@grafema/mcp 0.2.0-beta → 0.2.5-beta

package/dist/types.d.ts

@@ -35,12 +35,14 @@ export interface QueryGraphArgs {
     limit?: number;
     offset?: number;
     format?: 'table' | 'json' | 'tree';
+    explain?: boolean;
 }
 export interface FindCallsArgs {
     target: string;
     limit?: number;
     offset?: number;
     include_indirect?: boolean;
+    className?: string;
 }
 export interface TraceAliasArgs {
     variableName: string;
@@ -150,7 +152,7 @@ export interface GraphBackend {
 export interface GraphNode {
     id: string;
     type: string;
-    name: string;
+    name?: string;
     file?: string;
     line?: number;
     [key: string]: unknown;
@@ -207,6 +209,30 @@ export interface GetFunctionDetailsArgs {
     transitive?: boolean;
 }
 export type { CallInfo, CallerInfo, FindCallsOptions } from '@grafema/core';
+/**
+ * Datalog query result binding
+ */
+export interface DatalogBinding {
+    name: string;
+    value: string;
+}
+/**
+ * Call result structure for filtering
+ */
+export interface CallResult {
+    id: string;
+    name?: string;
+    object?: string;
+    file?: string;
+    line?: number;
+    resolved: boolean;
+    target: {
+        type: string;
+        name: string;
+        file?: string;
+        line?: number;
+    } | null;
+}
 /**
  * Information about a conditional guard (SCOPE node)
  */
@@ -218,4 +244,27 @@ export interface GuardInfo {
     file: string;
     line: number;
 }
+export interface ReadProjectStructureArgs {
+    path?: string;
+    depth?: number;
+    include_files?: boolean;
+}
+export interface WriteConfigArgs {
+    services?: Array<{
+        name: string;
+        path: string;
+        entryPoint?: string;
+    }>;
+    plugins?: {
+        indexing?: string[];
+        analysis?: string[];
+        enrichment?: string[];
+        validation?: string[];
+    };
+    include?: string[];
+    exclude?: string[];
+    workspace?: {
+        roots?: string[];
+    };
+}
 //# sourceMappingURL=types.d.ts.map

package/dist/types.d.ts.map

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package/dist/types.js

@@ -2,3 +2,4 @@
  * MCP Server Types
  */
 export {};
+//# sourceMappingURL=types.js.map

package/dist/types.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"types.js","sourceRoot":"","sources":["../src/types.ts"],"names":[],"mappings":"AAAA;;GAEG"}

package/dist/utils.js

@@ -73,7 +73,7 @@ export function normalizeLimit(limit) {
     return Math.min(Math.max(1, Math.floor(limit)), MAX_LIMIT);
 }
 export function formatPaginationInfo(params) {
-    const { limit, offset, returned, total, hasMore } = params;
+    const { limit: _limit, offset, returned, total, hasMore } = params;
     let info = `\n📄 Pagination: showing ${returned}`;
     if (total !== undefined) {
         info += ` of ${total}`;
@@ -178,3 +178,4 @@ export function truncate(s, maxLen) {
         return s;
     return s.slice(0, maxLen - 3) + '...';
 }
+//# sourceMappingURL=utils.js.map

package/dist/utils.js.map

@@ -0,0 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@grafema/mcp",
-  "version": "0.2.0-beta",
+  "version": "0.2.5-beta",
   "description": "MCP server for Grafema code analysis toolkit",
   "type": "module",
   "main": "./dist/server.js",
@@ -38,8 +38,9 @@
   "dependencies": {
     "@modelcontextprotocol/sdk": "^1.25.1",
     "ajv": "^8.17.1",
-    "@grafema/core": "0.2.0-beta",
-    "@grafema/types": "0.2.0-beta"
+    "yaml": "^2.8.2",
+    "@grafema/types": "0.2.5-beta",
+    "@grafema/core": "0.2.5-beta"
   },
   "devDependencies": {
     "@types/node": "^25.0.8",

package/src/analysis-worker.ts

@@ -13,7 +13,6 @@ import { pathToFileURL } from 'url';
 import {
   Orchestrator,
   RFDBServerBackend,
-  Plugin,
   // Indexing
   JSModuleIndexer,
   // Analysis
@@ -33,6 +32,7 @@ import {
   MountPointResolver,
   PrefixEvaluator,
   HTTPConnectionEnricher,
+  RejectionPropagationEnricher,
   // Validation
   CallResolverValidator,
   EvalBanValidator,
@@ -41,7 +41,8 @@ import {
   GraphConnectivityValidator,
   DataFlowValidator,
 } from '@grafema/core';
-import type { ParallelConfig } from '@grafema/core';
+import type { ParallelConfig ,
+  Plugin} from '@grafema/core';
 
 /**
  * Config structure
@@ -83,7 +84,6 @@ interface ErrorMessage {
   stack?: string;
 }
 
-type WorkerMessage = ProgressMessage | CompleteMessage | ErrorMessage;
 
 const projectPath = process.argv[2];
 const serviceName = process.argv[3] && process.argv[3] !== '' ? process.argv[3] : null;
@@ -172,6 +172,7 @@ async function run(): Promise<void> {
       MountPointResolver: () => new MountPointResolver(),
       PrefixEvaluator: () => new PrefixEvaluator(),
       HTTPConnectionEnricher: () => new HTTPConnectionEnricher(),
+      RejectionPropagationEnricher: () => new RejectionPropagationEnricher(),
       CallResolverValidator: () => new CallResolverValidator(),
       EvalBanValidator: () => new EvalBanValidator(),
       SQLInjectionValidator: () => new SQLInjectionValidator(),
@@ -187,7 +188,7 @@ async function run(): Promise<void> {
 
     // Build plugins array from config
     const plugins: Plugin[] = [];
-    for (const [phase, pluginNames] of Object.entries(config.plugins || {})) {
+    for (const [_phase, pluginNames] of Object.entries(config.plugins || {})) {
       for (const name of pluginNames) {
         if (builtinPlugins[name]) {
           plugins.push(builtinPlugins[name]());
@@ -253,7 +254,7 @@ async function run(): Promise<void> {
     const allEdges = await db.getAllEdgesAsync();
     edgeCount = allEdges.length;
 
-    for await (const _ of db.queryNodes({})) {
+    for await (const _node of db.queryNodes({})) {
       nodeCount++;
     }
 
@@ -282,14 +283,16 @@ async function run(): Promise<void> {
         await db.close();
         console.log('[Worker] Database connection closed in cleanup');
       } catch (closeErr) {
-        console.error('[Worker] Error closing database connection:', (closeErr as Error).message);
+        const message = closeErr instanceof Error ? closeErr.message : String(closeErr);
+        console.error('[Worker] Error closing database connection:', message);
       }
     }
   }
 }
 
 run().catch(err => {
-  sendError(err as Error);
+  const error = err instanceof Error ? err : new Error(String(err));
+  sendError(error);
   console.error('Analysis failed:', err);
   process.exit(1);
 });

package/src/analysis.ts

@@ -2,7 +2,8 @@
  * MCP Analysis Orchestration
  */
 
-import { Orchestrator, Plugin } from '@grafema/core';
+import type { Plugin } from '@grafema/core';
+import { Orchestrator } from '@grafema/core';
 import {
   getOrCreateBackend,
   getProjectPath,

package/src/config.ts

@@ -33,6 +33,7 @@ import {
   InstanceOfResolver,
   HTTPConnectionEnricher,
   RustFFIEnricher,
+  RejectionPropagationEnricher,
   // Validation
   CallResolverValidator,
   EvalBanValidator,
@@ -95,6 +96,7 @@ export const BUILTIN_PLUGINS: Record<string, PluginFactory> = {
   InstanceOfResolver: () => new InstanceOfResolver(),
   HTTPConnectionEnricher: () => new HTTPConnectionEnricher(),
   RustFFIEnricher: () => new RustFFIEnricher(),
+  RejectionPropagationEnricher: () => new RejectionPropagationEnricher(),
 
   // Validation
   CallResolverValidator: () => new CallResolverValidator(),
@@ -153,16 +155,22 @@ export async function loadCustomPlugins(projectPath: string): Promise<CustomPlug
         const PluginClass = module.default || module[file.replace(/\.(m?js)$/, '')];
         if (PluginClass && typeof PluginClass === 'function') {
           const pluginName = PluginClass.name || file.replace(/\.(m?js)$/, '');
-          customPlugins.push(new PluginClass());
+          const instance = new PluginClass();
+          if (instance.config) {
+            instance.config.sourceFile = pluginPath;
+          }
+          customPlugins.push(instance);
           pluginMap[pluginName] = PluginClass;
           log(`[Grafema MCP] Loaded custom plugin: ${pluginName} from ${file}`);
         }
       } catch (err) {
-        log(`[Grafema MCP] Failed to load plugin ${file}: ${(err as Error).message}`);
+        const message = err instanceof Error ? err.message : String(err);
+        log(`[Grafema MCP] Failed to load plugin ${file}: ${message}`);
       }
     }
   } catch (err) {
-    log(`[Grafema MCP] Error loading custom plugins: ${(err as Error).message}`);
+    const message = err instanceof Error ? err.message : String(err);
+    log(`[Grafema MCP] Error loading custom plugins: ${message}`);
   }
 
   return { plugins: customPlugins, pluginMap };
@@ -197,7 +205,7 @@ export function createPlugins(
       plugins.push(factory());
       log(`[Grafema MCP] Enabled plugin: ${name}`);
     } else {
-      log(`[Grafema MCP] Warning: Unknown plugin ${name}`);
+      log(`[Grafema MCP] Plugin not found: ${name} (skipping)`);
     }
   }
 

package/src/definitions.ts

@@ -6,9 +6,11 @@ import { DEFAULT_LIMIT, MAX_LIMIT } from './utils.js';
 
 interface SchemaProperty {
   type: string;
-  description: string;
+  description?: string;
   enum?: string[];
-  items?: { type: string };
+  items?: SchemaProperty;
+  properties?: Record<string, SchemaProperty>;
+  required?: string[];
 }
 
 export interface ToolDefinition {
@@ -33,7 +35,7 @@ Available predicates:
 
 NODE TYPES:
 - MODULE, FUNCTION, METHOD, CLASS, VARIABLE, PARAMETER
-- CALL, METHOD_CALL, CALL_SITE
+- CALL, PROPERTY_ACCESS, METHOD_CALL, CALL_SITE
 - http:route, http:request, db:query, socketio:emit, socketio:on
 
 EDGE TYPES:
@@ -101,7 +103,7 @@ Returns call sites with file locations and whether they're resolved.`,
       properties: {
         type: {
           type: 'string',
-          description: 'Node type (e.g., FUNCTION, CLASS, MODULE)',
+          description: 'Node type (e.g., FUNCTION, CLASS, MODULE, PROPERTY_ACCESS)',
         },
         name: {
           type: 'string',
@@ -390,7 +392,7 @@ Examples:
       properties: {
         topic: {
           type: 'string',
-          description: 'Topic: queries, types, guarantees, or overview',
+          description: 'Topic: queries, types, guarantees, onboarding, or overview',
         },
       },
     },
@@ -505,4 +507,89 @@ Max transitive depth is 5 to prevent explosion.`,
       required: ['name'],
     },
   },
+  {
+    name: 'read_project_structure',
+    description: `Get the directory structure of the project.
+Returns a tree of files and directories, useful for understanding
+project layout during onboarding.
+
+Excludes: node_modules, .git, dist, build, .grafema, coverage, .next, .nuxt
+
+Use this tool when studying a new project to identify services,
+packages, and entry points.`,
+    inputSchema: {
+      type: 'object',
+      properties: {
+        path: {
+          type: 'string',
+          description: 'Subdirectory to scan (relative to project root). Default: project root.',
+        },
+        depth: {
+          type: 'number',
+          description: 'Maximum directory depth (default: 3, max: 5)',
+        },
+        include_files: {
+          type: 'boolean',
+          description: 'Include files in output, not just directories (default: true)',
+        },
+      },
+    },
+  },
+  {
+    name: 'write_config',
+    description: `Write or update the Grafema configuration file (.grafema/config.yaml).
+Validates all inputs before writing. Creates .grafema/ directory if needed.
+
+Use this tool after studying the project to save the discovered configuration.
+Only include fields you want to override — defaults are used for omitted fields.`,
+    inputSchema: {
+      type: 'object',
+      properties: {
+        services: {
+          type: 'array',
+          items: {
+            type: 'object',
+            properties: {
+              name: { type: 'string', description: 'Service name (e.g., "backend")' },
+              path: { type: 'string', description: 'Path relative to project root (e.g., "apps/backend")' },
+              entryPoint: { type: 'string', description: 'Entry point file relative to service path (e.g., "src/index.ts")' },
+            },
+            required: ['name', 'path'],
+          },
+          description: 'Service definitions (leave empty to use auto-discovery)',
+        },
+        plugins: {
+          type: 'object',
+          properties: {
+            indexing: { type: 'array', items: { type: 'string' }, description: 'Indexing plugins' },
+            analysis: { type: 'array', items: { type: 'string' }, description: 'Analysis plugins' },
+            enrichment: { type: 'array', items: { type: 'string' }, description: 'Enrichment plugins' },
+            validation: { type: 'array', items: { type: 'string' }, description: 'Validation plugins' },
+          },
+          description: 'Plugin configuration (omit to use defaults)',
+        },
+        include: {
+          type: 'array',
+          items: { type: 'string' },
+          description: 'Glob patterns for files to include (e.g., ["src/**/*.ts"])',
+        },
+        exclude: {
+          type: 'array',
+          items: { type: 'string' },
+          description: 'Glob patterns for files to exclude (e.g., ["**/*.test.ts"])',
+        },
+        workspace: {
+          type: 'object',
+          properties: {
+            roots: {
+              type: 'array',
+              items: { type: 'string' },
+              description: 'Root directories for multi-root workspace',
+            },
+          },
+          description: 'Multi-root workspace config (only for workspaces)',
+        },
+      },
+    },
+  },
 ];