/dist/chunks/{importer-D794XUTe.js → importer-BVVR740x.js} +31 -8
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  33. package/dist/chunks/{importer-WrGRZb0N.js → importer-C0AjA3Ax.js} +449 -102
  34. package/dist/chunks/importer-C0AjA3Ax.js.map +1 -0
  35. package/dist/chunks/{importer-BbNb7eNg.js → importer-C7pvJe1L.js} +1398 -129
  36. package/dist/chunks/importer-C7pvJe1L.js.map +1 -0
  37. package/dist/chunks/{importer-xZ-3suY1.js → importer-ClwoVx3O.js} +791 -135
  38. package/dist/chunks/importer-ClwoVx3O.js.map +1 -0
  39. package/dist/chunks/{importer-Ht7LNg8L.js → importer-D0sC_6bO.js} +116 -296
  40. package/dist/chunks/importer-D0sC_6bO.js.map +1 -0
  41. package/dist/chunks/{importer-Dz7tI8Sa.js → importer-EHQk1jbM.js} +617 -115
  42. package/dist/chunks/importer-EHQk1jbM.js.map +1 -0
  43. package/dist/chunks/{json-elements-DKSqpNW1.js → json-elements-DJZRZ6jd.js} +123 -32
  44. package/dist/chunks/json-elements-DJZRZ6jd.js.map +1 -0
  45. package/dist/chunks/lexicon-WMsNddyU.js +509 -0
  46. package/dist/chunks/lexicon-WMsNddyU.js.map +1 -0
  47. package/dist/chunks/{ontology-export-CtRXjg_i.js → ontology-export-G4MqRdux.js} +3 -2
  48. package/dist/chunks/{ontology-export-CtRXjg_i.js.map → ontology-export-G4MqRdux.js.map} +1 -1
  49. package/dist/chunks/{records-Cu4bxYOm.js → records-CiaWZrFH.js} +2 -2
  50. package/dist/chunks/{records-Cu4bxYOm.js.map → records-CiaWZrFH.js.map} +1 -1
  51. package/dist/chunks/styles-DvoFBKCK.js +690 -0
  52. package/dist/chunks/styles-DvoFBKCK.js.map +1 -0
  53. package/dist/chunks/styles-yed-Cz9rLBCP.js +842 -0
  54. package/dist/chunks/styles-yed-Cz9rLBCP.js.map +1 -0
  55. package/dist/chunks/styles-zNTmz5R7.js +2102 -0
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  57. package/dist/chunks/{text-DHOJXnED.js → text-CzJNFOS9.js} +2 -2
  58. package/dist/chunks/{text-DHOJXnED.js.map → text-CzJNFOS9.js.map} +1 -1
  59. package/dist/chunks/units-XMZFIFe1.js +19 -0
  60. package/dist/chunks/units-XMZFIFe1.js.map +1 -0
  61. package/dist/chunks/writer-gQ8kx99H.js +448 -0
  62. package/dist/chunks/writer-gQ8kx99H.js.map +1 -0
  63. package/dist/csv.js +5 -4
  64. package/dist/csv.js.map +1 -1
  65. package/dist/cx.js +1 -1
  66. package/dist/cx2.js +2 -2
  67. package/dist/cys.js +1 -1
  68. package/dist/dot.js +5 -2
  69. package/dist/dot.js.map +1 -1
  70. package/dist/gexf.js +292 -412
  71. package/dist/gexf.js.map +1 -1
  72. package/dist/gml.js +927 -74
  73. package/dist/gml.js.map +1 -1
  74. package/dist/graph-io.js +351 -236
  75. package/dist/graph-io.js.map +1 -1
  76. package/dist/graphml.js +4 -2
  77. package/dist/graphml.js.map +1 -1
  78. package/dist/json.js +1 -1
  79. package/dist/neo4j.js +4 -3
  80. package/dist/neo4j.js.map +1 -1
  81. package/dist/obo.js +1 -1
  82. package/dist/pajek.js +4 -2
  83. package/dist/positions.d.ts +1 -0
  84. package/dist/positions.js +427 -0
  85. package/dist/positions.js.map +1 -0
  86. package/dist/src/common/codes.d.ts +6 -0
  87. package/dist/src/common/codes.d.ts.map +1 -1
  88. package/dist/src/common/codes.js +6 -0
  89. package/dist/src/common/codes.js.map +1 -1
  90. package/dist/src/common/escape.d.ts.map +1 -1
  91. package/dist/src/common/escape.js +4 -2
  92. package/dist/src/common/escape.js.map +1 -1
  93. package/dist/src/common/export.d.ts +10 -0
  94. package/dist/src/common/export.d.ts.map +1 -1
  95. package/dist/src/common/export.js +123 -100
  96. package/dist/src/common/export.js.map +1 -1
  97. package/dist/src/common/input.d.ts.map +1 -1
  98. package/dist/src/common/input.js +8 -1
  99. package/dist/src/common/input.js.map +1 -1
  100. package/dist/src/common/json-elements.d.ts +12 -9
  101. package/dist/src/common/json-elements.d.ts.map +1 -1
  102. package/dist/src/common/json-elements.js +160 -37
  103. package/dist/src/common/json-elements.js.map +1 -1
  104. package/dist/src/common/notes.d.ts +42 -0
  105. package/dist/src/common/notes.d.ts.map +1 -0
  106. package/dist/src/common/notes.js +72 -0
  107. package/dist/src/common/notes.js.map +1 -0
  108. package/dist/src/common/report.d.ts +18 -0
  109. package/dist/src/common/report.d.ts.map +1 -1
  110. package/dist/src/common/report.js +36 -1
  111. package/dist/src/common/report.js.map +1 -1
  112. package/dist/src/common/units.d.ts +24 -0
  113. package/dist/src/common/units.d.ts.map +1 -0
  114. package/dist/src/common/units.js +26 -0
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  116. package/dist/src/common/xml.d.ts +18 -0
  117. package/dist/src/common/xml.d.ts.map +1 -1
  118. package/dist/src/common/xml.js +42 -5
  119. package/dist/src/common/xml.js.map +1 -1
  120. package/dist/src/formats/cx/exporter.d.ts +6 -0
  121. package/dist/src/formats/cx/exporter.d.ts.map +1 -1
  122. package/dist/src/formats/cx/exporter.js +71 -8
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  124. package/dist/src/formats/cx/importer.d.ts +5 -2
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  126. package/dist/src/formats/cx/importer.js +102 -72
  127. package/dist/src/formats/cx/importer.js.map +1 -1
  128. package/dist/src/formats/cx/styles.d.ts +102 -0
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  130. package/dist/src/formats/cx/styles.js +225 -0
  131. package/dist/src/formats/cx/styles.js.map +1 -0
  132. package/dist/src/formats/cx2/exporter.d.ts +5 -0
  133. package/dist/src/formats/cx2/exporter.d.ts.map +1 -1
  134. package/dist/src/formats/cx2/exporter.js +181 -71
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  136. package/dist/src/formats/cx2/importer.d.ts +4 -1
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  140. package/dist/src/formats/cx2/styles.d.ts +18 -0
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  144. package/dist/src/formats/cys/constants.d.ts +2 -0
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  148. package/dist/src/formats/cys/exporter.d.ts +6 -2
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  156. package/dist/src/formats/cys/session.d.ts +2 -0
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  160. package/dist/src/formats/cys/styles.d.ts +38 -0
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  164. package/dist/src/formats/cys/tables.d.ts +8 -3
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  168. package/dist/src/formats/dot/exporter.d.ts +2 -0
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  179. package/dist/src/formats/dot/positions.d.ts +14 -0
  180. package/dist/src/formats/dot/positions.d.ts.map +1 -0
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  183. package/dist/src/formats/dot/styles.d.ts +82 -0
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  194. package/dist/src/formats/gexf/index.d.ts +8 -0
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  649. package/src/styles/notes.ts +165 -0
  650. package/src/styles/plan/classes.ts +166 -0
  651. package/src/styles/plan/continuous.ts +218 -0
  652. package/src/styles/plan/discrete.ts +165 -0
  653. package/src/styles/plan/families.ts +115 -0
  654. package/src/styles/plan/features.ts +234 -0
  655. package/src/styles/plan/index.ts +7 -0
  656. package/src/styles/plan/plan.ts +1129 -0
  657. package/src/styles/plan/resolve.ts +685 -0
  658. package/src/styles/types.ts +814 -0
  659. package/src/styles/vocabulary.ts +172 -0
  660. package/src/types.ts +76 -1
  661. package/dist/chunks/constants-fT3E8JYY.js.map +0 -1
  662. package/dist/chunks/escape-B62ZGM_a.js.map +0 -1
  663. package/dist/chunks/export-rKLeGQMo.js.map +0 -1
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  673. package/dist/chunks/importer-xZ-3suY1.js.map +0 -1
  674. package/dist/chunks/json-elements-DKSqpNW1.js.map +0 -1
@@ -0,0 +1,719 @@
1
+ /**
2
+ * GEXF styles: reading the viz module (`viz:color`, `viz:size`, `viz:shape`, `viz:thickness`) into the neutral
3
+ * style vocabulary with Gephi's defaults, and writing a graph's styles back into the viz module, with graphty's
4
+ * `graphty.styles` block in `<meta>` (in graphty's own XML namespace, which graph-io, NetworkX's `read_gexf` and
5
+ * Gephi's GEXF importer all skip) and the per-element style values the block reads as ordinary attributes.
6
+ */
7
+
8
+ import type { GraphSnapshot } from "@graphty/graph-format";
9
+
10
+ import { explicitWeights } from "../../common/weights.js";
11
+ import { canonColor } from "../../styles/canon/color.js";
12
+ import { canonEnum } from "../../styles/canon/enums.js";
13
+ import { canonNumber } from "../../styles/canon/number.js";
14
+ import type { CanonSite } from "../../styles/canon/site.js";
15
+ import { canonText } from "../../styles/canon/text.js";
16
+ import { StyleApproximations } from "../../styles/io/approximations.js";
17
+ import { blockStyles, parseStyleBlock, STYLE_BLOCK_NAME } from "../../styles/io/block.js";
18
+ import type { ExporterStyleInput } from "../../styles/io/writer.js";
19
+ import { StyleNotes } from "../../styles/notes.js";
20
+ import { styleFingerprint } from "../../styles/plan/features.js";
21
+ import { plainCell, resolveStyles } from "../../styles/plan/resolve.js";
22
+ import type {
23
+ ImporterStyles,
24
+ StyleColumn,
25
+ StyleReadContext,
26
+ StyleRule,
27
+ StyleTarget,
28
+ StyleValue,
29
+ StyleWriteCapabilities,
30
+ } from "../../styles/types.js";
31
+ import type { LossNote } from "../../types.js";
32
+ import { NODE_COLUMNS, VIZ_NAMESPACE } from "./schema.js";
33
+
34
+ /** The column of a node's `label` attribute. */
35
+ const LABEL_COLUMN = NODE_COLUMNS.label;
36
+
37
+ /**
38
+ * The XML namespace of graphty's own elements in a GEXF file (the `graphty.styles` block inside `<meta>`).
39
+ * @category Built-in formats
40
+ */
41
+ export const GRAPHTY_XML_NAMESPACE = "https://graphty.app/ns/gexf";
42
+
43
+ /**
44
+ * What the GEXF writer holds natively: a node's `label` attribute, the viz module's color (with its alpha), size, shape and
45
+ * thickness, and the edge line shape. The block goes into `<meta>`.
46
+ * @category Built-in formats
47
+ */
48
+ export const GEXF_STYLE_CAPABILITIES: StyleWriteCapabilities = Object.freeze({
49
+ node: Object.freeze(["label", "fill", "fillOpacity", "width", "height", "shape", "image"] as const),
50
+ edge: Object.freeze(["color", "opacity", "width", "lineStyle"] as const),
51
+ block: "native",
52
+ });
53
+
54
+ /** Gephi's node fill when a node has no `viz:color` (graphstore NodeImpl), which its edges then take. */
55
+ const GEPHI_NODE_FILL = "#000000";
56
+
57
+ /** The style column marking directed edges, which Gephi draws with an arrow at the target. */
58
+ const DIRECTED_KEY = "directed";
59
+
60
+ /** The style column holding the source node's color of each edge without a color of its own. */
61
+ const SOURCE_COLOR_KEY = "source-color";
62
+ /** The style column of the width Gephi draws an edge with from its weight. */
63
+ const WEIGHT_WIDTH_KEY = "weight-width";
64
+
65
+ /** GEXF's node shapes, by the neutral shape each writes exactly. */
66
+ const NODE_SHAPES: ReadonlyMap<string, string> = new Map([
67
+ ["ellipse", "disc"],
68
+ ["rectangle", "square"],
69
+ ["triangle", "triangle"],
70
+ ["diamond", "diamond"],
71
+ ]);
72
+
73
+ /** The nearest GEXF node shape of the neutral shapes GEXF does not have; anything else is a disc. */
74
+ const NEAREST_NODE_SHAPES: ReadonlyMap<string, string> = new Map([
75
+ ["round-rectangle", "square"],
76
+ ["vee", "triangle"],
77
+ ]);
78
+
79
+ /** GEXF's edge shapes; a dash pattern GEXF does not have is dashed, anything else solid. */
80
+ const EDGE_SHAPES: ReadonlySet<string> = new Set(["solid", "dotted", "dashed", "double"]);
81
+
82
+ /**
83
+ * The GEXF node shape written for a neutral shape.
84
+ * @param shape - the neutral shape
85
+ * @returns the GEXF shape and whether it is exact
86
+ */
87
+ function gexfNodeShape(shape: string): { readonly value: string; readonly exact: boolean } {
88
+ const exact = NODE_SHAPES.get(shape);
89
+ return exact === undefined
90
+ ? { value: NEAREST_NODE_SHAPES.get(shape) ?? "disc", exact: false }
91
+ : { value: exact, exact: true };
92
+ }
93
+
94
+ /**
95
+ * The GEXF edge shape written for a neutral line style.
96
+ * @param line - the neutral line style
97
+ * @returns the GEXF shape and whether it is exact
98
+ */
99
+ function gexfEdgeShape(line: string): { readonly value: string; readonly exact: boolean } {
100
+ if (EDGE_SHAPES.has(line)) {
101
+ return { value: line, exact: true };
102
+ }
103
+ return { value: line === "dash-dot" || line === "long-dash" ? "dashed" : "solid", exact: false };
104
+ }
105
+
106
+ /** The viz-derived columns the reader reads; `shape.uri` is the image of an `image` shape. */
107
+ const VIZ_COLUMNS: Readonly<Record<StyleTarget, readonly string[]>> = {
108
+ node: ["color", "size", "shape", "shape.uri"],
109
+ edge: ["color", "thickness", "shape"],
110
+ };
111
+
112
+ /**
113
+ * A `viz:color` `hex` value as channels: r, g and b 0..255 and an alpha 0..1. Reads `#rgb`, `#rgba`, `#rrggbb` and
114
+ * `#rrggbbaa` (alpha last), with or without the `#`.
115
+ * @param hex - the attribute's value
116
+ * @returns `[r, g, b, a]`, or null when it is not a hex color
117
+ */
118
+ export function canonVizColor(hex: string): [number, number, number, number] | null {
119
+ const text = hex.trim();
120
+ if (!/^#?([0-9a-f]{3,4}|[0-9a-f]{6}|[0-9a-f]{8})$/i.test(text)) {
121
+ return null;
122
+ }
123
+ const c = canonColor(text.startsWith("#") ? text : `#${text}`, "css", {
124
+ notes: new StyleNotes(),
125
+ target: "node",
126
+ property: "fill",
127
+ });
128
+ if (c === null) {
129
+ return null;
130
+ }
131
+ const n = Number.parseInt(c.color.slice(1), 16);
132
+ return [(n >> 16) & 255, (n >> 8) & 255, n & 255, c.alpha];
133
+ }
134
+
135
+ /**
136
+ * A viz column of the snapshot, or null when the column is absent or not viz-derived.
137
+ * @param snapshot - the graph
138
+ * @param target - nodes or edges
139
+ * @param name - the column's fixed name
140
+ * @returns the column's name, or null
141
+ */
142
+ function vizColumn(snapshot: GraphSnapshot, target: StyleTarget, name: string): string | null {
143
+ const col = (target === "node" ? snapshot.nodes : snapshot.edges).get(name);
144
+ return col !== null && col.meta.origin?.namespace === VIZ_NAMESPACE ? name : null;
145
+ }
146
+
147
+ /** What the per-element readers of vizValues() share. */
148
+ interface VizRead {
149
+ readonly table: GraphSnapshot["nodes"];
150
+ readonly target: StyleTarget;
151
+ /** The values of a property, created on first use. */
152
+ readonly column: (property: string) => (StyleValue | null)[];
153
+ /** Where a value of an element was read. */
154
+ readonly site: (i: number, property: string) => CanonSite;
155
+ }
156
+
157
+ /**
158
+ * One target's canonical values from its viz columns and, on a node, its `label` attribute, which Gephi draws.
159
+ * @param snapshot - the graph
160
+ * @param target - nodes or edges
161
+ * @param notes - where problems are noted
162
+ * @param context - the work budget
163
+ * @returns the values per property
164
+ */
165
+ function vizValues(
166
+ snapshot: GraphSnapshot,
167
+ target: StyleTarget,
168
+ notes: StyleNotes,
169
+ context: StyleReadContext,
170
+ ): Record<string, (StyleValue | null)[]> {
171
+ const table = target === "node" ? snapshot.nodes : snapshot.edges;
172
+ const n = target === "node" ? snapshot.nodeCount : snapshot.edgeCount;
173
+ const out: Record<string, (StyleValue | null)[]> = {};
174
+ const viz: VizRead = {
175
+ table,
176
+ target,
177
+ column: (p) => (out[p] ??= new Array<StyleValue | null>(n).fill(null)),
178
+ site: (i, property) => ({ notes, target, property, element: i, budget: context.budget }),
179
+ };
180
+ const color = vizColumn(snapshot, target, "color");
181
+ const size = vizColumn(snapshot, target, target === "node" ? "size" : "thickness");
182
+ const shape = vizColumn(snapshot, target, "shape");
183
+ const uri = target === "node" ? vizColumn(snapshot, target, "shape.uri") : null;
184
+ // Gephi draws the labels of nodes; an edge's label it does not draw
185
+ const label = target === "node" ? table.byRole("label") : null;
186
+ for (let i = 0; i < n; i++) {
187
+ if (label !== null) {
188
+ readLabel(viz, label, i);
189
+ }
190
+ if (color !== null) {
191
+ readVizColor(viz, color, i);
192
+ }
193
+ if (size !== null) {
194
+ readVizSize(viz, size, i);
195
+ }
196
+ // GEXF gives a shape a uri only to name the picture of an `image` shape
197
+ if (shape !== null && readVizShape(viz, shape, i) && uri !== null) {
198
+ readVizImage(viz, uri, i);
199
+ }
200
+ }
201
+ return out;
202
+ }
203
+
204
+ /**
205
+ * Reads one node's label, which Gephi draws.
206
+ * @param viz - the target's reading
207
+ * @param label - the label column
208
+ * @param i - the element
209
+ */
210
+ function readLabel(viz: VizRead, label: NonNullable<ReturnType<GraphSnapshot["nodes"]["byRole"]>>, i: number): void {
211
+ const text = canonText(plainCell(label.value(i)), viz.site(i, "label"));
212
+ if (text !== null) {
213
+ viz.column("label")[i] = text;
214
+ }
215
+ }
216
+
217
+ /**
218
+ * Reads the picture of one node whose viz shape is `image`.
219
+ * @param viz - the target's reading
220
+ * @param uri - the viz shape uri column
221
+ * @param i - the element
222
+ */
223
+ function readVizImage(viz: VizRead, uri: string, i: number): void {
224
+ const v = plainCell(viz.table.value(uri, i));
225
+ if (typeof v === "string" && v.length > 0) {
226
+ viz.column("image")[i] = v;
227
+ }
228
+ }
229
+
230
+ /**
231
+ * Reads one element's viz color: a fill on a node, a color on an edge, with its alpha as an opacity.
232
+ * @param viz - the target's reading
233
+ * @param color - the viz color column
234
+ * @param i - the element
235
+ */
236
+ function readVizColor(viz: VizRead, color: string, i: number): void {
237
+ const v = plainCell(viz.table.value(color, i));
238
+ if (!Array.isArray(v)) {
239
+ return;
240
+ }
241
+ const [fill, opacity] = viz.target === "node" ? ["fill", "fillOpacity"] : ["color", "opacity"];
242
+ const [r, g, b, a = 1] = v as number[];
243
+ const c = canonColor({ r: r * 255, g: g * 255, b: b * 255, a }, "gexf", viz.site(i, fill));
244
+ if (c !== null) {
245
+ viz.column(fill)[i] = c.color;
246
+ if (c.alpha < 1) {
247
+ viz.column(opacity)[i] = c.alpha;
248
+ }
249
+ }
250
+ }
251
+
252
+ /**
253
+ * Reads one element's viz size (a node's width and height) or thickness (an edge's width).
254
+ * @param viz - the target's reading
255
+ * @param size - the viz size or thickness column
256
+ * @param i - the element
257
+ */
258
+ function readVizSize(viz: VizRead, size: string, i: number): void {
259
+ const v = canonNumber(plainCell(viz.table.value(size, i)), viz.site(i, "width"));
260
+ if (v !== null) {
261
+ viz.column("width")[i] = v;
262
+ if (viz.target === "node") {
263
+ viz.column("height")[i] = v;
264
+ }
265
+ }
266
+ }
267
+
268
+ /**
269
+ * Reads one element's viz shape: a node's shape, an edge's line style.
270
+ * @param viz - the target's reading
271
+ * @param shape - the viz shape column
272
+ * @param i - the element
273
+ * @returns whether it is an `image` shape
274
+ */
275
+ function readVizShape(viz: VizRead, shape: string, i: number): boolean {
276
+ const raw = plainCell(viz.table.value(shape, i));
277
+ if (raw === null) {
278
+ return false;
279
+ }
280
+ const kind = viz.target === "node" ? "shape" : "lineStyle";
281
+ viz.column(kind)[i] = canonEnum(kind, raw, "gexf", viz.site(i, kind));
282
+ return typeof raw === "string" && raw.toLowerCase() === "image";
283
+ }
284
+
285
+ /**
286
+ * Whether each edge is directed.
287
+ * @param snapshot - the graph
288
+ * @returns one flag per edge
289
+ */
290
+ function directedEdges(snapshot: GraphSnapshot): boolean[] {
291
+ const out = new Array<boolean>(snapshot.edgeCount).fill(snapshot.directed);
292
+ const col = snapshot.directed ? snapshot.edges.byRole("directed") : null;
293
+ if (col !== null) {
294
+ for (let e = 0; e < snapshot.edgeCount; e++) {
295
+ out[e] = plainCell(col.value(e)) !== false;
296
+ }
297
+ }
298
+ return out;
299
+ }
300
+
301
+ /**
302
+ * The rules Gephi's defaults make per element: an arrow at the target of every directed edge, the source node's
303
+ * color on every edge without a color of its own, and the edge's weight as the thickness of every edge without a
304
+ * thickness of its own (Gephi draws GEXF and its GraphML export the same way).
305
+ * @param snapshot - the graph
306
+ * @param nodeFill - each node's fill, or undefined when no node has one
307
+ * @param edgeColor - each edge's own color, or undefined when no edge has one
308
+ * @param budget - the work budget
309
+ * @param edgeWidth - each edge's own width, or undefined when no edge has one
310
+ * @returns the edge rules and the style columns they read
311
+ */
312
+ export function gephiRules(
313
+ snapshot: GraphSnapshot,
314
+ nodeFill: readonly (StyleValue | null)[] | undefined,
315
+ edgeColor: readonly (StyleValue | null)[] | undefined,
316
+ budget: StyleReadContext["budget"],
317
+ edgeWidth?: readonly (StyleValue | null)[],
318
+ ): { readonly rules: StyleRule[]; readonly columns: Map<string, StyleColumn> } {
319
+ const rules: StyleRule[] = [];
320
+ const columns = new Map<string, StyleColumn>();
321
+ const directed = directedEdges(snapshot);
322
+ if (directed.some(Boolean)) {
323
+ columns.set(
324
+ DIRECTED_KEY,
325
+ directed.map((d) => (d ? true : null)),
326
+ );
327
+ rules.push({
328
+ id: "edge.tool.arrow",
329
+ target: "edge",
330
+ role: "group",
331
+ origin: "tool",
332
+ where: { has: { style: DIRECTED_KEY } },
333
+ set: { targetArrow: "triangle" },
334
+ });
335
+ }
336
+ // Gephi draws an edge without a color in its source node's color. graphty-element cannot bind an edge's color
337
+ // to its source node's drawn color yet, so the color is frozen here; replace this column with that binding once
338
+ // the element has it (tracking issue "graphty-element: bind an edge's color to its source node's drawn color").
339
+ // An undirected edge in a directed graph is one edge in the file and two halves here: Gephi draws it once, in
340
+ // the color of the source the file names, so the second half takes the first half's source.
341
+ const first = firstHalf(snapshot);
342
+ const sourceColor = withoutOwn(
343
+ edgeColor,
344
+ snapshot.edgeCount,
345
+ (e) => nodeFill?.[snapshot.edgeSource(first(e))] ?? GEPHI_NODE_FILL,
346
+ );
347
+ const uncolored = sourceColor.filter((v) => v !== null).length;
348
+ budget.spend("edge", snapshot.edgeCount);
349
+ // Gephi draws an edge as thick as its weight (1 for an edge with none); a width of its own is the file's
350
+ // The weights come from the snapshot's own weights (the role column exists only when some edge has none), read
351
+ // as the shortest decimal of their dtype. A weight of 0 or below is drawn 1 wide, so the edge stays visible.
352
+ const weights = explicitWeights(snapshot);
353
+ const weightWidth = withoutOwn(edgeWidth, snapshot.edgeCount, (e) => {
354
+ const w = Number(weights.text(first(e)) ?? 1);
355
+ return Number.isFinite(w) && w > 0 ? w : 1;
356
+ });
357
+ const unsized = weightWidth.filter((v) => v !== null).length;
358
+ if (unsized > 0) {
359
+ columns.set(WEIGHT_WIDTH_KEY, weightWidth);
360
+ rules.push({
361
+ id: "edge.tool.weight-width",
362
+ target: "edge",
363
+ role: "passthrough",
364
+ origin: "tool",
365
+ where: { has: { style: WEIGHT_WIDTH_KEY } },
366
+ map: { width: { kind: "passthrough", by: { style: WEIGHT_WIDTH_KEY } } },
367
+ facts: { elements: unsized, reason: "EDGE_WEIGHT" },
368
+ });
369
+ }
370
+ if (uncolored > 0) {
371
+ columns.set(SOURCE_COLOR_KEY, sourceColor);
372
+ rules.push({
373
+ id: "edge.tool.source-color",
374
+ target: "edge",
375
+ role: "passthrough",
376
+ origin: "tool",
377
+ where: { has: { style: SOURCE_COLOR_KEY } },
378
+ map: { color: { kind: "passthrough", by: { style: SOURCE_COLOR_KEY } } },
379
+ facts: { elements: uncolored, reason: "SOURCE_NODE_COLOR" },
380
+ });
381
+ }
382
+ return { rules, columns };
383
+ }
384
+
385
+ /**
386
+ * The edge whose source Gephi draws for each edge: an undirected edge in a directed graph is one edge in the file
387
+ * and two halves here, and the second half takes the first half's.
388
+ * @param snapshot - the graph
389
+ * @returns the first half of each edge
390
+ */
391
+ function firstHalf(snapshot: GraphSnapshot): (e: number) => number {
392
+ const pair = snapshot.edges.byRole("pair");
393
+ return (e) => (pair?.isSet(e) === true ? Math.min(e, pair.value(e) as number) : e);
394
+ }
395
+
396
+ /**
397
+ * A default value for every edge without a value of its own.
398
+ * @param own - each edge's own value, or undefined when no edge has one
399
+ * @param count - the edge count
400
+ * @param value - the default of an edge
401
+ * @returns the defaults, null where an edge has its own
402
+ */
403
+ function withoutOwn(
404
+ own: readonly (StyleValue | null)[] | undefined,
405
+ count: number,
406
+ value: (e: number) => StyleValue,
407
+ ): (StyleValue | null)[] {
408
+ const out = new Array<StyleValue | null>(count).fill(null);
409
+ for (let e = 0; e < count; e++) {
410
+ if (own?.[e] === null || own === undefined) {
411
+ out[e] = value(e);
412
+ }
413
+ }
414
+ return out;
415
+ }
416
+
417
+ /**
418
+ * The styles of a GEXF file: each node's label and each element's viz values as Gephi draws them, Gephi's defaults beneath
419
+ * (black size-10 discs), an arrow at the target of every directed edge, and the source node's color on every edge
420
+ * without a color of its own; plus a `graphty.styles` block the file holds in `<meta>`.
421
+ * @param snapshot - the graph the import built
422
+ * @param context - the work budget and the block text the import kept
423
+ * @returns the styles
424
+ */
425
+ export function gexfStyles(snapshot: GraphSnapshot, context: StyleReadContext): ImporterStyles {
426
+ const notes = new StyleNotes();
427
+ const node = vizValues(snapshot, "node", notes, context);
428
+ const edge = vizValues(snapshot, "edge", notes, context);
429
+ const block = typeof context.kept === "string" ? context.kept : null;
430
+ if (block !== null) {
431
+ exactFromBlock(snapshot, block, node, edge);
432
+ }
433
+ const { rules, columns } = gephiRules(snapshot, node.fill, edge.color, context.budget, edge.width);
434
+ return {
435
+ canonical: true,
436
+ dialect: "gexf",
437
+ tool: "gephi",
438
+ units: "relative",
439
+ node: { values: node },
440
+ edge: { values: edge, rules, columns },
441
+ notes: notes.list(),
442
+ opacityInColor: true,
443
+ block,
444
+ readFrom: {
445
+ node: VIZ_COLUMNS.node.filter((name) => vizColumn(snapshot, "node", name) !== null),
446
+ edge: VIZ_COLUMNS.edge.filter((name) => vizColumn(snapshot, "edge", name) !== null),
447
+ },
448
+ };
449
+ }
450
+
451
+ /**
452
+ * For a file graphty wrote: where a viz value is the nearest GEXF value of what the `graphty.styles` block gives (a
453
+ * hexagon written as a disc, a width and height written as one size), the block's exact value is the truth, so a
454
+ * re-import gives the same rules. A value that differs from what graphty wrote (another program edited it) stays
455
+ * the truth.
456
+ * @param snapshot - the graph
457
+ * @param text - the block's text
458
+ * @param node - the node values, changed in place
459
+ * @param edge - the edge values, changed in place
460
+ */
461
+ function exactFromBlock(
462
+ snapshot: GraphSnapshot,
463
+ text: string,
464
+ node: Record<string, (StyleValue | null)[]>,
465
+ edge: Record<string, (StyleValue | null)[]>,
466
+ ): void {
467
+ const parsed = parseStyleBlock(text, styleFingerprint(snapshot));
468
+ const ex = parsed.ok ? blockStyles(parsed.block, snapshot, "gexf") : null;
469
+ if (ex === null) {
470
+ return;
471
+ }
472
+ const exact = (
473
+ values: Record<string, (StyleValue | null)[]>,
474
+ target: StyleTarget,
475
+ property: string,
476
+ written: (v: StyleValue, i: number) => StyleValue | null,
477
+ ): void => {
478
+ const native = values[property];
479
+ if (native === undefined) {
480
+ return;
481
+ }
482
+ const want = resolveStyles(ex, target, property as never, snapshot);
483
+ for (let i = 0; i < native.length; i++) {
484
+ const w = want[i];
485
+ // a size is written from the width and the height together: one the block leaves unset reads back too
486
+ const writable = w !== null || property === "width" || property === "height";
487
+ if (writable && native[i] !== w && native[i] !== null && native[i] === written(w as StyleValue, i)) {
488
+ native[i] = w;
489
+ }
490
+ }
491
+ };
492
+ const width = resolveStyles(ex, "node", "width", snapshot);
493
+ const height = resolveStyles(ex, "node", "height", snapshot);
494
+ const size = (i: number): StyleValue | null => {
495
+ const w = width[i];
496
+ const h = height[i];
497
+ return typeof w === "number" && typeof h === "number" ? Math.max(w, h) : (w ?? h);
498
+ };
499
+ const read = new Map([
500
+ ["disc", "ellipse"],
501
+ ["square", "rectangle"],
502
+ ]);
503
+ exact(node, "node", "shape", (v) => {
504
+ const written = gexfNodeShape(String(v)).value;
505
+ return read.get(written) ?? written;
506
+ });
507
+ exact(edge, "edge", "lineStyle", (v) => gexfEdgeShape(String(v)).value);
508
+ exact(node, "node", "width", (_v, i) => size(i));
509
+ exact(node, "node", "height", (_v, i) => size(i));
510
+ }
511
+
512
+ // ============================================================ writing
513
+
514
+ /** A GEXF export with styles worked out. */
515
+ export interface GexfStyledExport {
516
+ /** The graph to write: the viz-derived columns the styles replace removed, the tagged style values added. */
517
+ readonly snapshot: GraphSnapshot;
518
+ /** The `<meta>` child holding the block. */
519
+ readonly blockElement: string;
520
+ /** The viz elements of one node from the styles. */
521
+ node(row: number, indent: string): string;
522
+ /** The viz elements of one edge from the styles. */
523
+ edge(row: number, indent: string): string;
524
+ /** W_STYLE_APPROXIMATED for every value written as the nearest one GEXF has. */
525
+ readonly notes: readonly LossNote[];
526
+ }
527
+
528
+ /**
529
+ * The dtype a tagged column is written with: numbers, booleans or text (a mixed column as text).
530
+ * @param col - the values
531
+ * @returns the dtype
532
+ */
533
+ function tagDtype(col: StyleColumn): "f64" | "bool" | "string" {
534
+ const kinds = new Set(col.filter((v) => v !== null).map((v) => typeof v));
535
+ if (kinds.size === 1 && kinds.has("number")) {
536
+ return "f64";
537
+ }
538
+ return kinds.size === 1 && kinds.has("boolean") ? "bool" : "string";
539
+ }
540
+
541
+ /**
542
+ * Works out a GEXF export with styles: the snapshot to write, the viz elements of each element from what graphty
543
+ * draws, the block element and the approximations.
544
+ * @param snapshot - the graph handed to the exporter
545
+ * @param input - the styles, or undefined when none are written
546
+ * @returns the styled export, or null without styles
547
+ */
548
+ export function gexfStyledExport(
549
+ snapshot: GraphSnapshot,
550
+ input: ExporterStyleInput | undefined,
551
+ ): GexfStyledExport | null {
552
+ if (input === undefined) {
553
+ return null;
554
+ }
555
+ const p = (target: StyleTarget, property: string): readonly (StyleValue | null)[] =>
556
+ input.picture(target, property as never);
557
+ const fill = p("node", "fill");
558
+ const fillOpacity = p("node", "fillOpacity");
559
+ const image = p("node", "image");
560
+ const color = p("edge", "color");
561
+ const opacity = p("edge", "opacity");
562
+ const thickness = p("edge", "width");
563
+ const height = p("node", "height");
564
+ // the approximations are counted once, up front, so check() reports them before anything is written
565
+ const approximated = new StyleApproximations();
566
+ const nodeShapes = p("node", "shape").map((s, i) => gexfShapeOf(s, typeof image[i] === "string", approximated));
567
+ const nodeSizes = p("node", "width").map((w, i) => gexfSizeOf(w, height[i], approximated));
568
+ const edgeShapes = p("edge", "lineStyle").map((s) => gexfLineOf(s, approximated));
569
+ return {
570
+ snapshot: withTagColumns(snapshot, input),
571
+ blockElement: `<graphty:styles xmlns:graphty="${GRAPHTY_XML_NAMESPACE}" name="${STYLE_BLOCK_NAME}">${escapeXml(input.block)}</graphty:styles>`,
572
+ notes: approximated.notes("GEXF"),
573
+ node(i, indent) {
574
+ const size = nodeSizes[i];
575
+ const s = nodeShapes[i];
576
+ return (
577
+ colorElement(fill[i], fillOpacity[i], indent) +
578
+ (size === null ? "" : `${indent}<viz:size value="${String(size)}"/>\n`) +
579
+ shapeElement(s, s === "image" ? String(image[i]) : null, indent)
580
+ );
581
+ },
582
+ edge(e, indent) {
583
+ const w = thickness[e];
584
+ return (
585
+ colorElement(color[e], opacity[e], indent) +
586
+ (typeof w === "number" ? `${indent}<viz:thickness value="${String(w)}"/>\n` : "") +
587
+ shapeElement(edgeShapes[e], null, indent)
588
+ );
589
+ },
590
+ };
591
+ }
592
+
593
+ /**
594
+ * The snapshot to write: the viz columns the styles replace removed, the tagged style values and the drawn labels
595
+ * added.
596
+ * @param snapshot - the graph handed to the exporter
597
+ * @param input - the styles
598
+ * @returns the snapshot
599
+ */
600
+ function withTagColumns(snapshot: GraphSnapshot, input: ExporterStyleInput): GraphSnapshot {
601
+ const out = snapshot.withColumns();
602
+ for (const target of ["node", "edge"] as const) {
603
+ const table = target === "node" ? out.nodes : out.edges;
604
+ for (const name of VIZ_COLUMNS[target]) {
605
+ if (table.get(name)?.meta.origin?.namespace === VIZ_NAMESPACE) {
606
+ table.remove(name);
607
+ }
608
+ }
609
+ for (const [name, col] of input.tags[target]) {
610
+ const dtype = tagDtype(col);
611
+ table.set(name, dtype === "string" ? col.map((v) => (v === null ? null : String(v))) : col, { dtype });
612
+ }
613
+ }
614
+ // a node's label attribute is the label Gephi draws
615
+ const label = input.picture("node", "label").map((v) => (typeof v === "string" ? v : null));
616
+ out.nodes.set(LABEL_COLUMN, label, { dtype: "string", role: "label" }, { replaceRole: true });
617
+ return out;
618
+ }
619
+
620
+ /**
621
+ * A node's GEXF shape. A node with a picture is an `image` shape, the only shape GEXF gives a uri: another shape is
622
+ * not written.
623
+ * @param s - the node's shape
624
+ * @param pictured - whether the node has a picture
625
+ * @param approximated - where approximations are counted
626
+ * @returns the shape, or null for none
627
+ */
628
+ function gexfShapeOf(s: StyleValue | null, pictured: boolean, approximated: StyleApproximations): string | null {
629
+ if (pictured) {
630
+ if (typeof s === "string" && s !== "other:image") {
631
+ approximated.add("node", "shape", s);
632
+ }
633
+ return "image";
634
+ }
635
+ if (typeof s !== "string") {
636
+ return null;
637
+ }
638
+ const g = gexfNodeShape(s);
639
+ if (!g.exact) {
640
+ approximated.add("node", "shape", s);
641
+ }
642
+ return g.value;
643
+ }
644
+
645
+ /**
646
+ * An edge's GEXF shape.
647
+ * @param s - the edge's line style
648
+ * @param approximated - where approximations are counted
649
+ * @returns the shape, or null for none
650
+ */
651
+ function gexfLineOf(s: StyleValue | null, approximated: StyleApproximations): string | null {
652
+ if (typeof s !== "string") {
653
+ return null;
654
+ }
655
+ const g = gexfEdgeShape(s);
656
+ if (!g.exact) {
657
+ approximated.add("edge", "lineStyle", s);
658
+ }
659
+ return g.value;
660
+ }
661
+
662
+ /**
663
+ * A node's GEXF size: one value, the larger of a width and height that differ.
664
+ * @param w - the node's width
665
+ * @param h - its height
666
+ * @param approximated - where approximations are counted
667
+ * @returns the size, or null for none
668
+ */
669
+ function gexfSizeOf(w: StyleValue | null, h: StyleValue | null, approximated: StyleApproximations): number | null {
670
+ if (typeof w === "number" && typeof h === "number" && w !== h) {
671
+ approximated.add("node", w > h ? "height" : "width", `${String(w)} x ${String(h)}`);
672
+ return Math.max(w, h);
673
+ }
674
+ if (typeof w === "number") {
675
+ return w;
676
+ }
677
+ return typeof h === "number" ? h : null;
678
+ }
679
+
680
+ /**
681
+ * A `<viz:color>` element.
682
+ * @param hex - the color, `#rrggbb`
683
+ * @param alpha - its opacity
684
+ * @param indent - the indentation
685
+ * @returns the element, "" without a color
686
+ */
687
+ function colorElement(hex: StyleValue | null, alpha: StyleValue | null, indent: string): string {
688
+ if (typeof hex !== "string") {
689
+ return "";
690
+ }
691
+ const n = Number.parseInt(hex.slice(1), 16);
692
+ const a = typeof alpha === "number" && alpha !== 1 ? ` a="${String(alpha)}"` : "";
693
+ return `${indent}<viz:color r="${String((n >> 16) & 255)}" g="${String((n >> 8) & 255)}" b="${String(n & 255)}"${a}/>\n`;
694
+ }
695
+
696
+ /**
697
+ * A `<viz:shape>` element.
698
+ * @param shape - the GEXF shape, or null
699
+ * @param uri - the picture of an `image` shape, or null
700
+ * @param indent - the indentation
701
+ * @returns the element, "" without a shape
702
+ */
703
+ function shapeElement(shape: string | null, uri: string | null, indent: string): string {
704
+ if (shape === null) {
705
+ return "";
706
+ }
707
+ return uri === null
708
+ ? `${indent}<viz:shape value="${shape}"/>\n`
709
+ : `${indent}<viz:shape value="${shape}" uri="${escapeXml(uri)}"/>\n`;
710
+ }
711
+
712
+ /**
713
+ * Text as XML character data or an attribute value.
714
+ * @param text - the text
715
+ * @returns the escaped text
716
+ */
717
+ function escapeXml(text: string): string {
718
+ return text.replaceAll("&", "&amp;").replaceAll("<", "&lt;").replaceAll(">", "&gt;").replaceAll('"', "&quot;");
719
+ }