@graphty/algorithms 2.1.1 → 2.2.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (355) hide show
  1. package/README.md +139 -50
  2. package/dist/algorithms.js +15260 -10390
  3. package/dist/algorithms.js.map +1 -1
  4. package/dist/algorithms.standalone.js +26675 -21542
  5. package/dist/algorithms.standalone.js.map +1 -1
  6. package/dist/src/algorithms/centrality/betweenness.d.ts +18 -0
  7. package/dist/src/algorithms/centrality/betweenness.d.ts.map +1 -1
  8. package/dist/src/algorithms/centrality/betweenness.js +40 -1
  9. package/dist/src/algorithms/centrality/betweenness.js.map +1 -1
  10. package/dist/src/algorithms/centrality/closeness.d.ts +20 -0
  11. package/dist/src/algorithms/centrality/closeness.d.ts.map +1 -1
  12. package/dist/src/algorithms/centrality/closeness.js +93 -8
  13. package/dist/src/algorithms/centrality/closeness.js.map +1 -1
  14. package/dist/src/algorithms/centrality/degree.d.ts +9 -0
  15. package/dist/src/algorithms/centrality/degree.d.ts.map +1 -1
  16. package/dist/src/algorithms/centrality/degree.js +18 -0
  17. package/dist/src/algorithms/centrality/degree.js.map +1 -1
  18. package/dist/src/algorithms/centrality/eigenvector.d.ts +10 -0
  19. package/dist/src/algorithms/centrality/eigenvector.d.ts.map +1 -1
  20. package/dist/src/algorithms/centrality/eigenvector.js +29 -0
  21. package/dist/src/algorithms/centrality/eigenvector.js.map +1 -1
  22. package/dist/src/algorithms/centrality/hits.d.ts +9 -0
  23. package/dist/src/algorithms/centrality/hits.d.ts.map +1 -1
  24. package/dist/src/algorithms/centrality/hits.js +23 -0
  25. package/dist/src/algorithms/centrality/hits.js.map +1 -1
  26. package/dist/src/algorithms/centrality/katz.d.ts +9 -0
  27. package/dist/src/algorithms/centrality/katz.d.ts.map +1 -1
  28. package/dist/src/algorithms/centrality/katz.js +31 -0
  29. package/dist/src/algorithms/centrality/katz.js.map +1 -1
  30. package/dist/src/algorithms/centrality/pagerank.d.ts +13 -13
  31. package/dist/src/algorithms/centrality/pagerank.d.ts.map +1 -1
  32. package/dist/src/algorithms/centrality/pagerank.js +47 -10
  33. package/dist/src/algorithms/centrality/pagerank.js.map +1 -1
  34. package/dist/src/algorithms/community/girvan-newman-legacy.d.ts +27 -0
  35. package/dist/src/algorithms/community/girvan-newman-legacy.d.ts.map +1 -0
  36. package/dist/src/algorithms/community/girvan-newman-legacy.js +335 -0
  37. package/dist/src/algorithms/community/girvan-newman-legacy.js.map +1 -0
  38. package/dist/src/algorithms/community/girvan-newman.d.ts +5 -3
  39. package/dist/src/algorithms/community/girvan-newman.d.ts.map +1 -1
  40. package/dist/src/algorithms/community/girvan-newman.js +34 -308
  41. package/dist/src/algorithms/community/girvan-newman.js.map +1 -1
  42. package/dist/src/algorithms/community/label-propagation.d.ts +9 -6
  43. package/dist/src/algorithms/community/label-propagation.d.ts.map +1 -1
  44. package/dist/src/algorithms/community/label-propagation.js +24 -110
  45. package/dist/src/algorithms/community/label-propagation.js.map +1 -1
  46. package/dist/src/algorithms/components/connected.d.ts.map +1 -1
  47. package/dist/src/algorithms/components/connected.js +28 -77
  48. package/dist/src/algorithms/components/connected.js.map +1 -1
  49. package/dist/src/algorithms/mst/kruskal.d.ts.map +1 -1
  50. package/dist/src/algorithms/mst/kruskal.js +59 -3
  51. package/dist/src/algorithms/mst/kruskal.js.map +1 -1
  52. package/dist/src/algorithms/shortest-path/bellman-ford.d.ts.map +1 -1
  53. package/dist/src/algorithms/shortest-path/bellman-ford.js +46 -0
  54. package/dist/src/algorithms/shortest-path/bellman-ford.js.map +1 -1
  55. package/dist/src/algorithms/shortest-path/dijkstra.d.ts.map +1 -1
  56. package/dist/src/algorithms/shortest-path/dijkstra.js +27 -0
  57. package/dist/src/algorithms/shortest-path/dijkstra.js.map +1 -1
  58. package/dist/src/algorithms/shortest-path/floyd-warshall.d.ts +15 -5
  59. package/dist/src/algorithms/shortest-path/floyd-warshall.d.ts.map +1 -1
  60. package/dist/src/algorithms/shortest-path/floyd-warshall.js +97 -107
  61. package/dist/src/algorithms/shortest-path/floyd-warshall.js.map +1 -1
  62. package/dist/src/algorithms/traversal/bfs-unified.d.ts +2 -12
  63. package/dist/src/algorithms/traversal/bfs-unified.d.ts.map +1 -1
  64. package/dist/src/algorithms/traversal/bfs-unified.js +47 -308
  65. package/dist/src/algorithms/traversal/bfs-unified.js.map +1 -1
  66. package/dist/src/algorithms/traversal/bfs-variants.d.ts.map +1 -1
  67. package/dist/src/algorithms/traversal/bfs-variants.js +5 -25
  68. package/dist/src/algorithms/traversal/bfs-variants.js.map +1 -1
  69. package/dist/src/algorithms/traversal/bfs.d.ts +0 -3
  70. package/dist/src/algorithms/traversal/bfs.d.ts.map +1 -1
  71. package/dist/src/algorithms/traversal/bfs.js +0 -4
  72. package/dist/src/algorithms/traversal/bfs.js.map +1 -1
  73. package/dist/src/algorithms/traversal/dfs.d.ts.map +1 -1
  74. package/dist/src/algorithms/traversal/dfs.js +33 -154
  75. package/dist/src/algorithms/traversal/dfs.js.map +1 -1
  76. package/dist/src/clustering/hierarchical-legacy.d.ts +56 -0
  77. package/dist/src/clustering/hierarchical-legacy.d.ts.map +1 -0
  78. package/dist/src/clustering/hierarchical-legacy.js +441 -0
  79. package/dist/src/clustering/hierarchical-legacy.js.map +1 -0
  80. package/dist/src/clustering/hierarchical.d.ts +7 -39
  81. package/dist/src/clustering/hierarchical.d.ts.map +1 -1
  82. package/dist/src/clustering/hierarchical.js +56 -417
  83. package/dist/src/clustering/hierarchical.js.map +1 -1
  84. package/dist/src/clustering/k-core-legacy.d.ts +30 -0
  85. package/dist/src/clustering/k-core-legacy.d.ts.map +1 -0
  86. package/dist/src/clustering/k-core-legacy.js +191 -0
  87. package/dist/src/clustering/k-core-legacy.js.map +1 -0
  88. package/dist/src/clustering/k-core.d.ts +8 -7
  89. package/dist/src/clustering/k-core.d.ts.map +1 -1
  90. package/dist/src/clustering/k-core.js +33 -174
  91. package/dist/src/clustering/k-core.js.map +1 -1
  92. package/dist/src/clustering/mcl-legacy.d.ts +42 -0
  93. package/dist/src/clustering/mcl-legacy.d.ts.map +1 -0
  94. package/dist/src/clustering/mcl-legacy.js +386 -0
  95. package/dist/src/clustering/mcl-legacy.js.map +1 -0
  96. package/dist/src/clustering/mcl.d.ts +9 -32
  97. package/dist/src/clustering/mcl.d.ts.map +1 -1
  98. package/dist/src/clustering/mcl.js +48 -374
  99. package/dist/src/clustering/mcl.js.map +1 -1
  100. package/dist/src/index.d.ts +29 -3
  101. package/dist/src/index.d.ts.map +1 -1
  102. package/dist/src/index.js +2 -1
  103. package/dist/src/index.js.map +1 -1
  104. package/dist/src/indexed/accelerator.d.ts +141 -11
  105. package/dist/src/indexed/accelerator.d.ts.map +1 -1
  106. package/dist/src/indexed/accelerator.js +319 -5
  107. package/dist/src/indexed/accelerator.js.map +1 -1
  108. package/dist/src/indexed/all-pairs.d.ts +59 -0
  109. package/dist/src/indexed/all-pairs.d.ts.map +1 -0
  110. package/dist/src/indexed/all-pairs.js +274 -0
  111. package/dist/src/indexed/all-pairs.js.map +1 -0
  112. package/dist/src/indexed/bellman-ford.d.ts +25 -0
  113. package/dist/src/indexed/bellman-ford.d.ts.map +1 -0
  114. package/dist/src/indexed/bellman-ford.js +59 -0
  115. package/dist/src/indexed/bellman-ford.js.map +1 -0
  116. package/dist/src/indexed/betweenness.d.ts +85 -0
  117. package/dist/src/indexed/betweenness.d.ts.map +1 -0
  118. package/dist/src/indexed/betweenness.js +188 -0
  119. package/dist/src/indexed/betweenness.js.map +1 -0
  120. package/dist/src/indexed/bfs.d.ts +69 -2
  121. package/dist/src/indexed/bfs.d.ts.map +1 -1
  122. package/dist/src/indexed/bfs.js +148 -1
  123. package/dist/src/indexed/bfs.js.map +1 -1
  124. package/dist/src/indexed/bipartite.d.ts +37 -0
  125. package/dist/src/indexed/bipartite.d.ts.map +1 -0
  126. package/dist/src/indexed/bipartite.js +54 -0
  127. package/dist/src/indexed/bipartite.js.map +1 -0
  128. package/dist/src/indexed/closeness.d.ts +49 -0
  129. package/dist/src/indexed/closeness.d.ts.map +1 -0
  130. package/dist/src/indexed/closeness.js +127 -0
  131. package/dist/src/indexed/closeness.js.map +1 -0
  132. package/dist/src/indexed/common-neighbors.d.ts +14 -1
  133. package/dist/src/indexed/common-neighbors.d.ts.map +1 -1
  134. package/dist/src/indexed/common-neighbors.js +24 -14
  135. package/dist/src/indexed/common-neighbors.js.map +1 -1
  136. package/dist/src/indexed/degree.d.ts +19 -0
  137. package/dist/src/indexed/degree.d.ts.map +1 -0
  138. package/dist/src/indexed/degree.js +45 -0
  139. package/dist/src/indexed/degree.js.map +1 -0
  140. package/dist/src/indexed/delta-pagerank.d.ts +145 -0
  141. package/dist/src/indexed/delta-pagerank.d.ts.map +1 -0
  142. package/dist/src/indexed/delta-pagerank.js +428 -0
  143. package/dist/src/indexed/delta-pagerank.js.map +1 -0
  144. package/dist/src/indexed/dfs.d.ts +55 -0
  145. package/dist/src/indexed/dfs.d.ts.map +1 -0
  146. package/dist/src/indexed/dfs.js +146 -0
  147. package/dist/src/indexed/dfs.js.map +1 -0
  148. package/dist/src/indexed/eigenvector.d.ts +48 -0
  149. package/dist/src/indexed/eigenvector.d.ts.map +1 -0
  150. package/dist/src/indexed/eigenvector.js +162 -0
  151. package/dist/src/indexed/eigenvector.js.map +1 -0
  152. package/dist/src/indexed/facade.d.ts +109 -0
  153. package/dist/src/indexed/facade.d.ts.map +1 -0
  154. package/dist/src/indexed/facade.js +204 -0
  155. package/dist/src/indexed/facade.js.map +1 -0
  156. package/dist/src/indexed/flow.d.ts +120 -0
  157. package/dist/src/indexed/flow.d.ts.map +1 -0
  158. package/dist/src/indexed/flow.js +377 -0
  159. package/dist/src/indexed/flow.js.map +1 -0
  160. package/dist/src/indexed/girvan-newman.d.ts +42 -0
  161. package/dist/src/indexed/girvan-newman.d.ts.map +1 -0
  162. package/dist/src/indexed/girvan-newman.js +90 -0
  163. package/dist/src/indexed/girvan-newman.js.map +1 -0
  164. package/dist/src/indexed/grsbm.d.ts +85 -0
  165. package/dist/src/indexed/grsbm.d.ts.map +1 -0
  166. package/dist/src/indexed/grsbm.js +287 -0
  167. package/dist/src/indexed/grsbm.js.map +1 -0
  168. package/dist/src/indexed/hierarchical.d.ts +69 -0
  169. package/dist/src/indexed/hierarchical.d.ts.map +1 -0
  170. package/dist/src/indexed/hierarchical.js +245 -0
  171. package/dist/src/indexed/hierarchical.js.map +1 -0
  172. package/dist/src/indexed/index.d.ts +29 -3
  173. package/dist/src/indexed/index.d.ts.map +1 -1
  174. package/dist/src/indexed/index.js +29 -3
  175. package/dist/src/indexed/index.js.map +1 -1
  176. package/dist/src/indexed/isomorphism.d.ts +42 -0
  177. package/dist/src/indexed/isomorphism.d.ts.map +1 -0
  178. package/dist/src/indexed/isomorphism.js +269 -0
  179. package/dist/src/indexed/isomorphism.js.map +1 -0
  180. package/dist/src/indexed/label-propagation.d.ts +134 -0
  181. package/dist/src/indexed/label-propagation.d.ts.map +1 -0
  182. package/dist/src/indexed/label-propagation.js +486 -0
  183. package/dist/src/indexed/label-propagation.js.map +1 -0
  184. package/dist/src/indexed/leiden.d.ts +52 -0
  185. package/dist/src/indexed/leiden.d.ts.map +1 -0
  186. package/dist/src/indexed/leiden.js +384 -0
  187. package/dist/src/indexed/leiden.js.map +1 -0
  188. package/dist/src/indexed/link-prediction.d.ts +147 -0
  189. package/dist/src/indexed/link-prediction.d.ts.map +1 -0
  190. package/dist/src/indexed/link-prediction.js +317 -0
  191. package/dist/src/indexed/link-prediction.js.map +1 -0
  192. package/dist/src/indexed/markov.d.ts +54 -0
  193. package/dist/src/indexed/markov.d.ts.map +1 -0
  194. package/dist/src/indexed/markov.js +284 -0
  195. package/dist/src/indexed/markov.js.map +1 -0
  196. package/dist/src/indexed/matching.d.ts +53 -0
  197. package/dist/src/indexed/matching.d.ts.map +1 -0
  198. package/dist/src/indexed/matching.js +139 -0
  199. package/dist/src/indexed/matching.js.map +1 -0
  200. package/dist/src/indexed/min-cut.d.ts +48 -0
  201. package/dist/src/indexed/min-cut.d.ts.map +1 -0
  202. package/dist/src/indexed/min-cut.js +175 -0
  203. package/dist/src/indexed/min-cut.js.map +1 -0
  204. package/dist/src/indexed/modularity.d.ts +34 -0
  205. package/dist/src/indexed/modularity.d.ts.map +1 -0
  206. package/dist/src/indexed/modularity.js +74 -0
  207. package/dist/src/indexed/modularity.js.map +1 -0
  208. package/dist/src/indexed/mst.d.ts +29 -1
  209. package/dist/src/indexed/mst.d.ts.map +1 -1
  210. package/dist/src/indexed/mst.js +62 -0
  211. package/dist/src/indexed/mst.js.map +1 -1
  212. package/dist/src/indexed/pagerank.d.ts +29 -6
  213. package/dist/src/indexed/pagerank.d.ts.map +1 -1
  214. package/dist/src/indexed/pagerank.js +107 -11
  215. package/dist/src/indexed/pagerank.js.map +1 -1
  216. package/dist/src/indexed/point-to-point.d.ts +53 -0
  217. package/dist/src/indexed/point-to-point.d.ts.map +1 -0
  218. package/dist/src/indexed/point-to-point.js +173 -0
  219. package/dist/src/indexed/point-to-point.js.map +1 -0
  220. package/dist/src/indexed/scc.d.ts +53 -0
  221. package/dist/src/indexed/scc.d.ts.map +1 -0
  222. package/dist/src/indexed/scc.js +110 -0
  223. package/dist/src/indexed/scc.js.map +1 -0
  224. package/dist/src/indexed/spectral.d.ts +61 -0
  225. package/dist/src/indexed/spectral.d.ts.map +1 -0
  226. package/dist/src/indexed/spectral.js +476 -0
  227. package/dist/src/indexed/spectral.js.map +1 -0
  228. package/dist/src/indexed/structures/bit-set.d.ts +45 -0
  229. package/dist/src/indexed/structures/bit-set.d.ts.map +1 -0
  230. package/dist/src/indexed/structures/bit-set.js +57 -0
  231. package/dist/src/indexed/structures/bit-set.js.map +1 -0
  232. package/dist/src/indexed/structures/max-heap.d.ts +52 -0
  233. package/dist/src/indexed/structures/max-heap.d.ts.map +1 -0
  234. package/dist/src/indexed/structures/max-heap.js +66 -0
  235. package/dist/src/indexed/structures/max-heap.js.map +1 -0
  236. package/dist/src/indexed/structures/min-heap.d.ts +30 -1
  237. package/dist/src/indexed/structures/min-heap.d.ts.map +1 -1
  238. package/dist/src/indexed/structures/min-heap.js +46 -6
  239. package/dist/src/indexed/structures/min-heap.js.map +1 -1
  240. package/dist/src/indexed/structures/ring-queue.d.ts +41 -0
  241. package/dist/src/indexed/structures/ring-queue.d.ts.map +1 -0
  242. package/dist/src/indexed/structures/ring-queue.js +64 -0
  243. package/dist/src/indexed/structures/ring-queue.js.map +1 -0
  244. package/dist/src/indexed/sync.d.ts +50 -0
  245. package/dist/src/indexed/sync.d.ts.map +1 -0
  246. package/dist/src/indexed/sync.js +175 -0
  247. package/dist/src/indexed/sync.js.map +1 -0
  248. package/dist/src/indexed/terahac.d.ts +58 -0
  249. package/dist/src/indexed/terahac.d.ts.map +1 -0
  250. package/dist/src/indexed/terahac.js +244 -0
  251. package/dist/src/indexed/terahac.js.map +1 -0
  252. package/dist/src/indexed/to-snapshot.d.ts +45 -2
  253. package/dist/src/indexed/to-snapshot.d.ts.map +1 -1
  254. package/dist/src/indexed/to-snapshot.js +140 -6
  255. package/dist/src/indexed/to-snapshot.js.map +1 -1
  256. package/dist/src/link-prediction/common-neighbors-legacy.d.ts +71 -0
  257. package/dist/src/link-prediction/common-neighbors-legacy.d.ts.map +1 -0
  258. package/dist/src/link-prediction/common-neighbors-legacy.js +172 -0
  259. package/dist/src/link-prediction/common-neighbors-legacy.js.map +1 -0
  260. package/dist/src/link-prediction/common-neighbors.d.ts +11 -19
  261. package/dist/src/link-prediction/common-neighbors.d.ts.map +1 -1
  262. package/dist/src/link-prediction/common-neighbors.js +56 -123
  263. package/dist/src/link-prediction/common-neighbors.js.map +1 -1
  264. package/dist/src/optimized/direction-optimized-bfs.d.ts +6 -0
  265. package/dist/src/optimized/direction-optimized-bfs.d.ts.map +1 -1
  266. package/dist/src/optimized/direction-optimized-bfs.js +6 -0
  267. package/dist/src/optimized/direction-optimized-bfs.js.map +1 -1
  268. package/dist/src/research/grsbm-legacy.d.ts +82 -0
  269. package/dist/src/research/grsbm-legacy.d.ts.map +1 -0
  270. package/dist/src/research/grsbm-legacy.js +416 -0
  271. package/dist/src/research/grsbm-legacy.js.map +1 -0
  272. package/dist/src/research/grsbm.d.ts +9 -66
  273. package/dist/src/research/grsbm.d.ts.map +1 -1
  274. package/dist/src/research/grsbm.js +67 -391
  275. package/dist/src/research/grsbm.js.map +1 -1
  276. package/dist/src/research/sync-legacy.d.ts +48 -0
  277. package/dist/src/research/sync-legacy.d.ts.map +1 -0
  278. package/dist/src/research/sync-legacy.js +337 -0
  279. package/dist/src/research/sync-legacy.js.map +1 -0
  280. package/dist/src/research/sync.d.ts +10 -32
  281. package/dist/src/research/sync.d.ts.map +1 -1
  282. package/dist/src/research/sync.js +28 -316
  283. package/dist/src/research/sync.js.map +1 -1
  284. package/package.json +4 -3
  285. package/src/algorithms/centrality/betweenness.ts +51 -1
  286. package/src/algorithms/centrality/closeness.ts +112 -12
  287. package/src/algorithms/centrality/degree.ts +19 -0
  288. package/src/algorithms/centrality/eigenvector.ts +34 -0
  289. package/src/algorithms/centrality/hits.ts +24 -0
  290. package/src/algorithms/centrality/katz.ts +32 -0
  291. package/src/algorithms/centrality/pagerank.ts +53 -13
  292. package/src/algorithms/community/girvan-newman-legacy.ts +414 -0
  293. package/src/algorithms/community/girvan-newman.ts +36 -386
  294. package/src/algorithms/community/label-propagation.ts +24 -133
  295. package/src/algorithms/components/connected.ts +28 -95
  296. package/src/algorithms/mst/kruskal.ts +65 -4
  297. package/src/algorithms/shortest-path/bellman-ford.ts +49 -0
  298. package/src/algorithms/shortest-path/dijkstra.ts +29 -0
  299. package/src/algorithms/shortest-path/floyd-warshall.ts +106 -136
  300. package/src/algorithms/traversal/bfs-unified.ts +52 -366
  301. package/src/algorithms/traversal/bfs-variants.ts +5 -28
  302. package/src/algorithms/traversal/bfs.ts +0 -4
  303. package/src/algorithms/traversal/dfs.ts +39 -182
  304. package/src/clustering/hierarchical-legacy.ts +551 -0
  305. package/src/clustering/hierarchical.ts +64 -520
  306. package/src/clustering/k-core-legacy.ts +229 -0
  307. package/src/clustering/k-core.ts +38 -209
  308. package/src/clustering/mcl-legacy.ts +498 -0
  309. package/src/clustering/mcl.ts +46 -479
  310. package/src/index.ts +90 -3
  311. package/src/indexed/accelerator.ts +502 -16
  312. package/src/indexed/all-pairs.ts +342 -0
  313. package/src/indexed/bellman-ford.ts +72 -0
  314. package/src/indexed/betweenness.ts +258 -0
  315. package/src/indexed/bfs.ts +189 -3
  316. package/src/indexed/bipartite.ts +77 -0
  317. package/src/indexed/closeness.ts +160 -0
  318. package/src/indexed/common-neighbors.ts +31 -14
  319. package/src/indexed/degree.ts +55 -0
  320. package/src/indexed/delta-pagerank.ts +513 -0
  321. package/src/indexed/dfs.ts +189 -0
  322. package/src/indexed/eigenvector.ts +202 -0
  323. package/src/indexed/facade.ts +229 -0
  324. package/src/indexed/flow.ts +500 -0
  325. package/src/indexed/girvan-newman.ts +120 -0
  326. package/src/indexed/grsbm.ts +390 -0
  327. package/src/indexed/hierarchical.ts +295 -0
  328. package/src/indexed/index.ts +94 -3
  329. package/src/indexed/isomorphism.ts +305 -0
  330. package/src/indexed/label-propagation.ts +582 -0
  331. package/src/indexed/leiden.ts +436 -0
  332. package/src/indexed/link-prediction.ts +399 -0
  333. package/src/indexed/markov.ts +324 -0
  334. package/src/indexed/matching.ts +192 -0
  335. package/src/indexed/min-cut.ts +201 -0
  336. package/src/indexed/modularity.ts +81 -0
  337. package/src/indexed/mst.ts +79 -1
  338. package/src/indexed/pagerank.ts +128 -15
  339. package/src/indexed/point-to-point.ts +220 -0
  340. package/src/indexed/scc.ts +132 -0
  341. package/src/indexed/spectral.ts +550 -0
  342. package/src/indexed/structures/bit-set.ts +65 -0
  343. package/src/indexed/structures/max-heap.ts +74 -0
  344. package/src/indexed/structures/min-heap.ts +51 -6
  345. package/src/indexed/structures/ring-queue.ts +70 -0
  346. package/src/indexed/sync.ts +229 -0
  347. package/src/indexed/terahac.ts +290 -0
  348. package/src/indexed/to-snapshot.ts +156 -6
  349. package/src/link-prediction/common-neighbors-legacy.ts +252 -0
  350. package/src/link-prediction/common-neighbors.ts +65 -168
  351. package/src/optimized/direction-optimized-bfs.ts +6 -1
  352. package/src/research/grsbm-legacy.ts +586 -0
  353. package/src/research/grsbm.ts +76 -555
  354. package/src/research/sync-legacy.ts +456 -0
  355. package/src/research/sync.ts +30 -431
@@ -1,4 +1,13 @@
1
+ import { INVALID_INDEX } from "@graphty/graph-format";
2
+
1
3
  import { Graph } from "../../core/graph.js";
4
+ import {
5
+ depthFirstSearch as indexedDepthFirstSearch,
6
+ hasCycle,
7
+ topologicalSort as indexedTopologicalSort,
8
+ } from "../../indexed/dfs.js";
9
+ import { orderToTree } from "../../indexed/facade.js";
10
+ import { legacyArcOrder, toTopologySnapshot } from "../../indexed/to-snapshot.js";
2
11
  import type { NodeId, TraversalOptions, TraversalResult } from "../../types/index.js";
3
12
 
4
13
  /**
@@ -28,78 +37,34 @@ export function depthFirstSearch(graph: Graph, startNode: NodeId, options: DFSOp
28
37
  throw new Error(`Start node ${String(startNode)} not found in graph`);
29
38
  }
30
39
 
31
- const visited = new Set<NodeId>();
32
- const order: NodeId[] = [];
33
- const tree = new Map<NodeId, NodeId | null>();
34
-
35
- if (options.recursive) {
40
+ const postOrder = options.preOrder === false;
41
+ if (options.recursive && !postOrder && options.targetNode !== undefined) {
42
+ // The recursive walk skips only the target's subtree and goes on; the port stops at the target.
43
+ const visited = new Set<NodeId>();
44
+ const order: NodeId[] = [];
45
+ const tree = new Map<NodeId, NodeId | null>();
36
46
  dfsRecursive(graph, startNode, visited, order, tree, options, 0);
37
- } else {
38
- dfsIterative(graph, startNode, visited, order, tree, options);
39
- }
40
-
41
- return { visited, order, tree };
42
- }
43
-
44
- /**
45
- * Iterative DFS implementation (safer for browsers)
46
- * @param graph - The input graph to traverse
47
- * @param startNode - The node to start the DFS from
48
- * @param visited - Set to track visited nodes
49
- * @param order - Array to store traversal order
50
- * @param tree - Map to store parent relationships
51
- * @param options - DFS options (recursive mode, pre/post order, etc.)
52
- */
53
- function dfsIterative(
54
- graph: Graph,
55
- startNode: NodeId,
56
- visited: Set<NodeId>,
57
- order: NodeId[],
58
- tree: Map<NodeId, NodeId | null>,
59
- options: DFSOptions,
60
- ): void {
61
- if (options.preOrder === false) {
62
- // For post-order, use a simpler recursive approach to ensure correctness
63
- dfsRecursive(graph, startNode, visited, order, tree, options, 0, null);
64
- return;
65
- }
66
-
67
- const stack: { node: NodeId; parent: NodeId | null; depth: number }[] = [];
68
- stack.push({ node: startNode, parent: null, depth: 0 });
69
-
70
- while (stack.length > 0) {
71
- const current = stack.pop();
72
- if (!current) {
73
- break;
74
- }
75
-
76
- if (!visited.has(current.node)) {
77
- visited.add(current.node);
78
- tree.set(current.node, current.parent);
79
-
80
- // Pre-order processing
81
- order.push(current.node);
82
-
83
- // Call visitor callback if provided
84
- if (options.visitCallback) {
85
- options.visitCallback(current.node, current.depth);
86
- }
87
-
88
- // Early termination if target found
89
- if (options.targetNode !== undefined && current.node === options.targetNode) {
90
- break;
91
- }
92
-
93
- // Add neighbors to stack in reverse order to maintain left-to-right traversal
94
- const neighbors = Array.from(graph.neighbors(current.node));
95
- for (let i = neighbors.length - 1; i >= 0; i--) {
96
- const neighbor = neighbors[i];
97
- if (neighbor !== undefined && !visited.has(neighbor)) {
98
- stack.push({ node: neighbor, parent: current.node, depth: current.depth + 1 });
99
- }
100
- }
101
- }
47
+ return { visited, order, tree };
48
+ }
49
+
50
+ const s = toTopologySnapshot(graph);
51
+ const start = s.ids.indexOf(startNode);
52
+ const arcOrder = legacyArcOrder(graph, s);
53
+ const target = options.targetNode === undefined ? INVALID_INDEX : s.ids.indexOf(options.targetNode);
54
+ // Legacy honours the target in pre-order only, and sets the tree in discovery (pre-)order.
55
+ const pre = indexedDepthFirstSearch(s, start, {
56
+ arcOrder,
57
+ target: postOrder || target === INVALID_INDEX ? undefined : target,
58
+ });
59
+ const tree = orderToTree(s.ids, pre.order, pre.parent);
60
+ const visitOrder = postOrder ? indexedDepthFirstSearch(s, start, { arcOrder, order: "post" }).order : pre.order;
61
+ const order: NodeId[] = [];
62
+ for (const i of visitOrder) {
63
+ const id = s.ids.idOf(i);
64
+ order.push(id);
65
+ options.visitCallback?.(id, pre.depth[i]);
102
66
  }
67
+ return { visited: new Set(tree.keys()), order, tree };
103
68
  }
104
69
 
105
70
  /**
@@ -163,79 +128,7 @@ function dfsRecursive(
163
128
  * @returns True if the graph contains a cycle, false otherwise
164
129
  */
165
130
  export function hasCycleDFS(graph: Graph): boolean {
166
- const visited = new Set<NodeId>();
167
-
168
- // Check each unvisited node for cycles
169
- for (const node of Array.from(graph.nodes())) {
170
- if (!visited.has(node.id)) {
171
- if (graph.isDirected) {
172
- const recursionStack = new Set<NodeId>();
173
- if (hasCycleUtilDirected(graph, node.id, visited, recursionStack)) {
174
- return true;
175
- }
176
- } else {
177
- if (hasCycleUtilUndirected(graph, node.id, visited, null)) {
178
- return true;
179
- }
180
- }
181
- }
182
- }
183
-
184
- return false;
185
- }
186
-
187
- /**
188
- * Utility function for cycle detection in directed graphs
189
- * @param graph - The directed graph to check
190
- * @param node - Current node being visited
191
- * @param visited - Set of all visited nodes
192
- * @param recursionStack - Set of nodes in the current recursion path
193
- * @returns True if a cycle is found, false otherwise
194
- */
195
- function hasCycleUtilDirected(graph: Graph, node: NodeId, visited: Set<NodeId>, recursionStack: Set<NodeId>): boolean {
196
- visited.add(node);
197
- recursionStack.add(node);
198
-
199
- // Check all neighbors
200
- for (const neighbor of Array.from(graph.neighbors(node))) {
201
- if (!visited.has(neighbor)) {
202
- if (hasCycleUtilDirected(graph, neighbor, visited, recursionStack)) {
203
- return true;
204
- }
205
- } else if (recursionStack.has(neighbor)) {
206
- // Back edge found - cycle detected
207
- return true;
208
- }
209
- }
210
-
211
- recursionStack.delete(node);
212
- return false;
213
- }
214
-
215
- /**
216
- * Utility function for cycle detection in undirected graphs
217
- * @param graph - The undirected graph to check
218
- * @param node - Current node being visited
219
- * @param visited - Set of all visited nodes
220
- * @param parent - Parent node of the current node
221
- * @returns True if a cycle is found, false otherwise
222
- */
223
- function hasCycleUtilUndirected(graph: Graph, node: NodeId, visited: Set<NodeId>, parent: NodeId | null): boolean {
224
- visited.add(node);
225
-
226
- // Check all neighbors
227
- for (const neighbor of Array.from(graph.neighbors(node))) {
228
- if (!visited.has(neighbor)) {
229
- if (hasCycleUtilUndirected(graph, neighbor, visited, node)) {
230
- return true;
231
- }
232
- } else if (neighbor !== parent) {
233
- // Found a visited node that's not the parent - cycle detected
234
- return true;
235
- }
236
- }
237
-
238
- return false;
131
+ return hasCycle(toTopologySnapshot(graph));
239
132
  }
240
133
 
241
134
  /**
@@ -247,45 +140,9 @@ export function topologicalSort(graph: Graph): NodeId[] | null {
247
140
  if (!graph.isDirected) {
248
141
  throw new Error("Topological sort requires a directed graph");
249
142
  }
250
-
251
- // First check if graph has cycles
252
- if (hasCycleDFS(graph)) {
253
- return null; // Cannot topologically sort a graph with cycles
254
- }
255
-
256
- const visited = new Set<NodeId>();
257
- const stack: NodeId[] = [];
258
-
259
- // Perform DFS from each unvisited node
260
- for (const node of Array.from(graph.nodes())) {
261
- if (!visited.has(node.id)) {
262
- topologicalSortUtil(graph, node.id, visited, stack);
263
- }
264
- }
265
-
266
- // Return nodes in reverse order of finishing times
267
- return stack.reverse();
268
- }
269
-
270
- /**
271
- * Utility function for topological sorting
272
- * @param graph - The directed graph being sorted
273
- * @param node - Current node being visited
274
- * @param visited - Set of visited nodes
275
- * @param stack - Stack to store nodes in reverse topological order
276
- */
277
- function topologicalSortUtil(graph: Graph, node: NodeId, visited: Set<NodeId>, stack: NodeId[]): void {
278
- visited.add(node);
279
-
280
- // Visit all neighbors first
281
- for (const neighbor of Array.from(graph.neighbors(node))) {
282
- if (!visited.has(neighbor)) {
283
- topologicalSortUtil(graph, neighbor, visited, stack);
284
- }
285
- }
286
-
287
- // Add current node to stack after visiting all neighbors
288
- stack.push(node);
143
+ const s = toTopologySnapshot(graph);
144
+ const order = indexedTopologicalSort(s, { arcOrder: legacyArcOrder(graph, s) });
145
+ return order === null ? null : Array.from(order, (i) => s.ids.idOf(i));
289
146
  }
290
147
 
291
148
  /**