@graphty/graph-io 0.0.0 → 0.2.0

package/dist/src/formats/csv/exporter.js.map

@@ -0,0 +1 @@
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package/dist/src/formats/csv/header.d.ts

@@ -0,0 +1,66 @@
+/**
+ * Header handling of the CSV importer: whether the first row is a header, which columns hold the
+ * endpoints, the weight, the Gephi per-row `Type`, the edge id and the label (by name lists and
+ * by position), and the synthesised names of a headerless file (`column1`, `column2`, ...).
+ *
+ * Name resolution is exact first, then case-insensitive, over a candidate list in priority order,
+ * so `source` / `Source` / `SOURCE`, `src`, `from` all resolve without configuration; the Gephi
+ * dialect (exact `Source` and `Target` headers) additionally makes an exact `Type` column the
+ * per-row direction. A caller may name any column explicitly or give its 0-based position.
+ */
+/** A column named by header text or by 0-based position. */
+export type CsvColumnRef = string | number;
+/** Header candidates of the source endpoint, in priority order (matched exactly, then case-insensitively). */
+export declare const SOURCE_NAMES: readonly string[];
+/** Header candidates of the target endpoint. */
+export declare const TARGET_NAMES: readonly string[];
+/** Header candidates of a node table's id column. */
+export declare const ID_NAMES: readonly string[];
+/** Header candidates of a label column (node or edge). */
+export declare const LABEL_NAMES: readonly string[];
+/** Header candidates of an edge id column. */
+export declare const EDGE_ID_NAMES: readonly string[];
+/** The Gephi per-row direction column. */
+export declare const TYPE_NAME = "Type";
+/**
+ * Find a column by name: candidates are tried in priority order, each first exactly and then
+ * case-insensitively, so `Source` (a case variant of the first candidate) beats an exact `from`.
+ * @param names - the header names
+ * @param candidates - the names to look for, in priority order
+ * @returns the column index, or -1
+ */
+export declare function findColumn(names: readonly string[], candidates: readonly string[]): number;
+/**
+ * Resolve an explicit column option: a 0-based position (checked against the width) or a header
+ * name (exact, then case-insensitive). An option naming a column the file does not have is
+ * E_UNSUPPORTED (details.option, details.found): the file cannot be read as requested.
+ * @param names - the header names
+ * @param ref - the option value
+ * @param option - the option name, for the error
+ * @returns the column index
+ */
+export declare function resolveColumnRef(names: readonly string[], ref: CsvColumnRef, option: string): number;
+/**
+ * Decide whether the first row of a file is a header when the caller left it to the importer: it
+ * is when any cell is a known column name (source, target, id, label, weight, type...), or when
+ * every cell is non-numeric text while the second row has a numeric cell (`u,v` over `1,2`);
+ * a first row with a numeric cell is data, and so is one that looks exactly like the rows below it.
+ * @param first - the first row
+ * @param second - the second row, or null when the file has one row
+ * @returns true when the first row is a header
+ */
+export declare function looksLikeHeader(first: readonly string[], second: readonly string[] | null): boolean;
+/**
+ * The synthesised header of a headerless file: `column1` ... `columnN`.
+ * @param width - the number of cells of the first row
+ * @returns the names
+ */
+export declare function positionalNames(width: number): string[];
+/**
+ * Header cells as column names: trimmed, a BOM-free first cell (the reader strips it), and an
+ * empty cell named by its position so every column has a name.
+ * @param cells - the header row
+ * @returns the names
+ */
+export declare function headerNames(cells: readonly string[]): string[];
+//# sourceMappingURL=header.d.ts.map

package/dist/src/formats/csv/header.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"header.d.ts","sourceRoot":"","sources":["../../../../src/formats/csv/header.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAMH,4DAA4D;AAC5D,MAAM,MAAM,YAAY,GAAG,MAAM,GAAG,MAAM,CAAC;AAE3C,8GAA8G;AAC9G,eAAO,MAAM,YAAY,EAAE,SAAS,MAAM,EAUxC,CAAC;AAEH,gDAAgD;AAChD,eAAO,MAAM,YAAY,EAAE,SAAS,MAAM,EAWxC,CAAC;AAEH,qDAAqD;AACrD,eAAO,MAAM,QAAQ,EAAE,SAAS,MAAM,EAAiD,CAAC;AAExF,0DAA0D;AAC1D,eAAO,MAAM,WAAW,EAAE,SAAS,MAAM,EAA6B,CAAC;AAEvE,8CAA8C;AAC9C,eAAO,MAAM,aAAa,EAAE,SAAS,MAAM,EAA0B,CAAC;AAEtE,0CAA0C;AAC1C,eAAO,MAAM,SAAS,SAAS,CAAC;AAahC;;;;;;GAMG;AACH,wBAAgB,UAAU,CAAC,KAAK,EAAE,SAAS,MAAM,EAAE,EAAE,UAAU,EAAE,SAAS,MAAM,EAAE,GAAG,MAAM,CAa1F;AAED;;;;;;;;GAQG;AACH,wBAAgB,gBAAgB,CAAC,KAAK,EAAE,SAAS,MAAM,EAAE,EAAE,GAAG,EAAE,YAAY,EAAE,MAAM,EAAE,MAAM,GAAG,MAAM,CAoBpG;AAED;;;;;;;;GAQG;AACH,wBAAgB,eAAe,CAAC,KAAK,EAAE,SAAS,MAAM,EAAE,EAAE,MAAM,EAAE,SAAS,MAAM,EAAE,GAAG,IAAI,GAAG,OAAO,CAenG;AAED;;;;GAIG;AACH,wBAAgB,eAAe,CAAC,KAAK,EAAE,MAAM,GAAG,MAAM,EAAE,CAMvD;AAED;;;;;GAKG;AACH,wBAAgB,WAAW,CAAC,KAAK,EAAE,SAAS,MAAM,EAAE,GAAG,MAAM,EAAE,CAK9D"}

package/dist/src/formats/csv/header.js

@@ -0,0 +1,152 @@
+/**
+ * Header handling of the CSV importer: whether the first row is a header, which columns hold the
+ * endpoints, the weight, the Gephi per-row `Type`, the edge id and the label (by name lists and
+ * by position), and the synthesised names of a headerless file (`column1`, `column2`, ...).
+ *
+ * Name resolution is exact first, then case-insensitive, over a candidate list in priority order,
+ * so `source` / `Source` / `SOURCE`, `src`, `from` all resolve without configuration; the Gephi
+ * dialect (exact `Source` and `Target` headers) additionally makes an exact `Type` column the
+ * per-row direction. A caller may name any column explicitly or give its 0-based position.
+ */
+import { GraphFormatError } from "@graphty/graph-format";
+import { inferTextDtype } from "../../common/text.js";
+/** Header candidates of the source endpoint, in priority order (matched exactly, then case-insensitively). */
+export const SOURCE_NAMES = Object.freeze([
+    "source",
+    "src",
+    "from",
+    "start",
+    "source_id",
+    "sourceid",
+    "fromnodeid",
+    "start_id",
+    ":start_id",
+]);
+/** Header candidates of the target endpoint. */
+export const TARGET_NAMES = Object.freeze([
+    "target",
+    "dst",
+    "dest",
+    "to",
+    "end",
+    "target_id",
+    "targetid",
+    "tonodeid",
+    "end_id",
+    ":end_id",
+]);
+/** Header candidates of a node table's id column. */
+export const ID_NAMES = Object.freeze(["id", "node", "name", "key"]);
+/** Header candidates of a label column (node or edge). */
+export const LABEL_NAMES = Object.freeze(["label"]);
+/** Header candidates of an edge id column. */
+export const EDGE_ID_NAMES = Object.freeze(["id"]);
+/** The Gephi per-row direction column. */
+export const TYPE_NAME = "Type";
+/** Every name that marks a first row as a header when the caller leaves detection to the importer. */
+const HEADER_MARKERS = new Set([
+    ...SOURCE_NAMES,
+    ...TARGET_NAMES,
+    ...ID_NAMES,
+    ...LABEL_NAMES,
+    "weight",
+    "type",
+    "value",
+]);
+/**
+ * Find a column by name: candidates are tried in priority order, each first exactly and then
+ * case-insensitively, so `Source` (a case variant of the first candidate) beats an exact `from`.
+ * @param names - the header names
+ * @param candidates - the names to look for, in priority order
+ * @returns the column index, or -1
+ */
+export function findColumn(names, candidates) {
+    for (const candidate of candidates) {
+        const exact = names.indexOf(candidate);
+        if (exact >= 0) {
+            return exact;
+        }
+        const lower = candidate.toLowerCase();
+        const loose = names.findIndex((name) => name.toLowerCase() === lower);
+        if (loose >= 0) {
+            return loose;
+        }
+    }
+    return -1;
+}
+/**
+ * Resolve an explicit column option: a 0-based position (checked against the width) or a header
+ * name (exact, then case-insensitive). An option naming a column the file does not have is
+ * E_UNSUPPORTED (details.option, details.found): the file cannot be read as requested.
+ * @param names - the header names
+ * @param ref - the option value
+ * @param option - the option name, for the error
+ * @returns the column index
+ */
+export function resolveColumnRef(names, ref, option) {
+    if (typeof ref === "number") {
+        if (!Number.isInteger(ref) || ref < 0 || ref >= names.length) {
+            throw new GraphFormatError("E_UNSUPPORTED", `option ${option}: column ${ref} does not exist (the file has ${names.length} column(s))`, { option, found: ref, columns: names.length });
+        }
+        return ref;
+    }
+    const index = findColumn(names, [ref]);
+    if (index < 0) {
+        throw new GraphFormatError("E_UNSUPPORTED", `option ${option}: no column named ${JSON.stringify(ref)}`, {
+            option,
+            found: ref,
+            columns: [...names],
+        });
+    }
+    return index;
+}
+/**
+ * Decide whether the first row of a file is a header when the caller left it to the importer: it
+ * is when any cell is a known column name (source, target, id, label, weight, type...), or when
+ * every cell is non-numeric text while the second row has a numeric cell (`u,v` over `1,2`);
+ * a first row with a numeric cell is data, and so is one that looks exactly like the rows below it.
+ * @param first - the first row
+ * @param second - the second row, or null when the file has one row
+ * @returns true when the first row is a header
+ */
+export function looksLikeHeader(first, second) {
+    let allText = true;
+    for (const cell of first) {
+        const text = cell.trim();
+        if (HEADER_MARKERS.has(text.toLowerCase())) {
+            return true;
+        }
+        if (text.length === 0 || inferTextDtype(text) !== "string") {
+            allText = false;
+        }
+    }
+    if (!allText || second === null) {
+        return false;
+    }
+    return second.some((cell) => cell.trim().length > 0 && inferTextDtype(cell.trim()) !== "string");
+}
+/**
+ * The synthesised header of a headerless file: `column1` ... `columnN`.
+ * @param width - the number of cells of the first row
+ * @returns the names
+ */
+export function positionalNames(width) {
+    const names = [];
+    for (let i = 1; i <= width; i++) {
+        names.push(`column${i}`);
+    }
+    return names;
+}
+/**
+ * Header cells as column names: trimmed, a BOM-free first cell (the reader strips it), and an
+ * empty cell named by its position so every column has a name.
+ * @param cells - the header row
+ * @returns the names
+ */
+export function headerNames(cells) {
+    return cells.map((cell, i) => {
+        const name = cell.trim();
+        return name.length === 0 ? `column${i + 1}` : name;
+    });
+}
+//# sourceMappingURL=header.js.map

package/dist/src/formats/csv/header.js.map

@@ -0,0 +1 @@
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package/dist/src/formats/csv/importer.d.ts

@@ -0,0 +1,82 @@
+/**
+ * The CSV / TSV importer (design sections 8.4 and 8.6; research note 07 section 2.6): a streaming
+ * edge-list reader for the generic (`source,target[,weight,...]`), Gephi (`Source,Target,Type,Id,
+ * Label,Weight,...`) and headerless (`u v [w]`) dialects, with an optional node table merged by id.
+ *
+ * - The delimiter is sniffed from a preview unless given; LF, CRLF and lone-CR files all read.
+ * - The first row is a header when it holds a known column name or when it is all text over a
+ *   numeric second row (`header: "auto"`); a headerless file is positional: source, target,
+ *   weight (when `weightFrom` is not null), then `column4`... as attributes.
+ * - Endpoint and node ids are text cells coerced by ONE rule per import call (`ids`, default
+ *   "canonical": `"1"` becomes the number 1, `"01"` stays a string) over the node table and the
+ *   edge table alike, so they agree across the two files.
+ * - Direction is per row in the Gephi dialect (`Type` = Directed / Undirected / Mutual, blank =
+ *   `defaultDirected`) and `defaultDirected` (true) otherwise; the first edge row sets the sink's
+ *   direction and later rows that differ go through `onMixedDirection` (expansion by default).
+ * - The weight column (`weightFrom`, default "weight", matched case-insensitively) is parsed per
+ *   row; a blank cell means "no weight given" and the edge is pushed without one.
+ * - Every other column is an attribute: cells are parsed by the fixed lexical grammar of design
+ *   section 5.1 and the sink infers the column dtype (widening per column, never per cell); an
+ *   all-text column of low cardinality becomes a dict (design section 5.4); an `id` column of the
+ *   edge table is the edge id (role id, unique); a `label` column is the label (role label).
+ * - Per-row problems (wrong field count, blank endpoint, invalid weight, bad Type, refused id)
+ *   are recorded and the row skipped; the import aborts with ImportError once `errorLimit` is
+ *   exceeded, on a malformed or unterminated quoted field, on an empty input and on a header
+ *   without endpoint (or id) columns.
+ */
+import { type GraphImporter, type ImportInput } from "../../types.js";
+import { type CsvColumnRef } from "./header.js";
+/** The format-specific options of the CSV importer. */
+export interface CsvImportOptions {
+    /** The field delimiter; sniffed from the first rows when omitted (`,`, tab, `;`, `|`, space). */
+    delimiter?: string | undefined;
+    /** Whether the first row is a header; "auto" (default) decides from its content. */
+    header?: boolean | "auto" | undefined;
+    /**
+     * What the input is: an edge table, a node table, or "auto" (default): an edge table when
+     * source and target columns resolve, a node table when only an id column does.
+     */
+    table?: "edges" | "nodes" | "auto" | undefined;
+    /** The source column, by name or 0-based position; resolved from the header by default. */
+    sourceColumn?: CsvColumnRef | undefined;
+    /** The target column, by name or 0-based position; resolved from the header by default. */
+    targetColumn?: CsvColumnRef | undefined;
+    /**
+     * The per-row direction column (Directed / Undirected / Mutual); by default the exact `Type`
+     * column of a Gephi table (exact `Source` and `Target` headers); null reads no such column.
+     */
+    typeColumn?: CsvColumnRef | null | undefined;
+    /** The id column of a node table, by name or position; resolved from the header by default. */
+    idColumn?: CsvColumnRef | undefined;
+    /** A node table read before the edges: its ids become nodes and its other columns node attributes. */
+    nodes?: ImportInput | undefined;
+}
+/** Issue code: the input holds no header row at all. */
+export declare const EMPTY_INPUT_CODE = "E_EMPTY_INPUT";
+/** Issue code: the header names no source / target (or, for a node table, no id) column. */
+export declare const NO_ENDPOINT_COLUMNS_CODE = "E_CSV_NO_ENDPOINT_COLUMNS";
+/** Issue code: a node table without an id column. */
+export declare const NO_ID_COLUMN_CODE = "E_CSV_NO_ID_COLUMN";
+/** Issue code: a row with a different number of fields than the header. */
+export declare const FIELD_COUNT_CODE = "E_CSV_FIELD_COUNT";
+/** Issue code: an edge row with a blank source or target cell. */
+export declare const MISSING_ENDPOINT_CODE = "E_MISSING_ENDPOINT";
+/** Issue code: a node row with a blank id cell. */
+export declare const MISSING_ID_CODE = "E_MISSING_ID";
+/** Issue code: a Type cell that is not Directed, Undirected or Mutual. */
+export declare const BAD_TYPE_CODE = "E_CSV_BAD_TYPE";
+/** Issue code: the table has a header and no data rows. */
+export declare const NO_DATA_ROWS_CODE = "W_CSV_NO_DATA_ROWS";
+/** Issue code: a node table row repeats an id; its attributes overwrite the earlier row's. */
+export declare const DUPLICATE_NODE_CODE = "W_DUPLICATE_NODE";
+/** Issue code: two distinct id cells became one id under `ids: "number"` (design section 4.1). */
+export declare const ID_MERGED_CODE = "W_ID_MERGED";
+/** Issue code: an explicitly named weight column the file does not have. */
+export declare const COLUMN_MISSING_CODE = "W_CSV_COLUMN_MISSING";
+/** Issue code: a column whose role (id, label) is already held by another column of the sink. */
+export declare const ROLE_TAKEN_CODE = "W_ROLE_TAKEN";
+/** Issue code: a repeated edge id (the column is unique); the edge is skipped. */
+export declare const DUPLICATE_EDGE_ID_CODE = "E_DUPLICATE_EDGE_ID";
+/** The CSV / TSV importer plugin (subpath `@graphty/graph-io/csv`). */
+export declare const csvImporter: GraphImporter<CsvImportOptions>;
+//# sourceMappingURL=importer.d.ts.map

package/dist/src/formats/csv/importer.d.ts.map

@@ -0,0 +1 @@
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