@grafema/cli 0.2.5-beta → 0.2.6-beta

package/dist/commands/analyzeAction.js

@@ -0,0 +1,243 @@
+/**
+ * Analyze command action — connects to RFDB, loads plugins, runs Orchestrator.
+ *
+ * Extracted from analyze.ts (REG-435) to keep command definition separate
+ * from execution logic.
+ */
+import { resolve, join } from 'path';
+import { existsSync, mkdirSync } from 'fs';
+import { Orchestrator, RFDBServerBackend, DiagnosticReporter, DiagnosticWriter, createLogger, loadConfig, StrictModeFailure, } from '@grafema/core';
+import { ProgressRenderer } from '../utils/progressRenderer.js';
+import { loadCustomPlugins, createPlugins } from '../plugins/pluginLoader.js';
+export async function fetchNodeEdgeCounts(backend) {
+    const [nodeCount, edgeCount] = await Promise.all([backend.nodeCount(), backend.edgeCount()]);
+    return { nodeCount, edgeCount };
+}
+export function exitWithCode(code, exitFn = process.exit) {
+    exitFn(code);
+}
+/**
+ * Determine log level from CLI options.
+ * Priority: --log-level > --quiet > --verbose > default ('silent')
+ *
+ * By default, logs are silent to allow clean progress UI.
+ * Use --verbose to see detailed logs (disables interactive progress).
+ */
+function getLogLevel(options) {
+    if (options.logLevel) {
+        const validLevels = ['silent', 'errors', 'warnings', 'info', 'debug'];
+        if (validLevels.includes(options.logLevel)) {
+            return options.logLevel;
+        }
+    }
+    if (options.quiet)
+        return 'silent';
+    if (options.verbose)
+        return 'info'; // --verbose shows logs instead of progress UI
+    return 'silent'; // Default: silent logs, clean progress UI
+}
+export async function analyzeAction(path, options) {
+    const projectPath = resolve(path);
+    const grafemaDir = join(projectPath, '.grafema');
+    const dbPath = join(grafemaDir, 'graph.rfdb');
+    if (!existsSync(grafemaDir)) {
+        mkdirSync(grafemaDir, { recursive: true });
+    }
+    // Two log levels for CLI output:
+    // - info: important results (shows unless --quiet)
+    // - debug: verbose details (shows only with --verbose)
+    const info = options.quiet ? () => { } : console.log;
+    const debug = options.verbose ? console.log : () => { };
+    // Create logger based on CLI flags
+    const logLevel = getLogLevel(options);
+    const logFile = options.logFile ? resolve(options.logFile) : undefined;
+    const logger = createLogger(logLevel, logFile ? { logFile } : undefined);
+    if (logFile) {
+        debug(`Log file: ${logFile}`);
+    }
+    debug(`Analyzing project: ${projectPath}`);
+    // Connect to RFDB server
+    // Default: require explicit `grafema server start`
+    // Use --auto-start for CI or backwards compatibility
+    // In normal mode (not verbose), suppress backend logs for clean progress UI
+    const backend = new RFDBServerBackend({
+        dbPath,
+        autoStart: options.autoStart ?? false,
+        silent: !options.verbose // Silent in normal mode (show progress), verbose shows logs
+    });
+    try {
+        await backend.connect();
+    }
+    catch (err) {
+        if (!options.autoStart && err instanceof Error && err.message.includes('not running')) {
+            console.error('');
+            console.error('RFDB server is not running.');
+            console.error('');
+            console.error('Start the server first:');
+            console.error('  grafema server start');
+            console.error('');
+            console.error('Or use --auto-start flag:');
+            console.error('  grafema analyze --auto-start');
+            console.error('');
+            process.exit(1);
+        }
+        throw err;
+    }
+    if (options.clear) {
+        debug('Clearing existing database...');
+        await backend.clear();
+    }
+    const config = loadConfig(projectPath, logger);
+    // Extract services from config (REG-174)
+    if (config.services.length > 0) {
+        debug(`Loaded ${config.services.length} service(s) from config`);
+        for (const svc of config.services) {
+            const entry = svc.entryPoint ? ` (entry: ${svc.entryPoint})` : '';
+            debug(`  - ${svc.name}: ${svc.path}${entry}`);
+        }
+    }
+    // Load custom plugins from .grafema/plugins/
+    const customPlugins = await loadCustomPlugins(projectPath, debug);
+    const plugins = createPlugins(config.plugins, customPlugins, options.verbose);
+    debug(`Loaded ${plugins.length} plugins`);
+    // Resolve strict mode: CLI flag overrides config
+    const strictMode = options.strict ?? config.strict ?? false;
+    if (strictMode) {
+        debug('Strict mode enabled - analysis will fail on unresolved references');
+    }
+    const startTime = Date.now();
+    // Create progress renderer for CLI output
+    // In quiet mode, use a no-op renderer (skip rendering)
+    // In verbose mode, use non-interactive (newlines per update)
+    // In normal mode, use interactive (spinner with line overwrite)
+    const renderer = options.quiet
+        ? null
+        : new ProgressRenderer({
+            isInteractive: !options.verbose && process.stdout.isTTY,
+        });
+    // Poll graph stats periodically to show node/edge counts in progress
+    let statsInterval = null;
+    if (renderer && !options.quiet) {
+        statsInterval = setInterval(async () => {
+            try {
+                const stats = await fetchNodeEdgeCounts(backend);
+                renderer.setStats(stats.nodeCount, stats.edgeCount);
+            }
+            catch {
+                // Ignore stats errors during analysis
+            }
+        }, 500); // Poll every 500ms
+        statsInterval.unref?.();
+    }
+    const orchestrator = new Orchestrator({
+        graph: backend,
+        plugins,
+        serviceFilter: options.service || null,
+        entrypoint: options.entrypoint,
+        forceAnalysis: options.clear || false,
+        logger,
+        services: config.services.length > 0 ? config.services : undefined, // Pass config services (REG-174)
+        strictMode, // REG-330: Pass strict mode flag
+        onProgress: (progress) => {
+            renderer?.update(progress);
+        },
+    });
+    let exitCode = 0;
+    try {
+        await orchestrator.run(projectPath);
+        await backend.flush();
+        const elapsedSeconds = (Date.now() - startTime) / 1000;
+        const stats = await fetchNodeEdgeCounts(backend);
+        // Clear progress line in interactive mode, then show results
+        if (renderer && process.stdout.isTTY) {
+            process.stdout.write('\r\x1b[K'); // Clear line
+        }
+        info('');
+        info(renderer ? renderer.finish(elapsedSeconds) : `Analysis complete in ${elapsedSeconds.toFixed(2)}s`);
+        info(`  Nodes: ${stats.nodeCount}`);
+        info(`  Edges: ${stats.edgeCount}`);
+        // Get diagnostics and report summary
+        const diagnostics = orchestrator.getDiagnostics();
+        const reporter = new DiagnosticReporter(diagnostics);
+        // Print summary if there are any issues
+        if (diagnostics.count() > 0) {
+            info('');
+            info(reporter.categorizedSummary());
+            // In verbose mode, print full report
+            if (options.verbose) {
+                debug('');
+                debug(reporter.report({ format: 'text', includeSummary: false }));
+            }
+        }
+        // Always write diagnostics.log (required for `grafema check` command)
+        const writer = new DiagnosticWriter();
+        await writer.write(diagnostics, grafemaDir);
+        if (options.debug) {
+            debug(`Diagnostics written to ${writer.getLogPath(grafemaDir)}`);
+        }
+        // Determine exit code based on severity
+        if (diagnostics.hasFatal()) {
+            exitCode = 1;
+        }
+        else if (diagnostics.hasErrors()) {
+            exitCode = 2; // Completed with errors
+        }
+        else {
+            exitCode = 0; // Success (maybe warnings)
+        }
+    }
+    catch (e) {
+        const diagnostics = orchestrator.getDiagnostics();
+        const reporter = new DiagnosticReporter(diagnostics);
+        // Clear progress line in interactive mode
+        if (renderer && process.stdout.isTTY) {
+            process.stdout.write('\r\x1b[K');
+        }
+        // Check if this is a strict mode failure (REG-332: structured output)
+        if (e instanceof StrictModeFailure) {
+            // Format ONLY from diagnostics, not from error.message
+            console.error('');
+            console.error(`✗ Strict mode: ${e.count} unresolved reference(s) found during ENRICHMENT.`);
+            console.error('');
+            console.error(reporter.formatStrict(e.diagnostics, {
+                verbose: options.verbose,
+                suppressedCount: e.suppressedCount, // REG-332
+            }));
+            console.error('');
+            console.error('Run without --strict for graceful degradation, or fix the underlying issues.');
+        }
+        else {
+            // Generic error handling (non-strict)
+            const error = e instanceof Error ? e : new Error(String(e));
+            console.error('');
+            console.error(`✗ Analysis failed: ${error.message}`);
+            console.error('');
+            console.error('→ Run with --debug for detailed diagnostics');
+            if (diagnostics.count() > 0) {
+                console.error('');
+                console.error(reporter.report({ format: 'text', includeSummary: true }));
+            }
+        }
+        // Write diagnostics.log in debug mode even on failure
+        if (options.debug) {
+            const writer = new DiagnosticWriter();
+            await writer.write(diagnostics, grafemaDir);
+            console.error(`Diagnostics written to ${writer.getLogPath(grafemaDir)}`);
+        }
+        exitCode = 1;
+    }
+    finally {
+        // Stop stats polling
+        if (statsInterval) {
+            clearInterval(statsInterval);
+            statsInterval = null;
+        }
+        if (backend.connected) {
+            await backend.close();
+        }
+        // Exit with appropriate code
+        // 0 = success, 1 = fatal, 2 = errors
+        exitWithCode(exitCode);
+    }
+}
+//# sourceMappingURL=analyzeAction.js.map

package/dist/commands/analyzeAction.js.map

@@ -0,0 +1 @@
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package/dist/commands/check.js

@@ -104,7 +104,7 @@ Examples:
     await backend.connect();
     // Check graph freshness
     const freshnessChecker = new GraphFreshnessChecker();
-    const freshness = await freshnessChecker.checkFreshness(backend);
+    const freshness = await freshnessChecker.checkFreshness(backend, projectPath);
     if (!freshness.isFresh) {
         if (options.failOnStale) {
             console.error(`✗ Graph is stale: ${freshness.staleCount} module(s) changed`);
@@ -234,7 +234,7 @@ async function runBuiltInValidator(guaranteeName, projectPath, options) {
     await backend.connect();
     // Check graph freshness
     const freshnessChecker = new GraphFreshnessChecker();
-    const freshness = await freshnessChecker.checkFreshness(backend);
+    const freshness = await freshnessChecker.checkFreshness(backend, resolvedPath);
     if (!freshness.isFresh) {
         if (options.failOnStale) {
             console.error(`✗ Graph is stale: ${freshness.staleCount} module(s) changed`);

package/dist/commands/check.js.map

@@ -1 +1 @@
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package/dist/commands/context.d.ts

@@ -0,0 +1,16 @@
+/**
+ * Context command — Show deep context for a graph node
+ *
+ * Displays the full graph neighborhood: source code + all incoming/outgoing edges
+ * with code context at each connected node's location.
+ *
+ * Works for ANY node type: FUNCTION, VARIABLE, MODULE, http:route, CALL, etc.
+ *
+ * Output is grep-friendly with stable prefixes:
+ *   -> outgoing edges
+ *   <- incoming edges
+ *   >  highlighted source lines
+ */
+import { Command } from 'commander';
+export declare const contextCommand: Command;
+//# sourceMappingURL=context.d.ts.map

package/dist/commands/context.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"context.d.ts","sourceRoot":"","sources":["../../src/commands/context.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;GAYG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AA6BpC,eAAO,MAAM,cAAc,SA0EvB,CAAC"}

package/dist/commands/context.js

@@ -0,0 +1,238 @@
+/**
+ * Context command — Show deep context for a graph node
+ *
+ * Displays the full graph neighborhood: source code + all incoming/outgoing edges
+ * with code context at each connected node's location.
+ *
+ * Works for ANY node type: FUNCTION, VARIABLE, MODULE, http:route, CALL, etc.
+ *
+ * Output is grep-friendly with stable prefixes:
+ *   -> outgoing edges
+ *   <- incoming edges
+ *   >  highlighted source lines
+ */
+import { Command } from 'commander';
+import { resolve, join } from 'path';
+import { existsSync } from 'fs';
+import { RFDBServerBackend, buildNodeContext, getNodeDisplayName, formatEdgeMetadata, STRUCTURAL_EDGE_TYPES, } from '@grafema/core';
+import { getCodePreview, formatCodePreview } from '../utils/codePreview.js';
+import { formatLocation } from '../utils/formatNode.js';
+import { exitWithError } from '../utils/errorFormatter.js';
+import { Spinner } from '../utils/spinner.js';
+export const contextCommand = new Command('context')
+    .description('Show deep context for a graph node: source code + graph neighborhood')
+    .argument('<semanticId>', 'Semantic ID of the node (exact match)')
+    .option('-p, --project <path>', 'Project path', '.')
+    .option('-j, --json', 'Output as JSON (full dump, no filtering)')
+    .option('-l, --lines <n>', 'Context lines around each code reference', '3')
+    .option('-e, --edge-type <type>', `Filter edges by type (e.g., CALLS, ASSIGNED_FROM, DEPENDS_ON)
+
+Multiple types can be comma-separated: --edge-type CALLS,ASSIGNED_FROM
+
+Examples:
+  grafema context <id> --edge-type CALLS
+  grafema context <id> -e DEPENDS_ON,IMPORTS_FROM`)
+    .addHelpText('after', `
+Output format (grep-friendly):
+  ->  outgoing edge (this node points to)
+  <-  incoming edge (points to this node)
+  >   highlighted source line
+
+Examples:
+  grafema context "src/app.js->global->FUNCTION->main"
+  grafema context "http:route#POST#/api/users" --edge-type ROUTES_TO,HANDLED_BY
+  grafema context <id> --json
+  grafema context <id> | grep "CALLS"
+  grafema context <id> | grep "<-"
+`)
+    .action(async (semanticId, options) => {
+    const projectPath = resolve(options.project);
+    const grafemaDir = join(projectPath, '.grafema');
+    const dbPath = join(grafemaDir, 'graph.rfdb');
+    if (!existsSync(dbPath)) {
+        exitWithError('No graph database found', ['Run: grafema analyze']);
+    }
+    const backend = new RFDBServerBackend({ dbPath });
+    await backend.connect();
+    const spinner = new Spinner('Loading context...');
+    spinner.start();
+    try {
+        const contextLines = parseInt(options.lines, 10);
+        const edgeTypeFilter = options.edgeType
+            ? new Set(options.edgeType.split(',').map(t => t.trim().toUpperCase()))
+            : null;
+        // 1. Look up node by exact semantic ID
+        const node = await backend.getNode(semanticId);
+        if (!node) {
+            spinner.stop();
+            exitWithError(`Node not found: "${semanticId}"`, [
+                'Use: grafema query "<name>" to find the correct semantic ID',
+            ]);
+        }
+        // 2. Build context (with CLASS member expansion)
+        const ctx = await buildContextWithMembers(backend, node, { contextLines, edgeTypeFilter });
+        spinner.stop();
+        // 3. Output
+        if (options.json) {
+            console.log(JSON.stringify(ctx, null, 2));
+        }
+        else {
+            printContext(ctx, projectPath, contextLines);
+        }
+    }
+    finally {
+        spinner.stop();
+        await backend.close();
+    }
+});
+/**
+ * Build context with CLASS member expansion (REG-411)
+ */
+async function buildContextWithMembers(backend, node, options) {
+    const ctx = await buildNodeContext(backend, node, options);
+    let memberContexts;
+    if (node.type === 'CLASS') {
+        const outEdges = await backend.getOutgoingEdges(node.id);
+        const containsEdges = outEdges.filter(e => e.type === 'CONTAINS');
+        const members = [];
+        for (const edge of containsEdges) {
+            const memberNode = await backend.getNode(edge.dst);
+            if (memberNode && (memberNode.type === 'FUNCTION' || memberNode.type === 'METHOD')) {
+                const memberCtx = await buildNodeContext(backend, memberNode, options);
+                members.push(memberCtx);
+            }
+        }
+        members.sort((a, b) => {
+            const lineA = a.node.line ?? 0;
+            const lineB = b.node.line ?? 0;
+            return lineA - lineB;
+        });
+        if (members.length > 0) {
+            memberContexts = members;
+        }
+    }
+    return { ...ctx, memberContexts };
+}
+/**
+ * Print context to stdout in grep-friendly format
+ */
+function printContext(ctx, projectPath, contextLines) {
+    const { node, source, outgoing, incoming } = ctx;
+    // Node header
+    const displayName = getNodeDisplayName(node);
+    console.log(`[${node.type}] ${displayName}`);
+    console.log(`  ID: ${node.id}`);
+    const loc = formatLocation(node.file, node.line, projectPath);
+    if (loc) {
+        console.log(`  Location: ${loc}`);
+    }
+    // Source code
+    if (source) {
+        console.log('');
+        console.log(`  Source (lines ${source.startLine}-${source.endLine}):`);
+        const formatted = formatCodePreview({ lines: source.lines, startLine: source.startLine, endLine: source.endLine }, node.line);
+        for (const line of formatted) {
+            console.log(`    ${line}`);
+        }
+    }
+    // Outgoing edges
+    if (outgoing.length > 0) {
+        console.log('');
+        console.log('  Outgoing edges:');
+        for (const group of outgoing) {
+            printEdgeGroup(group, '->', projectPath, contextLines);
+        }
+    }
+    // Incoming edges
+    if (incoming.length > 0) {
+        console.log('');
+        console.log('  Incoming edges:');
+        for (const group of incoming) {
+            printEdgeGroup(group, '<-', projectPath, contextLines);
+        }
+    }
+    // Member methods (CLASS nodes)
+    if (ctx.memberContexts && ctx.memberContexts.length > 0) {
+        console.log('');
+        console.log(`  Methods (${ctx.memberContexts.length}):`);
+        for (const memberCtx of ctx.memberContexts) {
+            console.log('');
+            console.log(`  ── [${memberCtx.node.type}] ${getNodeDisplayName(memberCtx.node)}`);
+            const memberLoc = formatLocation(memberCtx.node.file, memberCtx.node.line, projectPath);
+            if (memberLoc) {
+                console.log(`     Location: ${memberLoc}`);
+            }
+            // Method source code
+            if (memberCtx.source) {
+                console.log('');
+                console.log(`     Source (lines ${memberCtx.source.startLine}-${memberCtx.source.endLine}):`);
+                const formatted = formatCodePreview({
+                    lines: memberCtx.source.lines,
+                    startLine: memberCtx.source.startLine,
+                    endLine: memberCtx.source.endLine,
+                }, memberCtx.node.line);
+                for (const line of formatted) {
+                    console.log(`       ${line}`);
+                }
+            }
+            // Method edges (non-structural only, to avoid clutter)
+            const methodOutgoing = memberCtx.outgoing.filter(g => !STRUCTURAL_EDGE_TYPES.has(g.edgeType));
+            const methodIncoming = memberCtx.incoming.filter(g => !STRUCTURAL_EDGE_TYPES.has(g.edgeType));
+            if (methodOutgoing.length > 0) {
+                console.log('');
+                console.log('     Outgoing edges:');
+                for (const group of methodOutgoing) {
+                    printEdgeGroup(group, '->', projectPath, contextLines, '       ');
+                }
+            }
+            if (methodIncoming.length > 0) {
+                console.log('');
+                console.log('     Incoming edges:');
+                for (const group of methodIncoming) {
+                    printEdgeGroup(group, '<-', projectPath, contextLines, '       ');
+                }
+            }
+        }
+    }
+    // Summary if no edges and no members
+    if (outgoing.length === 0 && incoming.length === 0 && !ctx.memberContexts?.length) {
+        console.log('');
+        console.log('  No edges found.');
+    }
+}
+/**
+ * Print a group of edges with the same type
+ */
+function printEdgeGroup(group, direction, projectPath, contextLines, indent = '    ') {
+    const isStructural = STRUCTURAL_EDGE_TYPES.has(group.edgeType);
+    console.log(`${indent}${group.edgeType} (${group.edges.length}):`);
+    for (const { edge, node } of group.edges) {
+        if (!node) {
+            const danglingId = direction === '->' ? edge.dst : edge.src;
+            console.log(`${indent}  ${direction} [dangling] ${danglingId}`);
+            continue;
+        }
+        const displayName = getNodeDisplayName(node);
+        const loc = formatLocation(node.file, node.line, projectPath);
+        const locStr = loc ? `  (${loc})` : '';
+        // Edge metadata inline (if present and useful)
+        const metaStr = formatEdgeMetadata(edge);
+        console.log(`${indent}  ${direction} [${node.type}] ${displayName}${locStr}${metaStr}`);
+        // Code context for non-structural edges
+        if (!isStructural && node.file && node.line && contextLines > 0) {
+            const preview = getCodePreview({
+                file: node.file,
+                line: node.line,
+                contextBefore: Math.min(contextLines, 2),
+                contextAfter: Math.min(contextLines, 2),
+            });
+            if (preview) {
+                const formatted = formatCodePreview(preview, node.line);
+                for (const line of formatted) {
+                    console.log(`${indent}       ${line}`);
+                }
+            }
+        }
+    }
+}
+//# sourceMappingURL=context.js.map

package/dist/commands/context.js.map

@@ -0,0 +1 @@
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package/dist/commands/doctor/checks.js

@@ -455,7 +455,7 @@ export async function checkFreshness(projectPath) {
     try {
         await backend.connect();
         const freshnessChecker = new GraphFreshnessChecker();
-        const result = await freshnessChecker.checkFreshness(backend);
+        const result = await freshnessChecker.checkFreshness(backend, projectPath);
         await backend.close();
         if (result.isFresh) {
             return {