@graphty/graph-io 0.3.24 → 0.3.26

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (581) hide show
  1. package/README.md +49 -414
  2. package/dist/chunks/children-CL3Cy0ez.js.map +1 -1
  3. package/dist/chunks/choose-BbJI55dx.js +56 -0
  4. package/dist/chunks/choose-BbJI55dx.js.map +1 -0
  5. package/dist/chunks/constants-BCsFsMj4.js +231 -0
  6. package/dist/chunks/constants-BCsFsMj4.js.map +1 -0
  7. package/dist/chunks/{escape-B-tkk_Cl.js → escape-D0g6NNUy.js} +382 -92
  8. package/dist/chunks/escape-D0g6NNUy.js.map +1 -0
  9. package/dist/chunks/export-BTI4yQgy.js +4333 -0
  10. package/dist/chunks/export-BTI4yQgy.js.map +1 -0
  11. package/dist/chunks/exporter-BMqk5oxW.js +3465 -0
  12. package/dist/chunks/exporter-BMqk5oxW.js.map +1 -0
  13. package/dist/chunks/{importer-eUREhBGj.js → exporter-Cra2GYcN.js} +4969 -3201
  14. package/dist/chunks/exporter-Cra2GYcN.js.map +1 -0
  15. package/dist/chunks/{exporter-BGrsWamJ.js → exporter-Dxh231ZF.js} +38 -229
  16. package/dist/chunks/exporter-Dxh231ZF.js.map +1 -0
  17. package/dist/chunks/{exporter-DIeGJXAZ.js → exporter-tne475KK.js} +22 -20
  18. package/dist/chunks/exporter-tne475KK.js.map +1 -0
  19. package/dist/chunks/importer-90YWhJoF.js +2811 -0
  20. package/dist/chunks/importer-90YWhJoF.js.map +1 -0
  21. package/dist/chunks/{importer-D_e7e7LX.js → importer-Bcl1d4xH.js} +398 -145
  22. package/dist/chunks/importer-Bcl1d4xH.js.map +1 -0
  23. package/dist/chunks/{importer-BWY2FFc5.js → importer-BfIsp1f9.js} +255 -77
  24. package/dist/chunks/importer-BfIsp1f9.js.map +1 -0
  25. package/dist/chunks/{importer-zGLo8Dg_.js → importer-C_TEA1zJ.js} +484 -157
  26. package/dist/chunks/importer-C_TEA1zJ.js.map +1 -0
  27. package/dist/chunks/{importer-DET1tg6s.js → importer-DCjOvO7U.js} +1687 -310
  28. package/dist/chunks/importer-DCjOvO7U.js.map +1 -0
  29. package/dist/chunks/{importer-vi3bSdtw.js → importer-DfVu6j59.js} +509 -76
  30. package/dist/chunks/importer-DfVu6j59.js.map +1 -0
  31. package/dist/chunks/{importer-DIrbbnAf.js → importer-Dku_VAIY.js} +585 -226
  32. package/dist/chunks/importer-Dku_VAIY.js.map +1 -0
  33. package/dist/chunks/json-elements-3tnyt5uZ.js +1225 -0
  34. package/dist/chunks/json-elements-3tnyt5uZ.js.map +1 -0
  35. package/dist/chunks/ontology-export-B9Tcf37D.js +357 -0
  36. package/dist/chunks/ontology-export-B9Tcf37D.js.map +1 -0
  37. package/dist/chunks/{records-dbRkxwaq.js → records-CQXT__mY.js} +298 -114
  38. package/dist/chunks/records-CQXT__mY.js.map +1 -0
  39. package/dist/chunks/{text-Dr0Ifpag.js → text-DmcUs5_Q.js} +29 -11
  40. package/dist/chunks/text-DmcUs5_Q.js.map +1 -0
  41. package/dist/chunks/{writer-C7flM-Ih.js → writer-DxjgHwSe.js} +19 -1
  42. package/dist/chunks/writer-DxjgHwSe.js.map +1 -0
  43. package/dist/csv.js +951 -261
  44. package/dist/csv.js.map +1 -1
  45. package/dist/cx.js +6 -3
  46. package/dist/cx2.js +2 -2
  47. package/dist/cys.js +6 -3
  48. package/dist/dot.js +1 -1
  49. package/dist/gexf.js +554 -122
  50. package/dist/gexf.js.map +1 -1
  51. package/dist/gml.js +342 -85
  52. package/dist/gml.js.map +1 -1
  53. package/dist/graph-io.js +1105 -213
  54. package/dist/graph-io.js.map +1 -1
  55. package/dist/graphml.js +3 -2
  56. package/dist/graphml.js.map +1 -1
  57. package/dist/json.js +3 -2
  58. package/dist/neo4j.js +564 -157
  59. package/dist/neo4j.js.map +1 -1
  60. package/dist/obo.js +6 -3
  61. package/dist/pajek.js +1 -1
  62. package/dist/src/children.d.ts +18 -6
  63. package/dist/src/children.d.ts.map +1 -1
  64. package/dist/src/children.js +6 -3
  65. package/dist/src/children.js.map +1 -1
  66. package/dist/src/common/attributes.d.ts +29 -11
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  68. package/dist/src/common/attributes.js +25 -7
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  70. package/dist/src/common/cell-budget.d.ts +9 -2
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  72. package/dist/src/common/cell-budget.js +11 -3
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  74. package/dist/src/common/choose.d.ts +19 -0
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  76. package/dist/src/common/choose.js +72 -0
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  78. package/dist/src/common/codes.d.ts +456 -66
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  82. package/dist/src/common/compare.d.ts +81 -0
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  84. package/dist/src/common/compare.js +394 -0
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  86. package/dist/src/common/cx-export.d.ts +123 -0
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  88. package/dist/src/common/cx-export.js +334 -0
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  90. package/dist/src/common/declared-types.d.ts +22 -2
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  94. package/dist/src/common/direction.d.ts +74 -50
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  96. package/dist/src/common/direction.js +47 -27
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  98. package/dist/src/common/escape.d.ts +21 -9
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  100. package/dist/src/common/escape.js +33 -17
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  102. package/dist/src/common/export.d.ts +144 -32
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  104. package/dist/src/common/export.js +216 -42
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  106. package/dist/src/common/format.d.ts +23 -1
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  108. package/dist/src/common/format.js +26 -1
  109. package/dist/src/common/format.js.map +1 -1
  110. package/dist/src/common/ids.d.ts +9 -2
  111. package/dist/src/common/ids.d.ts.map +1 -1
  112. package/dist/src/common/ids.js +6 -2
  113. package/dist/src/common/ids.js.map +1 -1
  114. package/dist/src/common/input.d.ts +122 -28
  115. package/dist/src/common/input.d.ts.map +1 -1
  116. package/dist/src/common/input.js +890 -124
  117. package/dist/src/common/input.js.map +1 -1
  118. package/dist/src/common/json-elements.d.ts +144 -20
  119. package/dist/src/common/json-elements.d.ts.map +1 -1
  120. package/dist/src/common/json-elements.js +868 -188
  121. package/dist/src/common/json-elements.js.map +1 -1
  122. package/dist/src/common/line-format.d.ts +90 -0
  123. package/dist/src/common/line-format.d.ts.map +1 -0
  124. package/dist/src/common/line-format.js +185 -0
  125. package/dist/src/common/line-format.js.map +1 -0
  126. package/dist/src/common/lists.d.ts +6 -1
  127. package/dist/src/common/lists.d.ts.map +1 -1
  128. package/dist/src/common/lists.js +2 -0
  129. package/dist/src/common/lists.js.map +1 -1
  130. package/dist/src/common/ontology-export.d.ts +167 -0
  131. package/dist/src/common/ontology-export.d.ts.map +1 -0
  132. package/dist/src/common/ontology-export.js +359 -0
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  134. package/dist/src/common/ontology.d.ts +25 -3
  135. package/dist/src/common/ontology.d.ts.map +1 -1
  136. package/dist/src/common/ontology.js +30 -9
  137. package/dist/src/common/ontology.js.map +1 -1
  138. package/dist/src/common/options.d.ts +62 -12
  139. package/dist/src/common/options.d.ts.map +1 -1
  140. package/dist/src/common/options.js +89 -11
  141. package/dist/src/common/options.js.map +1 -1
  142. package/dist/src/common/plural.d.ts +31 -0
  143. package/dist/src/common/plural.d.ts.map +1 -0
  144. package/dist/src/common/plural.js +46 -0
  145. package/dist/src/common/plural.js.map +1 -0
  146. package/dist/src/common/report.d.ts +72 -14
  147. package/dist/src/common/report.d.ts.map +1 -1
  148. package/dist/src/common/report.js +146 -22
  149. package/dist/src/common/report.js.map +1 -1
  150. package/dist/src/common/temporal.d.ts +22 -5
  151. package/dist/src/common/temporal.d.ts.map +1 -1
  152. package/dist/src/common/temporal.js +13 -2
  153. package/dist/src/common/temporal.js.map +1 -1
  154. package/dist/src/common/text.d.ts +39 -23
  155. package/dist/src/common/text.d.ts.map +1 -1
  156. package/dist/src/common/text.js +51 -21
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  158. package/dist/src/common/weights.d.ts +37 -4
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  160. package/dist/src/common/weights.js +61 -2
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  162. package/dist/src/common/writer.d.ts +19 -3
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  164. package/dist/src/common/writer.js +30 -2
  165. package/dist/src/common/writer.js.map +1 -1
  166. package/dist/src/common/xml.d.ts +125 -9
  167. package/dist/src/common/xml.d.ts.map +1 -1
  168. package/dist/src/common/xml.js +400 -83
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  170. package/dist/src/common/zip.d.ts +44 -4
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  174. package/dist/src/formats/csv/exporter.d.ts +80 -24
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  178. package/dist/src/formats/csv/header.d.ts +38 -9
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  190. package/dist/src/formats/csv/records.d.ts +95 -10
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@@ -1,6 +1,5 @@
1
1
  /**
2
- * The issue and loss codes shared by more than one format (design section 8.6: "a stable code
3
- * such as E_UNKNOWN_NODE or W_WIDENED"): one constant per condition, aliased by every format's
2
+ * The issue and loss codes shared by more than one format: one constant per condition, aliased by every format's
4
3
  * `<FMT>_ISSUE` / `<FMT>_LOSS` table, so a consumer can switch on a condition without knowing the
5
4
  * format and two importers never spell the same condition differently. A condition specific to one
6
5
  * format keeps that format's own `E_<FMT>_` / `W_<FMT>_` code next to its importer or exporter.
@@ -10,147 +9,540 @@
10
9
  * format prefix.
11
10
  */
12
11
  // ============================================================ importer issues
13
- /** The element (node, attribute, key, ...) has no id where the format requires one. */
12
+ /**
13
+ * The URL could not be fetched (network failure, CORS refusal or a non-2xx status).
14
+ * @category Issue and loss codes
15
+ */
16
+ export const FETCH_CODE = "E_FETCH";
17
+ /**
18
+ * The element (node, attribute, key, ...) has no id where the format requires one.
19
+ * @category Issue and loss codes
20
+ */
14
21
  export const MISSING_ID_CODE = "E_MISSING_ID";
15
- /** An edge has no source or no target. */
22
+ /**
23
+ * An edge has no source or no target.
24
+ * @category Issue and loss codes
25
+ */
16
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  export const MISSING_ENDPOINT_CODE = "E_MISSING_ENDPOINT";
17
- /** A node id declared twice; the second declaration merges into the first. */
27
+ /**
28
+ * A node id declared twice; the second declaration merges into the first.
29
+ * @category Issue and loss codes
30
+ */
18
31
  export const DUPLICATE_NODE_CODE = "W_DUPLICATE_NODE";
19
- /** The document declares no graph at all (fatal). */
32
+ /**
33
+ * The file declares no graph at all. The import stops.
34
+ * @category Issue and loss codes
35
+ */
20
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  export const NO_GRAPH_CODE = "E_NO_GRAPH";
21
- /** A second graph in one document is merged into the first. */
37
+ /**
38
+ * The file holds several graphs and only the first was read (GraphML and GEXF merge them into one graph instead). It is not added when `graphIndex` or `graphName` chose the graph.
39
+ * `importAllGraphs()` reads every one.
40
+ * @category Issue and loss codes
41
+ */
22
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  export const MULTIPLE_GRAPHS_CODE = "W_MULTIPLE_GRAPHS";
23
- /** The input is empty (fatal). */
43
+ /**
44
+ * The input is empty. The import stops.
45
+ * @category Issue and loss codes
46
+ */
24
47
  export const EMPTY_INPUT_CODE = "E_EMPTY_INPUT";
25
- /** The text grammar of the format is violated (fatal; the message carries the detail). */
48
+ /**
49
+ * The text breaks the format's syntax; the message says where and how. The import stops.
50
+ * @category Issue and loss codes
51
+ */
26
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  export const SYNTAX_CODE = "E_SYNTAX";
27
- /** The XML is not well-formed (fatal; the message carries the detail and the line). */
53
+ /**
54
+ * The XML is not well-formed; the message says where. The import stops.
55
+ * @category Issue and loss codes
56
+ */
28
57
  export const XML_SYNTAX_CODE = "E_XML_SYNTAX";
29
- /** An element the format does not define at that place was skipped. */
58
+ /**
59
+ * An element the format does not define at that place was skipped.
60
+ * @category Issue and loss codes
61
+ */
30
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  export const UNKNOWN_ELEMENT_CODE = "W_UNKNOWN_ELEMENT";
31
- /** Text where the format allows only elements was ignored. */
63
+ /**
64
+ * Text where the format allows only elements was ignored.
65
+ * @category Issue and loss codes
66
+ */
32
67
  export const STRAY_TEXT_CODE = "W_STRAY_TEXT";
33
- /** A `pid` / parent reference names a node the document never declares. */
68
+ /**
69
+ * A `pid` / parent reference names a node the document never declares.
70
+ * @category Issue and loss codes
71
+ */
34
72
  export const UNKNOWN_PARENT_CODE = "E_UNKNOWN_PARENT";
35
- /** A hyperedge under the `hyperedges: "error"` policy (fatal). */
73
+ /**
74
+ * A hyperedge (an edge with more than two ends) while `hyperedges` is "error". The import stops.
75
+ * @category Issue and loss codes
76
+ */
36
77
  export const HYPEREDGE_CODE = "E_HYPEREDGE";
37
- /** A declaration's key / attribute id is declared twice. */
78
+ /**
79
+ * A declaration's key / attribute id is declared twice.
80
+ * @category Issue and loss codes
81
+ */
38
82
  export const DUPLICATE_KEY_CODE = "E_DUPLICATE_KEY";
39
83
  /**
40
- * A column was renamed `<name>#<origin.id>` because the name was taken in the sink's table
41
- * (design section 5.6).
84
+ * An attribute was renamed `<name>#<suffix>` because another attribute already has its name, for example a repeated
85
+ * column header.
86
+ * @category Issue and loss codes
42
87
  */
43
88
  export const COLUMN_RENAMED_CODE = "W_COLUMN_RENAMED";
44
- /** A column's role was dropped because another column of the table already holds it (design section 5.5). */
89
+ /**
90
+ * A node or edge attribute is not written, because the format has nowhere to put it.
91
+ * @category Issue and loss codes
92
+ */
93
+ export const COLUMN_DROPPED_CODE = "W_COLUMN_DROPPED";
94
+ /**
95
+ * You read into a graph builder that already has an id, label or position attribute, so this file's one is kept as a
96
+ * plain attribute.
97
+ * @category Issue and loss codes
98
+ */
45
99
  export const ROLE_TAKEN_CODE = "W_ROLE_TAKEN";
46
- /** A long value beyond 2^53 was stored as the nearest f64 (design section 5.1). */
100
+ /**
101
+ * An integer beyond 2^53 was stored as the nearest 64-bit float; pass `long: "string"` to keep every digit.
102
+ * @category Issue and loss codes
103
+ */
47
104
  export const PRECISION_CODE = "W_PRECISION";
48
- /** Two distinct id texts became one number under ids "number" (design section 4.1). */
105
+ /**
106
+ * Two different id texts became the same number because `ids` is "number" (for example, "042" and "42"), so their nodes were
107
+ * merged.
108
+ * @category Issue and loss codes
109
+ */
49
110
  export const ID_MERGED_CODE = "W_ID_MERGED";
50
- /** A builder-policy option the caller asked for that the sink does not honour (design section 8.4). */
111
+ /**
112
+ * You read into your own graph builder, which was created with a different `addMissingNodes`, `duplicateEdges`,
113
+ * `selfLoops` or `weightDtype` than the option you passed; the builder's setting applies.
114
+ * @category Issue and loss codes
115
+ */
51
116
  export const SINK_OPTION_CODE = "W_SINK_OPTION";
52
- /** A common option the format has no use for (or cannot honour) was given a non-default value (design section 8.4). */
117
+ /**
118
+ * You set an option this format does not use; it had no effect. The message names the option.
119
+ * @category Issue and loss codes
120
+ */
53
121
  export const OPTION_IGNORED_CODE = "W_OPTION_IGNORED";
54
- /** An invalid UTF-8 sequence in the input (fatal). */
122
+ /**
123
+ * The input is not valid UTF-8. The import stops.
124
+ * @category Issue and loss codes
125
+ */
55
126
  export const INVALID_UTF8_CODE = "E_INVALID_UTF8";
56
- /** Bytes that are not valid in the encoding a BOM, a declaration or the `encoding` option chose (fatal). */
127
+ /**
128
+ * Some bytes are not valid in the encoding that was chosen (by a byte order mark, the file's own declaration or the
129
+ * `encoding` option). The import stops.
130
+ * @category Issue and loss codes
131
+ */
57
132
  export const INVALID_ENCODING_CODE = "E_INVALID_ENCODING";
58
- /** Bytes that are not valid UTF-8 (and declare no other encoding) were read as windows-1252. */
133
+ /**
134
+ * Bytes that are not valid UTF-8 (and declare no other encoding) were read as windows-1252.
135
+ * @category Issue and loss codes
136
+ */
59
137
  export const ENCODING_FALLBACK_CODE = "W_ENCODING_FALLBACK";
60
- /** The file declares an encoding the platform's TextDecoder does not know; the declaration is ignored. */
138
+ /**
139
+ * The file declares an encoding the platform's TextDecoder does not know; the declaration is ignored.
140
+ * @category Issue and loss codes
141
+ */
61
142
  export const UNKNOWN_ENCODING_CODE = "W_UNKNOWN_ENCODING";
62
- /** The sink refused the file's direction (locked or non-empty); the file is read as the sink's. */
143
+ /**
144
+ * A byte order mark, the `encoding` option and the encoding the file declares disagree, or the file
145
+ * declares UTF-16 over bytes that are not UTF-16; the message names which one applied (a BOM wins
146
+ * over the option and the declaration, the option over the declaration).
147
+ * @category Issue and loss codes
148
+ */
149
+ export const ENCODING_CONFLICT_CODE = "W_ENCODING_CONFLICT";
150
+ /**
151
+ * The text holds a control character, such as a NUL byte or an escape character, which is kept in the id or value it
152
+ * is part of; or it ends with a Ctrl-Z end-of-file marker, which was ignored. Reported once per import.
153
+ * @category Issue and loss codes
154
+ */
155
+ export const CONTROL_CHARACTER_CODE = "W_CONTROL_CHARACTER";
156
+ /**
157
+ * The input is a known kind of file that is not a graph: an HTML page, a PDF, compressed or zip data, or an image. The
158
+ * import stops.
159
+ * @category Issue and loss codes
160
+ */
161
+ export const FOREIGN_FORMAT_CODE = "E_FOREIGN_FORMAT";
162
+ /**
163
+ * More warnings of one code than a report keeps: the first ones are kept and this one warning (the
164
+ * suppressed code as its element) counts the rest.
165
+ * @category Issue and loss codes
166
+ */
167
+ export const ISSUES_SUPPRESSED_CODE = "W_ISSUES_SUPPRESSED";
168
+ /**
169
+ * An XML attribute the format does not define (or does not keep) on that element; it is not kept.
170
+ * @category Issue and loss codes
171
+ */
172
+ export const UNKNOWN_XML_ATTRIBUTE_CODE = "W_UNKNOWN_XML_ATTRIBUTE";
173
+ /**
174
+ * You read into a graph builder that already holds edges (or whose direction is locked), and its direction differs
175
+ * from the file's, so the file is read with the builder's direction. A builder without edges takes the file's
176
+ * direction.
177
+ * @category Issue and loss codes
178
+ */
63
179
  export const DIRECTION_REFUSED_CODE = "W_DIRECTION_REFUSED";
64
- /** Edges of the other direction were forced to the policy's direction. */
180
+ /**
181
+ * `onMixedDirection` ("directed" or "undirected") made edges take a direction the file did not give them. It can
182
+ * appear twice in one report: once for the direction the file declares and once for the edges that declared
183
+ * their own.
184
+ * @category Issue and loss codes
185
+ */
65
186
  export const DIRECTION_FORCED_CODE = "W_DIRECTION_FORCED";
66
- /** A mixed-direction file under onMixedDirection "error" (import), or a mixed snapshot under the same export policy. */
187
+ /**
188
+ * The graph has both directed and undirected edges and `onMixedDirection` is "error". An import stops; a save to a
189
+ * format that holds one direction per file fails with E_DIRECTED. Pass "directed" or "undirected" to read or write it
190
+ * anyway.
191
+ * @category Issue and loss codes
192
+ */
67
193
  export const MIXED_DIRECTION_CODE = "E_MIXED_DIRECTION";
68
- /** A `count` / `parse.nodes` hint the sink cannot reserve (ignored). */
194
+ /**
195
+ * A node or edge count the file announces is too large to reserve room for; it is ignored and the elements are read as
196
+ * they come.
197
+ * @category Issue and loss codes
198
+ */
69
199
  export const COUNT_HINT_CODE = "W_COUNT_HINT";
70
- /** The declared type is not one the format defines; the column is kept as string. */
200
+ /**
201
+ * The declared type is not one the format defines; the column is kept as string.
202
+ * @category Issue and loss codes
203
+ */
71
204
  export const UNKNOWN_ATTR_TYPE_CODE = "W_UNKNOWN_ATTR_TYPE";
72
- /** The declared default does not parse as the declared type; the column has no default. */
205
+ /**
206
+ * The declared default does not parse as the declared type; the column has no default.
207
+ * @category Issue and loss codes
208
+ */
73
209
  export const BAD_DEFAULT_CODE = "W_BAD_DEFAULT";
74
- /** A declared option does not parse as the declared type; the options are dropped. */
210
+ /**
211
+ * A declared option does not parse as the declared type; the options are dropped.
212
+ * @category Issue and loss codes
213
+ */
75
214
  export const BAD_OPTIONS_CODE = "W_BAD_OPTIONS";
76
- /** A repeated edge id in a format whose edge ids are unique; the second edge is skipped. */
215
+ /**
216
+ * A repeated edge id in a format whose edge ids are unique; the second edge is skipped.
217
+ * @category Issue and loss codes
218
+ */
77
219
  export const DUPLICATE_EDGE_ID_CODE = "E_DUPLICATE_EDGE_ID";
78
- /** A value does not parse as its declared type; the cell is left unset. */
220
+ /**
221
+ * A value does not parse as its declared type; the cell is left unset.
222
+ * @category Issue and loss codes
223
+ */
79
224
  export const BAD_VALUE_CODE = "E_BAD_VALUE";
80
225
  /**
81
- * A column's dtype was widened (design section 5.1) because a later value did not fit: an i32
82
- * column meeting a value above 2^31, two declared types for one attribute.
226
+ * An attribute's type was widened because a later value did not fit: an integer above 2^31 in an integer column, or
227
+ * two declared types for one attribute.
228
+ * @category Issue and loss codes
83
229
  */
84
230
  export const WIDENED_CODE = "W_WIDENED";
85
231
  /**
86
232
  * A reference that is not a containment link (an attribute's element id, a layout or bypass
87
233
  * entry, a subnetwork member, a view's network, an undeclared target) names nothing; reported
88
234
  * once per kind with the count.
235
+ * @category Issue and loss codes
89
236
  */
90
237
  export const DANGLING_REFERENCE_CODE = "W_DANGLING_REFERENCE";
91
- /** The same attribute twice on one element; one value is kept (the later, unless the format's specification says the first). */
238
+ /**
239
+ * The same attribute twice on one element; one value is kept (the later, unless the format's specification says the first).
240
+ * @category Issue and loss codes
241
+ */
92
242
  export const DUPLICATE_ATTRIBUTE_CODE = "W_DUPLICATE_ATTRIBUTE";
93
- /** A containment link would close a parent cycle; that one link is dropped. */
243
+ /**
244
+ * A containment link would close a parent cycle; that one link is dropped.
245
+ * @category Issue and loss codes
246
+ */
94
247
  export const PARENT_CYCLE_CODE = "E_PARENT_CYCLE";
95
- /** A formula (Cytoscape's `=ABS($x)`) is kept as its text; it is never evaluated. */
248
+ /**
249
+ * A formula (Cytoscape's `=ABS($x)`) is kept as its text; it is never evaluated.
250
+ * @category Issue and loss codes
251
+ */
96
252
  export const EQUATION_AS_TEXT_CODE = "W_EQUATION_AS_TEXT";
97
253
  /**
98
- * The file's style rules (defaults, mappings, dependencies, visual property aspects) are not
99
- * applied to the snapshot; recorded once per import, the message names what was not applied.
254
+ * The file's style rules (default styles, mappings, visual properties) are not applied to the graph. Reported once per
255
+ * import; the message names what was not applied.
256
+ * @category Issue and loss codes
100
257
  */
101
258
  export const STYLES_NOT_IMPORTED_CODE = "W_STYLES_NOT_IMPORTED";
102
- /** A CX array member that is not a one-key object holding an array or an object; the block is skipped. */
259
+ /**
260
+ * A CX file is an array of blocks, each an object with one key (`{"nodes": [...]}`). A member of that array
261
+ * that is not such a block cannot be read and is skipped; the rest of the file is read.
262
+ * @category Issue and loss codes
263
+ */
103
264
  export const BAD_ASPECT_BLOCK_CODE = "E_BAD_ASPECT_BLOCK";
104
- /** A CX aspect out of its place (after the post-metadata, a status that is not last, a block buffered for what it depends on). */
265
+ /**
266
+ * A CX array member holding several aspects (`{"nodes": [...], "edges": [...]}`); each array-valued key is read as its own fragment.
267
+ * @category Issue and loss codes
268
+ */
269
+ export const MULTI_ASPECT_FRAGMENT_CODE = "W_MULTI_ASPECT_FRAGMENT";
270
+ /**
271
+ * A CX aspect, an array of elements, written as one object (`{"nodes": {"@id": 1}}`); read as one element.
272
+ * @category Issue and loss codes
273
+ */
274
+ export const SINGLE_OBJECT_ASPECT_CODE = "W_SINGLE_OBJECT_ASPECT";
275
+ /**
276
+ * The document uses the bare tokens NaN, Infinity or -Infinity (Python's json writes them), which
277
+ * strict JSON does not allow; read as the numbers.
278
+ * @category Issue and loss codes
279
+ */
280
+ export const JSON_NONSTANDARD_NUMBER_CODE = "W_JSON_NONSTANDARD_NUMBER";
281
+ /**
282
+ * A CX aspect out of its place (after the post-metadata, a status that is not last, a block buffered for what it depends on).
283
+ * @category Issue and loss codes
284
+ */
105
285
  export const ASPECT_ORDER_CODE = "W_ASPECT_ORDER";
106
- /** A declared element count disagrees with what was read. */
286
+ /**
287
+ * A declared element count disagrees with what was read.
288
+ * @category Issue and loss codes
289
+ */
107
290
  export const COUNT_MISMATCH_CODE = "W_COUNT_MISMATCH";
108
- /** The producer marked the document as failed (CX `status.success: false`): it is incomplete (fatal). */
291
+ /**
292
+ * The program that wrote the file marked it as failed (CX `status.success: false`), so it is incomplete. The import
293
+ * stops.
294
+ * @category Issue and loss codes
295
+ */
109
296
  export const STATUS_FAILED_CODE = "E_STATUS_FAILED";
110
- /** The producer marked the document as successful but attached an error text. */
297
+ /**
298
+ * The producer marked the document as successful but attached an error text.
299
+ * @category Issue and loss codes
300
+ */
111
301
  export const STATUS_WARNING_CODE = "W_STATUS_WARNING";
112
302
  /**
113
303
  * The input is beyond a size limit (a zip's uncompressed total or ratio, a document longer than
114
304
  * one string); the same string as graph-format's E_TOO_LARGE, recorded with category "unsupported".
305
+ * @category Issue and loss codes
115
306
  */
116
307
  export const TOO_LARGE_CODE = "E_TOO_LARGE";
117
- /** `graphIndex` is beyond the graphs of the input, or `graphName` names none of them (fatal). */
308
+ /**
309
+ * A value that does not fit its attribute's type. An import records it for a value that does not parse as the
310
+ * type the file declares for it ("x" in an integer attribute): GraphML and GEXF leave that value unset, Neo4j CSV
311
+ * skips the row. A save throws it when an attribute value cannot be written in the format; `checkExport()` returns
312
+ * the `E_` note that names the attribute.
313
+ * @category Issue and loss codes
314
+ */
315
+ export const COLUMN_TYPE_CODE = "E_COLUMN_TYPE";
316
+ /**
317
+ * `graphIndex` is past the last graph in the file, or `graphName` matches none of them. The import stops, and
318
+ * the message lists the index and name of each graph the file holds.
319
+ * @category Issue and loss codes
320
+ */
118
321
  export const GRAPH_NOT_FOUND_CODE = "E_GRAPH_NOT_FOUND";
119
- /** `graphName` names more than one graph of the input; the message lists their indexes (fatal). */
322
+ /**
323
+ * `graphName` matches more than one graph; the message lists their positions. The import stops.
324
+ * @category Issue and loss codes
325
+ */
120
326
  export const AMBIGUOUS_GRAPH_NAME_CODE = "E_AMBIGUOUS_GRAPH_NAME";
327
+ /**
328
+ * A second edge between the same two nodes under `duplicateEdges: "error"`; the import stops.
329
+ * @category Issue and loss codes
330
+ */
331
+ export const DUPLICATE_EDGE_CODE = "E_DUPLICATE_EDGE";
332
+ /**
333
+ * An edge from a node to itself under `selfLoops: "error"`; the import stops.
334
+ * @category Issue and loss codes
335
+ */
336
+ export const SELF_LOOP_CODE = "E_SELF_LOOP";
337
+ /**
338
+ * The `duplicateEdges` option merged parallel edges into one edge per pair, so whatever told them apart (an OBO
339
+ * relation, a label) is lost. Recorded once, with the number merged.
340
+ * @category Issue and loss codes
341
+ */
342
+ export const EDGES_MERGED_CODE = "W_EDGES_MERGED";
343
+ /**
344
+ * Self-loops were removed by the `selfLoops: "drop"` option. Recorded once by importGraph() with the
345
+ * number removed.
346
+ * @category Issue and loss codes
347
+ */
348
+ export const SELF_LOOPS_DROPPED_CODE = "W_SELF_LOOPS_DROPPED";
349
+ /**
350
+ * An option name that no format and no load or save function takes, most often a misspelling (`delimeter`). The
351
+ * option has no effect. A load records it as a warning, and `checkExport()` returns it as a note. Reported only while
352
+ * every registered format lists its options, as the built-in formats do.
353
+ * @category Issue and loss codes
354
+ */
355
+ export const UNKNOWN_OPTION_CODE = "W_UNKNOWN_OPTION";
356
+ /**
357
+ * A line the `parseLine` function of a format made with defineLineFormat() could not read (it threw). The line is
358
+ * skipped; the message is the one the function threw with.
359
+ * @category Issue and loss codes
360
+ */
361
+ export const BAD_LINE_CODE = "E_BAD_LINE";
362
+ /**
363
+ * The `weightFrom` option names an attribute no edge has a value for, so the graph has no weights. The usual cause
364
+ * is one options object shared between formats: GML and Pajek keep their weights in `value`, not `weight`. Recorded
365
+ * once by importGraph().
366
+ * @category Issue and loss codes
367
+ */
368
+ export const WEIGHT_NOT_FOUND_CODE = "W_WEIGHT_NOT_FOUND";
121
369
  // ============================================================ exporter loss notes
122
- /** A role column the format has no slot for is written as a plain attribute (the role is lost). */
370
+ /**
371
+ * An attribute with a role the format has no place for is written as a plain attribute; the role is lost.
372
+ * @category Issue and loss codes
373
+ */
123
374
  export const ROLE_DROPPED_CODE = "W_ROLE_DROPPED";
124
- /** A parents (multi-parent) column in a format with single containment only. */
375
+ /**
376
+ * A parents (multi-parent) column in a format with single containment only.
377
+ * @category Issue and loss codes
378
+ */
125
379
  export const PARENTS_DROPPED_CODE = "W_PARENTS_DROPPED";
126
- /** A start / end / timestamp column in a format without temporal support. */
380
+ /**
381
+ * A start / end / timestamp column in a format without temporal support.
382
+ * @category Issue and loss codes
383
+ */
127
384
  export const TEMPORAL_DROPPED_CODE = "W_TEMPORAL_DROPPED";
128
- /** A mutual pair is written as two directed edges without the mutual mark. */
385
+ /**
386
+ * A mutual pair is written as two directed edges without the mutual mark.
387
+ * @category Issue and loss codes
388
+ */
129
389
  export const MUTUAL_EXPANDED_CODE = "W_MUTUAL_EXPANDED";
130
- /** A mutual pair is written as one undirected edge; the pair reads back undirected, the mark is lost. */
390
+ /**
391
+ * A mutual pair is written as one undirected edge; the pair reads back undirected, the mark is lost.
392
+ * @category Issue and loss codes
393
+ */
131
394
  export const MUTUAL_AS_UNDIRECTED_CODE = "W_MUTUAL_AS_UNDIRECTED";
132
- /** Node ids whose written text reads back as the other type under the importer's id rule. */
395
+ /**
396
+ * Node ids whose written text reads back as the other type under the importer's id rule.
397
+ * @category Issue and loss codes
398
+ */
133
399
  export const ID_TEXT_TYPE_CODE = "W_ID_TEXT_TYPE";
134
- /** Two node ids share one written text; export() throws E_INVALID_ID. */
400
+ /**
401
+ * Two node ids would be written as the same text (the number 5 and the text "5"); the save fails with E_INVALID_ID.
402
+ * @category Issue and loss codes
403
+ */
135
404
  export const ID_TEXT_COLLISION_CODE = "E_ID_TEXT_COLLISION";
136
- /** A `<column>.text` companion (design section 5.1) the format cannot carry. */
405
+ /**
406
+ * A `<column>.text` companion the format cannot carry.
407
+ * @category Issue and loss codes
408
+ */
137
409
  export const TEMPORAL_TEXT_DROPPED_CODE = "W_TEMPORAL_TEXT_DROPPED";
138
- /** A plain column named like the importer's weight key reads back as THE weight. */
410
+ /**
411
+ * The graph has edge weights and the file does not keep them: every edge reads back with the default weight 1.
412
+ * @category Issue and loss codes
413
+ */
414
+ export const WEIGHTS_DROPPED_CODE = "W_WEIGHTS_DROPPED";
415
+ /**
416
+ * An attribute without the weight role is named like the attribute graph-io reads weights from (for example, `weight`), so it
417
+ * reads back as the edge weight.
418
+ * @category Issue and loss codes
419
+ */
139
420
  export const WEIGHT_KEY_CLASH_CODE = "W_WEIGHT_KEY_CLASH";
140
- /** A role-less column whose written name the importer maps to a role. */
421
+ /**
422
+ * An attribute without a role is written where the format keeps a role (for example, a `name` column as the label), and reads
423
+ * back with that role.
424
+ * @category Issue and loss codes
425
+ */
141
426
  export const ROLE_ASSUMED_CODE = "W_ROLE_ASSUMED";
142
- /** A role column written into the format's slot reads back under the importer's fixed name. */
427
+ /**
428
+ * An attribute with a role (for example, the label) is written where the format keeps that role, and reads back under the name
429
+ * the format's importer gives it.
430
+ * @category Issue and loss codes
431
+ */
143
432
  export const COLUMN_RENAMED_LOSS_CODE = "W_COLUMN_NAME_CHANGED";
144
- /** A declared column whose every row is unset is not written by a format without declarations. */
433
+ /**
434
+ * A declared column whose every row is unset is not written by a format without declarations.
435
+ * @category Issue and loss codes
436
+ */
145
437
  export const EMPTY_COLUMN_DROPPED_CODE = "W_EMPTY_COLUMN_DROPPED";
146
- /** A string / dict column whose cardinality makes the importer read it back as the other storage class. */
438
+ /**
439
+ * A text attribute reads back as a dictionary attribute, or the reverse, because the importer chooses by how often its
440
+ * values repeat. The values are the same.
441
+ * @category Issue and loss codes
442
+ */
147
443
  export const STORAGE_CLASS_CODE = "W_STORAGE_CLASS_CHANGED";
148
- /** An f64 column whose set values are all integral reads back as i32 through an untyped format. */
444
+ /**
445
+ * A number attribute whose values are all whole numbers reads back as integers, because the format does not record the
446
+ * type.
447
+ * @category Issue and loss codes
448
+ */
149
449
  export const INTEGRAL_F64_CODE = "W_INTEGRAL_F64_AS_I32";
150
- /** A text cell that reads back as a number or boolean under the 5.1 grammar (its lexical form may change). */
450
+ /**
451
+ * A text value that reads back as a number or a boolean, because the format does not record that it was text (the text
452
+ * "42" reads back as the number 42).
453
+ * @category Issue and loss codes
454
+ */
151
455
  export const TEXT_INFERRED_CODE = "W_TEXT_INFERRED";
152
- /** A string cell holding a character XML 1.0 forbids; export() throws E_COLUMN_TYPE. */
456
+ /**
457
+ * A text value holds a character XML 1.0 forbids (most control characters); the save fails with E_COLUMN_TYPE.
458
+ * @category Issue and loss codes
459
+ */
153
460
  export const XML_ILLEGAL_CHAR_CODE = "E_XML_ILLEGAL_CHAR";
154
- /** A dict column without declared options gains one from its dictionary on re-import. */
461
+ /**
462
+ * An ontology exporter (OBO, OBO Graphs) writes a node column outside its vocabulary as property values; it reads back inside the `property_value` column.
463
+ * @category Issue and loss codes
464
+ */
465
+ export const COLUMN_AS_PROPERTY_VALUE_CODE = "W_COLUMN_AS_PROPERTY_VALUE";
466
+ /**
467
+ * An ontology exporter writes an edge without a relation as `is_a` (or the relation the caller chose).
468
+ * @category Issue and loss codes
469
+ */
470
+ export const RELATION_ASSUMED_CODE = "W_RELATION_ASSUMED";
471
+ /**
472
+ * An ontology exporter writes Typedef (property) nodes; they read back as nodes only under the importer's `typedefs: "nodes"`.
473
+ * @category Issue and loss codes
474
+ */
475
+ export const TYPEDEF_NODES_CODE = "W_TYPEDEF_NODES";
476
+ /**
477
+ * A graph attribute is written into the file's metadata and reads back in `snapshot.meta.extra`, not as a graph
478
+ * attribute.
479
+ * @category Issue and loss codes
480
+ */
481
+ export const GRAPH_COLUMN_AS_METADATA_CODE = "W_GRAPH_COLUMN_AS_METADATA";
482
+ /**
483
+ * The file cannot record direction: an undirected graph's edges read back as directed, or the whole graph reads back
484
+ * with the importer's default direction.
485
+ * @category Issue and loss codes
486
+ */
487
+ export const DIRECTION_DROPPED_CODE = "W_DIRECTION_DROPPED";
488
+ /**
489
+ * NaN and the infinities cannot be written; they are written as null and read back unset.
490
+ * @category Issue and loss codes
491
+ */
492
+ export const NONFINITE_AS_NULL_CODE = "W_NONFINITE_AS_NULL";
493
+ /**
494
+ * The nodes read back in a different order.
495
+ * @category Issue and loss codes
496
+ */
497
+ export const NODE_ORDER_CODE = "W_NODE_ORDER";
498
+ /**
499
+ * A text attribute stored as a dictionary, without a declared list of allowed values, reads back with its distinct
500
+ * values as that list.
501
+ * @category Issue and loss codes
502
+ */
155
503
  export const OPTIONS_GAINED_CODE = "W_OPTIONS_GAINED";
504
+ // ============================================================ the graph builder
505
+ /**
506
+ * The issue codes every importer can record when the graph refuses an element, by name; every
507
+ * format's `<FMT>_ISSUE` table includes them. Each one skips that element and counts toward
508
+ * `errorLimit`.
509
+ * @category Issue and loss codes
510
+ */
511
+ export const ELEMENT_ISSUE = Object.freeze({
512
+ /** A node id of a type the graph cannot hold (an empty id, a non-finite number, an object). The node is skipped. */
513
+ INVALID_ID: "E_INVALID_ID",
514
+ /** An edge names a node the file never declares, while `addMissingNodes` is false. The edge is skipped. */
515
+ UNKNOWN_NODE: "E_UNKNOWN_NODE",
516
+ /**
517
+ * An edge weight that is not a number (text such as "2,5" with a decimal comma, NaN, a boolean). The whole edge is
518
+ * skipped, not only its weight.
519
+ */
520
+ INVALID_WEIGHT: "E_INVALID_WEIGHT",
521
+ /** A second edge between the same two nodes, while `duplicateEdges` is "error". The edge is skipped. */
522
+ DUPLICATE_EDGE: DUPLICATE_EDGE_CODE,
523
+ /** An edge from a node to itself, while `selfLoops` is "error". The edge is skipped. */
524
+ SELF_LOOP: SELF_LOOP_CODE,
525
+ /** An edge id declared twice. The second edge is skipped. */
526
+ DUPLICATE_EDGE_ID: DUPLICATE_EDGE_ID_CODE,
527
+ });
528
+ // ============================================================ the input layer
529
+ /**
530
+ * The issue codes every importer can record for input it cannot read (empty, too large, invalid
531
+ * bytes, not a graph file), by name; every format's `<FMT>_ISSUE` table includes them.
532
+ * @category Issue and loss codes
533
+ */
534
+ export const INPUT_ISSUE = Object.freeze({
535
+ /** The input is empty or holds only whitespace. The import stops. */
536
+ EMPTY_INPUT: EMPTY_INPUT_CODE,
537
+ /** The input, or one of its lines, is longer than a JavaScript string can hold. The import stops. */
538
+ TOO_LARGE: TOO_LARGE_CODE,
539
+ /** A byte order mark, the encoding option and the declared encoding disagree. */
540
+ ENCODING_CONFLICT: ENCODING_CONFLICT_CODE,
541
+ /** A control character or a stray U+FEFF in the text, or an ignored trailing Ctrl-Z. */
542
+ CONTROL_CHARACTER: CONTROL_CHARACTER_CODE,
543
+ /** The input is an HTML page, a PDF, compressed or zip data, or an image. The import stops. */
544
+ FOREIGN_FORMAT: FOREIGN_FORMAT_CODE,
545
+ /** Warnings of one code beyond the number a report keeps, counted in one warning. */
546
+ ISSUES_SUPPRESSED: ISSUES_SUPPRESSED_CODE,
547
+ });
156
548
  //# sourceMappingURL=codes.js.map
@@ -1 +1 @@
1
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