@graphpilot-oss/graphpilot 0.0.1 → 1.0.0

package/dist/watcher.js

@@ -16,12 +16,12 @@
  * clean for any agent that's also reading the graph over MCP.
  */
 import chokidar from 'chokidar';
-import { realpathSync } from 'node:fs';
-import { resolve, relative } from 'node:path';
+import { realpathSync, statSync } from 'node:fs';
+import { resolve, relative, sep } from 'node:path';
 import { parseFile } from './parser.js';
 import { extractSymbols } from './symbols.js';
 import { extractRawCalls, resolveCallEdges } from './edges.js';
-import { saveGraph, loadGraph, repoIdFor } from './storage.js';
+import { saveGraph, loadGraph, repoIdFor, graphPath } from './storage.js';
 import { readGitInfo } from './git.js';
 import { indexDirectory } from './indexer.js';
 import { validateRootPath, MAX_FILES_PER_INDEX } from './validation.js';
@@ -63,6 +63,9 @@ export class GraphWatcher {
     watcher = null;
     log;
     awaitStabilityMs;
+    /** mtime + size of graph.json after the last save this process performed. */
+    lastSavedMtimeMs = 0;
+    lastSavedSizeBytes = 0;
     /**
      * Serializes the update queue so chokidar bursts (multiple `change`
      * events in 200ms) don't race each other into a torn graph.
@@ -84,6 +87,14 @@ export class GraphWatcher {
         if (loaded) {
             this.graph = loaded;
             this.rawCalls = this.deriveRawCalls(loaded.edges);
+            try {
+                const st = statSync(graphPath(this.absRoot));
+                this.lastSavedMtimeMs = st.mtimeMs;
+                this.lastSavedSizeBytes = st.size;
+            }
+            catch {
+                // best-effort baseline
+            }
         }
         else {
             // No existing index — caller is expected to `start()`, which will
@@ -142,10 +153,15 @@ export class GraphWatcher {
     async applyUpdate(absFilePath, kind = 'change') {
         if (!isWatchableFile(absFilePath))
             return null;
-        if (!absFilePath.startsWith(this.absRoot))
+        if (absFilePath !== this.absRoot && !absFilePath.startsWith(this.absRoot + sep))
             return null;
+        // Detect mtime drift — reload before computing the delta so we apply
+        // the edit on top of the freshest known graph, not a stale in-memory one.
+        this.reloadIfDrifted();
         const start = Date.now();
-        const rel = relative(this.absRoot, absFilePath);
+        // Normalize to POSIX separators so paths stored in graph.json are always
+        // forward-slash on every OS (same convention as indexer.ts).
+        const rel = relative(this.absRoot, absFilePath).split(sep).join('/');
         const symbolsBefore = this.graph.symbols.length;
         const edgesBefore = this.graph.edges.length;
         // 1. Remove existing symbols + raw calls from this file
@@ -186,10 +202,11 @@ export class GraphWatcher {
     }
     /** Drop everything that came from a deleted file. */
     async applyDeletion(absFilePath) {
-        if (!absFilePath.startsWith(this.absRoot))
+        if (absFilePath !== this.absRoot && !absFilePath.startsWith(this.absRoot + sep))
             return null;
+        this.reloadIfDrifted();
         const start = Date.now();
-        const rel = relative(this.absRoot, absFilePath);
+        const rel = relative(this.absRoot, absFilePath).split(sep).join('/');
         const symbolsBefore = this.graph.symbols.length;
         const edgesBefore = this.graph.edges.length;
         const keptSymbols = this.graph.symbols.filter((s) => s.file !== rel);
@@ -226,6 +243,14 @@ export class GraphWatcher {
         };
         this.rawCalls = this.deriveRawCalls(result.edges);
         saveGraph(this.graph);
+        try {
+            const st = statSync(graphPath(this.absRoot));
+            this.lastSavedMtimeMs = st.mtimeMs;
+            this.lastSavedSizeBytes = st.size;
+        }
+        catch {
+            // best-effort
+        }
     }
     /** Read-only accessor, mainly for tests + diagnostics. */
     get currentGraph() {
@@ -251,6 +276,36 @@ export class GraphWatcher {
     async handleDeletion(abs) {
         await this.applyDeletion(abs);
     }
+    /**
+     * If graph.json was written by another process since we last saved, reload
+     * it into memory so the next delta is applied on top of the fresh state.
+     * This handles gp_index from an agent, a parallel CLI re-index, or a
+     * git checkout while watch is running.
+     */
+    reloadIfDrifted() {
+        if (this.lastSavedMtimeMs === 0)
+            return; // no baseline yet
+        try {
+            const st = statSync(graphPath(this.absRoot));
+            // Check both mtime and size: mtime alone has 1-second resolution on some
+            // Windows filesystems (FAT/exFAT, some container mounts), so a rapid
+            // external write within the same second would not be detected. Adding the
+            // size check catches content changes even when the clock doesn't advance.
+            if (st.mtimeMs === this.lastSavedMtimeMs && st.size === this.lastSavedSizeBytes)
+                return;
+            const fresh = loadGraph(this.absRoot);
+            if (fresh) {
+                this.graph = fresh;
+                this.rawCalls = this.deriveRawCalls(fresh.edges);
+                this.lastSavedMtimeMs = st.mtimeMs;
+                this.lastSavedSizeBytes = st.size;
+                this.log(`Detected external re-index (${fresh.symbolCount} symbols); reloaded before applying delta.`);
+            }
+        }
+        catch {
+            // best-effort — if statSync fails the file is gone; next save will recreate it
+        }
+    }
     /**
      * Apply a new (symbols, rawCalls) state: re-resolve edges, update the
      * graph object, save atomically.
@@ -278,6 +333,14 @@ export class GraphWatcher {
         };
         this.rawCalls = rawCalls;
         saveGraph(this.graph);
+        try {
+            const st = statSync(graphPath(this.absRoot));
+            this.lastSavedMtimeMs = st.mtimeMs;
+            this.lastSavedSizeBytes = st.size;
+        }
+        catch {
+            // best-effort
+        }
     }
     finalize(file, kind, symbolsBefore, edgesBefore, start) {
         return {

package/dist/watcher.js.map

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package/examples/README.md

@@ -0,0 +1,105 @@
+# GraphPilot — Editor & Agent Examples
+
+Ready-to-paste configurations for every MCP-compatible coding agent we've tested.
+
+Each subfolder follows the same shape:
+
+- `README.md` — step-by-step install for that client (the file you're skimming this for)
+- A sample config file (`.claude.json`, `mcp.json`, `cline_mcp_settings.json`, etc.) you can copy verbatim and edit the path in
+- Where the client supports it: a `CLAUDE.md` / `.cursorrules` / equivalent routing template that nudges the agent to use GraphPilot tools automatically
+
+## Pick your client
+
+| Client          | Folder                                      | Config file location                                                                                            |
+| --------------- | ------------------------------------------- | --------------------------------------------------------------------------------------------------------------- |
+| Claude Code     | [`claude-code/`](claude-code/)              | `~/.claude.json`                                                                                                |
+| Cursor          | [`cursor/`](cursor/)                        | `~/.cursor/mcp.json`                                                                                            |
+| Cline (VS Code) | [`cline/`](cline/)                          | `~/Library/Application Support/Code/User/globalStorage/saoudrizwan.claude-dev/settings/cline_mcp_settings.json` |
+| Windsurf        | [`windsurf/`](windsurf/)                    | `~/.codeium/windsurf/mcp_config.json`                                                                           |
+| Continue.dev    | [`continue/`](continue/)                    | `~/.continue/config.json`                                                                                       |
+| Anything else   | [`docs/mcp-setup.md`](../docs/mcp-setup.md) | n/a — generic stdio MCP instructions                                                                            |
+
+## Two ways GraphPilot can be launched
+
+Every example shows both forms. Pick whichever matches how you installed GraphPilot.
+
+### A) Local build (pre-npm, contributors, dev mode)
+
+```bash
+git clone https://github.com/graphpilot-oss/graphpilot.git
+cd graphpilot && pnpm install && pnpm build
+```
+
+Then point your client at:
+
+```jsonc
+{
+  "command": "node",
+  "args": ["/absolute/path/to/graphpilot/dist/cli.js", "mcp"],
+}
+```
+
+> **Replace `/absolute/path/to/graphpilot/`** with the real path on your machine. Tilde (`~`) is _not_ expanded by most MCP clients — use the full absolute path.
+
+### B) Once v0.1.0 ships to npm
+
+```jsonc
+{
+  "command": "npx",
+  "args": ["graphpilot", "mcp"],
+}
+```
+
+Or install globally and reference by name:
+
+```bash
+npm install -g @graphpilot-oss/graphpilot
+```
+
+## Cross-platform notes
+
+| Platform | Path style                                                                      |
+| -------- | ------------------------------------------------------------------------------- |
+| macOS    | `/Users/<you>/code/graphpilot/dist/cli.js`                                      |
+| Linux    | `/home/<you>/code/graphpilot/dist/cli.js`                                       |
+| Windows  | `C:\\Users\\<you>\\code\\graphpilot\\dist\\cli.js` (escape backslashes in JSON) |
+
+On Windows in particular, **use double-backslashes in JSON paths** or use forward slashes — both work, single backslashes don't.
+
+## Verifying the connection
+
+After editing the config and **fully restarting** the client (quitting completely, not just closing the window), trigger the client's MCP listing:
+
+- **Claude Code:** type `/mcp` in chat
+- **Cursor:** Settings → MCP
+- **Cline:** the Cline panel → MCP Servers
+- **Windsurf:** Cascade panel → MCP tools
+- **Continue:** Settings → MCP Servers
+
+You should see `graphpilot` with **4 tools** (`gp_index`, `gp_recall`, `gp_callers`, `gp_impact`). If not, see [`docs/mcp-setup.md`](../docs/mcp-setup.md#troubleshooting).
+
+## Indexing your first repo
+
+Once the MCP server is connected, ask the agent to index your project — or run it directly:
+
+```bash
+node /abs/path/to/graphpilot/dist/cli.js index /path/to/your/repo
+```
+
+Then keep the index fresh as you edit:
+
+```bash
+node /abs/path/to/graphpilot/dist/cli.js watch /path/to/your/repo
+```
+
+Watch mode produces sub-10 ms incremental updates on every save. The on-disk `graph.json` is rewritten atomically — the agent always sees a consistent view, even mid-edit.
+
+## End-to-end smoke test
+
+From inside the agent:
+
+```text
+Use graphpilot's gp_recall tool to list symbols in this repo.
+```
+
+If the response includes symbol results — the wire is healthy.

package/examples/claude-code/README.md

@@ -0,0 +1,125 @@
+# Claude Code (Anthropic) + GraphPilot
+
+Step-by-step install of GraphPilot as an MCP server inside Claude Code.
+
+## 1. Build GraphPilot
+
+```bash
+git clone https://github.com/graphpilot-oss/graphpilot.git
+cd graphpilot && pnpm install && pnpm build
+```
+
+The compiled CLI lands at `dist/cli.js`. Verify:
+
+```bash
+node dist/cli.js --help
+```
+
+## 2. Edit `~/.claude.json`
+
+Create the file if it doesn't exist. Add the `mcpServers` block:
+
+```jsonc
+{
+  "mcpServers": {
+    "graphpilot": {
+      "command": "node",
+      "args": ["/absolute/path/to/graphpilot/dist/cli.js", "mcp"],
+    },
+  },
+}
+```
+
+A copy-paste-ready sample is in [`claude_config.json`](./claude_config.json). Replace `/absolute/path/to/graphpilot/` with the real path on your machine.
+
+Once v0.1.0 ships to npm, you can simplify to:
+
+```jsonc
+{
+  "mcpServers": {
+    "graphpilot": {
+      "command": "npx",
+      "args": ["graphpilot", "mcp"],
+    },
+  },
+}
+```
+
+## 3. Fully restart Claude Code
+
+Quit completely — don't just close the window. `~/.claude.json` is read on launch only.
+
+## 4. Verify the wire
+
+In any Claude Code session, type:
+
+```text
+/mcp
+```
+
+You should see:
+
+```
+graphpilot
+  4 tools: gp_index, gp_recall, gp_callers, gp_impact
+```
+
+If the server doesn't appear, run `node /abs/path/to/graphpilot/dist/cli.js mcp` in a terminal and check stderr for the error — most config bugs surface immediately.
+
+## 5. Index a repo
+
+From the terminal of any TS/JS project:
+
+```bash
+node /abs/path/to/graphpilot/dist/cli.js index .
+```
+
+Or ask Claude:
+
+```text
+Use graphpilot's gp_index tool on this repo.
+```
+
+## 6. Make Claude reach for GraphPilot automatically
+
+Copy [`CLAUDE.md`](./CLAUDE.md) (the routing template in this folder) into the **root of the repo you indexed**. Restart Claude one more time. From that point on, structural questions route to GraphPilot without you having to say _"use graphpilot to…"_.
+
+Try:
+
+```text
+Who calls authenticate in this repo?
+
+What breaks if I rename parseFile?
+
+Find every function whose name contains 'parse'.
+```
+
+You should see a `Calling graphpilot/gp_*` line in the response — that's the tool firing.
+
+## 7. Keep the index fresh (optional)
+
+In a side terminal:
+
+```bash
+node /abs/path/to/graphpilot/dist/cli.js watch /path/to/your/repo
+```
+
+Sub-10 ms incremental updates on every save. Ctrl+C to stop.
+
+## Troubleshooting
+
+| Symptom                                   | Fix                                                                                                           |
+| ----------------------------------------- | ------------------------------------------------------------------------------------------------------------- |
+| `/mcp` doesn't list `graphpilot`          | Edits to `~/.claude.json` don't hot-reload. Fully quit Claude Code and relaunch.                              |
+| Tools list but every call says "no index" | Path mismatch — pass an explicit `path: "/abs/repo"` argument, or index from the same `cwd` Claude uses.      |
+| `pnpm install` fails on native modules    | `pnpm approve-builds --all && pnpm rebuild`. On Node 23+, drop to Node 22 LTS — tree-sitter is finicky on 23. |
+
+Anything not listed: [open an issue](https://github.com/graphpilot-oss/graphpilot/issues) with the stderr from `node dist/cli.js mcp`.
+
+## Files in this folder
+
+| File                                         | Purpose                                                                                    |
+| -------------------------------------------- | ------------------------------------------------------------------------------------------ |
+| [`README.md`](./README.md)                   | This walkthrough                                                                           |
+| [`claude_config.json`](./claude_config.json) | Sample `~/.claude.json` content — copy the `mcpServers` block into yours                   |
+| [`CLAUDE.md`](./CLAUDE.md)                   | Drop-in routing template — copy to your indexed repo's root so Claude auto-uses GraphPilot |

package/examples/claude-code/claude-routing.md

@@ -0,0 +1,102 @@
+# GraphPilot + Claude Code
+
+This routing template directs structural code questions to the `graphpilot` MCP server instead of grep/LSP, unlocking the core benefits: branch-aware differential analysis, evidence anchors, and single-call blast-radius computation.
+
+## Setup
+
+1. Install GraphPilot locally:
+
+```bash
+git clone https://github.com/graphpilot-oss/graphpilot.git
+cd graphpilot && pnpm install && pnpm build
+```
+
+2. Index your repo:
+
+```bash
+node dist/cli.js index /path/to/your/repo
+node dist/cli.js watch /path/to/your/repo &  # keeps index fresh
+```
+
+3. Configure Claude Code MCP server (in `~/.claude.json`):
+
+```json
+{
+  "mcpServers": {
+    "graphpilot": {
+      "command": "node",
+      "args": ["/absolute/path/to/graphpilot/dist/cli.js", "mcp"]
+    }
+  }
+}
+```
+
+4. Copy this file into your repo root (or a `.claude/` dir).
+
+## Routing rules
+
+**For "who calls X?" questions:**
+
+- Use `gp_callers` instead of grep / LSP.
+- Single call returns both direct + transitive callers with evidence anchors.
+- Example: _"What functions call `validateUser`?"_ → `gp_callers(validateUser)`
+
+**For "what breaks if I rename/delete X?" questions:**
+
+- Use `gp_impact` instead of composing grep + git.
+- Returns direct callers + transitive callers + tests affected + public-API flag.
+- Single call, no chaining.
+- Example: _"What breaks if I rename `parseFile`?"_ → `gp_impact(parseFile)`
+
+**For "what does my PR touch?" (diff-scoped refactors):**
+
+- Use `gp_impact({since: 'main'})` to filter the blast radius to only your branch.
+- Cuts noise: only callers in files _you actually changed_ are returned.
+- Example: _"On this feature branch, if I rename `fooHelper`, which of my changed files will break?"_ → `gp_impact(fooHelper, {since: 'main'})`
+
+**For "find all functions matching a pattern:"**
+
+- Use `gp_recall` for exact or substring search.
+- Fast, structural, no false positives from comments.
+- Example: _"List every function whose name contains 'parse'"_ → `gp_recall({kind: 'function', name: 'parse'})`
+
+**For "enumerate all X of kind Y:"**
+
+- Use `gp_recall` with a kind filter.
+- Example: _"List every TypeScript interface"_ → `gp_recall({kind: 'interface'})`
+
+**Fallback: grep or text search:**
+
+- Use grep only for string-literal searches (constants, error messages, comments).
+- GraphPilot doesn't index text content, only structure.
+- Example: _"Find every place `MAX_FILE_SIZE` is mentioned"_ → grep
+
+## Evidence anchors
+
+Every `gp_*` tool response includes `file:line @ sha` citations. Example output:
+
+```
+1. analyzeImpact  (function)  src/impact.ts:168 @ ab12cd3
+   export function analyzeImpact(idx: GraphIndex, ...): ImpactResult | null
+```
+
+When citing results to your user, include these anchors verbatim. They're verifiable: paste `src/impact.ts:168` into your editor's goto-line command and the code will match the quoted excerpt.
+
+**Why it matters:** If a tool ever hallucinated a symbol or a caller, you'd spot it instantly by jumping to the file. No more "the tool said this exists but I can't find it" dead ends.
+
+## Scope & limitations
+
+GraphPilot v0.1 indexes **TypeScript/JavaScript only**. For Python/Rust/Go repos, fall back to grep or your IDE's LSP.
+
+- **Fast:** sub-second recall on repos up to ~100k LOC.
+- **Deterministic:** same repo = same index (not language-model based, no flakiness).
+- **Structural only:** no semantic search, no taint analysis, no control-flow analysis (yet).
+
+See [`docs/limitations.md`](../../docs/limitations.md) in the GraphPilot repo for the full boundary conditions.
+
+## Tips for agent use
+
+1. **Always check the SHA.** If the index SHA is old (> a few hours), ask the user to re-run `graphpilot watch` or re-index.
+2. **On cache miss.** If `gp_recall` returns no results, confirm the symbol name and kind — it may be spelled differently or exported as a type alias.
+3. **Test the evidence.** Before recommending a refactor, jump to one of the cited file:line anchors yourself to confirm the code matches.
+4. **Diff-scoped analysis.** For PR review, always use `gp_impact({since: 'main'})` instead of the raw impact — it cuts false positives.

package/examples/claude-code/claude_config.json

@@ -0,0 +1,8 @@
+{
+  "mcpServers": {
+    "graphpilot": {
+      "command": "node",
+      "args": ["/absolute/path/to/graphpilot/dist/cli.js", "mcp"]
+    }
+  }
+}

package/examples/cline/.clinerules

@@ -0,0 +1,39 @@
+# GraphPilot routing rules for Cline
+
+This repo has a GraphPilot structural code-graph available via MCP. Use it before grep on structural questions.
+
+## When the user asks any of:
+
+- "who calls X" / "what uses X" / "where is X called from"
+- "what does X call" / "what does X depend on"
+- "rename X — what breaks" / "impact of changing X" / "what depends on X"
+- "find function X" / "where is X defined" / "list all interfaces"
+
+→ **Use the graphpilot MCP tools BEFORE grep or reading files.**
+
+| Question kind          | Tool to call                                            |
+| ---------------------- | ------------------------------------------------------- |
+| Define / locate symbol | `gp_recall({ query, substring?, path? })`               |
+| Callers / callees      | `gp_callers({ symbol, direction, path? })`              |
+| Blast radius / rename  | `gp_impact({ symbol, depth?, path? })`                  |
+| PR-scoped blast radius | `gp_impact({ symbol, since: 'main', path? })`           |
+| Index health probe     | `gp_stats({ path? })`                                   |
+| Refresh after edits    | `gp_index({ path? })`                                   |
+
+## When NOT to use GraphPilot
+
+Fall back to grep / read for:
+
+- Comments, JSDoc, string literals, error messages
+- Config files (package.json, tsconfig.json, .env)
+- Markdown / docs
+- Languages other than TypeScript / JavaScript
+- Git history (blame, log)
+
+## After heavy editing
+
+After ~10+ file edits, call `gp_index` once before further structural questions, or run `graphpilot watch` in a side terminal for sub-10 ms incremental updates.
+
+## Citing evidence
+
+Every GraphPilot response carries `file:line @ sha` anchors. When citing results to the user, **include the anchor verbatim** — it's verifiable: the user can jump to that line and the code will match.