@grafema/mcp 0.2.1-beta → 0.2.6-beta

package/README.md

@@ -2,7 +2,7 @@
 
 > MCP server for Grafema code analysis toolkit
 
-**Warning: This package is in early alpha stage and is not recommended for production use.**
+**Warning: This package is in beta stage and the API may change between minor versions.**
 
 ## Installation
 
@@ -12,16 +12,10 @@ npm install @grafema/mcp
 
 ## Overview
 
-Model Context Protocol (MCP) server that exposes Grafema's code analysis capabilities to AI assistants like Claude. Enables AI agents to query code graphs, trace data flow, and check invariants.
+Model Context Protocol (MCP) server that exposes Grafema's code analysis capabilities to AI assistants like Claude. Enables AI agents to query code graphs, trace data flow, and check invariants — without reading source code.
 
 ## Quick Start
 
-### Running the server
-
-```bash
-npx grafema-mcp --project /path/to/your/project
-```
-
 ### Claude Code configuration
 
 Add to your project's `.mcp.json`:
@@ -37,6 +31,8 @@ Add to your project's `.mcp.json`:
 }
 ```
 
+The RFDB graph database server is auto-started on first query. No manual setup needed.
+
 ### Claude Desktop configuration
 
 Add to `~/.config/claude/claude_desktop_config.json`:
@@ -52,17 +48,55 @@ Add to `~/.config/claude/claude_desktop_config.json`:
 }
 ```
 
-## Available Tools
+## Available Tools (24)
 
+### Graph Queries
 | Tool | Description |
 |------|-------------|
 | `query_graph` | Execute Datalog queries on the code graph |
+| `find_nodes` | Find nodes by type, name, or file |
 | `find_calls` | Find all calls to a function or method |
-| `trace_alias` | Trace variable aliases to their source |
-| `get_value_set` | Analyze possible values of a variable |
-| `trace_data_flow` | Trace data flow from source to sink |
-| `check_invariant` | Verify code invariants via Datalog |
-| `analyze_project` | Trigger full or incremental analysis |
+| `get_stats` | Get graph statistics (node/edge counts by type) |
+| `get_schema` | Get available node and edge types |
+
+### Navigation
+| Tool | Description |
+|------|-------------|
+| `get_function_details` | Comprehensive function details (calls, calledBy, parameters) |
+| `get_file_overview` | Structured overview of all entities in a file |
+| `get_context` | Deep context for a node (source code + graph neighborhood) |
+| `find_guards` | Find conditional guards protecting a node |
+| `read_project_structure` | Directory structure of the project |
+
+### Data Flow
+| Tool | Description |
+|------|-------------|
+| `trace_alias` | Trace alias chains to the original source |
+| `trace_dataflow` | Trace data flow from/to a variable or expression |
+
+### Analysis
+| Tool | Description |
+|------|-------------|
+| `analyze_project` | Run full or incremental analysis |
+| `get_analysis_status` | Current analysis status and progress |
+| `get_coverage` | Analysis coverage for a path |
+| `discover_services` | Discover services without full analysis |
+
+### Guarantees
+| Tool | Description |
+|------|-------------|
+| `check_invariant` | Check a code invariant via Datalog rule |
+| `create_guarantee` | Create a Datalog-based or contract-based guarantee |
+| `list_guarantees` | List all defined guarantees |
+| `check_guarantees` | Run all or specific guarantees |
+| `delete_guarantee` | Delete a guarantee by name |
+
+### Utilities
+| Tool | Description |
+|------|-------------|
+| `get_documentation` | Documentation about Grafema usage |
+| `report_issue` | Report a bug to GitHub (requires GITHUB_TOKEN) |
+| `write_config` | Write or update .grafema/config.yaml |
 
 ## Example Queries
 
@@ -71,7 +105,7 @@ Add to `~/.config/claude/claude_desktop_config.json`:
 query_graph("node(X, 'db:query')")
 
 // Trace where user input flows
-trace_data_flow({ from: "req.body", file: "api/users.js" })
+trace_dataflow({ from: "req.body", file: "api/users.js" })
 
 // Check for eval usage
 check_invariant("violation(X) :- node(X, 'CALL'), attr(X, 'name', 'eval')")
@@ -81,9 +115,6 @@ check_invariant("violation(X) :- node(X, 'CALL'), attr(X, 'name', 'eval')")
 
 ### GitHub Token (for bug reporting)
 
-The `report_issue` tool can automatically create GitHub issues if `GITHUB_TOKEN` is set.
-
-**Option 1: In `.mcp.json`**
 ```json
 {
   "mcpServers": {
@@ -98,13 +129,6 @@ The `report_issue` tool can automatically create GitHub issues if `GITHUB_TOKEN`
 }
 ```
 
-**Option 2: Environment variable**
-```bash
-export GITHUB_TOKEN=ghp_your_token_here
-```
-
-To create a token: https://github.com/settings/tokens/new (needs `repo` scope for public repos, or `public_repo` for public only).
-
 ## License
 
 Apache-2.0

package/dist/analysis-worker.js

@@ -12,11 +12,11 @@ import { Orchestrator, RFDBServerBackend,
 // Indexing
 JSModuleIndexer, 
 // Analysis
-JSASTAnalyzer, ExpressRouteAnalyzer, ExpressResponseAnalyzer, SocketIOAnalyzer, DatabaseAnalyzer, FetchAnalyzer, ServiceLayerAnalyzer, ReactAnalyzer, 
+JSASTAnalyzer, ExpressRouteAnalyzer, ExpressResponseAnalyzer, NestJSRouteAnalyzer, SocketIOAnalyzer, DatabaseAnalyzer, FetchAnalyzer, ServiceLayerAnalyzer, ReactAnalyzer, 
 // Enrichment
-MethodCallResolver, ArgumentParameterLinker, AliasTracker, ValueDomainAnalyzer, MountPointResolver, PrefixEvaluator, HTTPConnectionEnricher, 
+MethodCallResolver, ArgumentParameterLinker, AliasTracker, ValueDomainAnalyzer, MountPointResolver, PrefixEvaluator, ConfigRoutingMapBuilder, ServiceConnectionEnricher, RejectionPropagationEnricher, 
 // Validation
-CallResolverValidator, EvalBanValidator, SQLInjectionValidator, ShadowingDetector, GraphConnectivityValidator, DataFlowValidator, } from '@grafema/core';
+CallResolverValidator, EvalBanValidator, SQLInjectionValidator, AwaitInLoopValidator, ShadowingDetector, GraphConnectivityValidator, DataFlowValidator, UnconnectedRouteValidator, } from '@grafema/core';
 const projectPath = process.argv[2];
 const serviceName = process.argv[3] && process.argv[3] !== '' ? process.argv[3] : null;
 const indexOnly = process.argv[4] === 'indexOnly';
@@ -80,6 +80,7 @@ async function run() {
             JSASTAnalyzer: () => new JSASTAnalyzer(),
             ExpressRouteAnalyzer: () => new ExpressRouteAnalyzer(),
             ExpressResponseAnalyzer: () => new ExpressResponseAnalyzer(),
+            NestJSRouteAnalyzer: () => new NestJSRouteAnalyzer(),
             SocketIOAnalyzer: () => new SocketIOAnalyzer(),
             DatabaseAnalyzer: () => new DatabaseAnalyzer(),
             FetchAnalyzer: () => new FetchAnalyzer(),
@@ -91,13 +92,17 @@ async function run() {
             ValueDomainAnalyzer: () => new ValueDomainAnalyzer(),
             MountPointResolver: () => new MountPointResolver(),
             PrefixEvaluator: () => new PrefixEvaluator(),
-            HTTPConnectionEnricher: () => new HTTPConnectionEnricher(),
+            ConfigRoutingMapBuilder: () => new ConfigRoutingMapBuilder(),
+            ServiceConnectionEnricher: () => new ServiceConnectionEnricher(),
+            RejectionPropagationEnricher: () => new RejectionPropagationEnricher(),
             CallResolverValidator: () => new CallResolverValidator(),
             EvalBanValidator: () => new EvalBanValidator(),
             SQLInjectionValidator: () => new SQLInjectionValidator(),
+            AwaitInLoopValidator: () => new AwaitInLoopValidator(),
             ShadowingDetector: () => new ShadowingDetector(),
             GraphConnectivityValidator: () => new GraphConnectivityValidator(),
             DataFlowValidator: () => new DataFlowValidator(),
+            UnconnectedRouteValidator: () => new UnconnectedRouteValidator(),
         };
         // Add custom plugins
         for (const [name, PluginClass] of Object.entries(customPlugins)) {
@@ -105,7 +110,7 @@ async function run() {
         }
         // Build plugins array from config
         const plugins = [];
-        for (const [phase, pluginNames] of Object.entries(config.plugins || {})) {
+        for (const [_phase, pluginNames] of Object.entries(config.plugins || {})) {
             for (const name of pluginNames) {
                 if (builtinPlugins[name]) {
                     plugins.push(builtinPlugins[name]());
@@ -162,7 +167,7 @@ async function run() {
         // Use async methods for RFDBServerBackend
         const allEdges = await db.getAllEdgesAsync();
         edgeCount = allEdges.length;
-        for await (const _ of db.queryNodes({})) {
+        for await (const _node of db.queryNodes({})) {
             nodeCount++;
         }
         // Flush to disk using proper async method
@@ -188,13 +193,16 @@ async function run() {
                 console.log('[Worker] Database connection closed in cleanup');
             }
             catch (closeErr) {
-                console.error('[Worker] Error closing database connection:', closeErr.message);
+                const message = closeErr instanceof Error ? closeErr.message : String(closeErr);
+                console.error('[Worker] Error closing database connection:', message);
             }
         }
     }
 }
 run().catch(err => {
-    sendError(err);
+    const error = err instanceof Error ? err : new Error(String(err));
+    sendError(error);
     console.error('Analysis failed:', err);
     process.exit(1);
 });
+//# sourceMappingURL=analysis-worker.js.map

package/dist/analysis-worker.js.map

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package/dist/analysis.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"analysis.d.ts","sourceRoot":"","sources":["../src/analysis.ts"],"names":[],"mappings":"AAAA;;GAEG;AAeH,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,gBAAgB,CAAC;AAEnD;;;;;;;;;;;;GAYG;AACH,wBAAsB,cAAc,CAClC,WAAW,GAAE,MAAM,GAAG,IAAW,EACjC,KAAK,GAAE,OAAe,GACrB,OAAO,CAAC,YAAY,CAAC,CAwGvB;AAED;;GAEG;AACH,wBAAsB,gBAAgB,IAAI,OAAO,CAAC,OAAO,EAAE,CAAC,CAyC3D"}
+{"version":3,"file":"analysis.d.ts","sourceRoot":"","sources":["../src/analysis.ts"],"names":[],"mappings":"AAAA;;GAEG;AAgBH,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,gBAAgB,CAAC;AAEnD;;;;;;;;;;;;GAYG;AACH,wBAAsB,cAAc,CAClC,WAAW,GAAE,MAAM,GAAG,IAAW,EACjC,KAAK,GAAE,OAAe,GACrB,OAAO,CAAC,YAAY,CAAC,CAwGvB;AAED;;GAEG;AACH,wBAAsB,gBAAgB,IAAI,OAAO,CAAC,OAAO,EAAE,CAAC,CAyC3D"}

package/dist/analysis.js

@@ -133,3 +133,4 @@ export async function discoverServices() {
     log(`[Grafema MCP] Discovery complete: found ${manifest.services?.length || 0} services`);
     return manifest.services || [];
 }
+//# sourceMappingURL=analysis.js.map

package/dist/analysis.js.map

@@ -0,0 +1 @@
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package/dist/config.d.ts.map

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+{"version":3,"file":"config.d.ts","sourceRoot":"","sources":["../src/config.ts"],"names":[],"mappings":"AAAA;;GAEG;AAMH,OAAO,EAAoC,KAAK,aAAa,EAAE,MAAM,eAAe,CAAC;AAmDrF;;GAEG;AACH,MAAM,WAAW,SAAU,SAAQ,aAAa;IAC9C,SAAS,CAAC,EAAE;QACV,OAAO,EAAE,OAAO,CAAC;QACjB,UAAU,EAAE,OAAO,CAAC;KACrB,CAAC;IACF,QAAQ,CAAC,EAAE;QACT,OAAO,CAAC,EAAE,MAAM,CAAC;KAClB,CAAC;IACF,OAAO,CAAC,EAAE,OAAO,GAAG,MAAM,CAAC;IAC3B,WAAW,CAAC,EAAE,MAAM,CAAC;CACtB;AAUD,KAAK,aAAa,GAAG,MAAM,OAAO,CAAC;AAEnC,eAAO,MAAM,eAAe,EAAE,MAAM,CAAC,MAAM,EAAE,aAAa,CAgDzD,CAAC;AAGF;;;GAGG;AACH,wBAAgB,UAAU,CAAC,WAAW,EAAE,MAAM,GAAG,SAAS,CAWzD;AAGD,MAAM,WAAW,kBAAkB;IACjC,OAAO,EAAE,OAAO,EAAE,CAAC;IACnB,SAAS,EAAE,MAAM,CAAC,MAAM,EAAE,UAAU,OAAO,CAAC,CAAC;CAC9C;AAED,wBAAsB,iBAAiB,CAAC,WAAW,EAAE,MAAM,GAAG,OAAO,CAAC,kBAAkB,CAAC,CA0CxF;AAGD,wBAAgB,aAAa,CAC3B,MAAM,EAAE,aAAa,CAAC,SAAS,CAAC,EAChC,eAAe,GAAE,MAAM,CAAC,MAAM,EAAE,UAAU,OAAO,CAAM,GACtD,OAAO,EAAE,CA8BX"}

package/dist/config.js

@@ -11,11 +11,11 @@ import {
 // Indexing
 JSModuleIndexer, RustModuleIndexer, 
 // Analysis
-JSASTAnalyzer, ExpressRouteAnalyzer, ExpressResponseAnalyzer, SocketIOAnalyzer, DatabaseAnalyzer, FetchAnalyzer, ServiceLayerAnalyzer, ReactAnalyzer, RustAnalyzer, 
+JSASTAnalyzer, ExpressRouteAnalyzer, ExpressResponseAnalyzer, NestJSRouteAnalyzer, SocketIOAnalyzer, DatabaseAnalyzer, FetchAnalyzer, SocketAnalyzer, ServiceLayerAnalyzer, ReactAnalyzer, RustAnalyzer, 
 // Enrichment
-MethodCallResolver, ArgumentParameterLinker, AliasTracker, ValueDomainAnalyzer, MountPointResolver, PrefixEvaluator, InstanceOfResolver, HTTPConnectionEnricher, RustFFIEnricher, 
+MethodCallResolver, ArgumentParameterLinker, AliasTracker, ClosureCaptureEnricher, ValueDomainAnalyzer, MountPointResolver, ExpressHandlerLinker, PrefixEvaluator, ImportExportLinker, InstanceOfResolver, HTTPConnectionEnricher, CallbackCallResolver, SocketConnectionEnricher, ConfigRoutingMapBuilder, ServiceConnectionEnricher, RustFFIEnricher, RejectionPropagationEnricher, 
 // Validation
-CallResolverValidator, EvalBanValidator, SQLInjectionValidator, ShadowingDetector, GraphConnectivityValidator, DataFlowValidator, TypeScriptDeadCodeValidator, } from '@grafema/core';
+CallResolverValidator, EvalBanValidator, SQLInjectionValidator, AwaitInLoopValidator, ShadowingDetector, GraphConnectivityValidator, DataFlowValidator, TypeScriptDeadCodeValidator, BrokenImportValidator, UnconnectedRouteValidator, } from '@grafema/core';
 const MCP_DEFAULTS = {
     discovery: {
         enabled: true,
@@ -30,9 +30,11 @@ export const BUILTIN_PLUGINS = {
     JSASTAnalyzer: () => new JSASTAnalyzer(),
     ExpressRouteAnalyzer: () => new ExpressRouteAnalyzer(),
     ExpressResponseAnalyzer: () => new ExpressResponseAnalyzer(),
+    NestJSRouteAnalyzer: () => new NestJSRouteAnalyzer(),
     SocketIOAnalyzer: () => new SocketIOAnalyzer(),
     DatabaseAnalyzer: () => new DatabaseAnalyzer(),
     FetchAnalyzer: () => new FetchAnalyzer(),
+    SocketAnalyzer: () => new SocketAnalyzer(),
     ServiceLayerAnalyzer: () => new ServiceLayerAnalyzer(),
     ReactAnalyzer: () => new ReactAnalyzer(),
     RustAnalyzer: () => new RustAnalyzer(),
@@ -40,20 +42,31 @@ export const BUILTIN_PLUGINS = {
     MethodCallResolver: () => new MethodCallResolver(),
     ArgumentParameterLinker: () => new ArgumentParameterLinker(),
     AliasTracker: () => new AliasTracker(),
+    ClosureCaptureEnricher: () => new ClosureCaptureEnricher(),
     ValueDomainAnalyzer: () => new ValueDomainAnalyzer(),
     MountPointResolver: () => new MountPointResolver(),
+    ExpressHandlerLinker: () => new ExpressHandlerLinker(),
     PrefixEvaluator: () => new PrefixEvaluator(),
+    ImportExportLinker: () => new ImportExportLinker(),
     InstanceOfResolver: () => new InstanceOfResolver(),
     HTTPConnectionEnricher: () => new HTTPConnectionEnricher(),
+    CallbackCallResolver: () => new CallbackCallResolver(),
+    SocketConnectionEnricher: () => new SocketConnectionEnricher(),
+    ConfigRoutingMapBuilder: () => new ConfigRoutingMapBuilder(),
+    ServiceConnectionEnricher: () => new ServiceConnectionEnricher(),
     RustFFIEnricher: () => new RustFFIEnricher(),
+    RejectionPropagationEnricher: () => new RejectionPropagationEnricher(),
     // Validation
     CallResolverValidator: () => new CallResolverValidator(),
     EvalBanValidator: () => new EvalBanValidator(),
     SQLInjectionValidator: () => new SQLInjectionValidator(),
+    AwaitInLoopValidator: () => new AwaitInLoopValidator(),
     ShadowingDetector: () => new ShadowingDetector(),
     GraphConnectivityValidator: () => new GraphConnectivityValidator(),
     DataFlowValidator: () => new DataFlowValidator(),
     TypeScriptDeadCodeValidator: () => new TypeScriptDeadCodeValidator(),
+    BrokenImportValidator: () => new BrokenImportValidator(),
+    UnconnectedRouteValidator: () => new UnconnectedRouteValidator(),
 };
 // === CONFIG LOADING ===
 /**
@@ -88,18 +101,24 @@ export async function loadCustomPlugins(projectPath) {
                 const PluginClass = module.default || module[file.replace(/\.(m?js)$/, '')];
                 if (PluginClass && typeof PluginClass === 'function') {
                     const pluginName = PluginClass.name || file.replace(/\.(m?js)$/, '');
-                    customPlugins.push(new PluginClass());
+                    const instance = new PluginClass();
+                    if (instance.config) {
+                        instance.config.sourceFile = pluginPath;
+                    }
+                    customPlugins.push(instance);
                     pluginMap[pluginName] = PluginClass;
                     log(`[Grafema MCP] Loaded custom plugin: ${pluginName} from ${file}`);
                 }
             }
             catch (err) {
-                log(`[Grafema MCP] Failed to load plugin ${file}: ${err.message}`);
+                const message = err instanceof Error ? err.message : String(err);
+                log(`[Grafema MCP] Failed to load plugin ${file}: ${message}`);
             }
         }
     }
     catch (err) {
-        log(`[Grafema MCP] Error loading custom plugins: ${err.message}`);
+        const message = err instanceof Error ? err.message : String(err);
+        log(`[Grafema MCP] Error loading custom plugins: ${message}`);
     }
     return { plugins: customPlugins, pluginMap };
 }
@@ -126,8 +145,9 @@ export function createPlugins(config, customPluginMap = {}) {
             log(`[Grafema MCP] Enabled plugin: ${name}`);
         }
         else {
-            log(`[Grafema MCP] Warning: Unknown plugin ${name}`);
+            log(`[Grafema MCP] Plugin not found: ${name} (skipping)`);
         }
     }
     return plugins;
 }
+//# sourceMappingURL=config.js.map

package/dist/config.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"config.js","sourceRoot":"","sources":["../src/config.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,EAAE,IAAI,EAAE,MAAM,MAAM,CAAC;AAC5B,OAAO,EAAE,UAAU,EAAE,WAAW,EAAE,MAAM,IAAI,CAAC;AAC7C,OAAO,EAAE,aAAa,EAAE,MAAM,KAAK,CAAC;AACpC,OAAO,EAAE,GAAG,EAAE,MAAM,YAAY,CAAC;AACjC,OAAO,EAAE,UAAU,IAAI,kBAAkB,EAAsB,MAAM,eAAe,CAAC;AAErF,yBAAyB;AACzB,OAAO;AACL,WAAW;AACX,eAAe,EACf,iBAAiB;AACjB,WAAW;AACX,aAAa,EACb,oBAAoB,EACpB,uBAAuB,EACvB,mBAAmB,EACnB,gBAAgB,EAChB,gBAAgB,EAChB,aAAa,EACb,cAAc,EACd,oBAAoB,EACpB,aAAa,EACb,YAAY;AACZ,aAAa;AACb,kBAAkB,EAClB,uBAAuB,EACvB,YAAY,EACZ,sBAAsB,EACtB,mBAAmB,EACnB,kBAAkB,EAClB,oBAAoB,EACpB,eAAe,EACf,kBAAkB,EAClB,kBAAkB,EAClB,sBAAsB,EACtB,oBAAoB,EACpB,wBAAwB,EACxB,uBAAuB,EACvB,yBAAyB,EACzB,eAAe,EACf,4BAA4B;AAC5B,aAAa;AACb,qBAAqB,EACrB,gBAAgB,EAChB,qBAAqB,EACrB,oBAAoB,EACpB,iBAAiB,EACjB,0BAA0B,EAC1B,iBAAiB,EACjB,2BAA2B,EAC3B,qBAAqB,EACrB,yBAAyB,GAC1B,MAAM,eAAe,CAAC;AAkBvB,MAAM,YAAY,GAAiC;IACjD,SAAS,EAAE;QACT,OAAO,EAAE,IAAI;QACb,UAAU,EAAE,KAAK;KAClB;CACF,CAAC;AAKF,MAAM,CAAC,MAAM,eAAe,GAAkC;IAC5D,WAAW;IACX,eAAe,EAAE,GAAG,EAAE,CAAC,IAAI,eAAe,EAAE;IAC5C,iBAAiB,EAAE,GAAG,EAAE,CAAC,IAAI,iBAAiB,EAAE;IAEhD,WAAW;IACX,aAAa,EAAE,GAAG,EAAE,CAAC,IAAI,aAAa,EAAE;IACxC,oBAAoB,EAAE,GAAG,EAAE,CAAC,IAAI,oBAAoB,EAAE;IACtD,uBAAuB,EAAE,GAAG,EAAE,CAAC,IAAI,uBAAuB,EAAE;IAC5D,mBAAmB,EAAE,GAAG,EAAE,CAAC,IAAI,mBAAmB,EAAE;IACpD,gBAAgB,EAAE,GAAG,EAAE,CAAC,IAAI,gBAAgB,EAAE;IAC9C,gBAAgB,EAAE,GAAG,EAAE,CAAC,IAAI,gBAAgB,EAAE;IAC9C,aAAa,EAAE,GAAG,EAAE,CAAC,IAAI,aAAa,EAAE;IACxC,cAAc,EAAE,GAAG,EAAE,CAAC,IAAI,cAAc,EAAE;IAC1C,oBAAoB,EAAE,GAAG,EAAE,CAAC,IAAI,oBAAoB,EAAE;IACtD,aAAa,EAAE,GAAG,EAAE,CAAC,IAAI,aAAa,EAAE;IACxC,YAAY,EAAE,GAAG,EAAE,CAAC,IAAI,YAAY,EAAE;IAEtC,aAAa;IACb,kBAAkB,EAAE,GAAG,EAAE,CAAC,IAAI,kBAAkB,EAAE;IAClD,uBAAuB,EAAE,GAAG,EAAE,CAAC,IAAI,uBAAuB,EAAE;IAC5D,YAAY,EAAE,GAAG,EAAE,CAAC,IAAI,YAAY,EAAE;IACtC,sBAAsB,EAAE,GAAG,EAAE,CAAC,IAAI,sBAAsB,EAAE;IAC1D,mBAAmB,EAAE,GAAG,EAAE,CAAC,IAAI,mBAAmB,EAAE;IACpD,kBAAkB,EAAE,GAAG,EAAE,CAAC,IAAI,kBAAkB,EAAE;IAClD,oBAAoB,EAAE,GAAG,EAAE,CAAC,IAAI,oBAAoB,EAAE;IACtD,eAAe,EAAE,GAAG,EAAE,CAAC,IAAI,eAAe,EAAE;IAC5C,kBAAkB,EAAE,GAAG,EAAE,CAAC,IAAI,kBAAkB,EAAE;IAClD,kBAAkB,EAAE,GAAG,EAAE,CAAC,IAAI,kBAAkB,EAAE;IAClD,sBAAsB,EAAE,GAAG,EAAE,CAAC,IAAI,sBAAsB,EAAE;IAC1D,oBAAoB,EAAE,GAAG,EAAE,CAAC,IAAI,oBAAoB,EAAE;IACtD,wBAAwB,EAAE,GAAG,EAAE,CAAC,IAAI,wBAAwB,EAAE;IAC9D,uBAAuB,EAAE,GAAG,EAAE,CAAC,IAAI,uBAAuB,EAAE;IAC5D,yBAAyB,EAAE,GAAG,EAAE,CAAC,IAAI,yBAAyB,EAAE;IAChE,eAAe,EAAE,GAAG,EAAE,CAAC,IAAI,eAAe,EAAE;IAC5C,4BAA4B,EAAE,GAAG,EAAE,CAAC,IAAI,4BAA4B,EAAE;IAEtE,aAAa;IACb,qBAAqB,EAAE,GAAG,EAAE,CAAC,IAAI,qBAAqB,EAAE;IACxD,gBAAgB,EAAE,GAAG,EAAE,CAAC,IAAI,gBAAgB,EAAE;IAC9C,qBAAqB,EAAE,GAAG,EAAE,CAAC,IAAI,qBAAqB,EAAE;IACxD,oBAAoB,EAAE,GAAG,EAAE,CAAC,IAAI,oBAAoB,EAAE;IACtD,iBAAiB,EAAE,GAAG,EAAE,CAAC,IAAI,iBAAiB,EAAE;IAChD,0BAA0B,EAAE,GAAG,EAAE,CAAC,IAAI,0BAA0B,EAAE;IAClE,iBAAiB,EAAE,GAAG,EAAE,CAAC,IAAI,iBAAiB,EAAE;IAChD,2BAA2B,EAAE,GAAG,EAAE,CAAC,IAAI,2BAA2B,EAAE;IACpE,qBAAqB,EAAE,GAAG,EAAE,CAAC,IAAI,qBAAqB,EAAE;IACxD,yBAAyB,EAAE,GAAG,EAAE,CAAC,IAAI,yBAAyB,EAAE;CACjE,CAAC;AAEF,yBAAyB;AACzB;;;GAGG;AACH,MAAM,UAAU,UAAU,CAAC,WAAmB;IAC5C,8DAA8D;IAC9D,MAAM,UAAU,GAAG,kBAAkB,CAAC,WAAW,EAAE;QACjD,IAAI,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,GAAG,CAAC,iBAAiB,GAAG,EAAE,CAAC;KAC3C,CAAC,CAAC;IAEH,4BAA4B;IAC5B,OAAO;QACL,GAAG,UAAU;QACb,GAAG,YAAY;KAChB,CAAC;AACJ,CAAC;AAQD,MAAM,CAAC,KAAK,UAAU,iBAAiB,CAAC,WAAmB;IACzD,MAAM,UAAU,GAAG,IAAI,CAAC,WAAW,EAAE,UAAU,EAAE,SAAS,CAAC,CAAC;IAC5D,IAAI,CAAC,UAAU,CAAC,UAAU,CAAC,EAAE,CAAC;QAC5B,OAAO,EAAE,OAAO,EAAE,EAAE,EAAE,SAAS,EAAE,EAAE,EAAE,CAAC;IACxC,CAAC;IAED,MAAM,aAAa,GAAc,EAAE,CAAC;IACpC,MAAM,SAAS,GAAsC,EAAE,CAAC;IAExD,IAAI,CAAC;QACH,MAAM,KAAK,GAAG,WAAW,CAAC,UAAU,CAAC,CAAC,MAAM,CAC1C,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,QAAQ,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,QAAQ,CAAC,MAAM,CAAC,CAC/C,CAAC;QAEF,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;YACzB,IAAI,CAAC;gBACH,MAAM,UAAU,GAAG,IAAI,CAAC,UAAU,EAAE,IAAI,CAAC,CAAC;gBAC1C,MAAM,SAAS,GAAG,aAAa,CAAC,UAAU,CAAC,CAAC,IAAI,CAAC;gBACjD,MAAM,MAAM,GAAG,MAAM,MAAM,CAAC,SAAS,CAAC,CAAC;gBAEvC,MAAM,WAAW,GAAG,MAAM,CAAC,OAAO,IAAI,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,WAAW,EAAE,EAAE,CAAC,CAAC,CAAC;gBAC5E,IAAI,WAAW,IAAI,OAAO,WAAW,KAAK,UAAU,EAAE,CAAC;oBACrD,MAAM,UAAU,GAAG,WAAW,CAAC,IAAI,IAAI,IAAI,CAAC,OAAO,CAAC,WAAW,EAAE,EAAE,CAAC,CAAC;oBACrE,MAAM,QAAQ,GAAG,IAAI,WAAW,EAAE,CAAC;oBACnC,IAAI,QAAQ,CAAC,MAAM,EAAE,CAAC;wBACpB,QAAQ,CAAC,MAAM,CAAC,UAAU,GAAG,UAAU,CAAC;oBAC1C,CAAC;oBACD,aAAa,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;oBAC7B,SAAS,CAAC,UAAU,CAAC,GAAG,WAAW,CAAC;oBACpC,GAAG,CAAC,uCAAuC,UAAU,SAAS,IAAI,EAAE,CAAC,CAAC;gBACxE,CAAC;YACH,CAAC;YAAC,OAAO,GAAG,EAAE,CAAC;gBACb,MAAM,OAAO,GAAG,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;gBACjE,GAAG,CAAC,uCAAuC,IAAI,KAAK,OAAO,EAAE,CAAC,CAAC;YACjE,CAAC;QACH,CAAC;IACH,CAAC;IAAC,OAAO,GAAG,EAAE,CAAC;QACb,MAAM,OAAO,GAAG,GAAG,YAAY,KAAK,CAAC,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;QACjE,GAAG,CAAC,+CAA+C,OAAO,EAAE,CAAC,CAAC;IAChE,CAAC;IAED,OAAO,EAAE,OAAO,EAAE,aAAa,EAAE,SAAS,EAAE,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package/dist/definitions.d.ts

@@ -3,11 +3,11 @@
  */
 interface SchemaProperty {
     type: string;
-    description: string;
+    description?: string;
     enum?: string[];
-    items?: {
-        type: string;
-    };
+    items?: SchemaProperty;
+    properties?: Record<string, SchemaProperty>;
+    required?: string[];
 }
 export interface ToolDefinition {
     name: string;

package/dist/definitions.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"definitions.d.ts","sourceRoot":"","sources":["../src/definitions.ts"],"names":[],"mappings":"AAAA;;GAEG;AAIH,UAAU,cAAc;IACtB,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;IACpB,IAAI,CAAC,EAAE,MAAM,EAAE,CAAC;IAChB,KAAK,CAAC,EAAE;QAAE,IAAI,EAAE,MAAM,CAAA;KAAE,CAAC;CAC1B;AAED,MAAM,WAAW,cAAc;IAC7B,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;IACpB,WAAW,EAAE;QACX,IAAI,EAAE,QAAQ,CAAC;QACf,UAAU,EAAE,MAAM,CAAC,MAAM,EAAE,cAAc,CAAC,CAAC;QAC3C,QAAQ,CAAC,EAAE,MAAM,EAAE,CAAC;KACrB,CAAC;CACH;AAED,eAAO,MAAM,KAAK,EAAE,cAAc,EAoejC,CAAC"}
+{"version":3,"file":"definitions.d.ts","sourceRoot":"","sources":["../src/definitions.ts"],"names":[],"mappings":"AAAA;;GAEG;AAIH,UAAU,cAAc;IACtB,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,IAAI,CAAC,EAAE,MAAM,EAAE,CAAC;IAChB,KAAK,CAAC,EAAE,cAAc,CAAC;IACvB,UAAU,CAAC,EAAE,MAAM,CAAC,MAAM,EAAE,cAAc,CAAC,CAAC;IAC5C,QAAQ,CAAC,EAAE,MAAM,EAAE,CAAC;CACrB;AAED,MAAM,WAAW,cAAc;IAC7B,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;IACpB,WAAW,EAAE;QACX,IAAI,EAAE,QAAQ,CAAC;QACf,UAAU,EAAE,MAAM,CAAC,MAAM,EAAE,cAAc,CAAC,CAAC;QAC3C,QAAQ,CAAC,EAAE,MAAM,EAAE,CAAC;KACrB,CAAC;CACH;AAED,eAAO,MAAM,KAAK,EAAE,cAAc,EA+nBjC,CAAC"}

package/dist/definitions.js

@@ -14,7 +14,7 @@ Available predicates:
 
 NODE TYPES:
 - MODULE, FUNCTION, METHOD, CLASS, VARIABLE, PARAMETER
-- CALL, METHOD_CALL, CALL_SITE
+- CALL, PROPERTY_ACCESS, METHOD_CALL, CALL_SITE
 - http:route, http:request, db:query, socketio:emit, socketio:on
 
 EDGE TYPES:
@@ -82,7 +82,7 @@ Returns call sites with file locations and whether they're resolved.`,
             properties: {
                 type: {
                     type: 'string',
-                    description: 'Node type (e.g., FUNCTION, CLASS, MODULE)',
+                    description: 'Node type (e.g., FUNCTION, CLASS, MODULE, PROPERTY_ACCESS)',
                 },
                 name: {
                     type: 'string',
@@ -371,7 +371,7 @@ Examples:
             properties: {
                 topic: {
                     type: 'string',
-                    description: 'Topic: queries, types, guarantees, or overview',
+                    description: 'Topic: queries, types, guarantees, onboarding, or overview',
                 },
             },
         },
@@ -486,4 +486,159 @@ Max transitive depth is 5 to prevent explosion.`,
             required: ['name'],
         },
     },
+    {
+        name: 'get_context',
+        description: `Get deep context for a graph node: source code + full graph neighborhood.
+
+Shows ALL incoming and outgoing edges grouped by type, with source code
+at each connected node's location. Works for ANY node type.
+
+Use this after find_nodes or query_graph to deep-dive into a specific node.
+
+Output includes:
+- Node info (type, name, semantic ID, location)
+- Source code at the node's location
+- All outgoing edges (what this node connects to)
+- All incoming edges (what connects to this node)
+- Code context at each connected node's location
+
+Primary edges (CALLS, ASSIGNED_FROM, DEPENDS_ON, etc.) include code context.
+Structural edges (CONTAINS, HAS_SCOPE, etc.) are shown in compact form.`,
+        inputSchema: {
+            type: 'object',
+            properties: {
+                semanticId: {
+                    type: 'string',
+                    description: 'Exact semantic ID of the node (from find_nodes or query_graph)',
+                },
+                contextLines: {
+                    type: 'number',
+                    description: 'Lines of code context around each reference (default: 3)',
+                },
+                edgeType: {
+                    type: 'string',
+                    description: 'Filter by edge type (comma-separated, e.g., "CALLS,ASSIGNED_FROM")',
+                },
+            },
+            required: ['semanticId'],
+        },
+    },
+    {
+        name: 'get_file_overview',
+        description: `Get a structured overview of all entities in a file with their relationships.
+
+Shows imports, exports, classes, functions, and variables with key edges
+(CALLS, EXTENDS, ASSIGNED_FROM). Use this for file-level understanding
+before diving into specific nodes with get_context.
+
+Output includes:
+- Imports: module sources and imported names
+- Exports: named and default exports
+- Classes: with methods and their call targets
+- Functions: with call targets
+- Variables: with assignment sources
+
+This is the recommended first step when exploring a file.
+After using this, use get_context with specific node IDs for details.`,
+        inputSchema: {
+            type: 'object',
+            properties: {
+                file: {
+                    type: 'string',
+                    description: 'File path (relative to project root or absolute)',
+                },
+                include_edges: {
+                    type: 'boolean',
+                    description: 'Include relationship edges like CALLS, EXTENDS (default: true). Set false for faster results.',
+                },
+            },
+            required: ['file'],
+        },
+    },
+    {
+        name: 'read_project_structure',
+        description: `Get the directory structure of the project.
+Returns a tree of files and directories, useful for understanding
+project layout during onboarding.
+
+Excludes: node_modules, .git, dist, build, .grafema, coverage, .next, .nuxt
+
+Use this tool when studying a new project to identify services,
+packages, and entry points.`,
+        inputSchema: {
+            type: 'object',
+            properties: {
+                path: {
+                    type: 'string',
+                    description: 'Subdirectory to scan (relative to project root). Default: project root.',
+                },
+                depth: {
+                    type: 'number',
+                    description: 'Maximum directory depth (default: 3, max: 5)',
+                },
+                include_files: {
+                    type: 'boolean',
+                    description: 'Include files in output, not just directories (default: true)',
+                },
+            },
+        },
+    },
+    {
+        name: 'write_config',
+        description: `Write or update the Grafema configuration file (.grafema/config.yaml).
+Validates all inputs before writing. Creates .grafema/ directory if needed.
+
+Use this tool after studying the project to save the discovered configuration.
+Only include fields you want to override — defaults are used for omitted fields.`,
+        inputSchema: {
+            type: 'object',
+            properties: {
+                services: {
+                    type: 'array',
+                    items: {
+                        type: 'object',
+                        properties: {
+                            name: { type: 'string', description: 'Service name (e.g., "backend")' },
+                            path: { type: 'string', description: 'Path relative to project root (e.g., "apps/backend")' },
+                            entryPoint: { type: 'string', description: 'Entry point file relative to service path (e.g., "src/index.ts")' },
+                        },
+                        required: ['name', 'path'],
+                    },
+                    description: 'Service definitions (leave empty to use auto-discovery)',
+                },
+                plugins: {
+                    type: 'object',
+                    properties: {
+                        indexing: { type: 'array', items: { type: 'string' }, description: 'Indexing plugins' },
+                        analysis: { type: 'array', items: { type: 'string' }, description: 'Analysis plugins' },
+                        enrichment: { type: 'array', items: { type: 'string' }, description: 'Enrichment plugins' },
+                        validation: { type: 'array', items: { type: 'string' }, description: 'Validation plugins' },
+                    },
+                    description: 'Plugin configuration (omit to use defaults)',
+                },
+                include: {
+                    type: 'array',
+                    items: { type: 'string' },
+                    description: 'Glob patterns for files to include (e.g., ["src/**/*.ts"])',
+                },
+                exclude: {
+                    type: 'array',
+                    items: { type: 'string' },
+                    description: 'Glob patterns for files to exclude (e.g., ["**/*.test.ts"])',
+                },
+                workspace: {
+                    type: 'object',
+                    properties: {
+                        roots: {
+                            type: 'array',
+                            items: { type: 'string' },
+                            description: 'Root directories for multi-root workspace',
+                        },
+                    },
+                    description: 'Multi-root workspace config (only for workspaces)',
+                },
+            },
+        },
+    },
 ];
+//# sourceMappingURL=definitions.js.map

package/dist/definitions.js.map

@@ -0,0 +1 @@
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package/dist/handlers/analysis-handlers.d.ts

@@ -0,0 +1,9 @@
+/**
+ * MCP Analysis Handlers
+ */
+import type { ToolResult, AnalyzeProjectArgs, GetSchemaArgs } from '../types.js';
+export declare function handleAnalyzeProject(args: AnalyzeProjectArgs): Promise<ToolResult>;
+export declare function handleGetAnalysisStatus(): Promise<ToolResult>;
+export declare function handleGetStats(): Promise<ToolResult>;
+export declare function handleGetSchema(args: GetSchemaArgs): Promise<ToolResult>;
+//# sourceMappingURL=analysis-handlers.d.ts.map

package/dist/handlers/analysis-handlers.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"analysis-handlers.d.ts","sourceRoot":"","sources":["../../src/handlers/analysis-handlers.ts"],"names":[],"mappings":"AAAA;;GAEG;AAQH,OAAO,KAAK,EACV,UAAU,EACV,kBAAkB,EAClB,aAAa,EACd,MAAM,aAAa,CAAC;AAIrB,wBAAsB,oBAAoB,CAAC,IAAI,EAAE,kBAAkB,GAAG,OAAO,CAAC,UAAU,CAAC,CA6BxF;AAED,wBAAsB,uBAAuB,IAAI,OAAO,CAAC,UAAU,CAAC,CAYnE;AAED,wBAAsB,cAAc,IAAI,OAAO,CAAC,UAAU,CAAC,CAe1D;AAED,wBAAsB,eAAe,CAAC,IAAI,EAAE,aAAa,GAAG,OAAO,CAAC,UAAU,CAAC,CAwB9E"}