@graphty/cytoscape-extensions 0.0.5 → 0.0.7

package/README.md

@@ -8,8 +8,6 @@ datasets, and import and export of GraphML, GEXF, GML, DOT, Pajek, CSV, JSON, Ne
 simulations and 17 of the algorithms run on WebGPU when the browser or Node has a usable device, with nothing extra
 to import.
 
-The package is not on npm yet. The names and install commands below are the ones it will be published under.
-
 - Documentation: [graphty.app/docs/cytoscape-extensions](https://graphty.app/docs/cytoscape-extensions/)
 - Demo: [every layout and algorithm in a live graph](https://graphty.app/storybook/cytoscape-extensions/)
 

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@graphty/cytoscape-extensions",
-  "version": "0.0.5",
+  "version": "0.0.7",
   "description": "Graphty layouts, algorithms, graph generators, sample datasets and file import/export as Cytoscape.js extensions",
   "author": "Adam Powers <apowers@ato.ms>",
   "type": "module",
@@ -71,9 +71,9 @@
   },
   "homepage": "https://github.com/graphty-org/graphty-monorepo/tree/master/cytoscape-extensions#readme",
   "dependencies": {
-    "@graphty/webgpu-graph-algorithms": "^0.6.41",
-    "@graphty/graph-samples": "^0.1.25",
-    "@graphty/graph-io": "^0.3.32"
+    "@graphty/graph-io": "^0.3.33",
+    "@graphty/graph-samples": "^0.1.26",
+    "@graphty/webgpu-graph-algorithms": "^0.6.43"
   },
   "peerDependencies": {
     "@graphty/algorithms": "^3.0.0",
@@ -102,9 +102,9 @@
     "typescript": "^5.9.3",
     "vite": "^7.0.5",
     "vitest": "4.1.11",
-    "@graphty/graph-format": "^1.3.10",
-    "@graphty/algorithms": "^3.3.12",
-    "@graphty/layout": "^2.2.13"
+    "@graphty/algorithms": "^3.4.0",
+    "@graphty/graph-format": "^1.3.11",
+    "@graphty/layout": "^2.3.0"
   },
   "scripts": {
     "build": "node -e \"require('fs').rmSync('dist',{recursive:true,force:true})\" && tsc -p tsconfig.build.json && vite build --config vite.bundle.config.ts --mode cdn --logLevel warn && vite build --config vite.bundle.config.ts --logLevel warn",

package/src/algorithm-options.ts

@@ -74,7 +74,7 @@ export const OPTION_NAMES: Readonly<Record<string, readonly string[]>> = {
         "weight",
     ],
     graphtyHasCycle: ["directed", "gpu"],
-    graphtyHierarchicalClustering: ["directed", "gpu", "linkage"],
+    graphtyHierarchicalClustering: ["directed", "gpu", "linkage", "maxNodes"],
     graphtyHits: ["directed", "field", "gpu", "maxIterations", "normalized", "tolerance", "weight"],
     graphtyIsBipartite: ["arcs", "directed", "field", "gpu"],
     graphtyIsGraphIsomorphic: ["directed", "edgeMatch", "gpu", "nodeMatch", "other"],
@@ -170,7 +170,16 @@ export const OPTION_NAMES: Readonly<Record<string, readonly string[]>> = {
         "seed",
         "tolerance",
     ],
-    graphtyTeraHAC: ["directed", "distanceThreshold", "field", "gpu", "linkage", "numClusters", "useGraphDistance"],
+    graphtyTeraHAC: [
+        "directed",
+        "distanceThreshold",
+        "field",
+        "gpu",
+        "linkage",
+        "maxNodes",
+        "numClusters",
+        "useGraphDistance",
+    ],
     graphtyTopAdamicAdarCandidatesForNode: ["candidates", "directed", "gpu", "includeExisting", "root", "topK"],
     graphtyTopCandidatesForNode: ["candidates", "directed", "gpu", "includeExisting", "root", "topK"],
     graphtyTopologicalSort: ["directed", "gpu"],

package/src/algorithms.ts

@@ -1607,12 +1607,13 @@ const IMPLS = {
         adamicAdarScore(c.s, req(c, o.source, "source"), req(c, o.target, "target"), { directed: c.s.directed }),
     commonNeighborsPrediction: (
         c: Ctx,
-        _o: AlgorithmOptions & Omit<LinkPredictionOptions, "directed"> = {},
-    ): PredictedLink[] => links(c, commonNeighborsPrediction(c.s, { ...c.rest, directed: c.s.directed })),
+        _o: AlgorithmOptions & Omit<LinkPredictionOptions, "directed" | "uniquePairs"> = {},
+    ): PredictedLink[] =>
+        links(c, commonNeighborsPrediction(c.s, { ...c.rest, directed: c.s.directed, uniquePairs: true })),
     adamicAdarPrediction: (
         c: Ctx,
-        _o: AlgorithmOptions & Omit<LinkPredictionOptions, "directed"> = {},
-    ): PredictedLink[] => links(c, adamicAdarPrediction(c.s, { ...c.rest, directed: c.s.directed })),
+        _o: AlgorithmOptions & Omit<LinkPredictionOptions, "directed" | "uniquePairs"> = {},
+    ): PredictedLink[] => links(c, adamicAdarPrediction(c.s, { ...c.rest, directed: c.s.directed, uniquePairs: true })),
     commonNeighborsForPairs: (c: Ctx, o: AlgorithmOptions & PairsOptions): number[] =>
         Array.from(commonNeighborsForPairs(c.s, pairsOf(c, o.pairs, "pairs"), { directed: c.s.directed })),
     adamicAdarForPairs: (c: Ctx, o: AlgorithmOptions & PairsOptions): number[] =>