@graphty/graph-io 0.3.28 → 0.3.29

package/dist/chunks/{exporter-Cl021ZIE.js.map → exporter-Cy_1da4c.js.map}

@@ -1 +1 @@
-{"version":3,"file":"exporter-Cl021ZIE.js","sources":["../../src/formats/cx2/exporter.ts"],"sourcesContent":["/**\n * The CX2 exporter (design/graph-io/cytoscape-and-obo/design.md section 1.3; graphty issue #307):\n * writes a snapshot as one CX2 document -- the descriptor, the pre-metadata, one\n * `attributeDeclarations` block (aliases from `origin.id`, defaults from `meta.default`),\n * `networkAttributes`, `nodes` (x / y from the position with y flipped back to screen coordinates,\n * `z` from the `z` column), `edges`, the `cx2.bypass` columns as `nodeBypasses` / `edgeBypasses`,\n * the opaque aspects a CX2 import kept (which returns its own style rules) and `status`.\n *\n * What CX2 cannot hold is announced by check() before anything is written: every edge is\n * directed (W_CX2_UNDIRECTED_AS_DIRECTED, W_MUTUAL_EXPANDED), node ids are integers (E_ID_CHARSET\n * unless `sanitizeIds: \"mangle\"`, which keeps the original in the `graphty:originalId` attribute\n * the importer restores), nested values are written as JSON text (W_CX2_JSON_AS_STRING), NaN and\n * the infinities as null (W_CX2_NONFINITE_AS_NULL), and the generic notes of checkCapabilities().\n */\n\nimport { type Column, GraphFormatError, type GraphSnapshot } from \"@graphty/graph-format\";\n\nimport {\n    aspectBlock,\n    declaredType,\n    directionNotes,\n    nonFinitePositions,\n    planEdgeIds,\n    planNodeIds,\n    stringify,\n    type WrittenIds,\n} from \"../../common/cx-export.js\";\nimport { type PairFolding, pairFolding } from \"../../common/direction.js\";\nimport { capabilities, checkCapabilities, LOSS } from \"../../common/export.js\";\nimport { isRecord, POSITION_COLUMN } from \"../../common/json-elements.js\";\nimport { type ResolvedExportOptions, resolveExportOptions } from \"../../common/options.js\";\nimport { plural } from \"../../common/plural.js\";\nimport { type ExplicitWeights, explicitWeights } from \"../../common/weights.js\";\nimport { encodeChunks, joinText } from \"../../common/writer.js\";\nimport { type CommonExportOptions, type ExportCapabilities, type GraphExporter, type LossNote } from \"../../types.js\";\nimport { BYPASS_NAMESPACE, CX2_FORMAT, cx2Type, ORIGINAL_ID_ATTRIBUTE } from \"./importer.js\";\n\n/**\n * The options of the CX2 exporter: the common export options; it has none of its own.\n * @category Built-in formats\n */\nexport type Cx2ExportOptions = CommonExportOptions;\n\n/**\n * The loss notes the CX2 exporter's check() returns, by name. A key is the\n * code without its severity and format prefixes.\n * @category Built-in formats\n */\nexport const CX2_LOSS = Object.freeze({\n    /**\n     * Every edge is written as directed, so an undirected graph, or the undirected edges of a mixed graph, read back\n     * as directed.\n     */\n    UNDIRECTED_AS_DIRECTED: \"W_CX2_UNDIRECTED_AS_DIRECTED\",\n    /** A nested (json) column is written as a string attribute holding its JSON text. */\n    JSON_AS_STRING: \"W_CX2_JSON_AS_STRING\",\n    /** NaN and the infinities cannot be written; they are written as null and read back unset. */\n    NONFINITE_AS_NULL: \"W_CX2_NONFINITE_AS_NULL\",\n    /** A mutual pair is written as two directed edges without its mark. */\n    MUTUAL_EXPANDED: LOSS.MUTUAL_EXPANDED,\n    /**\n     * An attribute without the weight role is named like the key weights are written under; it reads back as the edge\n     * weight, or is not written when the graph has weights of its own.\n     */\n    WEIGHT_KEY_CLASH: LOSS.WEIGHT_KEY_CLASH,\n    /** A parent / parents column: CX2 has no containment. */\n    HIERARCHY_DROPPED: LOSS.HIERARCHY,\n    /** A start / end / timestamp column: CX2 has no time. */\n    TEMPORAL_DROPPED: LOSS.TEMPORAL,\n    /** An attribute with a role the format has no place for is written as a plain attribute; the role is lost. */\n    ROLE_DROPPED: LOSS.ROLE,\n    /**\n     * An attribute type CX2 stores as another (a 32-bit float as double, an unsigned integer as long, a dictionary as\n     * string); it reads back with that type.\n     */\n    DTYPE_UNSUPPORTED: LOSS.DTYPE,\n    /**\n     * Node ids the format cannot write, under `sanitizeIds: \"error\"`; the save fails with E_INVALID_ID. Pass\n     * `sanitizeIds: \"mangle\"` to rewrite them.\n     */\n    ID_CHARSET: LOSS.ID_CHARSET,\n    /** Node ids that are not integers under sanitizeIds \"mangle\": renumbered, originals kept. */\n    ID_MANGLED: LOSS.ID_MANGLED,\n    /** Edges without a usable id get generated integer ids. */\n    EDGE_IDS_GENERATED: LOSS.EDGE_IDS_GENERATED,\n});\n\n/**\n * What CX2 keeps: directed multigraphs with self-loops, integer node ids,\n * required integer edge ids, declared string / double / integer / boolean columns and lists of\n * them, declared defaults, network attributes and the position role. f32, u32, u8 and dict columns\n * are written as the nearest declared type and read back as it.\n * @category Built-in formats\n */\nexport const CX2_CAPABILITIES: ExportCapabilities = capabilities({\n    mixedDirection: false,\n    multiEdges: true,\n    selfLoops: true,\n    edgeIds: \"required\",\n    idCharset: \"integer\",\n    dtypes: [\"string\", \"f64\", \"i32\", \"bool\"],\n    components: false,\n    lists: true,\n    json: false,\n    defaults: true,\n    options: false,\n    hierarchy: false,\n    temporal: \"none\",\n    graphAttributes: true,\n    positions: true,\n    viz: false,\n});\n\n/** The roles CX2 has a slot for, and the column names its importer gives them. */\nconst SLOT_ROLES: ReadonlySet<string> = new Set([\"label\", \"position\", \"id\"]);\nconst ROLE_NAMES: Readonly<Record<string, string>> = Object.freeze({\n    label: \"name\",\n    position: POSITION_COLUMN,\n});\n\n/** Roles whose columns are never written as attributes. */\nconst SKIPPED_ROLES: ReadonlySet<string> = new Set([\n    \"directed\",\n    \"pair\",\n    \"mutual\",\n    \"weight\",\n    \"timeText\",\n    \"originalId\",\n    \"parent\",\n    \"parents\",\n    \"start\",\n    \"end\",\n    \"timestamp\",\n    \"timestamps\",\n    \"spells\",\n    \"open\",\n    \"spellsOpen\",\n    \"position\",\n    \"color\",\n    \"size\",\n    \"shape\",\n    \"thickness\",\n]);\n\n/** The aspects the exporter writes itself; an opaque aspect of the same name is not written again. */\nconst CORE_ASPECTS: ReadonlySet<string> = new Set([\n    \"nodes\",\n    \"edges\",\n    \"attributeDeclarations\",\n    \"networkAttributes\",\n    \"nodeBypasses\",\n    \"edgeBypasses\",\n    \"metaData\",\n    \"status\",\n]);\n\n/** The weight attribute name. */\nconst WEIGHT_ATTRIBUTE = \"weight\";\n\n/** One attribute column as it will be written. */\ninterface AttributePlan {\n    readonly column: Column;\n    /** The full attribute name. */\n    readonly name: string;\n    /** The key used in v (the alias, or the name). */\n    readonly key: string;\n    /** The declared type text. */\n    readonly d: string;\n    /** Whether values are written as their JSON text (a json column). */\n    readonly jsonText: boolean;\n}\n\n/** Everything export() and check() need, computed once. */\ninterface Plan {\n    readonly notes: LossNote[];\n    readonly fatal: GraphFormatError | null;\n    readonly ids: WrittenIds | null;\n    readonly folding: PairFolding;\n    readonly weights: ExplicitWeights;\n    readonly nodeAttrs: readonly AttributePlan[];\n    readonly edgeAttrs: readonly AttributePlan[];\n    readonly graphAttrs: readonly AttributePlan[];\n    readonly nodeBypasses: readonly Column[];\n    readonly edgeBypasses: readonly Column[];\n    readonly position: Column | null;\n    readonly positionZ: boolean;\n    readonly z: Column | null;\n    readonly edgeIds: readonly number[];\n    readonly originalIds: boolean;\n}\n\n/**\n * Whether a column is a bypass column of a CX2 import.\n * @param column - the column\n * @returns true for the cx2.bypass namespace\n */\nfunction isBypass(column: Column): boolean {\n    return column.meta.origin?.namespace === BYPASS_NAMESPACE;\n}\n\n/**\n * Whether a column is the z (stacking order) column.\n * @param column - the column\n * @returns true for the column marked by a Cytoscape-family importer\n */\nfunction isZ(column: Column): boolean {\n    return column.meta.extra.cytoscape === \"z\";\n}\n\n/**\n * Count the non-finite numbers of a column.\n * @param column - the column\n * @returns how many set cells (or list items) are NaN or infinite\n */\nfunction nonFiniteCount(column: Column): number {\n    const { dtype, itemDtype } = column.meta;\n    const numeric =\n        dtype === \"f32\" || dtype === \"f64\" || (dtype === \"list\" && (itemDtype === \"f32\" || itemDtype === \"f64\"));\n    if (!numeric) {\n        return 0;\n    }\n    let count = 0;\n    for (let i = 0; i < column.length; i++) {\n        if (!column.isSet(i)) {\n            continue;\n        }\n        const value = column.value(i);\n        if (dtype === \"list\") {\n            if ((value as readonly number[]).some((v) => !Number.isFinite(v))) {\n                count++;\n            }\n        } else if (!Number.isFinite(value)) {\n            count++;\n        }\n    }\n    return count;\n}\n\n/**\n * Plan the attribute columns of one table.\n * @param table - the table\n * @param skip - columns not written as attributes\n * @param rename - the written name of a column, when it differs (the label as `name`)\n * @param reserved - keys already used in v\n * @returns the plans\n */\nfunction planAttributes(\n    table: Iterable<Column>,\n    skip: (column: Column) => boolean,\n    rename: (column: Column) => string,\n    reserved: ReadonlySet<string> = new Set(),\n): AttributePlan[] {\n    const plans: AttributePlan[] = [];\n    const used = new Set<string>(reserved);\n    const candidates = [...table].filter((c) => !skip(c));\n    for (const column of candidates) {\n        used.add(rename(column));\n    }\n    for (const column of candidates) {\n        const name = rename(column);\n        const { origin } = column.meta;\n        let key = name;\n        const alias = origin?.format === CX2_FORMAT && typeof origin.id === \"string\" ? origin.id : null;\n        if (alias !== null && alias.length > 0 && alias !== name && !used.has(alias)) {\n            key = alias;\n            used.add(alias);\n        }\n        plans.push({ column, name, key, d: declaredType(column), jsonText: column.meta.dtype === \"json\" });\n    }\n    return plans;\n}\n\n/** A note-recording callback. */\ntype Note = (code: string, message: string, column?: string | null, count?: number | null) => void;\n\n/**\n * The generic notes of checkCapabilities(), adapted to CX2: bypass columns hold any JSON value,\n * ids are counted by planNodeIds(), nested values are written as JSON text, and only the node\n * label is written into the \"n\" slot (an edge label keeps its own name but loses its role).\n * @param snapshot - the snapshot\n * @param common - the resolved common options\n * @param notes - the notes so far, appended to\n * @param note - the recorder\n * @returns the fatal condition, or null\n */\nfunction capabilityNotes(\n    snapshot: GraphSnapshot,\n    common: ResolvedExportOptions,\n    notes: LossNote[],\n    note: Note,\n): GraphFormatError | null {\n    let fatal: GraphFormatError | null = null;\n    // bypass columns are written as bypasses, which hold any JSON value\n    const bypassNames = new Set(\n        [...snapshot.nodes, ...snapshot.edges].filter((c) => isBypass(c) || isZ(c)).map((c) => c.meta.name),\n    );\n    for (const gen of checkCapabilities(snapshot, CX2_CAPABILITIES, common, {\n        roles: SLOT_ROLES,\n        roleNames: ROLE_NAMES,\n    })) {\n        if (!keepGenericNote(gen, bypassNames)) {\n            continue;\n        }\n        if (gen.code === LOSS.JSON) {\n            note(\n                CX2_LOSS.JSON_AS_STRING,\n                `${gen.column === null ? \"a column\" : `column \"${gen.column}\"`} holds nested values; written as a string attribute holding their JSON text`,\n                gen.column,\n                gen.count,\n            );\n            continue;\n        }\n        if (gen.code === LOSS.MIXED_DIRECTION_ERROR && fatal === null) {\n            fatal = new GraphFormatError(\"E_DIRECTED\", gen.message, { reason: \"mixed direction\" });\n        }\n        notes.push(gen);\n    }\n    const edgeLabel = snapshot.edges.byRole(\"label\");\n    if (edgeLabel !== null) {\n        note(\n            LOSS.ROLE,\n            `edge column \"${edgeLabel.meta.name}\" (label) is written as a plain attribute; CX2 edges have no label slot and the role is lost`,\n            edgeLabel.meta.name,\n            edgeLabel.length - edgeLabel.nullCount,\n        );\n    }\n    return fatal;\n}\n\n/**\n * Whether a generic note applies to CX2 as it stands.\n * @param gen - the generic note\n * @param bypassNames - the names of the columns written as bypasses\n * @returns false for a note CX2 drops or replaces\n */\nfunction keepGenericNote(gen: LossNote, bypassNames: ReadonlySet<string>): boolean {\n    if (gen.column !== null && bypassNames.has(gen.column) && (gen.code === LOSS.JSON || gen.code === LOSS.DTYPE)) {\n        return false;\n    }\n    if (gen.code === LOSS.COLUMN_NAME_CHANGED && gen.message.startsWith(\"edge column\")) {\n        // only the node label is written into the \"n\" slot; an edge label keeps its own name\n        return false;\n    }\n    // ids are counted by planNodeIds(): CX2 also keeps integer ids beyond 2^53, which the generic rule refuses\n    return gen.code !== LOSS.ID_CHARSET && gen.code !== LOSS.ID_MANGLED;\n}\n\n/**\n * Note the NaN and infinite values written as null: attribute cells, explicit weights, positions.\n * @param snapshot - the snapshot\n * @param attrs - every planned attribute\n * @param weights - the explicit weights\n * @param position - the position column, or null\n * @param note - the recorder\n */\nfunction nonFiniteNote(\n    snapshot: GraphSnapshot,\n    attrs: readonly AttributePlan[],\n    weights: ExplicitWeights,\n    position: Column | null,\n    note: Note,\n): void {\n    let nonfinite = 0;\n    for (const p of attrs) {\n        nonfinite += nonFiniteCount(p.column);\n    }\n    for (let e = 0; e < snapshot.edgeCount; e++) {\n        if (weights.isExplicit(e) && !Number.isFinite(weights.value(e))) {\n            nonfinite++;\n        }\n    }\n    if (position !== null) {\n        nonfinite += nonFinitePositions(position);\n    }\n    if (nonfinite > 0) {\n        note(\n            CX2_LOSS.NONFINITE_AS_NULL,\n            `${nonfinite} NaN or infinite value${plural(nonfinite)} cannot be written in CX2; written as null, they read back unset`,\n            null,\n            nonfinite,\n        );\n    }\n}\n\n/**\n * Plan the edge attributes, noting a plain `weight` column that clashes with the weight key.\n * @param snapshot - the snapshot\n * @param weights - the explicit weights\n * @param note - the recorder\n * @returns the edge attribute plans\n */\nfunction planEdgeAttributes(snapshot: GraphSnapshot, weights: ExplicitWeights, note: Note): AttributePlan[] {\n    const plainWeight = snapshot.edges.get(WEIGHT_ATTRIBUTE);\n    if (plainWeight !== null && plainWeight.meta.role === null) {\n        note(\n            LOSS.WEIGHT_KEY_CLASH,\n            weights.weighted\n                ? `edge column \"${WEIGHT_ATTRIBUTE}\" is not written: the explicit weights are written under that name`\n                : `edge column \"${WEIGHT_ATTRIBUTE}\" reads back as the edge weight`,\n            WEIGHT_ATTRIBUTE,\n            null,\n        );\n    }\n    return planAttributes(\n        snapshot.edges,\n        (c) =>\n            (c.meta.role !== null && (SKIPPED_ROLES.has(c.meta.role) || c.meta.role === \"id\")) ||\n            isBypass(c) ||\n            (weights.weighted && c === plainWeight),\n        (c) => c.meta.name,\n        weights.weighted ? new Set([WEIGHT_ATTRIBUTE]) : new Set(),\n    );\n}\n\n/**\n * Plan an export: the notes, the fatal condition and what is written.\n * @param snapshot - the snapshot\n * @param common - the resolved common options\n * @returns the plan\n */\nfunction plan(snapshot: GraphSnapshot, common: ResolvedExportOptions): Plan {\n    const notes: LossNote[] = [];\n    const note: Note = (code, message, column = null, count = null) => {\n        notes.push(Object.freeze({ code, message, column, count }));\n    };\n    let fatal = capabilityNotes(snapshot, common, notes, note);\n\n    const folding = pairFolding(snapshot);\n    directionNotes(snapshot, folding, common, CX2_LOSS.UNDIRECTED_AS_DIRECTED, note);\n\n    const planned = planNodeIds(snapshot, common, \"CX2\", ORIGINAL_ID_ATTRIBUTE, note);\n    const ids = planned instanceof GraphFormatError ? null : planned;\n    if (planned instanceof GraphFormatError) {\n        fatal ??= planned;\n    }\n\n    const weights = explicitWeights(snapshot);\n    const label = snapshot.nodes.byRole(\"label\");\n    const nodeAttrs = planAttributes(\n        snapshot.nodes,\n        (c) => (c.meta.role !== null && SKIPPED_ROLES.has(c.meta.role)) || isBypass(c) || isZ(c),\n        (c) => (c === label && !snapshot.nodes.has(\"name\") ? \"name\" : c.meta.name),\n        ids !== null && ids.changed > 0 ? new Set([ORIGINAL_ID_ATTRIBUTE]) : new Set(),\n    );\n    const edgeAttrs = planEdgeAttributes(snapshot, weights, note);\n    const graphAttrs = planAttributes(\n        snapshot.graph,\n        () => false,\n        (c) => c.meta.name,\n    ).map((p) => ({ ...p, key: p.name }));\n\n    const position = snapshot.nodes.byRole(\"position\");\n    nonFiniteNote(snapshot, [...nodeAttrs, ...edgeAttrs, ...graphAttrs], weights, position, note);\n\n    const edgeIds = planEdgeIds(snapshot, note);\n    const z = [...snapshot.nodes].find(isZ) ?? null;\n    const positionZ = position !== null && z === null && position.meta.extra.sourceDims === 3;\n    return {\n        notes,\n        fatal,\n        ids,\n        folding,\n        weights,\n        nodeAttrs,\n        edgeAttrs,\n        graphAttrs,\n        nodeBypasses: [...snapshot.nodes].filter(isBypass),\n        edgeBypasses: [...snapshot.edges].filter(isBypass),\n        position,\n        positionZ,\n        z,\n        edgeIds,\n        originalIds: ids !== null && ids.changed > 0,\n    };\n}\n\n// ============================================================ writing\n\n/**\n * The value written for one cell.\n * @param p - the attribute plan\n * @param row - the row\n * @returns the value, or undefined for an unset cell\n */\nfunction cellValue(p: AttributePlan, row: number): unknown {\n    const { column } = p;\n    if (!column.isSet(row)) {\n        return undefined;\n    }\n    const value = column.value(row);\n    if (p.jsonText) {\n        return JSON.stringify(value);\n    }\n    if (column.meta.dtype === \"list\" || column.meta.components > 1) {\n        const items = Array.from(value as ArrayLike<unknown>);\n        if (p.d === \"string\") {\n            return JSON.stringify(items);\n        }\n        return items.some((v) => typeof v === \"number\" && !Number.isFinite(v)) ? null : items;\n    }\n    if (typeof value === \"number\" && !Number.isFinite(value)) {\n        return null;\n    }\n    return value;\n}\n\n/**\n * The declarations of one table.\n * @param plans - the attribute plans\n * @param defaults - whether defaults and aliases may be written (not for network attributes)\n * @returns the declaration object\n */\nfunction declarations(plans: readonly AttributePlan[], defaults: boolean): Record<string, unknown> {\n    const out: Record<string, unknown> = {};\n    for (const p of plans) {\n        const decl: Record<string, unknown> = { d: p.d };\n        if (defaults && p.key !== p.name) {\n            decl.a = p.key;\n        }\n        const fallback = p.column.meta.default;\n        if (defaults && fallback !== undefined && fallback !== null) {\n            if (defaultFits(cx2Type(p.d), fallback)) {\n                decl.v = fallback;\n            }\n        }\n        out[p.name] = decl;\n    }\n    return out;\n}\n\n/**\n * Whether a declared default can be written as the value of a declared type.\n * @param type - the type\n * @param fallback - the default\n * @returns true when it matches\n */\nfunction defaultFits(type: ReturnType<typeof cx2Type>, fallback: unknown): boolean {\n    if (type === null) {\n        return false;\n    }\n    if (type.list) {\n        return Array.isArray(fallback);\n    }\n    switch (type.scalar) {\n        case \"string\":\n            return typeof fallback === \"string\";\n        case \"boolean\":\n            return typeof fallback === \"boolean\";\n        default:\n            return typeof fallback === \"number\" && Number.isFinite(fallback);\n    }\n}\n\n/**\n * The v object of one element.\n * @param plans - the attribute plans\n * @param row - the row\n * @returns the object, or null when empty\n */\nfunction attributesOf(plans: readonly AttributePlan[], row: number): Record<string, unknown> | null {\n    let out: Record<string, unknown> | null = null;\n    for (const p of plans) {\n        const value = cellValue(p, row);\n        if (value !== undefined) {\n            out ??= {};\n            out[p.key] = value;\n        }\n    }\n    return out;\n}\n\n/**\n * Write the document as text parts.\n * @param snapshot - the snapshot\n * @param p - the plan\n * @yields the document's text\n * @returns nothing\n */\nfunction* write(snapshot: GraphSnapshot, p: Plan): Generator<string, void, undefined> {\n    if (p.fatal !== null) {\n        throw p.fatal;\n    }\n    const { ids } = p;\n    if (ids === null) {\n        throw new GraphFormatError(\"E_INVALID_ID\", \"node ids cannot be written as CX2 integers\", { reason: \"charset\" });\n    }\n    const { src, dst } = snapshot.edgeList();\n    const edges: number[] = [];\n    for (let e = 0; e < snapshot.edgeCount; e++) {\n        if (!p.folding.folded(e)) {\n            edges.push(e);\n        }\n    }\n\n    const nodeDecls = declarations(p.nodeAttrs, true);\n    if (p.originalIds) {\n        nodeDecls[ORIGINAL_ID_ATTRIBUTE] = { d: \"string\" };\n    }\n    const edgeDecls = declarations(p.edgeAttrs, true);\n    if (p.weights.weighted) {\n        edgeDecls[WEIGHT_ATTRIBUTE] = { d: \"double\" };\n    }\n    const networkDecls = declarations(p.graphAttrs, false);\n    const network: Record<string, unknown> = {};\n    for (const a of p.graphAttrs) {\n        const value = cellValue(a, 0);\n        if (value !== undefined) {\n            network[a.name] = value;\n        }\n    }\n    const { meta } = snapshot;\n    for (const [key, value] of [\n        [\"name\", meta.name],\n        [\"description\", meta.description],\n    ] as const) {\n        if (value !== null && !(key in network) && !(key in networkDecls)) {\n            network[key] = value;\n            networkDecls[key] = { d: \"string\" };\n        }\n    }\n    const kept = isRecord(meta.extra.cx2) ? meta.extra.cx2 : {};\n    const otherDecls = isRecord(kept.declarations) ? kept.declarations : {};\n    const opaque = meta.sourceFormat === CX2_FORMAT && isRecord(kept.opaque) ? kept.opaque : {};\n    const declarationsElement: Record<string, unknown> = { ...otherDecls };\n    for (const [key, table] of [\n        [\"networkAttributes\", networkDecls],\n        [\"nodes\", nodeDecls],\n        [\"edges\", edgeDecls],\n    ] as const) {\n        if (Object.keys(table).length > 0) {\n            declarationsElement[key] = table;\n        }\n    }\n    const nodeBypassRows = bypassRows(p.nodeBypasses, snapshot.nodeCount);\n    const edgeBypassRows = bypassRows(p.edgeBypasses, snapshot.edgeCount).filter((e) => !p.folding.folded(e));\n    const opaqueAspects = Object.entries(opaque).filter(\n        (entry): entry is [string, unknown[]] => !CORE_ASPECTS.has(entry[0]) && Array.isArray(entry[1]),\n    );\n\n    const counts: [string, number][] = [];\n    const hasDeclarations = Object.keys(declarationsElement).length > 0;\n    if (hasDeclarations) {\n        counts.push([\"attributeDeclarations\", 1]);\n    }\n    if (Object.keys(network).length > 0) {\n        counts.push([\"networkAttributes\", 1]);\n    }\n    counts.push([\"nodes\", snapshot.nodeCount], [\"edges\", edges.length]);\n    if (nodeBypassRows.length > 0) {\n        counts.push([\"nodeBypasses\", nodeBypassRows.length]);\n    }\n    if (edgeBypassRows.length > 0) {\n        counts.push([\"edgeBypasses\", edgeBypassRows.length]);\n    }\n    for (const [name, elements] of opaqueAspects) {\n        counts.push([name, elements.length]);\n    }\n\n    yield '[{\"CXVersion\":\"2.0\",\"hasFragments\":false},\\n';\n    yield `{\"metaData\":${stringify(counts.map(([name, elementCount]) => ({ name, elementCount })))}},\\n`;\n    if (hasDeclarations) {\n        yield `{\"attributeDeclarations\":[${stringify(declarationsElement)}]},\\n`;\n    }\n    if (Object.keys(network).length > 0) {\n        yield `{\"networkAttributes\":[${stringify(network)}]},\\n`;\n    }\n    yield* block(\"nodes\", snapshot.nodeCount, (i) => stringify(nodeElement(p, ids, i)));\n    yield* block(\"edges\", edges.length, (k) => {\n        const e = edges[k];\n        const element: Record<string, unknown> = {\n            id: p.edgeIds[e],\n            s: ids.idAt(src[e]),\n            t: ids.idAt(dst[e]),\n        };\n        let v = attributesOf(p.edgeAttrs, e);\n        if (p.weights.isExplicit(e)) {\n            const w = p.weights.value(e);\n            v ??= {};\n            v[WEIGHT_ATTRIBUTE] = Number.isFinite(w) ? w : null;\n        }\n        if (v !== null) {\n            element.v = v;\n        }\n        return stringify(element);\n    });\n    if (nodeBypassRows.length > 0) {\n        yield* block(\"nodeBypasses\", nodeBypassRows.length, (k) => {\n            const i = nodeBypassRows[k];\n            return stringify({ id: ids.idAt(i), v: bypassValues(p.nodeBypasses, i) });\n        });\n    }\n    if (edgeBypassRows.length > 0) {\n        yield* block(\"edgeBypasses\", edgeBypassRows.length, (k) => {\n         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origin.id\n            const property = column.meta.origin?.id;\n            out[typeof property === \"string\" && property.length > 0 ? property : column.meta.name] = column.value(row);\n        }\n    }\n    return out;\n}\n\n/**\n * The CX2 exporter plugin.\n * @category Built-in formats\n */\nexport const cx2Exporter: GraphExporter<Cx2ExportOptions> = Object.freeze({\n    format: CX2_FORMAT,\n    options: Object.freeze([]),\n    capabilities: CX2_CAPABILITIES,\n\n    /**\n     * Pre-flight: what export() would lose, without writing anything.\n     * @param snapshot - the snapshot\n     * @param options - the common options\n     * @returns the notes, empty when the export is exact\n     */\n    check(snapshot: GraphSnapshot, options?: Cx2ExportOptions): readonly LossNote[] {\n        return Object.freeze([...plan(snapshot, resolveExportOptions(options)).notes]);\n    },\n\n    /**\n     * Write the document as UTF-8 chunks.\n     * @param snapshot - the snapshot\n     * @param 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+{"version":3,"file":"exporter-Cy_1da4c.js","sources":["../../src/formats/cx2/exporter.ts"],"sourcesContent":["/**\n * The CX2 exporter (design/graph-io/cytoscape-and-obo/design.md section 1.3; graphty issue #307):\n * writes a snapshot as one CX2 document -- the descriptor, the pre-metadata, one\n * `attributeDeclarations` block (aliases from `origin.id`, defaults from `meta.default`),\n * `networkAttributes`, `nodes` (x / y from the position with y flipped back to screen coordinates,\n * `z` from the `z` column), `edges`, the `cx2.bypass` columns as `nodeBypasses` / `edgeBypasses`,\n * the opaque aspects a CX2 import kept (which returns its own style rules) and `status`.\n *\n * What CX2 cannot hold is announced by check() before anything is written: every edge is\n * directed (W_CX2_UNDIRECTED_AS_DIRECTED, W_MUTUAL_EXPANDED), node ids are integers (E_ID_CHARSET\n * unless `sanitizeIds: \"mangle\"`, which keeps the original in the `graphty:originalId` attribute\n * the importer restores), nested values are written as JSON text (W_CX2_JSON_AS_STRING), NaN and\n * the infinities as null (W_CX2_NONFINITE_AS_NULL), and the generic notes of checkCapabilities().\n */\n\nimport { type Column, GraphFormatError, type GraphSnapshot } from \"@graphty/graph-format\";\n\nimport {\n    aspectBlock,\n    declaredType,\n    directionNotes,\n    nonFinitePositions,\n    planEdgeIds,\n    planNodeIds,\n    stringify,\n    type WrittenIds,\n} from \"../../common/cx-export.js\";\nimport { type PairFolding, pairFolding } from \"../../common/direction.js\";\nimport { capabilities, checkCapabilities, LOSS } from \"../../common/export.js\";\nimport { isRecord, POSITION_COLUMN } from \"../../common/json-elements.js\";\nimport { type ResolvedExportOptions, resolveExportOptions } from \"../../common/options.js\";\nimport { plural } from \"../../common/plural.js\";\nimport { type ExplicitWeights, explicitWeights } from \"../../common/weights.js\";\nimport { encodeChunks, joinText } from \"../../common/writer.js\";\nimport { type CommonExportOptions, type ExportCapabilities, type GraphExporter, type LossNote } from \"../../types.js\";\nimport { BYPASS_NAMESPACE, CX2_FORMAT, cx2Type, ORIGINAL_ID_ATTRIBUTE } from \"./importer.js\";\n\n/**\n * The options of the CX2 exporter: the common export options; it has none of its own.\n * @category Built-in formats\n */\nexport type Cx2ExportOptions = CommonExportOptions;\n\n/**\n * The loss notes the CX2 exporter's check() returns, by name. 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The aspects the exporter writes itself; an opaque aspect of the same name is not written again. */\nconst CORE_ASPECTS: ReadonlySet<string> = new Set([\n    \"nodes\",\n    \"edges\",\n    \"attributeDeclarations\",\n    \"networkAttributes\",\n    \"nodeBypasses\",\n    \"edgeBypasses\",\n    \"metaData\",\n    \"status\",\n]);\n\n/** The weight attribute name. */\nconst WEIGHT_ATTRIBUTE = \"weight\";\n\n/** One attribute column as it will be written. */\ninterface AttributePlan {\n    readonly column: Column;\n    /** The full attribute name. */\n    readonly name: string;\n    /** The key used in v (the alias, or the name). */\n    readonly key: string;\n    /** The declared type text. */\n    readonly d: string;\n    /** Whether values are written as their JSON text (a json column). */\n    readonly jsonText: boolean;\n}\n\n/** Everything export() and check() need, computed once. */\ninterface Plan {\n    readonly notes: LossNote[];\n    readonly fatal: GraphFormatError | null;\n    readonly ids: WrittenIds | null;\n    readonly folding: PairFolding;\n    readonly weights: ExplicitWeights;\n    readonly nodeAttrs: readonly AttributePlan[];\n    readonly edgeAttrs: readonly AttributePlan[];\n    readonly graphAttrs: readonly AttributePlan[];\n    readonly nodeBypasses: readonly Column[];\n    readonly edgeBypasses: readonly Column[];\n    readonly position: Column | null;\n    readonly positionZ: boolean;\n    readonly z: Column | null;\n    readonly edgeIds: readonly number[];\n    readonly originalIds: boolean;\n}\n\n/**\n * Whether a column is a bypass column of a CX2 import.\n * @param column - the column\n * @returns true for the cx2.bypass namespace\n */\nfunction isBypass(column: Column): boolean {\n    return column.meta.origin?.namespace === BYPASS_NAMESPACE;\n}\n\n/**\n * Whether a column is the z (stacking order) column.\n * @param column - the column\n * @returns true for the column marked by a Cytoscape-family importer\n */\nfunction isZ(column: Column): boolean {\n    return column.meta.extra.cytoscape === \"z\";\n}\n\n/**\n * Count the non-finite numbers of a column.\n * @param column - the column\n * @returns how many set cells (or list items) are NaN or infinite\n */\nfunction nonFiniteCount(column: Column): number {\n    const { dtype, itemDtype } = column.meta;\n    const numeric =\n        dtype === \"f32\" || dtype === \"f64\" || (dtype === \"list\" && (itemDtype === \"f32\" || itemDtype === \"f64\"));\n    if (!numeric) {\n        return 0;\n    }\n    let count = 0;\n    for (let i = 0; i < column.length; i++) {\n        if (!column.isSet(i)) {\n            continue;\n        }\n        const value = column.value(i);\n        if (dtype === \"list\") {\n            if ((value as readonly number[]).some((v) => !Number.isFinite(v))) {\n                count++;\n            }\n        } else if (!Number.isFinite(value)) {\n            count++;\n        }\n    }\n    return count;\n}\n\n/**\n * Plan the attribute columns of one table.\n * @param table - the table\n * @param skip - columns not written as attributes\n * @param rename - the written name of a column, when it differs (the label as `name`)\n * @param reserved - keys already used in v\n * @returns the plans\n */\nfunction planAttributes(\n    table: Iterable<Column>,\n    skip: (column: Column) => boolean,\n    rename: (column: Column) => string,\n    reserved: ReadonlySet<string> = new Set(),\n): AttributePlan[] {\n    const plans: AttributePlan[] = [];\n    const used = new Set<string>(reserved);\n    const candidates = [...table].filter((c) => !skip(c));\n    for (const column of candidates) {\n        used.add(rename(column));\n    }\n    for (const column of candidates) {\n        const name = rename(column);\n        const { origin } = column.meta;\n        let key = name;\n        const alias = origin?.format === CX2_FORMAT && typeof origin.id === \"string\" ? origin.id : null;\n        if (alias !== null && alias.length > 0 && alias !== name && !used.has(alias)) {\n            key = alias;\n            used.add(alias);\n        }\n        plans.push({ column, name, key, d: declaredType(column), jsonText: column.meta.dtype === \"json\" });\n    }\n    return plans;\n}\n\n/** A note-recording callback. */\ntype Note = (code: string, message: string, column?: string | null, count?: number | null) => void;\n\n/**\n * The generic notes of checkCapabilities(), adapted to CX2: bypass columns hold any JSON value,\n * ids are counted by planNodeIds(), nested values are written as JSON text, and only the node\n * label is written into the \"n\" slot (an edge label keeps its own name but loses its role).\n * @param snapshot - the snapshot\n * @param common - the resolved common options\n * @param notes - the notes so far, appended to\n * @param note - the recorder\n * @returns the fatal condition, or null\n */\nfunction capabilityNotes(\n    snapshot: GraphSnapshot,\n    common: ResolvedExportOptions,\n    notes: LossNote[],\n    note: Note,\n): GraphFormatError | null {\n    let fatal: GraphFormatError | null = null;\n    // bypass columns are written as bypasses, which hold any JSON value\n    const bypassNames = new Set(\n        [...snapshot.nodes, ...snapshot.edges].filter((c) => isBypass(c) || isZ(c)).map((c) => c.meta.name),\n    );\n    for (const gen of checkCapabilities(snapshot, CX2_CAPABILITIES, common, {\n        roles: SLOT_ROLES,\n        roleNames: ROLE_NAMES,\n    })) {\n        if (!keepGenericNote(gen, bypassNames)) {\n            continue;\n        }\n        if (gen.code === LOSS.JSON) {\n            note(\n                CX2_LOSS.JSON_AS_STRING,\n                `${gen.column === null ? \"a column\" : `column \"${gen.column}\"`} holds nested values; written as a string attribute holding their JSON text`,\n                gen.column,\n                gen.count,\n            );\n            continue;\n        }\n        if (gen.code === LOSS.MIXED_DIRECTION_ERROR && fatal === null) {\n            fatal = new GraphFormatError(\"E_DIRECTED\", gen.message, { reason: \"mixed direction\" });\n        }\n        notes.push(gen);\n    }\n    const edgeLabel = snapshot.edges.byRole(\"label\");\n    if (edgeLabel !== null) {\n        note(\n            LOSS.ROLE,\n            `edge column \"${edgeLabel.meta.name}\" (label) is written as a plain attribute; CX2 edges have no label slot and the role is lost`,\n            edgeLabel.meta.name,\n            edgeLabel.length - edgeLabel.nullCount,\n        );\n    }\n    return fatal;\n}\n\n/**\n * Whether a generic note applies to CX2 as it stands.\n * @param gen - the generic note\n * @param bypassNames - the names of the columns written as bypasses\n * @returns false for a note CX2 drops or replaces\n */\nfunction keepGenericNote(gen: LossNote, bypassNames: ReadonlySet<string>): boolean {\n    if (gen.column !== null && bypassNames.has(gen.column) && (gen.code === LOSS.JSON || gen.code === LOSS.DTYPE)) {\n        return false;\n    }\n    if (gen.code === LOSS.COLUMN_NAME_CHANGED && gen.message.startsWith(\"edge column\")) {\n        // only the node label is written into the \"n\" slot; an edge label keeps its own name\n        return false;\n    }\n    // ids are counted by planNodeIds(): CX2 also keeps integer ids beyond 2^53, which the generic rule refuses\n    return gen.code !== LOSS.ID_CHARSET && gen.code !== LOSS.ID_MANGLED;\n}\n\n/**\n * Note the NaN and infinite values written as null: attribute cells, explicit weights, positions.\n * @param snapshot - the snapshot\n * @param attrs - every planned attribute\n * @param weights - the explicit weights\n * @param position - the position column, or null\n * @param note - the recorder\n */\nfunction nonFiniteNote(\n    snapshot: GraphSnapshot,\n    attrs: readonly AttributePlan[],\n    weights: ExplicitWeights,\n    position: Column | null,\n    note: Note,\n): void {\n    let nonfinite = 0;\n    for (const p of attrs) {\n        nonfinite += nonFiniteCount(p.column);\n    }\n    for (let e = 0; e < snapshot.edgeCount; e++) {\n        if (weights.isExplicit(e) && !Number.isFinite(weights.value(e))) {\n            nonfinite++;\n        }\n    }\n    if (position !== null) {\n        nonfinite += nonFinitePositions(position);\n    }\n    if (nonfinite > 0) {\n        note(\n            CX2_LOSS.NONFINITE_AS_NULL,\n            `${nonfinite} NaN or infinite value${plural(nonfinite)} cannot be written in CX2; written as null, they read back unset`,\n            null,\n            nonfinite,\n        );\n    }\n}\n\n/**\n * Plan the edge attributes, noting a plain `weight` column that clashes with the weight key.\n * @param snapshot - the snapshot\n * @param weights - the explicit weights\n * @param note - the recorder\n * @returns the edge attribute plans\n */\nfunction planEdgeAttributes(snapshot: GraphSnapshot, weights: ExplicitWeights, note: Note): AttributePlan[] {\n    const plainWeight = snapshot.edges.get(WEIGHT_ATTRIBUTE);\n    if (plainWeight !== null && plainWeight.meta.role === null) {\n        note(\n            LOSS.WEIGHT_KEY_CLASH,\n            weights.weighted\n                ? `edge column \"${WEIGHT_ATTRIBUTE}\" is not written: the explicit weights are written under that name`\n                : `edge column \"${WEIGHT_ATTRIBUTE}\" reads back as the edge weight`,\n            WEIGHT_ATTRIBUTE,\n            null,\n        );\n    }\n    return planAttributes(\n        snapshot.edges,\n        (c) =>\n            (c.meta.role !== null && (SKIPPED_ROLES.has(c.meta.role) || c.meta.role === \"id\")) ||\n            isBypass(c) ||\n            (weights.weighted && c === plainWeight),\n        (c) => c.meta.name,\n        weights.weighted ? new Set([WEIGHT_ATTRIBUTE]) : new Set(),\n    );\n}\n\n/**\n * Plan an export: the notes, the fatal condition and what is written.\n * @param snapshot - the snapshot\n * @param common - the resolved common options\n * @returns the plan\n */\nfunction plan(snapshot: GraphSnapshot, common: ResolvedExportOptions): Plan {\n    const notes: LossNote[] = [];\n    const note: Note = (code, message, column = null, count = null) => {\n        notes.push(Object.freeze({ code, message, column, count }));\n    };\n    let fatal = capabilityNotes(snapshot, common, notes, note);\n\n    const folding = pairFolding(snapshot);\n    directionNotes(snapshot, folding, common, CX2_LOSS.UNDIRECTED_AS_DIRECTED, note);\n\n    const planned = planNodeIds(snapshot, common, \"CX2\", ORIGINAL_ID_ATTRIBUTE, note);\n    const ids = planned instanceof GraphFormatError ? null : planned;\n    if (planned instanceof GraphFormatError) {\n        fatal ??= planned;\n    }\n\n    const weights = explicitWeights(snapshot);\n    const label = snapshot.nodes.byRole(\"label\");\n    const nodeAttrs = planAttributes(\n        snapshot.nodes,\n        (c) => (c.meta.role !== null && SKIPPED_ROLES.has(c.meta.role)) || isBypass(c) || isZ(c),\n        (c) => (c === label && !snapshot.nodes.has(\"name\") ? \"name\" : c.meta.name),\n        ids !== null && ids.changed > 0 ? new Set([ORIGINAL_ID_ATTRIBUTE]) : new Set(),\n    );\n    const edgeAttrs = planEdgeAttributes(snapshot, weights, note);\n    const graphAttrs = planAttributes(\n        snapshot.graph,\n        () => false,\n        (c) => c.meta.name,\n    ).map((p) => ({ ...p, key: p.name }));\n\n    const position = snapshot.nodes.byRole(\"position\");\n    nonFiniteNote(snapshot, [...nodeAttrs, ...edgeAttrs, ...graphAttrs], weights, position, note);\n\n    const edgeIds = planEdgeIds(snapshot, note);\n    const z = [...snapshot.nodes].find(isZ) ?? null;\n    const positionZ = position !== null && z === null && position.meta.extra.sourceDims === 3;\n    return {\n        notes,\n        fatal,\n        ids,\n        folding,\n        weights,\n        nodeAttrs,\n        edgeAttrs,\n        graphAttrs,\n        nodeBypasses: [...snapshot.nodes].filter(isBypass),\n        edgeBypasses: [...snapshot.edges].filter(isBypass),\n        position,\n        positionZ,\n        z,\n        edgeIds,\n        originalIds: ids !== null && ids.changed > 0,\n    };\n}\n\n// ============================================================ writing\n\n/**\n * The value written for one cell.\n * @param p - the attribute plan\n * @param row - the row\n * @returns the value, or undefined for an unset cell\n */\nfunction cellValue(p: AttributePlan, row: number): unknown {\n    const { column } = p;\n    if (!column.isSet(row)) {\n        return undefined;\n    }\n    const value = column.value(row);\n    if (p.jsonText) {\n        return JSON.stringify(value);\n    }\n    if (column.meta.dtype === \"list\" || column.meta.components > 1) {\n        const items = Array.from(value as ArrayLike<unknown>);\n        if (p.d === \"string\") {\n            return JSON.stringify(items);\n        }\n        return items.some((v) => typeof v === \"number\" && !Number.isFinite(v)) ? null : items;\n    }\n    if (typeof value === \"number\" && !Number.isFinite(value)) {\n        return null;\n    }\n    return value;\n}\n\n/**\n * The declarations of one table.\n * @param plans - the attribute plans\n * @param defaults - whether defaults and aliases may be written (not for network attributes)\n * @returns the declaration object\n */\nfunction declarations(plans: readonly AttributePlan[], defaults: boolean): Record<string, unknown> {\n    const out: Record<string, unknown> = {};\n    for (const p of plans) {\n        const decl: Record<string, unknown> = { d: p.d };\n        if (defaults && p.key !== p.name) {\n            decl.a = p.key;\n        }\n        const fallback = p.column.meta.default;\n        if (defaults && fallback !== undefined && fallback !== null) {\n            if (defaultFits(cx2Type(p.d), fallback)) {\n                decl.v = fallback;\n            }\n        }\n        out[p.name] = decl;\n    }\n    return out;\n}\n\n/**\n * Whether a declared default can be written as the value of a declared type.\n * @param type - the type\n * @param fallback - the default\n * @returns true when it matches\n */\nfunction defaultFits(type: ReturnType<typeof cx2Type>, fallback: unknown): boolean {\n    if (type === null) {\n        return false;\n    }\n    if (type.list) {\n        return Array.isArray(fallback);\n    }\n    switch (type.scalar) {\n        case \"string\":\n            return typeof fallback === \"string\";\n        case \"boolean\":\n            return typeof fallback === \"boolean\";\n        default:\n            return typeof fallback === \"number\" && Number.isFinite(fallback);\n    }\n}\n\n/**\n * The v object of one element.\n * @param plans - the attribute plans\n * @param row - the row\n * @returns the object, or null when empty\n */\nfunction attributesOf(plans: readonly AttributePlan[], row: number): Record<string, unknown> | null {\n    let out: Record<string, unknown> | null = null;\n    for (const p of plans) {\n        const value = cellValue(p, row);\n        if (value !== undefined) {\n            out ??= {};\n            out[p.key] = value;\n        }\n    }\n    return out;\n}\n\n/**\n * Write the document as text parts.\n * @param snapshot - the snapshot\n * @param p - the plan\n * @yields the document's text\n * @returns nothing\n */\nfunction* write(snapshot: GraphSnapshot, p: Plan): Generator<string, void, undefined> {\n    if (p.fatal !== null) {\n        throw p.fatal;\n    }\n    const { ids } = p;\n    if (ids === null) {\n        throw new GraphFormatError(\"E_INVALID_ID\", \"node ids cannot be written as CX2 integers\", { reason: \"charset\" });\n    }\n    const { src, dst } = snapshot.edgeList();\n    const edges: number[] = [];\n    for (let e = 0; e < snapshot.edgeCount; e++) {\n        if (!p.folding.folded(e)) {\n            edges.push(e);\n        }\n    }\n\n    const nodeDecls = declarations(p.nodeAttrs, true);\n    if (p.originalIds) {\n        nodeDecls[ORIGINAL_ID_ATTRIBUTE] = { d: \"string\" };\n    }\n    const edgeDecls = declarations(p.edgeAttrs, true);\n    if (p.weights.weighted) {\n        edgeDecls[WEIGHT_ATTRIBUTE] = { d: \"double\" };\n    }\n    const networkDecls = declarations(p.graphAttrs, false);\n    const network: Record<string, unknown> = {};\n    for (const a of p.graphAttrs) {\n        const value = cellValue(a, 0);\n        if (value !== undefined) {\n            network[a.name] = value;\n        }\n    }\n    const { meta } = snapshot;\n    for (const [key, value] of [\n        [\"name\", meta.name],\n        [\"description\", meta.description],\n    ] as const) {\n        if (value !== null && !(key in network) && !(key in networkDecls)) {\n            network[key] = value;\n            networkDecls[key] = { d: \"string\" };\n        }\n    }\n    const kept = isRecord(meta.extra.cx2) ? meta.extra.cx2 : {};\n    const otherDecls = isRecord(kept.declarations) ? kept.declarations : {};\n    const opaque = meta.sourceFormat === CX2_FORMAT && isRecord(kept.opaque) ? kept.opaque : {};\n    const declarationsElement: Record<string, unknown> = { ...otherDecls };\n    for (const [key, table] of [\n        [\"networkAttributes\", networkDecls],\n        [\"nodes\", nodeDecls],\n        [\"edges\", edgeDecls],\n    ] as const) {\n        if (Object.keys(table).length > 0) {\n            declarationsElement[key] = table;\n        }\n    }\n    const nodeBypassRows = bypassRows(p.nodeBypasses, snapshot.nodeCount);\n    const edgeBypassRows = bypassRows(p.edgeBypasses, snapshot.edgeCount).filter((e) => !p.folding.folded(e));\n    const opaqueAspects = Object.entries(opaque).filter(\n        (entry): entry is [string, unknown[]] => !CORE_ASPECTS.has(entry[0]) && Array.isArray(entry[1]),\n    );\n\n    const counts: [string, number][] = [];\n    const hasDeclarations = Object.keys(declarationsElement).length > 0;\n    if (hasDeclarations) {\n        counts.push([\"attributeDeclarations\", 1]);\n    }\n    if (Object.keys(network).length > 0) {\n        counts.push([\"networkAttributes\", 1]);\n    }\n    counts.push([\"nodes\", snapshot.nodeCount], [\"edges\", edges.length]);\n    if (nodeBypassRows.length > 0) {\n        counts.push([\"nodeBypasses\", nodeBypassRows.length]);\n    }\n    if (edgeBypassRows.length > 0) {\n        counts.push([\"edgeBypasses\", edgeBypassRows.length]);\n    }\n    for (const [name, elements] of opaqueAspects) {\n        counts.push([name, elements.length]);\n    }\n\n    yield '[{\"CXVersion\":\"2.0\",\"hasFragments\":false},\\n';\n    yield `{\"metaData\":${stringify(counts.map(([name, elementCount]) => ({ name, elementCount })))}},\\n`;\n    if (hasDeclarations) {\n        yield `{\"attributeDeclarations\":[${stringify(declarationsElement)}]},\\n`;\n    }\n    if (Object.keys(network).length > 0) {\n        yield `{\"networkAttributes\":[${stringify(network)}]},\\n`;\n    }\n    yield* block(\"nodes\", snapshot.nodeCount, (i) => stringify(nodeElement(p, ids, i)));\n    yield* block(\"edges\", edges.length, (k) => {\n        const e = edges[k];\n        const element: Record<string, unknown> = {\n            id: p.edgeIds[e],\n            s: ids.idAt(src[e]),\n            t: ids.idAt(dst[e]),\n        };\n        let v = attributesOf(p.edgeAttrs, e);\n        if (p.weights.isExplicit(e)) {\n            const w = p.weights.value(e);\n            v ??= {};\n            v[WEIGHT_ATTRIBUTE] = Number.isFinite(w) ? w : null;\n        }\n        if (v !== null) {\n            element.v = v;\n        }\n        return stringify(element);\n    });\n    if (nodeBypassRows.length > 0) {\n        yield* block(\"nodeBypasses\", nodeBypassRows.length, (k) => {\n            const i = nodeBypassRows[k];\n            return stringify({ id: ids.idAt(i), v: bypassValues(p.nodeBypasses, i) });\n        });\n    }\n    if (edgeBypassRows.length > 0) {\n        yield* block(\"edgeBypasses\", edgeBypassRows.length, (k) => {\n            const e = edgeBypassRows[k];\n            return stringify({ id: p.edgeIds[e], v: bypassValues(p.edgeBypasses, e) });\n        });\n    }\n    for (const [name, elements] of opaqueAspects) {\n        yield* block(name, elements.length, (k) => stringify(elements[k]));\n    }\n    yield '{\"status\":[{\"error\":\"\",\"success\":true}]}]\\n';\n}\n\n/**\n * The text of one aspect block, element by element.\n * @param aspect - the aspect name\n * @param count - its element count\n * @param element - the JSON text of element k\n * @returns the block's text parts\n */\nfunction block(aspect: string, count: number, element: (k: number) => string): Generator<string, void, undefined> {\n    return aspectBlock(\n        aspect,\n        (function* elements(): Generator<string, void, undefined> {\n            for (let k = 0; k < count; k++) {\n                yield element(k);\n            }\n        })(),\n    );\n}\n\n/**\n * The element of node i.\n * @param p - the plan\n * @param ids - the written ids\n * @param i - the node index\n * @returns the element\n */\nfunction nodeElement(p: Plan, ids: WrittenIds, i: number): Record<string, unknown> {\n    const element: Record<string, unknown> = { id: ids.idAt(i) };\n    if (p.position?.isSet(i) === true) {\n        const point = p.position.value(i) as ArrayLike<number>;\n        if (Number.isFinite(point[0]) && Number.isFinite(point[1])) {\n            element.x = point[0];\n            element.y = point[1] === 0 ? 0 : -point[1];\n            if (p.positionZ && Number.isFinite(point[2])) {\n                element.z = point[2];\n            }\n        }\n    }\n    if (p.z?.isSet(i) === true) {\n        const z = p.z.value(i);\n        if (typeof z === \"number\" && Number.isFinite(z)) {\n            element.z = z;\n        }\n    }\n    let v = attributesOf(p.nodeAttrs, i);\n    if (p.originalIds && ids.isChanged(i)) {\n        v ??= {};\n        v[ORIGINAL_ID_ATTRIBUTE] = String(ids.originalAt(i));\n    }\n    if (v !== null) {\n        element.v = v;\n    }\n    return element;\n}\n\n/**\n * The rows with at least one bypass value.\n * @param columns - the bypass columns\n * @param rows - the row count\n * @returns the rows, ascending\n */\nfunction bypassRows(columns: readonly Column[], rows: number): number[] {\n    const out: number[] = [];\n    if (columns.length === 0) {\n        return out;\n    }\n    for (let i = 0; i < rows; i++) {\n        if (columns.some((c) => c.isSet(i))) {\n            out.push(i);\n        }\n    }\n    return out;\n}\n\n/**\n * The bypass values of one row.\n * @param columns - the bypass columns\n * @param row - the row\n * @returns property -> value\n */\nfunction bypassValues(columns: readonly Column[], row: number): Record<string, unknown> {\n    const out: Record<string, unknown> = {};\n    for (const column of columns) {\n        if (column.isSet(row)) {\n            // the visual property's own name: a column renamed for a clash with an attribute keeps it in origin.id\n            const property = column.meta.origin?.id;\n            out[typeof property === \"string\" && property.length > 0 ? property : column.meta.name] = column.value(row);\n        }\n    }\n    return out;\n}\n\n/**\n * The CX2 exporter plugin.\n * @category Built-in formats\n */\nexport const cx2Exporter: GraphExporter<Cx2ExportOptions> = Object.freeze({\n    format: CX2_FORMAT,\n    options: Object.freeze([]),\n    capabilities: CX2_CAPABILITIES,\n\n    /**\n     * Pre-flight: what export() would lose, without writing anything.\n     * @param snapshot - the snapshot\n     * @param options - the common options\n     * @returns the notes, empty when the export is exact\n     */\n    check(snapshot: GraphSnapshot, options?: Cx2ExportOptions): readonly LossNote[] {\n        return Object.freeze([...plan(snapshot, resolveExportOptions(options)).notes]);\n    },\n\n    /**\n     * Write the document as UTF-8 chunks.\n     * @param snapshot - the snapshot\n     * @param options - the common options\n     * @returns the chunks\n     */\n    export(snapshot: GraphSnapshot, options?: Cx2ExportOptions): AsyncIterable<Uint8Array> {\n        return encodeChunks(write(snapshot, plan(snapshot, resolveExportOptions(options))));\n    },\n\n    /**\n     * Write the document as one string.\n     * @param snapshot - the snapshot\n     * @param options - the common options\n     * @returns the document\n     */\n    exportToString(snapshot: GraphSnapshot, options?: Cx2ExportOptions): Promise<string> {\n        return joinText(write(snapshot, plan(snapshot, resolveExportOptions(options))));\n    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package/dist/chunks/{exporter-DhtW6FxK.js → exporter-JubAlNWi.js}

@@ -1,6 +1,6 @@
 import { GraphFormatError, INVALID_INDEX } from "@graphty/graph-format";
-import { S as SINK_OPTION_CODE, O as OPTION_IGNORED_CODE, R as ROLE_TAKEN_CODE, ay as RENAMED_CODE, I as ID_MERGED_CODE, i as DANGLING_REFERENCE_CODE, g as UNKNOWN_ELEMENT_CODE, o as DUPLICATE_ATTRIBUTE_CODE, n as DUPLICATE_NODE_CODE, a3 as BAD_VALUE_CODE, t as MISSING_ID_CODE, w as UNKNOWN_ENCODING_CODE, x as ENCODING_FALLBACK_CODE, y as INVALID_ENCODING_CODE, z as INVALID_UTF8_CODE, E as EMPTY_INPUT_CODE, F as ELEMENT_ISSUE, G as INPUT_ISSUE, al as resolveImportOptions, a8 as ImportReportBuilder, ao as reportSinkOptions, an as reportUnusedOptions, am as throwIfAborted, b as plural, a1 as declareResolved, ar as IdCoercer, aq as DirectionResolver, $ as agree, az as LineReader, c as capabilities, L as LOSS, au as ROLE_ASSUMED_CODE, aA as NODE_ORDER_CODE, aB as GRAPH_COLUMN_AS_METADATA_CODE, aC as TYPEDEF_NODES_CODE, aD as RELATION_ASSUMED_CODE, at as COLUMN_AS_PROPERTY_VALUE_CODE, r as resolveExportOptions, p as pairFolding, e as explicitWeights, av as formatNumber } from "./export-CHd4tQE2.js";
-import { S as SYNONYM_SCOPES, O as OBO_NODE_COLUMNS, o as oboColumnDecl, P as PLACEHOLDER_COLUMN, f as framelessNodes, m as movedNodes, s as slotColumn, c as capabilityNotes, e as emptyColumnNotes, a as cellOf, F as FRAME_KINDS$1, U as UNWRITTEN_ROLES, n as notePropertyColumn, b as fitsVocabulary, i as isQualifierRecord, t as textOf } from "./ontology-export-Bab4eUA8.js";
+import { S as SINK_OPTION_CODE, O as OPTION_IGNORED_CODE, R as ROLE_TAKEN_CODE, ay as RENAMED_CODE, I as ID_MERGED_CODE, i as DANGLING_REFERENCE_CODE, g as UNKNOWN_ELEMENT_CODE, o as DUPLICATE_ATTRIBUTE_CODE, n as DUPLICATE_NODE_CODE, a3 as BAD_VALUE_CODE, t as MISSING_ID_CODE, w as UNKNOWN_ENCODING_CODE, x as ENCODING_FALLBACK_CODE, y as INVALID_ENCODING_CODE, z as INVALID_UTF8_CODE, E as EMPTY_INPUT_CODE, F as ELEMENT_ISSUE, G as INPUT_ISSUE, al as resolveImportOptions, a8 as ImportReportBuilder, ao as reportSinkOptions, an as reportUnusedOptions, am as throwIfAborted, b as plural, a1 as declareResolved, ar as IdCoercer, aq as DirectionResolver, $ as agree, az as LineReader, c as capabilities, L as LOSS, au as ROLE_ASSUMED_CODE, aA as NODE_ORDER_CODE, aB as GRAPH_COLUMN_AS_METADATA_CODE, aC as TYPEDEF_NODES_CODE, aD as RELATION_ASSUMED_CODE, at as COLUMN_AS_PROPERTY_VALUE_CODE, r as resolveExportOptions, p as pairFolding, e as explicitWeights, av as formatNumber } from "./export-CVi12U7J.js";
+import { S as SYNONYM_SCOPES, O as OBO_NODE_COLUMNS, o as oboColumnDecl, P as PLACEHOLDER_COLUMN, f as framelessNodes, m as movedNodes, s as slotColumn, c as capabilityNotes, e as emptyColumnNotes, a as cellOf, F as FRAME_KINDS$1, U as UNWRITTEN_ROLES, n as notePropertyColumn, b as fitsVocabulary, i as isQualifierRecord, t as textOf } from "./ontology-export-b0GLNIj-.js";
 import { j as joinText, e as encodeChunks } from "./writer-DxjgHwSe.js";
 const ESCAPES = Object.freeze({
   n: "\n",
@@ -14,14 +14,14 @@ function unescapeObo(text) {
   }
   let out = "";
   for (let i = 0; i < text.length; i++) {
-    const ch = text[i];
+    const ch = text.charAt(i);
     if (ch !== "\\") {
       out += ch;
       continue;
     }
     i++;
     if (i < text.length) {
-      const next = text[i];
+      const next = text.charAt(i);
       out += ESCAPES[next] ?? next;
     }
   }
@@ -29,7 +29,7 @@ function unescapeObo(text) {
 }
 function isEscaped(text, index) {
   let run = 0;
-  for (let i = index - 1; i >= 0 && text[i] === "\\"; i--) {
+  for (let i = index - 1; i >= 0 && text.charAt(i) === "\\"; i--) {
     run++;
   }
   return run % 2 === 1;
@@ -41,8 +41,8 @@ function splitFormFeeds(line) {
   const pieces = [];
   let quoted = false;
   let start = 0;
-  for (let i = 0; i < line.length; i += line[i] === "\\" ? 2 : 1) {
-    const ch = line[i];
+  for (let i = 0; i < line.length; i += line.charAt(i) === "\\" ? 2 : 1) {
+    const ch = line.charAt(i);
     if (ch === '"') {
       quoted = !quoted;
     } else if (ch === "\f" && !quoted) {
@@ -58,11 +58,11 @@ function endsWithContinuation(line) {
 }
 function splitTagValue(line) {
   for (let i = 0; i < line.length; i++) {
-    if (line[i] === "\\") {
+    if (line.charAt(i) === "\\") {
       i++;
       continue;
     }
-    if (line[i] === ":") {
+    if (line.charAt(i) === ":") {
       return { tag: unescapeObo(line.slice(0, i).trim()), rest: line.slice(i + 1).trimStart() };
     }
   }
@@ -71,12 +71,12 @@ function splitTagValue(line) {
 function stripComment(rest) {
   let quoted = false;
   for (let i = 0; i < rest.length; i++) {
-    const ch = rest[i];
+    const ch = rest.charAt(i);
     if (ch === "\\") {
       i++;
       continue;
     }
-    const atStart = i === 0 || rest[i - 1] === " " || rest[i - 1] === "	";
+    const atStart = i === 0 || rest.charAt(i - 1) === " " || rest.charAt(i - 1) === "	";
     if (ch === '"' && (quoted || atStart)) {
       quoted = !quoted;
     } else if (ch === "!" && !quoted && atStart) {
@@ -93,7 +93,7 @@ function splitQualifiers(value) {
   const parsed = [];
   let end = value.length;
   let badBlock = null;
-  while (end > 0 && value[end - 1] === "}" && !isEscaped(value, end - 1)) {
+  while (end > 0 && value.charAt(end - 1) === "}" && !isEscaped(value, end - 1)) {
     const open = blocks.get(end - 1) ?? -1;
     const block = open < 0 ? null : parseQualifiers(value.slice(open + 1, end - 1));
     if (block === null) {
@@ -102,7 +102,7 @@ function splitQualifiers(value) {
     }
     parsed.push(block);
     end = open;
-    while (end > 0 && /\s/.test(value[end - 1])) {
+    while (end > 0 && /\s/.test(value.charAt(end - 1))) {
       end--;
     }
   }
@@ -120,7 +120,7 @@ function braceBlocks(value) {
   let quoted = false;
   let open = -1;
   for (let i = 0; i < value.length; i++) {
-    const ch = value[i];
+    const ch = value.charAt(i);
     if (ch === "\\") {
       i++;
       continue;
@@ -139,8 +139,8 @@ function braceBlocks(value) {
 function unclosedBlock(value) {
   let quoted = false;
   let open = -1;
-  for (let i = 0; i < value.length; i += value[i] === "\\" ? 2 : 1) {
-    const ch = value[i];
+  for (let i = 0; i < value.length; i += value.charAt(i) === "\\" ? 2 : 1) {
+    const ch = value.charAt(i);
     if (ch === "\\") {
       continue;
     }
@@ -175,7 +175,7 @@ function parseQualifiers(inner) {
   const n = inner.length;
   let any = false;
   while (i < n) {
-    while (i < n && (inner[i] === " " || inner[i] === "	" || inner[i] === ",")) {
+    while (i < n && (inner.charAt(i) === " " || inner.charAt(i) === "	" || inner.charAt(i) === ",")) {
       i++;
     }
     if (i >= n) {
@@ -190,11 +190,11 @@ function parseQualifiers(inner) {
       return null;
     }
     i = eq + 1;
-    while (i < n && (inner[i] === " " || inner[i] === "	")) {
+    while (i < n && (inner.charAt(i) === " " || inner.charAt(i) === "	")) {
       i++;
     }
     let value;
-    if (inner[i] === '"') {
+    if (inner.charAt(i) === '"') {
       const end = closingQuote(inner, i + 1);
       if (end < 0) {
         return null;
@@ -203,8 +203,8 @@ function parseQualifiers(inner) {
       i = end + 1;
     } else {
       let end = i;
-      while (end < n && inner[end] !== ",") {
-        end += inner[end] === "\\" ? 2 : 1;
+      while (end < n && inner.charAt(end) !== ",") {
+        end += inner.charAt(end) === "\\" ? 2 : 1;
       }
       value = unescapeObo(inner.slice(i, end).trim());
       i = end;
@@ -216,9 +216,9 @@ function parseQualifiers(inner) {
 }
 function closingQuote(text, from) {
   for (let i = from; i < text.length; i++) {
-    if (text[i] === "\\") {
+    if (text.charAt(i) === "\\") {
       i++;
-    } else if (text[i] === '"') {
+    } else if (text.charAt(i) === '"') {
       return i;
     }
   }
@@ -229,7 +229,7 @@ function tokenize(value) {
   const n = value.length;
   let i = 0;
   while (i < n) {
-    const ch = value[i];
+    const ch = value.charAt(i);
     if (ch === " " || ch === "	") {
       i++;
       continue;
@@ -238,8 +238,8 @@ function tokenize(value) {
       const end2 = closingQuote(value, i + 1);
       const stop = end2 < 0 ? n : end2;
       let after = stop + 1;
-      if (end2 >= 0 && value[after] === "@") {
-        while (after < n && value[after] !== " " && value[after] !== "	") {
+      if (end2 >= 0 && value.charAt(after) === "@") {
+        while (after < n && value.charAt(after) !== " " && value.charAt(after) !== "	") {
           after++;
         }
       }
@@ -260,8 +260,8 @@ function tokenize(value) {
       continue;
     }
     let end = i;
-    while (end < n && value[end] !== " " && value[end] !== "	") {
-      end += value[end] === "\\" ? 2 : 1;
+    while (end < n && value.charAt(end) !== " " && value.charAt(end) !== "	") {
+      end += value.charAt(end) === "\\" ? 2 : 1;
     }
     tokens.push({ kind: "word", text: unescapeObo(value.slice(i, Math.min(end, n))), unterminated: false });
     i = end;
@@ -271,7 +271,7 @@ function tokenize(value) {
 function closingBracket(text, from) {
   let quoted = false;
   for (let i = from; i < text.length; i++) {
-    const ch = text[i];
+    const ch = text.charAt(i);
     if (ch === "\\") {
       i++;
     } else if (ch === '"') {
@@ -286,9 +286,9 @@ function parseXref(raw) {
   const { value, qualifiers } = splitQualifiers(raw.trim());
   let quote = -1;
   for (let i = 0; i < value.length; i++) {
-    if (value[i] === "\\") {
+    if (value.charAt(i) === "\\") {
       i++;
-    } else if (value[i] === '"') {
+    } else if (value.charAt(i) === '"') {
       quote = i;
       break;
     }
@@ -318,7 +318,7 @@ function parseXrefList(inner) {
     }
   };
   for (let i = 0; i < inner.length; i++) {
-    const ch = inner[i];
+    const ch = inner.charAt(i);
     if (ch === "\\") {
       i++;
     } else if (ch === '"') {
@@ -339,7 +339,7 @@ function hasStrayBrace(value) {
   let quoted = false;
   let listed = false;
   for (let i = 0; i < value.length; i++) {
-    const ch = value[i];
+    const ch = value.charAt(i);
     if (ch === "\\") {
       i++;
     } else if (ch === '"') {
@@ -3462,4 +3462,4 @@ export {
   oboImporter as c,
   oboExporter as o
 };
-//# sourceMappingURL=exporter-DhtW6FxK.js.map
+//# sourceMappingURL=exporter-JubAlNWi.js.map