@graphty/graph-io 0.3.40 → 0.3.42

package/dist/obo.js

@@ -1,4 +1,4 @@
-import { O, a, b, o, c } from "./chunks/exporter-SFYkDzD0.js";
+import { O, a, b, o, c } from "./chunks/exporter-yLxKBvLE.js";
 export {
   O as OBO_CAPABILITIES,
   a as OBO_ISSUE,

package/dist/pajek.js

@@ -1,4 +1,4 @@
-import { P, a, p, b } from "./chunks/importer-AjwOJrn2.js";
+import { P, a, p, b } from "./chunks/importer-Dz7tI8Sa.js";
 export {
   P as PAJEK_ISSUE,
   a as PAJEK_LOSS,

package/dist/src/children.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"children.d.ts","sourceRoot":"","sources":["../../src/children.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;GAcG;AAEH,OAAO,EAAE,KAAK,MAAM,EAAE,KAAK,aAAa,EAAiB,MAAM,uBAAuB,CAAC;AAEvF;;;GAGG;AACH,MAAM,MAAM,eAAe,GAAG,QAAQ,GAAG,SAAS,CAAC;AAEnD;;;GAGG;AACH,MAAM,WAAW,eAAe;IAC5B;;;;;OAKG;IACH,QAAQ,CAAC,MAAM,CAAC,EAAE,eAAe,GAAG,MAAM,GAAG,MAAM,GAAG,IAAI,GAAG,SAAS,CAAC;CAC1E;AAED;;;GAGG;AACH,MAAM,WAAW,eAAe;IAC5B,iHAAiH;IACjH,QAAQ,CAAC,KAAK,EAAE,WAAW,CAAC;IAC5B,mGAAmG;IACnG,QAAQ,CAAC,KAAK,EAAE,WAAW,CAAC;IAC5B,6CAA6C;IAC7C,QAAQ,CAAC,SAAS,EAAE,OAAO,CAAC;CAC/B;AAED;;;;GAIG;AACH,qBAAa,WAAW;IACpB,sDAAsD;IACtD,QAAQ,CAAC,SAAS,EAAE,MAAM,CAAC;IAC3B,iHAAiH;IACjH,QAAQ,CAAC,MAAM,EAAE,WAAW,CAAC;IAC7B,gEAAgE;IAChE,QAAQ,CAAC,QAAQ,EAAE,WAAW,CAAC;IAC/B,wDAAwD;IACxD,QAAQ,CAAC,KAAK,EAAE,WAAW,CAAC;IAC5B,wEAAwE;IACxE,QAAQ,CAAC,SAAS,EAAE,MAAM,CAAC;IAC3B,2FAA2F;IAC3F,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAC;IACzB,6FAA6F;IAC7F,QAAQ,CAAC,WAAW,EAAE,MAAM,CAAC;IAC7B,uFAAuF;IACvF,QAAQ,CAAC,MAAM,EAAE,MAAM,GAAG,IAAI,CAAC;IAE/B,OAAO,CAAC,QAAQ,CAAC,WAAW,CAAc;IAE1C;;;;;;;;OAQG;gBAEC,SAAS,EAAE,MAAM,EACjB,MAAM,EAAE,WAAW,EACnB,QAAQ,EAAE,WAAW,EACrB,WAAW,EAAE,WAAW,EACxB,OAAO,EAAE,MAAM,EACf,MAAM,EAAE,MAAM,GAAG,IAAI;IA0BzB;;;;OAIG;IACH,UAAU,CAAC,IAAI,EAAE,MAAM,GAAG,WAAW;IAIrC;;;;OAIG;IACH,UAAU,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM;IAIhC;;;;OAIG;IACH,WAAW,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO;IAIlC;;;;OAIG;IACH,aAAa,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM;IAInC;;;;OAIG;IACH,MAAM,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO;IAI7B;;;OAGG;IACH,OAAO,IAAI,OAAO;IAIlB;;;;;;OAMG;IACH,UAAU,IAAI,eAAe;IAmD7B;;;OAGG;IACH,OAAO,CAAC,cAAc;CAwBzB;AAED;;;;;;GAMG;AACH,wBAAgB,WAAW,CAAC,QAAQ,EAAE,aAAa,EAAE,OAAO,GAAE,eAAoB,GAAG,WAAW,CAG/F;AAED;;;;;;;GAOG;AACH,wBAAgB,kBAAkB,CAAC,SAAS,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,IAAI,GAAG,WAAW,CAoDxF"}
+{"version":3,"file":"children.d.ts","sourceRoot":"","sources":["../../src/children.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;GAcG;AAEH,OAAO,EAAE,KAAK,MAAM,EAAE,KAAK,aAAa,EAAkC,MAAM,uBAAuB,CAAC;AAExG;;;GAGG;AACH,MAAM,MAAM,eAAe,GAAG,QAAQ,GAAG,SAAS,CAAC;AAEnD;;;GAGG;AACH,MAAM,WAAW,eAAe;IAC5B;;;;;OAKG;IACH,QAAQ,CAAC,MAAM,CAAC,EAAE,eAAe,GAAG,MAAM,GAAG,MAAM,GAAG,IAAI,GAAG,SAAS,CAAC;CAC1E;AAED;;;GAGG;AACH,MAAM,WAAW,eAAe;IAC5B,iHAAiH;IACjH,QAAQ,CAAC,KAAK,EAAE,WAAW,CAAC;IAC5B,mGAAmG;IACnG,QAAQ,CAAC,KAAK,EAAE,WAAW,CAAC;IAC5B,6CAA6C;IAC7C,QAAQ,CAAC,SAAS,EAAE,OAAO,CAAC;CAC/B;AAED;;;;GAIG;AACH,qBAAa,WAAW;IACpB,sDAAsD;IACtD,QAAQ,CAAC,SAAS,EAAE,MAAM,CAAC;IAC3B,iHAAiH;IACjH,QAAQ,CAAC,MAAM,EAAE,WAAW,CAAC;IAC7B,gEAAgE;IAChE,QAAQ,CAAC,QAAQ,EAAE,WAAW,CAAC;IAC/B,wDAAwD;IACxD,QAAQ,CAAC,KAAK,EAAE,WAAW,CAAC;IAC5B,wEAAwE;IACxE,QAAQ,CAAC,SAAS,EAAE,MAAM,CAAC;IAC3B,2FAA2F;IAC3F,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAC;IACzB,6FAA6F;IAC7F,QAAQ,CAAC,WAAW,EAAE,MAAM,CAAC;IAC7B,uFAAuF;IACvF,QAAQ,CAAC,MAAM,EAAE,MAAM,GAAG,IAAI,CAAC;IAE/B,OAAO,CAAC,QAAQ,CAAC,WAAW,CAAc;IAE1C;;;;;;;;OAQG;gBAEC,SAAS,EAAE,MAAM,EACjB,MAAM,EAAE,WAAW,EACnB,QAAQ,EAAE,WAAW,EACrB,WAAW,EAAE,WAAW,EACxB,OAAO,EAAE,MAAM,EACf,MAAM,EAAE,MAAM,GAAG,IAAI;IA0BzB;;;;OAIG;IACH,UAAU,CAAC,IAAI,EAAE,MAAM,GAAG,WAAW;IAIrC;;;;OAIG;IACH,UAAU,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM;IAIhC;;;;OAIG;IACH,WAAW,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO;IAIlC;;;;OAIG;IACH,aAAa,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM;IAInC;;;;OAIG;IACH,MAAM,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO;IAI7B;;;OAGG;IACH,OAAO,IAAI,OAAO;IAIlB;;;;;;OAMG;IACH,UAAU,IAAI,eAAe;IAmD7B;;;OAGG;IACH,OAAO,CAAC,cAAc;CAwBzB;AAED;;;;;;GAMG;AACH,wBAAgB,WAAW,CAAC,QAAQ,EAAE,aAAa,EAAE,OAAO,GAAE,eAAoB,GAAG,WAAW,CAG/F;AAED;;;;;;;GAOG;AACH,wBAAgB,kBAAkB,CAAC,SAAS,EAAE,MAAM,EAAE,MAAM,EAAE,MAAM,GAAG,IAAI,GAAG,WAAW,CA6BxF"}

package/dist/src/children.js

@@ -211,7 +211,6 @@ export function childrenFromColumn(nodeCount, column) {
     let dropped = 0;
     const references = [];
     if (column !== null) {
-        const rows = Math.min(column.length, nodeCount);
         const keep = (child, parent) => {
             if (!Number.isInteger(parent) || parent === INVALID_INDEX || parent >= nodeCount || parent === child) {
                 dropped++;
@@ -221,32 +220,9 @@ export function childrenFromColumn(nodeCount, column) {
             rowPtr[parent + 1]++;
             parentCount[child]++;
         };
-        if (column.dtype === "u32") {
-            const { data } = column;
-            for (let i = 0; i < rows; i++) {
-                if (column.isSet(i)) {
-                    keep(i, data[i]);
-                }
-            }
-        }
-        else if (column.dtype === "list") {
-            for (let i = 0; i < rows; i++) {
-                if (!column.isSet(i)) {
-                    continue;
-                }
-                for (const item of column.sliceOf(i)) {
-                    if (typeof item === "number") {
-                        keep(i, item);
-                    }
-                    else {
-                        dropped++;
-                    }
-                }
-            }
-        }
-        else {
-            throw new TypeError(`a containment column must be u32 or a list of u32, found ${column.dtype} column "${column.meta.name}"`);
-        }
+        // keep() counts into `dropped` while it runs, so add the non-numeric items after the call
+        const nonNumeric = readContainment(column, Math.min(column.length, nodeCount), keep);
+        dropped += nonNumeric;
     }
     for (let u = 0; u < nodeCount; u++) {
         rowPtr[u + 1] += rowPtr[u];
@@ -259,6 +235,53 @@ export function childrenFromColumn(nodeCount, column) {
     }
     return new ChildrenCsr(nodeCount, rowPtr, children, parentCount, dropped, column);
 }
+/**
+ * Hand every (child, parent) reference of the first `rows` rows of a containment column to `keep`,
+ * in ascending child order.
+ * @param column - a u32 `parent`-shaped column or a list-of-u32 `parents`-shaped column
+ * @param rows - how many rows to read
+ * @param keep - receives each reference
+ * @returns how many list items were dropped for not being a number
+ */
+function readContainment(column, rows, keep) {
+    if (column.dtype === "u32") {
+        const { data } = column;
+        for (let i = 0; i < rows; i++) {
+            if (column.isSet(i)) {
+                keep(i, data[i]);
+            }
+        }
+        return 0;
+    }
+    if (column.dtype === "list") {
+        return readParentLists(column, rows, keep);
+    }
+    throw new TypeError(`a containment column must be u32 or a list of u32, found ${column.dtype} column "${column.meta.name}"`);
+}
+/**
+ * Hand every numeric item of a `parents`-shaped list column to `keep`.
+ * @param column - the list column
+ * @param rows - how many rows to read
+ * @param keep - receives each reference
+ * @returns how many items were not numbers
+ */
+function readParentLists(column, rows, keep) {
+    let dropped = 0;
+    for (let i = 0; i < rows; i++) {
+        if (!column.isSet(i)) {
+            continue;
+        }
+        for (const item of column.sliceOf(i)) {
+            if (typeof item === "number") {
+                keep(i, item);
+            }
+            else {
+                dropped++;
+            }
+        }
+    }
+    return dropped;
+}
 /**
  * The column a ChildrenOptions selects.
  * @param snapshot - the snapshot

package/dist/src/children.js.map

@@ -1 +1 @@
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package/dist/src/common/attributes.d.ts.map

@@ -1 +1 @@
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package/dist/src/common/attributes.js

@@ -39,24 +39,7 @@ export const DICT_SAMPLE_ROWS = 1024;
 export function declareAttribute(input) {
     const issues = [];
     const listSyntax = input.listSyntax ?? "gexf";
-    let spec;
-    if (input.type === null) {
-        spec = stringSpec(null);
-    }
-    else {
-        const mapped = mapDeclaredType(input.format, input.type, input.long);
-        if (mapped === null) {
-            spec = stringSpec(input.type);
-            issues.push({
-                category: "unsupported",
-                code: UNKNOWN_TYPE_CODE,
-                message: `${input.format} type "${input.type}" is not supported; values kept as text`,
-            });
-        }
-        else {
-            spec = mapped;
-        }
-    }
+    let spec = declaredSpec(input, issues);
     const { name, renamed } = resolveName(input);
     if (renamed) {
         issues.push({
@@ -88,21 +71,7 @@ export function declareAttribute(input) {
     }
     const optionsText = input.optionsText ?? null;
     if (optionsText !== null) {
-        try {
-            const options = splitListText(optionsText, listSyntax).map((item) => parseItem(item, spec));
-            decl.options = options;
-            if (spec.dtype === "string" && !spec.list && options.every((o) => typeof o === "string")) {
-                decl.dtype = "dict";
-                spec = { ...spec, dtype: "dict" };
-            }
-        }
-        catch (err) {
-            issues.push({
-                category: "validation-error",
-                code: BAD_OPTIONS_CODE,
-                message: `options "${optionsText}" of attribute "${name}" do not parse as ${spec.declared}: ${messageOf(err)}`,
-            });
-        }
+        spec = declareOptions(decl, spec, optionsText, listSyntax, issues);
     }
     const defaultText = input.defaultText ?? null;
     if (defaultText !== null) {
@@ -120,6 +89,56 @@ export function declareAttribute(input) {
     const companion = spec.temporal !== null && !spec.list ? timeTextCompanion(name) : null;
     return { decl, spec, listSyntax, companion, renamed, issues };
 }
+/**
+ * The value spec of a declared type: string for no type, string with UNKNOWN_TYPE_CODE for a type
+ * the format does not define.
+ * @param input - what the file declares
+ * @param issues - receives the unknown-type warning
+ * @returns the spec
+ */
+function declaredSpec(input, issues) {
+    if (input.type === null) {
+        return stringSpec(null);
+    }
+    const mapped = mapDeclaredType(input.format, input.type, input.long);
+    if (mapped !== null) {
+        return mapped;
+    }
+    issues.push({
+        category: "unsupported",
+        code: UNKNOWN_TYPE_CODE,
+        message: `${input.format} type "${input.type}" is not supported; values kept as text`,
+    });
+    return stringSpec(input.type);
+}
+/**
+ * Put the parsed options of an attribute on its declaration; a plain string attribute whose
+ * options are all strings becomes a dict column.
+ * @param decl - the declaration to complete
+ * @param spec - the value spec
+ * @param optionsText - the options text
+ * @param listSyntax - the list syntax the options are split with
+ * @param issues - receives BAD_OPTIONS_CODE when the options do not parse
+ * @returns the spec, with dtype dict when the column became a dict
+ */
+function declareOptions(decl, spec, optionsText, listSyntax, issues) {
+    try {
+        const options = splitListText(optionsText, listSyntax).map((item) => parseItem(item, spec));
+        decl.options = options;
+        if (spec.dtype === "string" && !spec.list && options.every((o) => typeof o === "string")) {
+            decl.dtype = "dict";
+            return { ...spec, dtype: "dict" };
+        }
+    }
+    catch (err) {
+        issues.push({
+            category: "validation-error",
+            code: BAD_OPTIONS_CODE,
+            message: `options "${optionsText}" of attribute "${decl.name}" do not parse as ${spec.declared}: ${messageOf(err)}`,
+        });
+    }
+    return spec;
+}
 /**
  * Parse a value text by a declaration: a scalar, or a list split by the syntax with each item
  * parsed by the item kind.
@@ -210,19 +229,12 @@ export function declareResolved(sink, domain, decl, report, where) {
                 throw err;
             }
             if (err.code === "E_COLUMN_EXISTS" && !renamed) {
-                const taken = takenIn(sink, domain);
-                const id = current.origin?.id ?? null;
-                const name = uniqueColumnName(current.name, id, taken);
-                report.warning("coercion", COLUMN_RENAMED_CODE, `${domain} column "${current.name}" renamed to "${name}": the sink already holds that name with another shape`, { ...where, element: where?.element ?? current.name });
-                current = { ...current, name };
+                current = renameColumn(sink, domain, current, report, where);
                 renamed = true;
                 continue;
             }
             if (err.code === "E_DUPLICATE_ROLE" && current.role !== undefined && !roleDropped) {
-                const holder = typeof err.details.holder === "string" ? err.details.holder : "another column";
-                report.warning("coercion", ROLE_TAKEN_CODE, `${domain} column "${current.name}" loses the ${current.role} role: "${holder}" already holds it`, { ...where, element: where?.element ?? current.name });
-                const { role: _role, ...withoutRole } = current;
-                current = withoutRole;
+                current = dropRole(err, domain, current, current.role, report, where);
                 roleDropped = true;
                 continue;
             }
@@ -230,6 +242,38 @@ export function declareResolved(sink, domain, decl, report, where) {
         }
     }
 }
+/**
+ * The declaration under a name the sink does not hold yet, recording W_COLUMN_RENAMED.
+ * @param sink - the sink
+ * @param domain - node or edge
+ * @param decl - the declaration whose name clashed
+ * @param report - the report
+ * @param where - the line and element, when known
+ * @returns the renamed declaration
+ */
+function renameColumn(sink, domain, decl, report, where) {
+    const taken = takenIn(sink, domain);
+    const id = decl.origin?.id ?? null;
+    const name = uniqueColumnName(decl.name, id, taken);
+    report.warning("coercion", COLUMN_RENAMED_CODE, `${domain} column "${decl.name}" renamed to "${name}": the sink already holds that name with another shape`, { ...where, element: where?.element ?? decl.name });
+    return { ...decl, name };
+}
+/**
+ * The declaration without the role another column holds, recording W_ROLE_TAKEN.
+ * @param err - the sink's E_DUPLICATE_ROLE error
+ * @param domain - node or edge
+ * @param decl - the declaration whose role clashed
+ * @param role - its role
+ * @param report - the report
+ * @param where - the line and element, when known
+ * @returns the declaration without its role
+ */
+function dropRole(err, domain, decl, role, report, where) {
+    const holder = typeof err.details.holder === "string" ? err.details.holder : "another column";
+    report.warning("coercion", ROLE_TAKEN_CODE, `${domain} column "${decl.name}" loses the ${role} role: "${holder}" already holds it`, { ...where, element: where?.element ?? decl.name });
+    const { role: _role, ...withoutRole } = decl;
+    return withoutRole;
+}
 /**
  * Declare the companion text column of a temporal column. A table holds at
  * most one column per role, so when another companion already carries `timeText` this one is

package/dist/src/common/attributes.js.map

@@ -1 +1 @@
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package/dist/src/common/input.d.ts.map

@@ -1 +1 @@
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