@grafema/mcp 0.1.0-alpha.1

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package/README.md ADDED
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+ # @grafema/mcp
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+
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+ > MCP server for Grafema code analysis toolkit
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+
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+ **Warning: This package is in early alpha stage and is not recommended for production use.**
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+
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+ ## Installation
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+
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+ ```bash
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+ npm install @grafema/mcp
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+ ```
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+
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+ ## Overview
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+
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+ Model Context Protocol (MCP) server that exposes Grafema's code analysis capabilities to AI assistants like Claude. Enables AI agents to query code graphs, trace data flow, and check invariants.
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+
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+ ## Quick Start
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+
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+ ### Running the server
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+
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+ ```bash
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+ npx grafema-mcp --project /path/to/your/project
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+ ```
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+
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+ ### Claude Desktop configuration
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+
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+ Add to your Claude Desktop config (`~/.config/claude/claude_desktop_config.json`):
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+
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+ ```json
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+ {
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+ "mcpServers": {
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+ "grafema": {
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+ "command": "npx",
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+ "args": ["grafema-mcp", "--project", "/path/to/project"]
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+ }
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+ }
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+ }
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+ ```
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+
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+ ## Available Tools
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+
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+ | Tool | Description |
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+ |------|-------------|
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+ | `query_graph` | Execute Datalog queries on the code graph |
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+ | `find_calls` | Find all calls to a function or method |
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+ | `trace_alias` | Trace variable aliases to their source |
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+ | `get_value_set` | Analyze possible values of a variable |
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+ | `trace_data_flow` | Trace data flow from source to sink |
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+ | `check_invariant` | Verify code invariants via Datalog |
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+ | `analyze_project` | Trigger full or incremental analysis |
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+
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+ ## Example Queries
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+
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+ ```
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+ // Find all database queries
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+ query_graph("node(X, 'db:query')")
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+
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+ // Trace where user input flows
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+ trace_data_flow({ from: "req.body", file: "api/users.js" })
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+
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+ // Check for eval usage
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+ check_invariant("violation(X) :- node(X, 'CALL'), attr(X, 'name', 'eval')")
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+ ```
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+
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+ ## License
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+
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+ Apache-2.0
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+ /**
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+ * Analysis Worker - runs in separate process to avoid blocking MCP server
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+ *
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+ * Usage: node analysis-worker.js <projectPath> [serviceName]
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+ *
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+ * Sends progress updates via IPC to parent process
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+ */
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+ export {};
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+ //# sourceMappingURL=analysis-worker.d.ts.map
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+ {"version":3,"file":"analysis-worker.d.ts","sourceRoot":"","sources":["../src/analysis-worker.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG"}
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+ /**
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+ * Analysis Worker - runs in separate process to avoid blocking MCP server
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+ *
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+ * Usage: node analysis-worker.js <projectPath> [serviceName]
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+ *
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+ * Sends progress updates via IPC to parent process
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+ */
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+ import { join } from 'path';
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+ import { existsSync, readdirSync, readFileSync } from 'fs';
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+ import { pathToFileURL } from 'url';
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+ import { Orchestrator, RFDBServerBackend,
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+ // Indexing
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+ JSModuleIndexer,
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+ // Analysis
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+ JSASTAnalyzer, ExpressRouteAnalyzer, SocketIOAnalyzer, DatabaseAnalyzer, FetchAnalyzer, ServiceLayerAnalyzer, ReactAnalyzer,
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+ // Enrichment
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+ MethodCallResolver, AliasTracker, ValueDomainAnalyzer, MountPointResolver, PrefixEvaluator, HTTPConnectionEnricher,
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+ // Validation
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+ CallResolverValidator, EvalBanValidator, SQLInjectionValidator, ShadowingDetector, GraphConnectivityValidator, DataFlowValidator, } from '@grafema/core';
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+ const projectPath = process.argv[2];
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+ const serviceName = process.argv[3] && process.argv[3] !== '' ? process.argv[3] : null;
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+ const indexOnly = process.argv[4] === 'indexOnly';
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+ if (!projectPath) {
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+ console.error('Usage: node analysis-worker.js <projectPath> [serviceName] [indexOnly]');
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+ process.exit(1);
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+ }
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+ function sendProgress(data) {
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+ if (process.send) {
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+ process.send({ type: 'progress', ...data });
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+ }
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+ }
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+ function sendComplete(data) {
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+ if (process.send) {
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+ process.send({ type: 'complete', ...data });
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+ }
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+ }
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+ function sendError(error) {
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+ if (process.send) {
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+ process.send({ type: 'error', message: error.message, stack: error.stack });
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+ }
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+ }
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+ async function loadConfig() {
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+ const configPath = join(projectPath, '.grafema', 'config.json');
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+ if (existsSync(configPath)) {
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+ return JSON.parse(readFileSync(configPath, 'utf8'));
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+ }
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+ return { plugins: {} };
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+ }
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+ async function loadCustomPlugins() {
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+ const pluginsDir = join(projectPath, '.grafema', 'plugins');
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+ const customPlugins = {};
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+ if (!existsSync(pluginsDir)) {
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+ return customPlugins;
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+ }
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+ const files = readdirSync(pluginsDir).filter(f => f.endsWith('.mjs') || f.endsWith('.js'));
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+ for (const file of files) {
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+ try {
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+ const module = await import(pathToFileURL(join(pluginsDir, file)).href);
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+ const PluginClass = module.default;
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+ if (PluginClass) {
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+ customPlugins[PluginClass.name] = PluginClass;
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+ }
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+ }
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+ catch (err) {
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+ console.error(`Failed to load plugin ${file}:`, err.message);
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+ }
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+ }
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+ return customPlugins;
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+ }
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+ async function run() {
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+ const startTime = Date.now();
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+ let db = null;
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+ try {
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+ sendProgress({ phase: 'starting', message: 'Loading configuration...' });
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+ const config = await loadConfig();
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+ const customPlugins = await loadCustomPlugins();
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+ // Built-in plugins map
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+ const builtinPlugins = {
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+ JSModuleIndexer: () => new JSModuleIndexer(),
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+ JSASTAnalyzer: () => new JSASTAnalyzer(),
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+ ExpressRouteAnalyzer: () => new ExpressRouteAnalyzer(),
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+ SocketIOAnalyzer: () => new SocketIOAnalyzer(),
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+ DatabaseAnalyzer: () => new DatabaseAnalyzer(),
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+ FetchAnalyzer: () => new FetchAnalyzer(),
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+ ServiceLayerAnalyzer: () => new ServiceLayerAnalyzer(),
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+ ReactAnalyzer: () => new ReactAnalyzer(),
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+ MethodCallResolver: () => new MethodCallResolver(),
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+ AliasTracker: () => new AliasTracker(),
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+ ValueDomainAnalyzer: () => new ValueDomainAnalyzer(),
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+ MountPointResolver: () => new MountPointResolver(),
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+ PrefixEvaluator: () => new PrefixEvaluator(),
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+ HTTPConnectionEnricher: () => new HTTPConnectionEnricher(),
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+ CallResolverValidator: () => new CallResolverValidator(),
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+ EvalBanValidator: () => new EvalBanValidator(),
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+ SQLInjectionValidator: () => new SQLInjectionValidator(),
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+ ShadowingDetector: () => new ShadowingDetector(),
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+ GraphConnectivityValidator: () => new GraphConnectivityValidator(),
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+ DataFlowValidator: () => new DataFlowValidator(),
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+ };
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+ // Add custom plugins
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+ for (const [name, PluginClass] of Object.entries(customPlugins)) {
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+ builtinPlugins[name] = () => new PluginClass();
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+ }
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+ // Build plugins array from config
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+ const plugins = [];
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+ for (const [phase, pluginNames] of Object.entries(config.plugins || {})) {
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+ for (const name of pluginNames) {
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+ if (builtinPlugins[name]) {
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+ plugins.push(builtinPlugins[name]());
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+ }
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+ else if (customPlugins[name]) {
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+ plugins.push(new customPlugins[name]());
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+ console.log(`[Worker] Loaded custom plugin: ${name}`);
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+ }
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+ else {
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+ console.warn(`[Worker] Plugin not found: ${name}`);
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+ }
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+ }
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+ }
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+ console.log(`[Worker] Loaded ${plugins.length} plugins:`, plugins.map(p => p.metadata?.name || p.constructor?.name || 'unknown'));
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+ sendProgress({ phase: 'starting', message: `Loaded ${plugins.length} plugins` });
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+ // Get parallel analysis config
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+ const parallelConfig = config.analysis?.parallel;
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+ if (parallelConfig?.enabled) {
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+ console.log(`[Worker] Queue-based parallel mode enabled: workers=${parallelConfig.workers}`);
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+ }
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+ // Connect to RFDB server (shared with MCP server)
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+ // The MCP server starts the RFDB server if not running
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+ const dbPath = join(projectPath, '.grafema', 'graph.rfdb');
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+ const socketPath = config.analysis?.parallel?.socketPath || '/tmp/rfdb.sock';
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+ console.log(`[Worker] Connecting to RFDB server: socket=${socketPath}, db=${dbPath}`);
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+ db = new RFDBServerBackend({ socketPath, dbPath });
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+ await db.connect();
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+ await db.clear();
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+ sendProgress({ phase: 'discovery', message: 'Starting analysis...' });
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+ // Create orchestrator
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+ const orchestrator = new Orchestrator({
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+ graph: db,
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+ plugins,
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+ parallel: parallelConfig, // Pass parallel config for queue-based analysis
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+ serviceFilter: serviceName,
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+ indexOnly: indexOnly,
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+ onProgress: (progress) => {
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+ sendProgress({
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+ phase: progress.phase,
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+ message: progress.message,
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+ servicesAnalyzed: progress.servicesAnalyzed
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+ });
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+ }
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+ });
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+ // Run analysis
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+ await orchestrator.run(projectPath);
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+ // Get final stats
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+ let nodeCount = 0;
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+ let edgeCount = 0;
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+ // Use async methods for RFDBServerBackend
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+ const allEdges = await db.getAllEdgesAsync();
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+ edgeCount = allEdges.length;
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+ for await (const _ of db.queryNodes({})) {
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+ nodeCount++;
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+ }
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+ // Flush to disk using proper async method
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+ console.log('[Worker] Flushing database to disk...');
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+ await db.flush();
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+ console.log('[Worker] Database flushed successfully');
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+ const totalTime = ((Date.now() - startTime) / 1000).toFixed(2);
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+ sendComplete({
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+ nodeCount,
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+ edgeCount,
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+ totalTime
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+ });
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+ // Close database properly before exit
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+ await db.close();
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+ console.log('[Worker] Database closed');
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+ process.exit(0);
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+ }
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+ finally {
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+ // Ensure database connection is closed even on error
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+ if (db && db.connected) {
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+ try {
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+ await db.close();
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+ console.log('[Worker] Database connection closed in cleanup');
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+ }
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+ catch (closeErr) {
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+ console.error('[Worker] Error closing database connection:', closeErr.message);
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+ }
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+ }
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+ }
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+ }
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+ run().catch(err => {
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+ sendError(err);
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+ console.error('Analysis failed:', err);
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+ process.exit(1);
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+ });
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+ /**
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+ * MCP Analysis Orchestration
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+ */
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+ import type { GraphBackend } from '@grafema/types';
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+ /**
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+ * Ensure project is analyzed, optionally filtering to a single service
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+ */
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+ export declare function ensureAnalyzed(serviceName?: string | null): Promise<GraphBackend>;
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+ /**
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+ * Discover services without running full analysis
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+ */
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+ export declare function discoverServices(): Promise<unknown[]>;
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+ //# sourceMappingURL=analysis.d.ts.map
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+ {"version":3,"file":"analysis.d.ts","sourceRoot":"","sources":["../src/analysis.ts"],"names":[],"mappings":"AAAA;;GAEG;AAaH,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,gBAAgB,CAAC;AAEnD;;GAEG;AACH,wBAAsB,cAAc,CAAC,WAAW,GAAE,MAAM,GAAG,IAAW,GAAG,OAAO,CAAC,YAAY,CAAC,CA2F7F;AAED;;GAEG;AACH,wBAAsB,gBAAgB,IAAI,OAAO,CAAC,OAAO,EAAE,CAAC,CAyC3D"}
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+ /**
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+ * MCP Analysis Orchestration
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+ */
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+ import { Orchestrator } from '@grafema/core';
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+ import { getOrCreateBackend, getProjectPath, getIsAnalyzed, setIsAnalyzed, getAnalysisStatus, setAnalysisStatus, } from './state.js';
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+ import { loadConfig, loadCustomPlugins, BUILTIN_PLUGINS } from './config.js';
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+ import { log } from './utils.js';
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+ /**
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+ * Ensure project is analyzed, optionally filtering to a single service
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+ */
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+ export async function ensureAnalyzed(serviceName = null) {
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+ const db = await getOrCreateBackend();
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+ const projectPath = getProjectPath();
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+ const isAnalyzed = getIsAnalyzed();
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+ if (!isAnalyzed || serviceName) {
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+ log(`[Grafema MCP] Analyzing project: ${projectPath}${serviceName ? ` (service: ${serviceName})` : ''}`);
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+ const config = loadConfig(projectPath);
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+ const { pluginMap: customPluginMap } = await loadCustomPlugins(projectPath);
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+ // Merge builtin and custom plugins
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+ const availablePlugins = {
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+ ...BUILTIN_PLUGINS,
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+ ...Object.fromEntries(Object.entries(customPluginMap).map(([name, PluginClass]) => [
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+ name,
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+ () => new PluginClass(),
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+ ])),
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+ };
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+ // Build plugin list from config
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+ const plugins = [];
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+ for (const [phase, pluginNames] of Object.entries(config.plugins || {})) {
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+ for (const name of pluginNames) {
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+ const factory = availablePlugins[name];
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+ if (factory) {
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+ plugins.push(factory());
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+ log(`[Grafema MCP] Enabled plugin: ${name} (${phase})`);
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+ }
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+ else {
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+ log(`[Grafema MCP] Warning: Unknown plugin ${name} in config`);
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+ }
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+ }
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+ }
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+ log(`[Grafema MCP] Total plugins: ${plugins.length}`);
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+ // Check for parallel analysis config
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+ const parallelConfig = config.analysis?.parallel;
44
+ log(`[Grafema MCP] Config analysis section: ${JSON.stringify(config.analysis)}`);
45
+ if (parallelConfig?.enabled) {
46
+ log(`[Grafema MCP] Parallel analysis enabled: maxWorkers=${parallelConfig.maxWorkers || 'auto'}, socket=${parallelConfig.socketPath || '/tmp/rfdb.sock'}`);
47
+ }
48
+ const analysisStatus = getAnalysisStatus();
49
+ const startTime = Date.now();
50
+ const orchestrator = new Orchestrator({
51
+ graph: db,
52
+ plugins: plugins,
53
+ parallel: parallelConfig,
54
+ serviceFilter: serviceName,
55
+ onProgress: (progress) => {
56
+ log(`[Grafema MCP] ${progress.phase}: ${progress.message}`);
57
+ setAnalysisStatus({
58
+ phase: progress.phase,
59
+ message: progress.message,
60
+ servicesDiscovered: progress.servicesDiscovered || analysisStatus.servicesDiscovered,
61
+ servicesAnalyzed: progress.servicesAnalyzed || analysisStatus.servicesAnalyzed,
62
+ });
63
+ },
64
+ });
65
+ await orchestrator.run(projectPath);
66
+ // Flush if available
67
+ if ('flush' in db && typeof db.flush === 'function') {
68
+ await db.flush();
69
+ }
70
+ setIsAnalyzed(true);
71
+ const totalTime = ((Date.now() - startTime) / 1000).toFixed(2);
72
+ setAnalysisStatus({
73
+ timings: {
74
+ ...analysisStatus.timings,
75
+ total: parseFloat(totalTime),
76
+ },
77
+ });
78
+ log(`[Grafema MCP] ✅ Analysis complete in ${totalTime}s`);
79
+ }
80
+ return db;
81
+ }
82
+ /**
83
+ * Discover services without running full analysis
84
+ */
85
+ export async function discoverServices() {
86
+ const db = await getOrCreateBackend();
87
+ const projectPath = getProjectPath();
88
+ log(`[Grafema MCP] Discovering services in: ${projectPath}`);
89
+ const config = loadConfig(projectPath);
90
+ const { pluginMap: customPluginMap } = await loadCustomPlugins(projectPath);
91
+ const availablePlugins = {
92
+ ...Object.fromEntries(Object.entries(customPluginMap).map(([name, PluginClass]) => [
93
+ name,
94
+ () => new PluginClass(),
95
+ ])),
96
+ };
97
+ const plugins = [];
98
+ const discoveryPluginNames = config.plugins?.discovery || [];
99
+ for (const name of discoveryPluginNames) {
100
+ const factory = availablePlugins[name];
101
+ if (factory) {
102
+ plugins.push(factory());
103
+ log(`[Grafema MCP] Enabled discovery plugin: ${name}`);
104
+ }
105
+ else {
106
+ log(`[Grafema MCP] Warning: Unknown discovery plugin ${name}`);
107
+ }
108
+ }
109
+ const orchestrator = new Orchestrator({
110
+ graph: db,
111
+ plugins: plugins,
112
+ });
113
+ const manifest = await orchestrator.discover(projectPath);
114
+ log(`[Grafema MCP] Discovery complete: found ${manifest.services?.length || 0} services`);
115
+ return manifest.services || [];
116
+ }
@@ -0,0 +1,34 @@
1
+ /**
2
+ * MCP Server Configuration
3
+ */
4
+ export interface PluginConfig {
5
+ indexing: string[];
6
+ analysis: string[];
7
+ enrichment: string[];
8
+ validation: string[];
9
+ discovery?: string[];
10
+ }
11
+ export interface ProjectConfig {
12
+ plugins: PluginConfig;
13
+ discovery: {
14
+ enabled: boolean;
15
+ customOnly: boolean;
16
+ };
17
+ analysis?: {
18
+ service?: string;
19
+ };
20
+ backend?: 'local' | 'rfdb';
21
+ rfdb_socket?: string;
22
+ }
23
+ export declare const DEFAULT_CONFIG: ProjectConfig;
24
+ type PluginFactory = () => unknown;
25
+ export declare const BUILTIN_PLUGINS: Record<string, PluginFactory>;
26
+ export declare function loadConfig(projectPath: string): ProjectConfig;
27
+ export interface CustomPluginResult {
28
+ plugins: unknown[];
29
+ pluginMap: Record<string, new () => unknown>;
30
+ }
31
+ export declare function loadCustomPlugins(projectPath: string): Promise<CustomPluginResult>;
32
+ export declare function createPlugins(pluginNames: string[], customPluginMap?: Record<string, new () => unknown>): unknown[];
33
+ export {};
34
+ //# sourceMappingURL=config.d.ts.map
@@ -0,0 +1 @@
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