@graphty/graph-io 0.3.2 → 0.3.4

package/dist/csv.js

@@ -2,7 +2,7 @@ import { a$ as DICT_SAMPLE_ROWS, a_ as DictHeuristic, X as ROLE_TAKEN_CODE$1, o
 import { i as inferTextDtype, T as TextCellWriter, p as parseTextCell, W as WIDENING_UNSUPPORTED_CODE } from "./chunks/text-Dr0Ifpag.js";
 import { GraphFormatError, INVALID_INDEX } from "@graphty/graph-format";
 import { s as sniffNewline, a as sniffDelimiter, C as CsvRecordReader, B as BAD_QUOTE_CODE, U as UNCLOSED_QUOTE_CODE } from "./chunks/records-BKSMowhR.js";
-import { n as quoteCsvCell } from "./chunks/escape-CKied3Ri.js";
+import { n as quoteCsvCell } from "./chunks/escape-DXbOoLKl.js";
 const SOURCE_NAMES = Object.freeze([
   "source",
   "src",

package/dist/dot.js

@@ -1,4 +1,4 @@
-import { D, a, d, b } from "./chunks/importer-C6QcIRIb.js";
+import { D, a, d, b } from "./chunks/importer-xoHpRG5x.js";
 export {
   D as DOT_ISSUE,
   a as DOT_LOSS,

package/dist/gexf.js

@@ -1,6 +1,6 @@
 import { aM as TIME_TEXT_ROLE, aN as TIME_TEXT_SUFFIX, aF as resolveImportOptions, I as ImportReportBuilder, aC as reportSinkOptions, aD as reportUnusedOptions, t as textChunks, aa as XML_SYNTAX_CODE, a as throwIfAborted, v as IdCoercer, l as DirectionResolver, _ as STRAY_TEXT_CODE, K as NO_GRAPH_CODE, d as COUNT_HINT_CODE, aw as isWeightField, aO as declareAttribute, ai as declareResolved, y as MISSING_ID_CODE, k as DUPLICATE_NODE_CODE, a6 as UNKNOWN_PARENT_CODE, M as MISSING_ENDPOINT_CODE, i as DUPLICATE_EDGE_ID_CODE, aA as parseWeightText, aP as parseDeclaredTemporal, ah as declareCompanion, aQ as parseDeclaredValue, aR as losesPrecision, T as PRECISION_CODE, aS as parseTimeText, aT as splitListText, a4 as UNKNOWN_ELEMENT_CODE, o as ID_MERGED_CODE, aU as timeTextCompanion, aV as parseDecimalText, ac as capabilities, L as LOSS, ax as joinText, ak as encodeChunks, aG as sanitizeIds, az as pairFolding, al as explicitWeights, aE as resolveExportOptions, ad as checkCapabilities, aW as formatTimeValue, an as formatF32, ao as formatF64, aX as mapDeclaredType, aY as joinListText, aZ as formatTemporal, aq as formatInteger, at as isCanonicalIntegerText, z as MIXED_DIRECTION_CODE, g as DIRECTION_FORCED_CODE, h as DIRECTION_REFUSED_CODE, Y as SINK_OPTION_CODE, P as OPTION_IGNORED_CODE, X as ROLE_TAKEN_CODE, C as COLUMN_RENAMED_CODE, b as BAD_OPTIONS_CODE, B as BAD_DEFAULT_CODE, a3 as UNKNOWN_ATTR_TYPE_CODE, a5 as UNKNOWN_ENCODING_CODE, n as ENCODING_FALLBACK_CODE, s as INVALID_ENCODING_CODE, u as INVALID_UTF8_CODE } from "./chunks/writer-BdMak4_J.js";
 import { GraphFormatError, INVALID_INDEX, MAX_COUNT } from "@graphty/graph-format";
-import { t as tokenizeXml, d as xmlDeclaredEncoding, X as XmlSyntaxError, l as localName, e as isWhitespace, x as xmlIllegalTextNotes, f as escapeXmlText, g as escapeXmlAttribute } from "./chunks/escape-CKied3Ri.js";
+import { t as tokenizeXml, d as xmlDeclaredEncoding, X as XmlSyntaxError, l as localName, e as isWhitespace, x as xmlIllegalTextNotes, f as escapeXmlText, g as escapeXmlAttribute } from "./chunks/escape-DXbOoLKl.js";
 const GEXF_FORMAT = "gexf";
 const GEXF_NAMESPACES = {
   "1.2": { gexf: "http://www.gexf.net/1.2draft", viz: "http://www.gexf.net/1.2draft/viz" },

package/dist/gml.js

@@ -1,6 +1,6 @@
 import { $ as SYNTAX_CODE, ax as joinText, ak as encodeChunks, ad as checkCapabilities, L as LOSS, az as pairFolding, ac as capabilities, aE as resolveExportOptions, a_ as DictHeuristic, aq as formatInteger, aG as sanitizeIds, aJ as countMixedEdges, al as explicitWeights, a$ as DICT_SAMPLE_ROWS, ap as formatGmlReal, X as ROLE_TAKEN_CODE$1, T as PRECISION_CODE$1, k as DUPLICATE_NODE_CODE$1, M as MISSING_ENDPOINT_CODE$1, y as MISSING_ID_CODE$1, A as MULTIPLE_GRAPHS_CODE, K as NO_GRAPH_CODE$1, aF as resolveImportOptions, I as ImportReportBuilder, aD as reportUnusedOptions, aB as readText, a as throwIfAborted, aC as reportSinkOptions, v as IdCoercer, l as DirectionResolver, aL as uniqueColumnName, aK as weightFromValue, aA as parseWeightText, ai as declareResolved, z as MIXED_DIRECTION_CODE, g as DIRECTION_FORCED_CODE, h as DIRECTION_REFUSED_CODE, Y as SINK_OPTION_CODE, P as OPTION_IGNORED_CODE, o as ID_MERGED_CODE, C as COLUMN_RENAMED_CODE, a5 as UNKNOWN_ENCODING_CODE, n as ENCODING_FALLBACK_CODE, s as INVALID_ENCODING_CODE, u as INVALID_UTF8_CODE } from "./chunks/writer-BdMak4_J.js";
 import { GraphFormatError, INVALID_INDEX } from "@graphty/graph-format";
-import { j as decodeGmlString, k as quoteGmlString } from "./chunks/escape-CKied3Ri.js";
+import { j as decodeGmlString, k as quoteGmlString } from "./chunks/escape-DXbOoLKl.js";
 const TOKEN_WORD = 0;
 const TOKEN_INT = 1;
 const TOKEN_REAL = 2;
@@ -43,6 +43,7 @@ class GmlTokens {
    */
   constructor(text, capacity = 1024) {
     this.count = 0;
+    this.onUnknownEntity = null;
     this.text = text;
     this.kind = new Uint8Array(capacity);
     this.start = new Uint32Array(capacity);
@@ -81,7 +82,14 @@ class GmlTokens {
    * @returns the body with character references decoded
    */
   stringOf(i) {
-    return decodeGmlString(this.textOf(i));
+    const text = this.textOf(i);
+    if (text.indexOf("&") < 0) {
+      return text;
+    }
+    const report = this.onUnknownEntity;
+    return decodeGmlString(text, report === null ? void 0 : (entity) => {
+      report(entity, this.line[i]);
+    });
   }
   /**
    * Whether a token is a `[` or `]`.
@@ -1346,6 +1354,7 @@ const REPEATED_KEY_CODE = "E_GML_REPEATED_KEY";
 const ELEMENT_TYPE_CODE = "E_GML_ELEMENT_TYPE";
 const FLAG_TYPE_CODE = "E_GML_FLAG_TYPE";
 const FLAG_VALUE_CODE = "W_GML_FLAG_VALUE";
+const UNKNOWN_ENTITY_CODE = "W_GML_UNKNOWN_ENTITY";
 const PRECISION_CODE = PRECISION_CODE$1;
 const ROLE_TAKEN_CODE = ROLE_TAKEN_CODE$1;
 const ID_DROPPED_CODE = "W_GML_ID_DROPPED";
@@ -1442,6 +1451,15 @@ class GmlImport {
    */
   run(tokens) {
     this.tokens = tokens;
+    tokens.onUnknownEntity = (entity, line) => {
+      this.report.warnOnce(
+        "parse-error",
+        UNKNOWN_ENTITY_CODE,
+        `unknown character entity ${entity} is kept as written`,
+        { line, element: entity },
+        `${UNKNOWN_ENTITY_CODE}:${entity}`
+      );
+    };
     this.scan();
     this.push();
   }
@@ -1534,7 +1552,7 @@ class GmlImport {
           continue;
         }
       } else {
-        if (key === "source" || key === "target") {
+        if (key === "source" || key === "target" || key === "directed") {
           continue;
         }
         if (key === weightFrom) {
@@ -1782,7 +1800,7 @@ class GmlImport {
       this.report.error(
         "validation-error",
         FLAG_TYPE_CODE,
-        `graph flag "${name}" must be the integer 0 or 1, found ${describeValue(t, v)}`,
+        `flag "${name}" must be the integer 0 or 1, found ${describeValue(t, v)}`,
         { line: t.line[v], element: name }
       );
       return null;
@@ -1792,7 +1810,7 @@ class GmlImport {
       this.report.warning(
         "validation-error",
         FLAG_VALUE_CODE,
-        `graph flag "${name}" is ${n}; read as ${n !== 0 ? "1" : "0"}`,
+        `flag "${name}" is ${n}; read as ${n !== 0 ? "1" : "0"}`,
         { line: t.line[v], element: name }
       );
     }
@@ -1990,12 +2008,15 @@ class GmlImport {
       let sourceTok = -1;
       let targetTok = -1;
       let weightTok = -1;
+      let directedTok = -1;
       for (let p = open + 1; p < close; p = t.nextPair(p)) {
         const key = t.textOf(p);
         if (key === "source") {
           sourceTok = this.structuralToken(sourceTok, p, "source");
         } else if (key === "target") {
           targetTok = this.structuralToken(targetTok, p, "target");
+        } else if (key === "directed") {
+          directedTok = this.structuralToken(directedTok, p, "directed");
         } else if (key === options.weightFrom) {
           weightTok = p + 1;
         }
@@ -2011,13 +2032,11 @@ class GmlImport {
       const before = sink.edgeCount;
       const sourceNew = sink.indexOf(source) === INVALID_INDEX;
       const targetNew = source !== target && sink.indexOf(target) === INVALID_INDEX;
-      edge = this.requireResolver().addEdge(
-        source,
-        target,
-        this.headerDirected ? "directed" : "undirected",
-        weight,
-        { line, element }
-      );
+      const directed = this.readFlag(directedTok, "directed") ?? this.headerDirected;
+      edge = this.requireResolver().addEdge(source, target, directed ? "directed" : "undirected", weight, {
+        line,
+        element
+      });
       report.counts.edges += sink.edgeCount - before;
       report.counts.nodes += (sourceNew ? 1 : 0) + (targetNew ? 1 : 0);
     } catch (err) {
@@ -2029,7 +2048,7 @@ class GmlImport {
     try {
       for (let p = open + 1; p < close; p = t.nextPair(p)) {
         const key = t.textOf(p);
-        if (key === "source" || key === "target" || key === options.weightFrom) {
+        if (key === "source" || key === "target" || key === "directed" || key === options.weightFrom) {
           continue;
         }
         const plan = this.edgePlans.get(key);
@@ -2637,6 +2656,8 @@ const GML_ISSUE = Object.freeze({
   FLAG_TYPE: FLAG_TYPE_CODE,
   /** A `directed` / `multigraph` flag outside 0 / 1, or repeated. */
   FLAG_VALUE: FLAG_VALUE_CODE,
+  /** A named entity in a string that no table decodes; kept as written. */
+  UNKNOWN_ENTITY: UNKNOWN_ENTITY_CODE,
   /** An integer beyond 2^53 rounded to f64. */
   PRECISION: PRECISION_CODE,
   /** A column renamed `<name>#<key>` because the sink held the name with another shape. */