@graphty/graph-io 0.3.16 → 0.3.18

package/dist/src/formats/obo/syntax.js.map

@@ -0,0 +1 @@
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package/dist/src/index.d.ts

@@ -7,9 +7,9 @@
  * coercion, the capability check and the loss / issue codes callers branch on). Named exports
  * only; no default export.
  */
-export { type CommonExportOptions, type CommonImportOptions, type ExportCapabilities, type GraphExporter, type GraphImporter, ImportError, type ImportInput, type ImportIssue, type ImportReport, type IssueCategory, type LossNote, } from "./types.js";
+export { type CommonExportOptions, type CommonImportOptions, type ExportCapabilities, type GraphChoiceOptions, type GraphExporter, type GraphImporter, type GraphListing, ImportError, type ImportInput, type ImportIssue, type ImportReport, type IssueCategory, type LossNote, } from "./types.js";
 export { ChildrenCsr, childrenCsr, childrenFromColumn, type ChildrenOptions, type ContainmentRole, type DepthFirstOrder, } from "./children.js";
-export { type BuilderSeed, checkExport, createRegistry, exportGraph, type ExportGraphOptions, exportGraphToString, FormatRegistry, importAllGraphs, importGraph, type ImportGraphOptions, type ImportGraphResult, registry, sniff, UNKNOWN_FORMAT_CODE, } from "./registry.js";
+export { type BuilderSeed, checkExport, createRegistry, exportGraph, type ExportGraphOptions, exportGraphToString, FormatRegistry, importAllGraphs, importGraph, type ImportGraphOptions, type ImportGraphResult, listGraphs, registry, sniff, UNKNOWN_FORMAT_CODE, } from "./registry.js";
 export { extensionOf, GRAPH_FORMATS, type GraphFormatName, headBytes, normalizeMimeType, rankFormats, SNIFF_HEAD_BYTES, sniffFormat, type SniffHints, sniffJsonDialectHead, type SniffResult, } from "./sniff.js";
 export { CSV_CAPABILITIES, CSV_ISSUE, CSV_LOSS, type CsvColumnRef, csvExporter, type CsvExportOptions, csvImporter, type CsvImportOptions, } from "./formats/csv/index.js";
 export { DOT_ISSUE, DOT_LOSS, dotExporter, type DotExportOptions, dotImporter, type DotImportOptions, } from "./formats/dot/index.js";
@@ -18,6 +18,7 @@ export { GML_ISSUE, GML_LOSS, gmlExporter, type GmlExportOptions, gmlImporter, t
 export { GRAPHML_ISSUE, GRAPHML_LOSS, graphmlExporter, type GraphmlExportOptions, graphmlImporter, type GraphmlImportOptions, } from "./formats/graphml/index.js";
 export { dialectCapabilities, JSON_DIALECTS, JSON_ISSUE, JSON_LOSS, jsonCapabilities, type JsonDialect, jsonExporter, type JsonExportOptions, type JsonImportDialect, jsonImporter, type JsonImportOptions, type JsonShapeMeta, } from "./formats/json/index.js";
 export { ID_SPACE_COLUMN, LABELS_COLUMN, NEO4J_CAPABILITIES, NEO4J_ISSUE, NEO4J_LOSS, neo4jExporter, type Neo4jExportOptions, neo4jImporter, type Neo4jImportOptions, ORIGINAL_ID_COLUMN, TYPE_COLUMN, } from "./formats/neo4j/index.js";
+export { OBO_ISSUE, oboImporter, type OboImportOptions } from "./formats/obo/index.js";
 export { PAJEK_ISSUE, PAJEK_LOSS, pajekExporter, type PajekExportOptions, pajekImporter, type PajekImportOptions, } from "./formats/pajek/index.js";
 export { BAD_DEFAULT_CODE, BAD_OPTIONS_CODE, declareCompanion, declareResolved, PRECISION_CODE, RENAMED_CODE, type ResolvedDeclaration, ROLE_TAKEN_CODE, UNKNOWN_TYPE_CODE, } from "./common/attributes.js";
 export * from "./common/codes.js";
@@ -25,8 +26,8 @@ export { DIRECTED_COLUMN, DIRECTION_FORCED_CODE, DIRECTION_REFUSED_CODE, Directi
 export { capabilities, checkCapabilities, type CheckExtras, type IdCharset, isNmtoken, LOSS, mangleNmtoken, NO_CAPABILITIES, type SanitizedIds, sanitizeIds, } from "./common/export.js";
 export { formatDecimal, formatF32, formatF64, formatGmlReal, formatInteger } from "./common/format.js";
 export { canonicalId, coerceId, coerceIdText, ID_MERGED_CODE, IdCoercer, isCanonicalIntegerText, } from "./common/ids.js";
-export { inputLength, INVALID_UTF8_CODE, isImportInput, LineReader, type ReadOptions, readText, textChunks, throwIfAborted, } from "./common/input.js";
-export { DEFAULT_ERROR_LIMIT, type ImportFormatDefaults, reportSinkOptions, reportUnusedOptions, type ResolvedExportOptions, type ResolvedImportOptions, resolveExportOptions, resolveImportOptions, SINK_OPTION_CODE, } from "./common/options.js";
+export { decodeEntryName, inputLength, INVALID_UTF8_CODE, isImportInput, LineReader, type ReadOptions, readText, textChunks, throwIfAborted, } from "./common/input.js";
+export { chooseGraph, DEFAULT_ERROR_LIMIT, type ImportFormatDefaults, reportSinkOptions, reportUnusedOptions, type ResolvedExportOptions, type ResolvedImportOptions, resolveExportOptions, resolveImportOptions, SINK_OPTION_CODE, } from "./common/options.js";
 export { ImportReportBuilder, isAbortError, type IssueLocation, type MutableCounts, PARSE_ERROR_CODE, } from "./common/report.js";
 export { inferTextDtype, isNumericText, parseTextCell, TextCellWriter, type TextDtype, WIDENING_UNSUPPORTED_CODE, } from "./common/text.js";
 export { type ExplicitWeights, explicitWeights, isWeightField, parseWeightText } from "./common/weights.js";

package/dist/src/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAGH,OAAO,EACH,KAAK,mBAAmB,EACxB,KAAK,mBAAmB,EACxB,KAAK,kBAAkB,EACvB,KAAK,kBAAkB,EACvB,KAAK,aAAa,EAClB,KAAK,aAAa,EAClB,KAAK,YAAY,EACjB,WAAW,EACX,KAAK,WAAW,EAChB,KAAK,WAAW,EAChB,KAAK,YAAY,EACjB,KAAK,aAAa,EAClB,KAAK,QAAQ,GAChB,MAAM,YAAY,CAAC;AAGpB,OAAO,EACH,WAAW,EACX,WAAW,EACX,kBAAkB,EAClB,KAAK,eAAe,EACpB,KAAK,eAAe,EACpB,KAAK,eAAe,GACvB,MAAM,eAAe,CAAC;AACvB,OAAO,EACH,KAAK,WAAW,EAChB,WAAW,EACX,cAAc,EACd,WAAW,EACX,KAAK,kBAAkB,EACvB,mBAAmB,EACnB,cAAc,EACd,eAAe,EACf,WAAW,EACX,KAAK,kBAAkB,EACvB,KAAK,iBAAiB,EACtB,UAAU,EACV,QAAQ,EACR,KAAK,EACL,mBAAmB,GACtB,MAAM,eAAe,CAAC;AACvB,OAAO,EACH,WAAW,EACX,aAAa,EACb,KAAK,eAAe,EACpB,SAAS,EACT,iBAAiB,EACjB,WAAW,EACX,gBAAgB,EAChB,WAAW,EACX,KAAK,UAAU,EACf,oBAAoB,EACpB,KAAK,WAAW,GACnB,MAAM,YAAY,CAAC;AAGpB,OAAO,EACH,gBAAgB,EAChB,SAAS,EACT,QAAQ,EACR,KAAK,YAAY,EACjB,WAAW,EACX,KAAK,gBAAgB,EACrB,WAAW,EACX,KAAK,gBAAgB,GACxB,MAAM,wBAAwB,CAAC;AAChC,OAAO,EACH,SAAS,EACT,QAAQ,EACR,WAAW,EACX,KAAK,gBAAgB,EACrB,WAAW,EACX,KAAK,gBAAgB,GACxB,MAAM,wBAAwB,CAAC;AAChC,OAAO,EACH,qBAAqB,EACrB,UAAU,EACV,SAAS,EACT,YAAY,EACZ,KAAK,iBAAiB,EACtB,YAAY,EACZ,KAAK,iBAAiB,EACtB,KAAK,WAAW,GACnB,MAAM,yBAAyB,CAAC;AACjC,OAAO,EACH,SAAS,EACT,QAAQ,EACR,WAAW,EACX,KAAK,gBAAgB,EACrB,WAAW,EACX,KAAK,gBAAgB,GACxB,MAAM,wBAAwB,CAAC;AAChC,OAAO,EACH,aAAa,EACb,YAAY,EACZ,eAAe,EACf,KAAK,oBAAoB,EACzB,eAAe,EACf,KAAK,oBAAoB,GAC5B,MAAM,4BAA4B,CAAC;AACpC,OAAO,EACH,mBAAmB,EACnB,aAAa,EACb,UAAU,EACV,SAAS,EACT,gBAAgB,EAChB,KAAK,WAAW,EAChB,YAAY,EACZ,KAAK,iBAAiB,EACtB,KAAK,iBAAiB,EACtB,YAAY,EACZ,KAAK,iBAAiB,EACtB,KAAK,aAAa,GACrB,MAAM,yBAAyB,CAAC;AACjC,OAAO,EACH,eAAe,EACf,aAAa,EACb,kBAAkB,EAClB,WAAW,EACX,UAAU,EACV,aAAa,EACb,KAAK,kBAAkB,EACvB,aAAa,EACb,KAAK,kBAAkB,EACvB,kBAAkB,EAClB,WAAW,GACd,MAAM,0BAA0B,CAAC;AAClC,OAAO,EAAE,SAAS,EAAE,WAAW,EAAE,KAAK,gBAAgB,EAAE,MAAM,wBAAwB,CAAC;AACvF,OAAO,EACH,WAAW,EACX,UAAU,EACV,aAAa,EACb,KAAK,kBAAkB,EACvB,aAAa,EACb,KAAK,kBAAkB,GAC1B,MAAM,0BAA0B,CAAC;AAGlC,OAAO,EACH,gBAAgB,EAChB,gBAAgB,EAChB,gBAAgB,EAChB,eAAe,EACf,cAAc,EACd,YAAY,EACZ,KAAK,mBAAmB,EACxB,eAAe,EACf,iBAAiB,GACpB,MAAM,wBAAwB,CAAC;AAChC,cAAc,mBAAmB,CAAC;AAClC,OAAO,EACH,eAAe,EACf,qBAAqB,EACrB,sBAAsB,EACtB,iBAAiB,EACjB,KAAK,QAAQ,EACb,KAAK,YAAY,EACjB,oBAAoB,EACpB,aAAa,EACb,WAAW,EACX,KAAK,WAAW,EAChB,WAAW,EACX,KAAK,kBAAkB,GAC1B,MAAM,uBAAuB,CAAC;AAC/B,OAAO,EACH,YAAY,EACZ,iBAAiB,EACjB,KAAK,WAAW,EAChB,KAAK,SAAS,EACd,SAAS,EACT,IAAI,EACJ,aAAa,EACb,eAAe,EACf,KAAK,YAAY,EACjB,WAAW,GACd,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EAAE,aAAa,EAAE,SAAS,EAAE,SAAS,EAAE,aAAa,EAAE,aAAa,EAAE,MAAM,oBAAoB,CAAC;AACvG,OAAO,EACH,WAAW,EACX,QAAQ,EACR,YAAY,EACZ,cAAc,EACd,SAAS,EACT,sBAAsB,GACzB,MAAM,iBAAiB,CAAC;AACzB,OAAO,EACH,eAAe,EACf,WAAW,EACX,iBAAiB,EACjB,aAAa,EACb,UAAU,EACV,KAAK,WAAW,EAChB,QAAQ,EACR,UAAU,EACV,cAAc,GACjB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EACH,WAAW,EACX,mBAAmB,EACnB,KAAK,oBAAoB,EACzB,iBAAiB,EACjB,mBAAmB,EACnB,KAAK,qBAAqB,EAC1B,KAAK,qBAAqB,EAC1B,oBAAoB,EACpB,oBAAoB,EACpB,gBAAgB,GACnB,MAAM,qBAAqB,CAAC;AAC7B,OAAO,EACH,mBAAmB,EACnB,YAAY,EACZ,KAAK,aAAa,EAClB,KAAK,aAAa,EAClB,gBAAgB,GACnB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EACH,cAAc,EACd,aAAa,EACb,aAAa,EACb,cAAc,EACd,KAAK,SAAS,EACd,yBAAyB,GAC5B,MAAM,kBAAkB,CAAC;AAC1B,OAAO,EAAE,KAAK,eAAe,EAAE,eAAe,EAAE,aAAa,EAAE,eAAe,EAAE,MAAM,qBAAqB,CAAC;AAC5G,OAAO,EACH,YAAY,EACZ,YAAY,EACZ,mBAAmB,EACnB,YAAY,EACZ,QAAQ,EACR,KAAK,SAAS,EACd,gBAAgB,GACnB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EACH,iBAAiB,EACjB,WAAW,EACX,KAAK,UAAU,EACf,mBAAmB,EACnB,cAAc,EACd,YAAY,GACf,MAAM,iBAAiB,CAAC"}

package/dist/src/index.js

@@ -11,7 +11,7 @@
 export { ImportError, } from "./types.js";
 // ============================================================ registry, sniffing, children (8.2)
 export { ChildrenCsr, childrenCsr, childrenFromColumn, } from "./children.js";
-export { checkExport, createRegistry, exportGraph, exportGraphToString, FormatRegistry, importAllGraphs, importGraph, registry, sniff, UNKNOWN_FORMAT_CODE, } from "./registry.js";
+export { checkExport, createRegistry, exportGraph, exportGraphToString, FormatRegistry, importAllGraphs, importGraph, listGraphs, registry, sniff, UNKNOWN_FORMAT_CODE, } from "./registry.js";
 export { extensionOf, GRAPH_FORMATS, headBytes, normalizeMimeType, rankFormats, SNIFF_HEAD_BYTES, sniffFormat, sniffJsonDialectHead, } from "./sniff.js";
 // ============================================================ formats (8.4, 8.5)
 export { CSV_CAPABILITIES, CSV_ISSUE, CSV_LOSS, csvExporter, csvImporter, } from "./formats/csv/index.js";
@@ -21,6 +21,7 @@ export { GML_ISSUE, GML_LOSS, gmlExporter, gmlImporter, } from "./formats/gml/in
 export { GRAPHML_ISSUE, GRAPHML_LOSS, graphmlExporter, graphmlImporter, } from "./formats/graphml/index.js";
 export { dialectCapabilities, JSON_DIALECTS, JSON_ISSUE, JSON_LOSS, jsonCapabilities, jsonExporter, jsonImporter, } from "./formats/json/index.js";
 export { ID_SPACE_COLUMN, LABELS_COLUMN, NEO4J_CAPABILITIES, NEO4J_ISSUE, NEO4J_LOSS, neo4jExporter, neo4jImporter, ORIGINAL_ID_COLUMN, TYPE_COLUMN, } from "./formats/neo4j/index.js";
+export { OBO_ISSUE, oboImporter } from "./formats/obo/index.js";
 export { PAJEK_ISSUE, PAJEK_LOSS, pajekExporter, pajekImporter, } from "./formats/pajek/index.js";
 // ============================================================ shared helpers for plugin authors (8.4, 8.5, 8.6)
 export { BAD_DEFAULT_CODE, BAD_OPTIONS_CODE, declareCompanion, declareResolved, PRECISION_CODE, RENAMED_CODE, ROLE_TAKEN_CODE, UNKNOWN_TYPE_CODE, } from "./common/attributes.js";
@@ -29,8 +30,8 @@ export { DIRECTED_COLUMN, DIRECTION_FORCED_CODE, DIRECTION_REFUSED_CODE, Directi
 export { capabilities, checkCapabilities, isNmtoken, LOSS, mangleNmtoken, NO_CAPABILITIES, sanitizeIds, } from "./common/export.js";
 export { formatDecimal, formatF32, formatF64, formatGmlReal, formatInteger } from "./common/format.js";
 export { canonicalId, coerceId, coerceIdText, ID_MERGED_CODE, IdCoercer, isCanonicalIntegerText, } from "./common/ids.js";
-export { inputLength, INVALID_UTF8_CODE, isImportInput, LineReader, readText, textChunks, throwIfAborted, } from "./common/input.js";
-export { DEFAULT_ERROR_LIMIT, reportSinkOptions, reportUnusedOptions, resolveExportOptions, resolveImportOptions, SINK_OPTION_CODE, } from "./common/options.js";
+export { decodeEntryName, inputLength, INVALID_UTF8_CODE, isImportInput, LineReader, readText, textChunks, throwIfAborted, } from "./common/input.js";
+export { chooseGraph, DEFAULT_ERROR_LIMIT, reportSinkOptions, reportUnusedOptions, resolveExportOptions, resolveImportOptions, SINK_OPTION_CODE, } from "./common/options.js";
 export { ImportReportBuilder, isAbortError, PARSE_ERROR_CODE, } from "./common/report.js";
 export { inferTextDtype, isNumericText, parseTextCell, TextCellWriter, WIDENING_UNSUPPORTED_CODE, } from "./common/text.js";
 export { explicitWeights, isWeightField, parseWeightText } from "./common/weights.js";

package/dist/src/index.js.map

@@ -1 +1 @@
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package/dist/src/registry.d.ts

@@ -8,7 +8,7 @@
  */
 import { type FreezeOptions, type FreezeReport, type GraphBuilderOptions, type GraphSnapshot } from "@graphty/graph-format";
 import { type SniffHints, type SniffResult } from "./sniff.js";
-import { type CommonExportOptions, type CommonImportOptions, type GraphExporter, type GraphImporter, type ImportInput, type ImportReport, type LossNote } from "./types.js";
+import { type CommonExportOptions, type CommonImportOptions, type GraphChoiceOptions, type GraphExporter, type GraphImporter, type GraphListing, type ImportInput, type ImportReport, type LossNote } from "./types.js";
 /** The issue code of an input whose format no registered importer recognises. */
 export declare const UNKNOWN_FORMAT_CODE = "E_UNKNOWN_FORMAT";
 /** The builder options importGraph() accepts beyond the ones the common import options seed. */
@@ -17,9 +17,10 @@ export type BuilderSeed = Omit<GraphBuilderOptions, "directed" | "addMissingNode
  * The options of importGraph(): the common import options (which also seed the registry's
  * builder, design section 8.4), the format choice and the hints sniffing uses, the builder and
  * freeze options, and any format-specific option (`delimiter`, `dialect`, ...) passed through to
- * the importer unchanged.
+ * the importer unchanged. `graphIndex` / `graphName` choose one graph of an input that holds
+ * several, for the formats that list their graphs.
  */
-export interface ImportGraphOptions extends CommonImportOptions {
+export interface ImportGraphOptions extends CommonImportOptions, GraphChoiceOptions {
     /** The format name, or "auto" (default) to sniff it from the filename, MIME type and content. */
     readonly format?: string | undefined;
     /** The file name or path the input came from, a hint for sniffing. */
@@ -146,6 +147,16 @@ export declare class FormatRegistry {
      * @returns one result per graph, in document order
      */
     importAllGraphs(input: ImportInput, options?: ImportGraphOptions): Promise<ImportGraphResult[]>;
+    /**
+     * The graphs of an input that can hold several, without importing them (a Cytoscape session's
+     * networks, a JGF `graphs` array), so a caller can offer a choice and then pass `graphIndex`
+     * or `graphName` to importGraph(). The format is named or sniffed as by importGraph().
+     * @param input - the text, bytes, stream or chunks to read
+     * @param options - the format, hints, common and format-specific import options
+     * @returns one listing per graph, in document order; null when the format's importer does not
+     * list its graphs (importGraph() then reads the first)
+     */
+    listGraphs(input: ImportInput, options?: ImportGraphOptions): Promise<readonly GraphListing[] | null>;
     /**
      * The importer for an input: the named format, or the sniffed one.
      * @param input - the input
@@ -200,6 +211,13 @@ export declare function importGraph(input: ImportInput, options?: ImportGraphOpt
  * @returns one result per graph, in document order
  */
 export declare function importAllGraphs(input: ImportInput, options?: ImportGraphOptions): Promise<ImportGraphResult[]>;
+/**
+ * The graphs of an input that can hold several, through the default registry.
+ * @param input - the text, bytes, stream or chunks to read
+ * @param options - the format, hints, common and format-specific import options
+ * @returns one listing per graph, in document order; null when the format does not list its graphs
+ */
+export declare function listGraphs(input: ImportInput, options?: ImportGraphOptions): Promise<readonly GraphListing[] | null>;
 /**
  * Write a snapshot in a format through the default registry, as UTF-8 chunks.
  * @param snapshot - the snapshot

package/dist/src/registry.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"registry.d.ts","sourceRoot":"","sources":["../../src/registry.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EACH,KAAK,aAAa,EAClB,KAAK,YAAY,EAEjB,KAAK,mBAAmB,EAExB,KAAK,aAAa,EACrB,MAAM,uBAAuB,CAAC;AAa/B,OAAO,EAAiC,KAAK,UAAU,EAAE,KAAK,WAAW,EAAE,MAAM,YAAY,CAAC;AAC9F,OAAO,EACH,KAAK,mBAAmB,EACxB,KAAK,mBAAmB,EACxB,KAAK,kBAAkB,EACvB,KAAK,aAAa,EAClB,KAAK,aAAa,EAClB,KAAK,YAAY,EACjB,KAAK,WAAW,EAChB,KAAK,YAAY,EACjB,KAAK,QAAQ,EAChB,MAAM,YAAY,CAAC;AAEpB,iFAAiF;AACjF,eAAO,MAAM,mBAAmB,qBAAqB,CAAC;AAEtD,gGAAgG;AAChG,MAAM,MAAM,WAAW,GAAG,IAAI,CAC1B,mBAAmB,EACnB,UAAU,GAAG,iBAAiB,GAAG,gBAAgB,GAAG,WAAW,GAAG,aAAa,CAClF,CAAC;AAEF;;;;;;GAMG;AACH,MAAM,WAAW,kBAAmB,SAAQ,mBAAmB,EAAE,kBAAkB;IAC/E,iGAAiG;IACjG,QAAQ,CAAC,MAAM,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IACrC,sEAAsE;IACtE,QAAQ,CAAC,QAAQ,CAAC,EAAE,MAAM,GAAG,IAAI,GAAG,SAAS,CAAC;IAC9C,kEAAkE;IAClE,QAAQ,CAAC,QAAQ,CAAC,EAAE,MAAM,GAAG,IAAI,GAAG,SAAS,CAAC;IAC9C,0FAA0F;IAC1F,QAAQ,CAAC,OAAO,CAAC,EAAE,WAAW,GAAG,SAAS,CAAC;IAC3C,qDAAqD;IACrD,QAAQ,CAAC,MAAM,CAAC,EAAE,aAAa,GAAG,SAAS,CAAC;IAC5C,mEAAmE;IACnE,QAAQ,EAAE,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC;CAC5C;AAED,uDAAuD;AACvD,MAAM,WAAW,iBAAiB;IAC9B,wCAAwC;IACxC,QAAQ,CAAC,MAAM,EAAE,MAAM,CAAC;IACxB,mFAAmF;IACnF,QAAQ,CAAC,KAAK,EAAE,WAAW,GAAG,IAAI,CAAC;IACnC,2BAA2B;IAC3B,QAAQ,CAAC,QAAQ,EAAE,aAAa,CAAC;IACjC,6BAA6B;IAC7B,QAAQ,CAAC,MAAM,EAAE,YAAY,CAAC;IAC9B,8CAA8C;IAC9C,QAAQ,CAAC,MAAM,EAAE,YAAY,CAAC;CACjC;AAED,+GAA+G;AAC/G,MAAM,WAAW,kBAAmB,SAAQ,mBAAmB;IAC3D,mEAAmE;IACnE,QAAQ,EAAE,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC;CAC5C;AAKD;;;;GAIG;AACH,qBAAa,cAAc;IACvB,OAAO,CAAC,QAAQ,CAAC,WAAW,CAAoC;IAEhE,OAAO,CAAC,QAAQ,CAAC,WAAW,CAAoC;IAEhE;;;;;OAKG;IACH,gBAAgB,CAAC,QAAQ,EAAE,aAAa,GAAG,IAAI;IAK/C;;;;OAIG;IACH,gBAAgB,CAAC,QAAQ,EAAE,aAAa,GAAG,IAAI;IAK/C;;;;OAIG;IACH,QAAQ,CAAC,MAAM,EAAE,MAAM,GAAG,aAAa;IAQvC;;;;OAIG;IACH,QAAQ,CAAC,MAAM,EAAE,MAAM,GAAG,aAAa;IAQvC;;;;OAIG;IACH,WAAW,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO;IAIpC;;;;OAIG;IACH,WAAW,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO;IAIpC;;;OAGG;IACH,SAAS,IAAI,SAAS,aAAa,EAAE;IAIrC;;;OAGG;IACH,SAAS,IAAI,SAAS,aAAa,EAAE;IAIrC;;;OAGG;IACH,OAAO,IAAI,SAAS,MAAM,EAAE;IAI5B;;;;;OAKG;IACH,QAAQ,CAAC,KAAK,EAAE,UAAU,GAAG,SAAS,WAAW,EAAE;IAInD;;;;OAIG;IACH,KAAK,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,GAAG,IAAI;IAK5C;;;;;;;;;;OAUG;IACG,WAAW,CAAC,KAAK,EAAE,WAAW,EAAE,OAAO,GAAE,kBAAuB,GAAG,OAAO,CAAC,iBAAiB,CAAC;IAanG;;;;;;;;OAQG;IACG,eAAe,CAAC,KAAK,EAAE,WAAW,EAAE,OAAO,GAAE,kBAAuB,GAAG,OAAO,CAAC,iBAAiB,EAAE,CAAC;IA2BzG;;;;;;;;OAQG;IACG,UAAU,CAAC,KAAK,EAAE,WAAW,EAAE,OAAO,GAAE,kBAAuB,GAAG,OAAO,CAAC,SAAS,YAAY,EAAE,GAAG,IAAI,CAAC;IAW/G;;;;;OAKG;YACW,MAAM;IAmBpB;;;;;;OAMG;IACH,WAAW,CAAC,QAAQ,EAAE,aAAa,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,kBAAkB,GAAG,aAAa,CAAC,UAAU,CAAC;IAI7G;;;;;;OAMG;IACG,mBAAmB,CAAC,QAAQ,EAAE,aAAa,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,kBAAkB,GAAG,OAAO,CAAC,MAAM,CAAC;IAIjH;;;;;;OAMG;IACH,WAAW,CAAC,QAAQ,EAAE,aAAa,EAAE,MAAM,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,kBAAkB,GAAG,SAAS,QAAQ,EAAE;CAG1G;AAED;;;GAGG;AACH,wBAAgB,cAAc,IAAI,cAAc,CAmB/C;AAED,mDAAmD;AACnD,eAAO,MAAM,QAAQ,EAAE,cAAiC,CAAC;AAEzD;;;;;;GAMG;AACH,wBAAgB,WAAW,CAAC,KAAK,EAAE,WAAW,EAAE,OAAO,CAAC,EAAE,kBAAkB,GAAG,OAAO,CAAC,iBAAiB,CAAC,CAExG;AAED;;;;;GAKG;AACH,wBAAgB,eAAe,CAAC,KAAK,EAAE,WAAW,EAAE,OAAO,CAAC,EAAE,kBAAkB,GAAG,OAAO,CAAC,iBAAiB,EAAE,CAAC,CAE9G;AAED;;;;;GAKG;AACH,wBAAgB,UAAU,CAAC,KAAK,EAAE,WAAW,EAAE,OAAO,CAAC,EAAE,kBAAkB,GAAG,OAAO,CAAC,SAAS,YAAY,EAAE,GAAG,IAAI,CAAC,CAEpH;AAED;;;;;;GAMG;AACH,wBAAgB,WAAW,CACvB,QAAQ,EAAE,aAAa,EACvB,MAAM,EAAE,MAAM,EACd,OAAO,CAAC,EAAE,kBAAkB,GAC7B,aAAa,CAAC,UAAU,CAAC,CAE3B;AAED;;;;;;GAMG;AACH,wBAAsB,mBAAmB,CACrC,QAAQ,EAAE,aAAa,EACvB,MAAM,EAAE,MAAM,EACd,OAAO,CAAC,EAAE,kBAAkB,GAC7B,OAAO,CAAC,MAAM,CAAC,CAEjB;AAED;;;;;;GAMG;AACH,wBAAgB,WAAW,CACvB,QAAQ,EAAE,aAAa,EACvB,MAAM,EAAE,MAAM,EACd,OAAO,CAAC,EAAE,kBAAkB,GAC7B,SAAS,QAAQ,EAAE,CAErB;AAED;;;;GAIG;AACH,wBAAgB,KAAK,CAAC,KAAK,EAAE,UAAU,GAAG,WAAW,GAAG,IAAI,CAE3D"}

package/dist/src/registry.js

@@ -16,6 +16,7 @@ import { gmlExporter, gmlImporter } from "./formats/gml/index.js";
 import { graphmlExporter, graphmlImporter } from "./formats/graphml/index.js";
 import { jsonExporter, jsonImporter } from "./formats/json/index.js";
 import { neo4jExporter, neo4jImporter } from "./formats/neo4j/index.js";
+import { oboImporter } from "./formats/obo/index.js";
 import { pajekExporter, pajekImporter } from "./formats/pajek/index.js";
 import { rankFormats, SNIFF_HEAD_BYTES } from "./sniff.js";
 /** The issue code of an input whose format no registered importer recognises. */
@@ -187,6 +188,26 @@ export class FormatRegistry {
         }
         return reports.map((report, i) => result(chosen, builders[i], report, options));
     }
+    /**
+     * The graphs of an input that can hold several, without importing them (a Cytoscape session's
+     * networks, a JGF `graphs` array), so a caller can offer a choice and then pass `graphIndex`
+     * or `graphName` to importGraph(). The format is named or sniffed as by importGraph().
+     * @param input - the text, bytes, stream or chunks to read
+     * @param options - the format, hints, common and format-specific import options
+     * @returns one listing per graph, in document order; null when the format's importer does not
+     * list its graphs (importGraph() then reads the first)
+     */
+    async listGraphs(input, options = {}) {
+        const chosen = await this.choose(input, options);
+        try {
+            return chosen.importer.listGraphs === undefined
+                ? null
+                : await chosen.importer.listGraphs(chosen.source, importerOptions(options));
+        }
+        finally {
+            await chosen.peeked?.close();
+        }
+    }
     /**
      * The importer for an input: the named format, or the sniffed one.
      * @param input - the input
@@ -258,7 +279,8 @@ export function createRegistry() {
         .registerImporter(pajekImporter)
         .registerExporter(pajekExporter)
         .registerImporter(neo4jImporter)
-        .registerExporter(neo4jExporter);
+        .registerExporter(neo4jExporter)
+        .registerImporter(oboImporter);
 }
 /** The default registry: every built-in format. */
 export const registry = createRegistry();
@@ -281,6 +303,15 @@ export function importGraph(input, options) {
 export function importAllGraphs(input, options) {
     return registry.importAllGraphs(input, options);
 }
+/**
+ * The graphs of an input that can hold several, through the default registry.
+ * @param input - the text, bytes, stream or chunks to read
+ * @param options - the format, hints, common and format-specific import options
+ * @returns one listing per graph, in document order; null when the format does not list its graphs
+ */
+export function listGraphs(input, options) {
+    return registry.listGraphs(input, options);
+}
 /**
  * Write a snapshot in a format through the default registry, as UTF-8 chunks.
  * @param snapshot - the snapshot

package/dist/src/registry.js.map

@@ -1 +1 @@
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package/dist/src/sniff.d.ts

@@ -23,7 +23,7 @@
 import { type JsonImportDialect } from "./formats/json/dialect.js";
 import { type GraphImporter } from "./types.js";
 /** The format names of the eight built-in importers and exporters. */
-export type GraphFormatName = "gexf" | "graphml" | "gml" | "dot" | "pajek" | "csv" | "json" | "neo4j";
+export type GraphFormatName = "gexf" | "graphml" | "gml" | "dot" | "pajek" | "csv" | "json" | "neo4j" | "obo";
 /**
  * The built-in format names in the default registry's order, which is also the tie-break order of
  * sniffing: the more common format wins an extension two formats claim (`.xml` GraphML before GEXF,

package/dist/src/sniff.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"sniff.d.ts","sourceRoot":"","sources":["../../src/sniff.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;GAqBG;AAEH,OAAO,EAAE,KAAK,iBAAiB,EAAoB,MAAM,2BAA2B,CAAC;AACrF,OAAO,EAAE,KAAK,aAAa,EAAE,MAAM,YAAY,CAAC;AAEhD,sEAAsE;AACtE,MAAM,MAAM,eAAe,GAAG,MAAM,GAAG,SAAS,GAAG,KAAK,GAAG,KAAK,GAAG,OAAO,GAAG,KAAK,GAAG,MAAM,GAAG,OAAO,CAAC;AAEtG;;;;GAIG;AACH,eAAO,MAAM,aAAa,EAAE,SAAS,eAAe,EASlD,CAAC;AAEH,8GAA8G;AAC9G,eAAO,MAAM,gBAAgB,OAAO,CAAC;AAErC,sDAAsD;AACtD,MAAM,WAAW,UAAU;IACvB,uDAAuD;IACvD,QAAQ,CAAC,QAAQ,CAAC,EAAE,MAAM,GAAG,IAAI,GAAG,SAAS,CAAC;IAC9C,2EAA2E;IAC3E,QAAQ,CAAC,QAAQ,CAAC,EAAE,MAAM,GAAG,IAAI,GAAG,SAAS,CAAC;IAC9C,sDAAsD;IACtD,QAAQ,CAAC,IAAI,CAAC,EAAE,UAAU,GAAG,MAAM,GAAG,IAAI,GAAG,SAAS,CAAC;CAC1D;AAED,uCAAuC;AACvC,MAAM,WAAW,WAAW;IACxB,kCAAkC;IAClC,QAAQ,CAAC,MAAM,EAAE,MAAM,CAAC;IACxB,sFAAsF;IACtF,QAAQ,CAAC,UAAU,EAAE,MAAM,CAAC;IAC5B,+FAA+F;IAC/F,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAC;IACzB,mEAAmE;IACnE,QAAQ,CAAC,SAAS,EAAE,OAAO,CAAC;IAC5B,wDAAwD;IACxD,QAAQ,CAAC,QAAQ,EAAE,OAAO,CAAC;IAC3B,+GAA+G;IAC/G,QAAQ,CAAC,OAAO,EAAE,iBAAiB,GAAG,IAAI,CAAC;CAC9C;AAED;;;;GAIG;AACH,wBAAgB,WAAW,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CAO3D;AAED;;;;GAIG;AACH,wBAAgB,iBAAiB,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,CAG1D;AAED;;;;;GAKG;AACH,wBAAgB,SAAS,CAAC,IAAI,EAAE,UAAU,GAAG,MAAM,GAAG,UAAU,CAU/D;AAED;;;;;;;GAOG;AACH,wBAAgB,WAAW,CAAC,KAAK,EAAE,UAAU,EAAE,SAAS,EAAE,QAAQ,CAAC,aAAa,CAAC,GAAG,SAAS,WAAW,EAAE,CAkCzG;AAED;;;;;GAKG;AACH,wBAAgB,WAAW,CAAC,KAAK,EAAE,UAAU,EAAE,SAAS,EAAE,QAAQ,CAAC,aAAa,CAAC,GAAG,WAAW,GAAG,IAAI,CAGrG;AAED;;;;;;;;GAQG;AACH,wBAAgB,oBAAoB,CAAC,IAAI,EAAE,UAAU,GAAG,MAAM,GAAG,iBAAiB,GAAG,IAAI,CAcxF"}
+{"version":3,"file":"sniff.d.ts","sourceRoot":"","sources":["../../src/sniff.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;GAqBG;AAEH,OAAO,EAAE,KAAK,iBAAiB,EAAoB,MAAM,2BAA2B,CAAC;AACrF,OAAO,EAAE,KAAK,aAAa,EAAE,MAAM,YAAY,CAAC;AAEhD,sEAAsE;AACtE,MAAM,MAAM,eAAe,GAAG,MAAM,GAAG,SAAS,GAAG,KAAK,GAAG,KAAK,GAAG,OAAO,GAAG,KAAK,GAAG,MAAM,GAAG,OAAO,GAAG,KAAK,CAAC;AAE9G;;;;GAIG;AACH,eAAO,MAAM,aAAa,EAAE,SAAS,eAAe,EAUlD,CAAC;AAEH,8GAA8G;AAC9G,eAAO,MAAM,gBAAgB,OAAO,CAAC;AAErC,sDAAsD;AACtD,MAAM,WAAW,UAAU;IACvB,uDAAuD;IACvD,QAAQ,CAAC,QAAQ,CAAC,EAAE,MAAM,GAAG,IAAI,GAAG,SAAS,CAAC;IAC9C,2EAA2E;IAC3E,QAAQ,CAAC,QAAQ,CAAC,EAAE,MAAM,GAAG,IAAI,GAAG,SAAS,CAAC;IAC9C,sDAAsD;IACtD,QAAQ,CAAC,IAAI,CAAC,EAAE,UAAU,GAAG,MAAM,GAAG,IAAI,GAAG,SAAS,CAAC;CAC1D;AAED,uCAAuC;AACvC,MAAM,WAAW,WAAW;IACxB,kCAAkC;IAClC,QAAQ,CAAC,MAAM,EAAE,MAAM,CAAC;IACxB,sFAAsF;IACtF,QAAQ,CAAC,UAAU,EAAE,MAAM,CAAC;IAC5B,+FAA+F;IAC/F,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAC;IACzB,mEAAmE;IACnE,QAAQ,CAAC,SAAS,EAAE,OAAO,CAAC;IAC5B,wDAAwD;IACxD,QAAQ,CAAC,QAAQ,EAAE,OAAO,CAAC;IAC3B,+GAA+G;IAC/G,QAAQ,CAAC,OAAO,EAAE,iBAAiB,GAAG,IAAI,CAAC;CAC9C;AAED;;;;GAIG;AACH,wBAAgB,WAAW,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,GAAG,IAAI,CAO3D;AAED;;;;GAIG;AACH,wBAAgB,iBAAiB,CAAC,QAAQ,EAAE,MAAM,GAAG,MAAM,CAG1D;AAED;;;;;GAKG;AACH,wBAAgB,SAAS,CAAC,IAAI,EAAE,UAAU,GAAG,MAAM,GAAG,UAAU,CAU/D;AAED;;;;;;;GAOG;AACH,wBAAgB,WAAW,CAAC,KAAK,EAAE,UAAU,EAAE,SAAS,EAAE,QAAQ,CAAC,aAAa,CAAC,GAAG,SAAS,WAAW,EAAE,CAkCzG;AAED;;;;;GAKG;AACH,wBAAgB,WAAW,CAAC,KAAK,EAAE,UAAU,EAAE,SAAS,EAAE,QAAQ,CAAC,aAAa,CAAC,GAAG,WAAW,GAAG,IAAI,CAGrG;AAED;;;;;;;;GAQG;AACH,wBAAgB,oBAAoB,CAAC,IAAI,EAAE,UAAU,GAAG,MAAM,GAAG,iBAAiB,GAAG,IAAI,CAcxF"}

package/dist/src/sniff.js

@@ -35,6 +35,7 @@ export const GRAPH_FORMATS = Object.freeze([
     "dot",
     "pajek",
     "neo4j",
+    "obo",
 ]);
 /** How many bytes of the input the sniffers look at; the registry reads no more than this before deciding. */
 export const SNIFF_HEAD_BYTES = 8192;
@@ -183,9 +184,20 @@ function skeletonOf(text) {
             case "options":
                 root[key] = objectOf(keys.get(key));
                 break;
-            case "graphs":
-                root[key] = [];
+            case "graphs": {
+                // the keys of any node or edge of the first graph: OBO Graphs or JGF (design 1.6)
+                const nodes = keys.get("graphs[0].nodes[]");
+                const edges = keys.get("graphs[0].edges[]");
+                const graph = {};
+                if (nodes !== undefined) {
+                    graph.nodes = [objectOf(nodes)];
+                }
+                if (edges !== undefined) {
+                    graph.edges = [objectOf(edges)];
+                }
+                root[key] = nodes === undefined && edges === undefined ? [] : [graph];
                 break;
+            }
             case "nodes":
             case "edges":
             case "links": {
@@ -220,7 +232,8 @@ function objectOf(names) {
  * scanner tracks a container stack (the key each object sits under, the index of each array
  * element) and records a key when it is at one of the watched paths; a head cut inside a string
  * or a number simply ends the scan. For a top-level array the first element's keys are recorded
- * under `nodes[0]`.
+ * under `nodes[0]`; the keys of every node and edge of `graphs[0]` under `graphs[0].nodes[]` and
+ * `graphs[0].edges[]`.
  * @param text - the head, starting with `{` or `[`
  * @returns key sets by path
  */
@@ -243,6 +256,13 @@ function scanKeys(text) {
         if (depth === 2 && kinds[0] === "object" && kinds[1] === "object") {
             return labels[1] === "graph" || labels[1] === "options" ? labels[1] : null;
         }
+        if (depth === 5 &&
+            kinds.join() === "object,array,object,array,object" &&
+            labels[1] === "graphs" &&
+            labels[2] === "0" &&
+            (labels[3] === "nodes" || labels[3] === "edges")) {
+            return labels[3] === "nodes" ? "graphs[0].nodes[]" : "graphs[0].edges[]";
+        }
         if (depth === 3 && kinds[0] === "object" && kinds[1] === "array" && kinds[2] === "object") {
             const section = labels[1];
             if ((section === "nodes" || section === "edges" || section === "links") && labels[2] === "0") {

package/dist/src/sniff.js.map

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package/dist/src/types.d.ts

@@ -64,6 +64,28 @@ export interface CommonImportOptions {
      */
     encoding?: string | undefined;
 }
+/**
+ * Which graph of an input that holds several to read: by position or by name, never both. An
+ * importer of a format that can hold several graphs (a Cytoscape session, a CX collection, a JGF
+ * or OBO Graphs `graphs` array) accepts these next to its own options; absent, it reads the first.
+ */
+export interface GraphChoiceOptions {
+    /** The 0-based position of the graph, as `GraphListing.index` gives it. */
+    graphIndex?: number | undefined;
+    /** The name of the graph, as `GraphListing.name` gives it; a name two graphs share is refused. */
+    graphName?: string | undefined;
+}
+/** One graph of an input that can hold several, as an importer's listGraphs() describes it. */
+export interface GraphListing {
+    /** The value graphIndex takes to read it. */
+    readonly index: number;
+    /** The value graphName takes to read it, or null when the graph has no name. */
+    readonly name: string | null;
+    /** The node count when the input states it cheaply, else null. */
+    readonly nodes: number | null;
+    /** The edge count when the input states it cheaply, else null. */
+    readonly edges: number | null;
+}
 /**
  * An importer plugin (design section 8.4): pushes scalars into the caller's sink in one pass and
  * never freezes. `Opts` is its format-specific option set; the default `unknown` lets a caller pass
@@ -102,6 +124,15 @@ export interface GraphImporter<Opts = unknown> {
      * @returns one report per graph, in document order
      */
     importAll?(input: ImportInput, sinkFor: (index: number) => GraphSink, options?: Opts & CommonImportOptions): Promise<ImportReport[]>;
+    /**
+     * List the graphs of an input that can hold several without importing them, so a caller can
+     * offer a choice before reading one with `graphIndex` or `graphName`. An importer without this
+     * method does not list its graphs; `import()` reads the first.
+     * @param input - the text, bytes or stream to read
+     * @param options - format-specific and common options
+     * @returns one listing per graph, in document order
+     */
+    listGraphs?(input: ImportInput, options?: Opts & CommonImportOptions): Promise<readonly GraphListing[]>;
 }
 /**
  * What a format can express without loss (design section 8.5): the fidelity matrix of research

package/dist/src/types.d.ts.map

@@ -1 +1 @@
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package/dist/src/types.js.map

@@ -1 +1 @@
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+{"version":3,"file":"types.js","sourceRoot":"","sources":["../../src/types.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAGH,gBAAgB,GAInB,MAAM,uBAAuB,CAAC;AA8R/B;;;;GAIG;AACH,MAAM,OAAO,WAAY,SAAQ,gBAAgB;IAI7C;;;;;OAKG;IACH,YAAY,OAAe,EAAE,MAAoB,EAAE,OAA2C;QAC1F,KAAK,CAAC,UAAU,EAAE,OAAO,EAAE,OAAO,CAAC,CAAC;QACpC,IAAI,CAAC,IAAI,GAAG,aAAa,CAAC;QAC1B,IAAI,CAAC,MAAM,GAAG,MAAM,CAAC;IACzB,CAAC;CACJ"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@graphty/graph-io",
-  "version": "0.3.16",
+  "version": "0.3.18",
   "description": "Importers and exporters (GEXF, GraphML, GML, DOT, Pajek, CSV, JSON, Neo4j) for the @graphty/graph-format snapshot",
   "author": "Adam Powers <apowers@ato.ms>",
   "type": "module",
@@ -51,6 +51,11 @@
       "types": "./dist/neo4j.d.ts",
       "import": "./dist/neo4j.js",
       "default": "./dist/neo4j.js"
+    },
+    "./obo": {
+      "types": "./dist/obo.d.ts",
+      "import": "./dist/obo.js",
+      "default": "./dist/obo.js"
     }
   },
   "sideEffects": false,