@graphty/graph-format 0.0.0 → 0.2.0

package/dist/tsconfig.build.tsbuildinfo

@@ -0,0 +1 @@
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package/package.json

@@ -1,10 +1,75 @@
 {
   "name": "@graphty/graph-format",
-  "version": "0.0.0",
-  "description": "OIDC trusted publishing setup package for @graphty/graph-format",
+  "version": "0.2.0",
+  "description": "Frozen CSR graph data format over typed arrays, shared by CPU and WebGPU graph algorithms",
+  "author": "Adam Powers <apowers@ato.ms>",
+  "type": "module",
+  "main": "dist/graph-format.js",
+  "types": "dist/graph-format.d.ts",
+  "exports": {
+    ".": {
+      "types": "./dist/graph-format.d.ts",
+      "import": "./dist/graph-format.js",
+      "default": "./dist/graph-format.js"
+    }
+  },
+  "sideEffects": false,
+  "files": [
+    "dist/",
+    "src/",
+    "README.md",
+    "LICENSE"
+  ],
+  "publishConfig": {
+    "access": "public",
+    "provenance": true
+  },
+  "engines": {
+    "node": ">=18.19.0"
+  },
+  "repository": {
+    "type": "git",
+    "url": "git+https://github.com/graphty-org/graphty-monorepo.git",
+    "directory": "graph-format"
+  },
   "keywords": [
-    "oidc",
-    "trusted-publishing",
-    "setup"
-  ]
-}
+    "graph",
+    "csr",
+    "compressed-sparse-row",
+    "typed-array",
+    "webgpu",
+    "graph-format"
+  ],
+  "license": "MIT",
+  "bugs": {
+    "url": "https://github.com/graphty-org/graphty-monorepo/issues"
+  },
+  "homepage": "https://github.com/graphty-org/graphty-monorepo/tree/master/graph-format#readme",
+  "devDependencies": {
+    "@vitest/coverage-v8": "^3.2.4",
+    "@webgpu/types": "^0.1.72",
+    "@vitest/ui": "^3.2.4",
+    "fast-check": "^4.2.0",
+    "tsx": "^4.20.3",
+    "typescript": "^5.9.3",
+    "vite": "^7.0.5",
+    "vitest": "^3.2.4",
+    "webgpu": "^0.4.0"
+  },
+  "scripts": {
+    "build": "tsc -p tsconfig.build.json",
+    "build:bundle": "node scripts/build-bundle.js",
+    "build:all": "npm run build && npm run build:bundle",
+    "lint": "eslint && tsc --noEmit -p tsconfig.json",
+    "lint:fix": "eslint --fix",
+    "typecheck": "tsc --noEmit -p tsconfig.json",
+    "typecheck:strict-consumer": "tsc -p tsconfig.strict-consumer.json",
+    "test": "vitest",
+    "test:ui": "vitest --ui",
+    "test:run": "vitest run",
+    "coverage": "vitest run --coverage",
+    "coverage:preview": "npx serve coverage -p 9056",
+    "benchmark": "tsx benchmarks/run.ts",
+    "ready:commit": "npm run build:all && npm run lint && npm run typecheck:strict-consumer && npm run test:run"
+  }
+}

package/src/builder/arena.ts

@@ -0,0 +1,192 @@
+/**
+ * Core-array allocation for the freeze pipeline (design sections 6.3 step 11 and 10.3): the five core
+ * arrays of a snapshot laid out hot to cold (rowPtr, colIdx, weights, arcToEdge, edgeToArc) inside ONE
+ * ArrayBuffer at 256-byte-aligned offsets, or -- for the transient pass of a non-"keep" duplicate
+ * policy and for `freeze({ arena: false })` -- as separate fresh buffers. Either way every array is
+ * 4-byte aligned over a plain ArrayBuffer (invariant I10). A zero-length array, an absent weights
+ * array and an identity permutation have a null segment and occupy nothing in the arena.
+ *
+ * The counting-sort scatter of counting-sort.ts writes straight into the arrays returned here, so a
+ * "keep"-policy freeze touches the arena exactly once (design section 6.3 step 6).
+ */
+
+import { ALIGNMENT } from "../constants.js";
+import { type ArenaLayout, type ArenaSegment, type CoreArrayName, type F32, type U32 } from "../types/index.js";
+import { layoutSegments } from "../util/typed-array.js";
+
+/** The shape of a core to allocate: the counts and which optional arrays exist. */
+interface CoreShape {
+    /** The node count n. */
+    readonly nodeCount: number;
+    /** The arc count A. */
+    readonly arcCount: number;
+    /** The logical edge count E. */
+    readonly edgeCount: number;
+    /** Whether the weights array exists. */
+    readonly weighted: boolean;
+    /** Whether the permutation is the identity, in which case arcToEdge / edgeToArc are not allocated. */
+    readonly identity: boolean;
+}
+
+/** The five core arrays plus the arena they live in (null for separate buffers). */
+export interface CoreArrays {
+    /** nodeCount + 1 row offsets. */
+    readonly rowPtr: U32;
+    /** arcCount targets. */
+    readonly colIdx: U32;
+    /** arcCount f32 weights, or null when unweighted. */
+    readonly weights: F32 | null;
+    /** arcCount entries, or null when the permutation is the identity. */
+    readonly arcToEdge: U32 | null;
+    /** edgeCount entries, or null when the permutation is the identity. */
+    readonly edgeToArc: U32 | null;
+    /** The arena, or null when the arrays are separate buffers. */
+    readonly arena: ArenaLayout | null;
+}
+
+/** The order of the core arrays inside the arena: hot to cold (design section 10.3). */
+/** The core arrays in arena order, hot to cold (design section 10.3); the wire and fromCsr use the same order. */
+export const CORE_ORDER: readonly CoreArrayName[] = ["rowPtr", "colIdx", "weights", "arcToEdge", "edgeToArc"];
+
+/**
+ * The unpadded byte length of every core array in arena order for a shape.
+ * @param shape - the core shape
+ * @returns five byte lengths; 0 for an absent array
+ */
+function byteLengthsOf(shape: CoreShape): number[] {
+    const permArcs = shape.identity ? 0 : shape.arcCount;
+    const permEdges = shape.identity ? 0 : shape.edgeCount;
+    return [
+        4 * (shape.nodeCount + 1),
+        4 * shape.arcCount,
+        shape.weighted ? 4 * shape.arcCount : 0,
+        4 * permArcs,
+        4 * permEdges,
+    ];
+}
+
+/**
+ * Allocate the core arrays as separate fresh buffers (design section 6.3 step 11 with `arena: false`,
+ * and the transient target of a non-"keep" duplicate policy). Every array is a fresh typed array, so
+ * I10 holds by the constructor guarantee.
+ * @param shape - the core shape
+ * @returns the arrays with `arena: null`
+ */
+export function allocateSeparateCore(shape: CoreShape): CoreArrays {
+    return {
+        rowPtr: new Uint32Array(shape.nodeCount + 1),
+        colIdx: new Uint32Array(shape.arcCount),
+        weights: shape.weighted ? new Float32Array(shape.arcCount) : null,
+        arcToEdge: shape.identity ? null : new Uint32Array(shape.arcCount),
+        edgeToArc: shape.identity ? null : new Uint32Array(shape.edgeCount),
+        arena: null,
+    };
+}
+
+/**
+ * Allocate the core arrays inside one arena (design section 10.3): one ArrayBuffer of the total padded
+ * size, every non-empty segment starting at a multiple of 256 bytes, ordered rowPtr, colIdx, weights,
+ * arcToEdge, edgeToArc. `hotByteLength` is the end of the weights segment (or of colIdx when
+ * unweighted). For the worked example of section 10.3 (n = 100,000, A = 2,000,000, E = 1,000,000,
+ * weighted, permutations materialised) the segments start at 0 / 400,128 / 8,400,128 / 16,400,128 /
+ * 24,400,128 and the arena is 28,400,128 bytes.
+ * @param shape - the core shape
+ * @returns the arrays as views into the arena, plus its layout
+ */
+export function allocateArenaCore(shape: CoreShape): CoreArrays {
+    const byteLengths = byteLengthsOf(shape);
+    const layout = layoutSegments(byteLengths, ALIGNMENT);
+    const buffer = new ArrayBuffer(layout.byteLength);
+    const segments: Record<CoreArrayName, ArenaSegment | null> = {
+        rowPtr: null,
+        colIdx: null,
+        weights: null,
+        arcToEdge: null,
+        edgeToArc: null,
+    };
+    let hotByteLength = 0;
+    for (let i = 0; i < CORE_ORDER.length; i++) {
+        const offset = layout.offsets[i];
+        if (offset === null) {
+            continue;
+        }
+        const segment: ArenaSegment = Object.freeze({ byteOffset: offset, byteLength: byteLengths[i] });
+        segments[CORE_ORDER[i]] = segment;
+        if (i <= 2) {
+            hotByteLength = offset + byteLengths[i];
+        }
+    }
+    const u32 = (name: CoreArrayName, length: number): U32 => {
+        const segment = segments[name];
+        return segment === null ? new Uint32Array(0) : new Uint32Array(buffer, segment.byteOffset, length);
+    };
+    let weights: F32 | null = null;
+    if (shape.weighted) {
+        const segment = segments.weights;
+        weights = segment === null ? new Float32Array(0) : new Float32Array(buffer, segment.byteOffset, shape.arcCount);
+    }
+    const arena: ArenaLayout = Object.freeze({
+        buffer,
+        byteOffset: 0,
+        byteLength: layout.byteLength,
+        alignment: ALIGNMENT,
+        segments: Object.freeze(segments),
+        hotByteLength,
+    });
+    return {
+        rowPtr: u32("rowPtr", shape.nodeCount + 1),
+        colIdx: u32("colIdx", shape.arcCount),
+        weights,
+        arcToEdge: shape.identity ? null : u32("arcToEdge", shape.arcCount),
+        edgeToArc: shape.identity ? null : u32("edgeToArc", shape.edgeCount),
+        arena,
+    };
+}
+
+/**
+ * Allocate the core arrays for a shape, in one arena or as separate buffers.
+ * @param shape - the core shape
+ * @param useArena - true for one 256-aligned arena (the freeze default), false for separate buffers
+ * @returns the arrays
+ */
+export function allocateCoreArrays(shape: CoreShape, useArena: boolean): CoreArrays {
+    return useArena ? allocateArenaCore(shape) : allocateSeparateCore(shape);
+}
+
+/**
+ * The shape of an already built core.
+ * @param core - the core arrays
+ * @returns the shape
+ */
+export function shapeOfCore(core: CoreArrays): CoreShape {
+    return {
+        nodeCount: core.rowPtr.length - 1,
+        arcCount: core.colIdx.length,
+        edgeCount: core.edgeToArc === null ? core.colIdx.length : core.edgeToArc.length,
+        weighted: core.weights !== null,
+        identity: core.arcToEdge === null,
+    };
+}
+
+/**
+ * Copy a core built in separate buffers into a fresh arena of the same shape (the non-"keep" duplicate
+ * policy path of design section 6.3 step 7 when nothing was merged: the transient arrays are final,
+ * only their home changes). The source arrays are not modified.
+ * @param core - the core in separate buffers
+ * @returns the same contents as views into a new arena
+ */
+export function copyCoreIntoArena(core: CoreArrays): CoreArrays {
+    const out = allocateArenaCore(shapeOfCore(core));
+    out.rowPtr.set(core.rowPtr);
+    out.colIdx.set(core.colIdx);
+    if (out.weights !== null && core.weights !== null) {
+        out.weights.set(core.weights);
+    }
+    if (out.arcToEdge !== null && core.arcToEdge !== null) {
+        out.arcToEdge.set(core.arcToEdge);
+    }
+    if (out.edgeToArc !== null && core.edgeToArc !== null) {
+        out.edgeToArc.set(core.edgeToArc);
+    }
+    return out;
+}