@graphty/algorithms 1.2.0 → 1.3.1

package/dist/src/optimized/graph-adapter.d.ts

@@ -0,0 +1,62 @@
+import type { Graph } from "../core/graph.js";
+import type { NodeId } from "../types/index.js";
+import { CSRGraph, type ReadonlyGraph } from "./csr-graph.js";
+/**
+ * Adapter to convert standard Graph to CSR format
+ *
+ * Provides transparent conversion while maintaining API compatibility
+ */
+export declare class GraphAdapter<TNodeId = NodeId> implements ReadonlyGraph<TNodeId> {
+    private csrGraph;
+    constructor(graph: Graph | ReadonlyGraph<TNodeId>);
+    /**
+   * Convert standard graph to CSR format
+   */
+    private convertToCSR;
+    nodeCount(): number;
+    edgeCount(): number;
+    hasNode(nodeId: TNodeId): boolean;
+    hasEdge(source: TNodeId, target: TNodeId): boolean;
+    neighbors(nodeId: TNodeId): IterableIterator<TNodeId>;
+    outDegree(nodeId: TNodeId): number;
+    nodes(): IterableIterator<TNodeId>;
+    /**
+   * Get the underlying CSR graph
+   */
+    getCSRGraph(): CSRGraph<TNodeId>;
+}
+/**
+ * Configuration for graph algorithm optimizations
+ */
+export interface GraphAlgorithmConfig {
+    useDirectionOptimizedBFS?: boolean;
+    useCSRFormat?: boolean;
+    useBitPackedStructures?: boolean;
+    bfsAlpha?: number;
+    bfsBeta?: number;
+    preallocateSize?: number;
+    enableCaching?: boolean;
+}
+/**
+ * Configure optimizations globally
+ * @deprecated This function is a no-op and will be removed in a future version
+ */
+export declare function configureOptimizations(_config: GraphAlgorithmConfig): void;
+/**
+ * Get current configuration
+ * @deprecated This function returns empty config and will be removed in a future version
+ */
+export declare function getOptimizationConfig(): GraphAlgorithmConfig;
+/**
+ * Check if a graph is already in CSR format
+ */
+export declare function isCSRGraph<TNodeId = NodeId>(graph: unknown): graph is CSRGraph<TNodeId>;
+/**
+ * Convert any graph to CSR format
+ */
+export declare function toCSRGraph<TNodeId = NodeId>(graph: Graph | ReadonlyGraph<TNodeId> | CSRGraph<TNodeId>): CSRGraph<TNodeId>;
+/**
+ * Create an optimized graph from nodes and edges
+ */
+export declare function createOptimizedGraph<TNodeId = NodeId>(nodes: TNodeId[], edges: [TNodeId, TNodeId, number?][]): CSRGraph<TNodeId>;
+//# sourceMappingURL=graph-adapter.d.ts.map

package/dist/src/optimized/graph-adapter.d.ts.map

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package/dist/src/optimized/graph-adapter.js

@@ -0,0 +1,146 @@
+import { CSRGraph } from "./csr-graph.js";
+/**
+ * Adapter to convert standard Graph to CSR format
+ *
+ * Provides transparent conversion while maintaining API compatibility
+ */
+export class GraphAdapter {
+    constructor(graph) {
+        // Check if already a CSRGraph
+        if (graph instanceof CSRGraph) {
+            this.csrGraph = graph;
+        }
+        else {
+            // Convert to CSR format
+            this.csrGraph = this.convertToCSR(graph);
+        }
+    }
+    /**
+   * Convert standard graph to CSR format
+   */
+    convertToCSR(graph) {
+        const adjacencyList = new Map();
+        const weights = new Map();
+        // Handle both Graph and ReadonlyGraph interfaces
+        if ("nodes" in graph && typeof graph.nodes === "function") {
+            // Build adjacency list from Graph
+            for (const node of graph.nodes()) {
+                const nodeId = node.id;
+                const neighbors = [];
+                const graphTyped = graph;
+                for (const neighborId of graphTyped.neighbors(nodeId)) {
+                    neighbors.push(neighborId);
+                    // Get edge weight if available
+                    if ("getEdge" in graph && typeof graph.getEdge === "function") {
+                        const edge = graphTyped.getEdge(nodeId, neighborId);
+                        if (edge?.weight !== undefined) {
+                            weights.set(`${String(nodeId)}-${String(neighborId)}`, edge.weight);
+                        }
+                    }
+                }
+                adjacencyList.set(nodeId, neighbors);
+            }
+        }
+        else if ("nodeIds" in graph && typeof graph.nodeIds === "function") {
+            const readonlyGraph = graph;
+            for (const nodeId of readonlyGraph.nodeIds()) {
+                adjacencyList.set(nodeId, []);
+            }
+            // Build adjacency from edges
+            if ("edges" in readonlyGraph && typeof readonlyGraph.edges === "function") {
+                for (const edge of readonlyGraph.edges()) {
+                    const neighbors = adjacencyList.get(edge.source);
+                    if (neighbors) {
+                        neighbors.push(edge.target);
+                        if (edge.weight !== undefined) {
+                            weights.set(`${String(edge.source)}-${String(edge.target)}`, edge.weight);
+                        }
+                    }
+                }
+            }
+        }
+        return new CSRGraph(adjacencyList, weights.size > 0 ? weights : undefined);
+    }
+    // Delegate all methods to CSR implementation
+    nodeCount() {
+        return this.csrGraph.nodeCount();
+    }
+    edgeCount() {
+        return this.csrGraph.edgeCount();
+    }
+    hasNode(nodeId) {
+        return this.csrGraph.hasNode(nodeId);
+    }
+    hasEdge(source, target) {
+        return this.csrGraph.hasEdge(source, target);
+    }
+    neighbors(nodeId) {
+        return this.csrGraph.neighbors(nodeId);
+    }
+    outDegree(nodeId) {
+        return this.csrGraph.outDegree(nodeId);
+    }
+    nodes() {
+        return this.csrGraph.nodes();
+    }
+    /**
+   * Get the underlying CSR graph
+   */
+    getCSRGraph() {
+        return this.csrGraph;
+    }
+}
+/**
+ * Configure optimizations globally
+ * @deprecated This function is a no-op and will be removed in a future version
+ */
+// eslint-disable-next-line @typescript-eslint/no-unused-vars
+export function configureOptimizations(_config) {
+    // No-op for backward compatibility
+}
+/**
+ * Get current configuration
+ * @deprecated This function returns empty config and will be removed in a future version
+ */
+export function getOptimizationConfig() {
+    return {};
+}
+/**
+ * Check if a graph is already in CSR format
+ */
+export function isCSRGraph(graph) {
+    return graph instanceof CSRGraph;
+}
+/**
+ * Convert any graph to CSR format
+ */
+export function toCSRGraph(graph) {
+    if (isCSRGraph(graph)) {
+        return graph;
+    }
+    const adapter = new GraphAdapter(graph);
+    return adapter.getCSRGraph();
+}
+/**
+ * Create an optimized graph from nodes and edges
+ */
+export function createOptimizedGraph(nodes, edges) {
+    const adjacencyList = new Map();
+    const weights = new Map();
+    // Initialize nodes
+    for (const node of nodes) {
+        adjacencyList.set(node, []);
+    }
+    // Add edges
+    for (const [source, target, weight] of edges) {
+        const neighbors = adjacencyList.get(source);
+        if (neighbors) {
+            neighbors.push(target);
+            if (weight !== undefined) {
+                weights.set(`${String(source)}-${String(target)}`, weight);
+            }
+        }
+    }
+    return new CSRGraph(adjacencyList, weights.size > 0 ? weights : undefined);
+}
+//# sourceMappingURL=graph-adapter.js.map

package/dist/src/optimized/graph-adapter.js.map

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package/dist/src/optimized/index.d.ts

@@ -0,0 +1,14 @@
+/**
+ * Optimized graph algorithm implementations
+ *
+ * High-performance implementations using:
+ * - Direction-Optimized BFS
+ * - Compressed Sparse Row (CSR) format
+ * - Bit-packed data structures
+ */
+export { configureOptimizations, getOptimizationConfig, type GraphAlgorithmConfig, } from "./graph-adapter.js";
+export { CompactDistanceArray, GraphBitSet, VisitedBitArray } from "./bit-packed.js";
+export { CSRGraph } from "./csr-graph.js";
+export { DirectionOptimizedBFS } from "./direction-optimized-bfs.js";
+export { createOptimizedGraph, isCSRGraph, toCSRGraph } from "./graph-adapter.js";
+//# sourceMappingURL=index.d.ts.map

package/dist/src/optimized/index.d.ts.map

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package/dist/src/optimized/index.js

@@ -0,0 +1,28 @@
+/**
+ * Optimized graph algorithm implementations
+ *
+ * High-performance implementations using:
+ * - Direction-Optimized BFS
+ * - Compressed Sparse Row (CSR) format
+ * - Bit-packed data structures
+ */
+// Configuration and optimization control
+export { configureOptimizations, getOptimizationConfig, } from "./graph-adapter.js";
+// Note: The main BFS functions in algorithms/traversal/bfs.ts automatically
+// use these optimizations for large graphs (>10k nodes) when optimizations are enabled.
+// No manual configuration needed - just use breadthFirstSearch, shortestPathBFS, etc.
+//
+// The previously exported bfsOptimized, shortestPathBFSOptimized, and
+// singleSourceShortestPathBFSOptimized functions have been removed since they
+// are no longer needed. All optimization happens automatically.
+// BFS optimization functions have been removed. The main BFS functions
+// (breadthFirstSearch, shortestPathBFS, singleSourceShortestPathBFS)
+// in algorithms/traversal/bfs.ts now automatically use optimizations
+// for large graphs without requiring manual configuration.
+// Export data structures for advanced users
+export { CompactDistanceArray, GraphBitSet, VisitedBitArray } from "./bit-packed.js";
+export { CSRGraph } from "./csr-graph.js";
+export { DirectionOptimizedBFS } from "./direction-optimized-bfs.js";
+// Export utilities
+export { createOptimizedGraph, isCSRGraph, toCSRGraph } from "./graph-adapter.js";
+//# sourceMappingURL=index.js.map

package/dist/src/optimized/index.js.map

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package/dist/src/research/grsbm.d.ts.map

@@ -1 +1 @@
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package/dist/src/research/grsbm.js

@@ -1,3 +1,4 @@
+import { SeededRandom } from "../utils/math-utilities.js";
 /**
  * GRSBM - Greedy Recursive Spectral Bisection with Modularity
  *
@@ -15,7 +16,9 @@ export function grsbm(graph, config = {}) {
     const { maxDepth = 10, minClusterSize = 2, // Reduced default to allow more splits
     numEigenvectors = 2, tolerance = 1e-6, maxIterations = 100, seed = 42, } = config;
     // Set random seed for reproducibility
-    Math.random = seedRandom(seed);
+    const rng = SeededRandom.createGenerator(seed);
+    const originalRandom = Math.random;
+    Math.random = rng;
     const nodes = Array.from(graph.nodes());
     const nodeCount = nodes.length;
     if (nodeCount === 0) {
@@ -118,6 +121,8 @@ export function grsbm(graph, config = {}) {
         }
     }
     assignClusterIds(root);
+    // Restore original random function
+    Math.random = originalRandom;
     return {
         root,
         clusters,
@@ -395,17 +400,4 @@ function calculateModularity(graph, assignment) {
     }
     return modularity;
 }
-/**
- * Simple seeded random number generator for reproducibility
- */
-function seedRandom(seed) {
-    const m = 0x80000000; // 2**31
-    const a = 1103515245;
-    const c = 12345;
-    seed = seed % m;
-    return function () {
-        seed = ((a * seed) + c) % m;
-        return seed / (m - 1);
-    };
-}
 //# sourceMappingURL=grsbm.js.map

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package/dist/src/research/sync.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"sync.d.ts","sourceRoot":"","sources":["../../../src/research/sync.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAC,KAAK,EAAC,MAAM,kBAAkB,CAAC;AAC5C,OAAO,KAAK,EAAC,MAAM,EAAC,MAAM,mBAAmB,CAAC;AAE9C;;GAEG;AACH,MAAM,WAAW,UAAU;IACvB,iCAAiC;IACjC,WAAW,EAAE,MAAM,CAAC;IACpB,mDAAmD;IACnD,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,4BAA4B;IAC5B,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,sCAAsC;IACtC,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,qCAAqC;IACrC,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,+BAA+B;IAC/B,MAAM,CAAC,EAAE,MAAM,CAAC;CACnB;AAED;;GAEG;AACH,MAAM,WAAW,UAAU;IACvB,wCAAwC;IACxC,QAAQ,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAC9B,uBAAuB;IACvB,IAAI,EAAE,MAAM,CAAC;IACb,qCAAqC;IACrC,UAAU,EAAE,MAAM,CAAC;IACnB,+CAA+C;IAC/C,UAAU,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,CAAC;IAClC,sCAAsC;IACtC,SAAS,EAAE,OAAO,CAAC;CACtB;AAED;;;;;;;;;;;;GAYG;AACH,wBAAgB,cAAc,CAAC,KAAK,EAAE,KAAK,EAAE,MAAM,EAAE,UAAU,GAAG,UAAU,CAkI3E"}
+{"version":3,"file":"sync.d.ts","sourceRoot":"","sources":["../../../src/research/sync.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAC,KAAK,EAAC,MAAM,kBAAkB,CAAC;AAC5C,OAAO,KAAK,EAAC,MAAM,EAAC,MAAM,mBAAmB,CAAC;AAG9C;;GAEG;AACH,MAAM,WAAW,UAAU;IACvB,iCAAiC;IACjC,WAAW,EAAE,MAAM,CAAC;IACpB,mDAAmD;IACnD,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,4BAA4B;IAC5B,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,sCAAsC;IACtC,IAAI,CAAC,EAAE,MAAM,CAAC;IACd,qCAAqC;IACrC,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,+BAA+B;IAC/B,MAAM,CAAC,EAAE,MAAM,CAAC;CACnB;AAED;;GAEG;AACH,MAAM,WAAW,UAAU;IACvB,wCAAwC;IACxC,QAAQ,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC;IAC9B,uBAAuB;IACvB,IAAI,EAAE,MAAM,CAAC;IACb,qCAAqC;IACrC,UAAU,EAAE,MAAM,CAAC;IACnB,+CAA+C;IAC/C,UAAU,EAAE,GAAG,CAAC,MAAM,EAAE,MAAM,EAAE,CAAC,CAAC;IAClC,sCAAsC;IACtC,SAAS,EAAE,OAAO,CAAC;CACtB;AAED;;;;;;;;;;;;GAYG;AACH,wBAAgB,cAAc,CAAC,KAAK,EAAE,KAAK,EAAE,MAAM,EAAE,UAAU,GAAG,UAAU,CAmI3E"}

package/dist/src/research/sync.js

@@ -1,3 +1,4 @@
+import { euclideanDistance, SeededRandom } from "../utils/math-utilities.js";
 /**
  * Synergistic Deep Graph Clustering (SynC) Algorithm
  *
@@ -15,7 +16,8 @@ export function syncClustering(graph, config) {
     const { numClusters, maxIterations = 100, tolerance = 1e-6, seed = 42, learningRate = 0.01, lambda = 0.1, } = config;
     // Set random seed for reproducibility (save original)
     const originalRandom = Math.random;
-    Math.random = seedRandom(seed);
+    const rng = SeededRandom.createGenerator(seed);
+    Math.random = rng;
     const nodes = Array.from(graph.nodes());
     const nodeCount = nodes.length;
     if (nodeCount === 0) {
@@ -311,32 +313,4 @@ function calculateLoss(graph, embeddings, clusters, clusterCenters, lambda) {
     }
     return clusteringLoss + (lambda * reconstructionLoss) + (lambda * regularizationLoss);
 }
-/**
- * Calculate Euclidean distance between two vectors
- */
-function euclideanDistance(a, b) {
-    let sum = 0;
-    for (let i = 0; i < a.length; i++) {
-        const aVal = a[i];
-        const bVal = b[i];
-        if (aVal !== undefined && bVal !== undefined) {
-            const diff = aVal - bVal;
-            sum += diff * diff;
-        }
-    }
-    return Math.sqrt(sum);
-}
-/**
- * Simple seeded random number generator for reproducibility
- */
-function seedRandom(seed) {
-    const m = 0x80000000; // 2**31
-    const a = 1103515245;
-    const c = 12345;
-    seed = seed % m;
-    return function () {
-        seed = ((a * seed) + c) % m;
-        return seed / (m - 1);
-    };
-}
 //# sourceMappingURL=sync.js.map

package/dist/src/research/sync.js.map

@@ -1 +1 @@
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package/dist/src/research/terahac.d.ts

@@ -14,6 +14,8 @@ export interface TeraHACConfig {
     maxNodes?: number;
     /** Use graph structure for distance calculation */
     useGraphDistance?: boolean;
+    /** Custom warning handler (default: console.warn) */
+    onWarning?: (message: string) => void;
 }
 /**
  * Represents a node in the dendrogram/cluster hierarchy

package/dist/src/research/terahac.d.ts.map

@@ -1 +1 @@
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package/dist/src/research/terahac.js

@@ -13,14 +13,18 @@
  * @returns Hierarchical clustering result
  */
 export function teraHAC(graph, config = {}) {
-    const { linkage = "average", numClusters, distanceThreshold, maxNodes = 10000, useGraphDistance = true, } = config;
+    const { linkage = "average", numClusters, distanceThreshold, maxNodes = 10000, useGraphDistance = true, onWarning = console.warn, } = config;
+    // Input validation
+    if (numClusters !== undefined && (numClusters < 1 || !Number.isInteger(numClusters))) {
+        throw new Error("numClusters must be a positive integer");
+    }
     const nodes = Array.from(graph.nodes());
     const nodeCount = nodes.length;
     if (nodeCount === 0) {
         throw new Error("Cannot cluster empty graph");
     }
     if (nodeCount > maxNodes) {
-        console.warn(`Graph has ${String(nodeCount)} nodes, which exceeds maxNodes (${String(maxNodes)}). Performance may be degraded.`);
+        onWarning(`Graph has ${String(nodeCount)} nodes, which exceeds maxNodes (${String(maxNodes)}). Performance may be degraded.`);
     }
     // Initialize each node as its own cluster
     const clusters = new Map();
@@ -45,7 +49,7 @@ export function teraHAC(graph, config = {}) {
     const mergeCandidates = initializeMergeCandidates(clusters, distanceMatrix);
     let dendrogram;
     // Perform agglomerative clustering
-    while (clusters.size > 1) {
+    while (clusters.size > 1 && mergeCandidates.length > 0) {
         // Find closest pair of clusters
         const { cluster1Id, cluster2Id, distance } = findClosestPair(mergeCandidates);
         // Check stopping criteria

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