@grafema/cli 0.2.12-beta → 0.3.1-beta

package/dist/plugins/pluginLoader.js

@@ -1,101 +1,3 @@
-/**
- * Plugin loading — resolves built-in and custom plugins from config.
- *
- * Handles:
- * - ESM resolve hook for custom plugin @grafema/* imports
- * - Loading custom plugins from .grafema/plugins/
- * - Creating plugin instances from config phases
- */
-import { join } from 'path';
-import { existsSync, readdirSync } from 'fs';
-import { pathToFileURL } from 'url';
-import { register } from 'node:module';
-import { BUILTIN_PLUGINS } from './builtinPlugins.js';
-/**
- * Register ESM resolve hook so custom plugins can import @grafema/* packages.
- *
- * Plugins in .grafema/plugins/ do `import { Plugin } from '@grafema/core'`,
- * but @grafema/core isn't in the target project's node_modules/.
- * This hook redirects those imports to the CLI's bundled packages.
- *
- * Uses module.register() (stable Node.js 20.6+ API).
- * Safe to call multiple times — subsequent calls add redundant hooks
- * that short-circuit on the same specifiers.
- */
-let pluginResolverRegistered = false;
-export function registerPluginResolver() {
-    if (pluginResolverRegistered)
-        return;
-    pluginResolverRegistered = true;
-    const grafemaPackages = {};
-    for (const pkg of ['@grafema/core', '@grafema/types']) {
-        try {
-            grafemaPackages[pkg] = import.meta.resolve(pkg);
-        }
-        catch {
-            // Package not available from CLI context — skip
-        }
-    }
-    register(new URL('./pluginResolver.js', import.meta.url), { data: { grafemaPackages } });
-}
-/**
- * Load custom plugins from .grafema/plugins/ directory
- */
-export async function loadCustomPlugins(projectPath, log) {
-    const pluginsDir = join(projectPath, '.grafema', 'plugins');
-    if (!existsSync(pluginsDir)) {
-        return {};
-    }
-    // Ensure @grafema/* imports resolve for custom plugins (REG-380)
-    registerPluginResolver();
-    const customPlugins = {};
-    try {
-        const files = readdirSync(pluginsDir).filter((f) => f.endsWith('.js') || f.endsWith('.mjs') || f.endsWith('.cjs'));
-        for (const file of files) {
-            try {
-                const pluginPath = join(pluginsDir, file);
-                const pluginUrl = pathToFileURL(pluginPath).href;
-                const module = await import(pluginUrl);
-                const PluginClass = module.default || module[file.replace(/\.[cm]?js$/, '')];
-                if (PluginClass && typeof PluginClass === 'function') {
-                    const pluginName = PluginClass.name || file.replace(/\.[cm]?js$/, '');
-                    customPlugins[pluginName] = () => {
-                        const instance = new PluginClass();
-                        instance.config.sourceFile = pluginPath;
-                        return instance;
-                    };
-                    log(`Loaded custom plugin: ${pluginName}`);
-                }
-            }
-            catch (err) {
-                const message = err instanceof Error ? err.message : String(err);
-                console.warn(`Failed to load plugin ${file}: ${message}`);
-            }
-        }
-    }
-    catch (err) {
-        const message = err instanceof Error ? err.message : String(err);
-        console.warn(`Error loading custom plugins: ${message}`);
-    }
-    return customPlugins;
-}
-export function createPlugins(config, customPlugins = {}, verbose = false) {
-    const plugins = [];
-    const phases = ['discovery', 'indexing', 'analysis', 'enrichment', 'validation'];
-    for (const phase of phases) {
-        const names = config[phase] || [];
-        for (const name of names) {
-            // Check built-in first, then custom
-            const factory = BUILTIN_PLUGINS[name] || customPlugins[name];
-            if (factory) {
-                plugins.push(factory());
-            }
-            else if (verbose) {
-                // Only show plugin warning in verbose mode
-                console.warn(`Plugin not found: ${name} (skipping). Check .grafema/config.yaml or add to .grafema/plugins/`);
-            }
-        }
-    }
-    return plugins;
-}
+export {};
+// Deleted: plugin loading moved to grafema-orchestrator (Rust).
 //# sourceMappingURL=pluginLoader.js.map

package/dist/plugins/pluginLoader.js.map

@@ -1 +1 @@
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+{"version":3,"file":"pluginLoader.js","sourceRoot":"","sources":["../../src/plugins/pluginLoader.ts"],"names":[],"mappings":";AAAA,gEAAgE"}

package/dist/plugins/pluginResolver.js

@@ -1,8 +1,8 @@
 /**
  * ESM resolve hook for custom Grafema plugins.
  *
- * Allows plugins in .grafema/plugins/ to `import { Plugin } from '@grafema/core'`
- * without requiring @grafema/core in the target project's node_modules/.
+ * Allows plugins in .grafema/plugins/ to `import { Plugin } from '@grafema/util'`
+ * without requiring @grafema/util in the target project's node_modules/.
  *
  * The hook maps @grafema/* bare specifiers to the actual package URLs
  * within the CLI's dependency tree.
@@ -26,7 +26,7 @@ export function initialize(data) {
  * Resolve hook — intercepts bare specifier imports for @grafema/* packages
  * and redirects them to the CLI's bundled versions.
  *
- * Only exact package name matches are handled (e.g. '@grafema/core').
+ * Only exact package name matches are handled (e.g. '@grafema/util').
  * All other specifiers pass through to the default resolver.
  */
 export function resolve(specifier, context, next) {

package/dist/utils/progressRenderer.d.ts

@@ -14,7 +14,21 @@
  * console.log(renderer.finish(elapsed));
  * ```
  */
-import type { ProgressInfo } from '@grafema/core';
+/**
+ * Progress information from the analysis pipeline.
+ * Defined locally to avoid dependency on @grafema/util.
+ */
+export interface ProgressInfo {
+    phase: string;
+    currentPlugin?: string;
+    message?: string;
+    servicesDiscovered?: number;
+    servicesAnalyzed?: number;
+    totalServices?: number;
+    totalFiles?: number;
+    processedFiles?: number;
+    currentService?: string;
+}
 /**
  * Options for creating a ProgressRenderer instance.
  */

package/dist/utils/progressRenderer.d.ts.map

@@ -1 +1 @@
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package/dist/utils/progressRenderer.js.map

@@ -1 +1 @@
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+{"version":3,"file":"progressRenderer.js","sourceRoot":"","sources":["../../src/utils/progressRenderer.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;GAeG;AA8BH;;;;;;GAMG;AACH,MAAM,OAAO,gBAAgB;IACnB,MAAM,GAAa,CAAC,WAAW,EAAE,UAAU,EAAE,UAAU,EAAE,YAAY,EAAE,YAAY,CAAC,CAAC;IACrF,iBAAiB,GAAW,CAAC,CAAC,CAAC;IAC/B,YAAY,GAAW,EAAE,CAAC;IAC1B,aAAa,GAAW,EAAE,CAAC;IAC3B,OAAO,GAAW,EAAE,CAAC;IACrB,UAAU,GAAW,CAAC,CAAC;IACvB,cAAc,GAAW,CAAC,CAAC;IAC3B,gBAAgB,GAAW,CAAC,CAAC;IAC7B,aAAa,GAAW,CAAC,CAAC;IAC1B,cAAc,GAAW,EAAE,CAAC;IAC5B,YAAY,GAAW,CAAC,CAAC;IACzB,aAAa,CAAU;IACvB,SAAS,CAAS;IAClB,eAAe,GAAW,CAAC,CAAC;IAC5B,eAAe,CAAS;IACxB,KAAK,CAAyB;IAC9B,aAAa,GAAG,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAAC;IACnE,aAAa,GAAa,EAAE,CAAC;IAC7B,SAAS,GAAW,CAAC,CAAC;IACtB,SAAS,GAAW,CAAC,CAAC;IAE9B,YAAY,OAAiC;QAC3C,IAAI,CAAC,aAAa,GAAG,OAAO,EAAE,aAAa,IAAI,OAAO,CAAC,MAAM,CAAC,KAAK,IAAI,KAAK,CAAC;QAC7E,IAAI,CAAC,eAAe,GAAG,OAAO,EAAE,QAAQ,IAAI,GAAG,CAAC;QAChD,IAAI,CAAC,SAAS,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;QAC5B,IAAI,CAAC,KAAK,GAAG,OAAO,EAAE,KAAK,IAAI,CAAC,CAAC,IAAY,EAAE,EAAE,CAAC,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC;IAChF,CAAC;IAED;;;OAGG;IACH,MAAM,CAAC,IAAkB;QACvB,wBAAwB;QACxB,IAAI,IAAI,CAAC,KAAK,IAAI,IAAI,CAAC,KAAK,KAAK,IAAI,CAAC,YAAY,EAAE,CAAC;YACnD,IAAI,CAAC,YAAY,GAAG,IAAI,CAAC,KAAK,CAAC;YAC/B,MAAM,GAAG,GAAG,IAAI,CAAC,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;YAC5C,IAAI,GAAG,KAAK,CAAC,CAAC,EAAE,CAAC;gBACf,IAAI,CAAC,iBAAiB,GAAG,GAAG,CAAC;YAC/B,CAAC;YACD,6BAA6B;YAC7B,IAAI,CAAC,aAAa,GAAG,EAAE,CAAC;YACxB,IAAI,CAAC,cAAc,GAAG,EAAE,CAAC;YACzB,IAAI,CAAC,gBAAgB,GAAG,CAAC,CAAC;YAC1B,IAAI,CAAC,aAAa,GAAG,CAAC,CAAC;YACvB,IAAI,CAAC,cAAc,GAAG,CAAC,CAAC;YACxB,IAAI,CAAC,UAAU,GAAG,CAAC,CAAC;QACtB,CAAC;QAED,kCAAkC;QAClC,IAAI,IAAI,CAAC,aAAa,KAAK,SAAS,EAAE,CAAC;YACrC,IAAI,CAAC,aAAa,GAAG,IAAI,CAAC,aAAa,CAAC;YACxC,yDAAyD;YACzD,IAAI,CAAC,IAAI,CAAC,YAAY,KAAK,YAAY,IAAI,IAAI,CAAC,YAAY,KAAK,YAAY,CAAC;gBAC1E,IAAI,CAAC,aAAa,IAAI,CAAC,IAAI,CAAC,aAAa,CAAC,QAAQ,CAAC,IAAI,CAAC,aAAa,CAAC,EAAE,CAAC;gBAC3E,IAAI,CAAC,aAAa,CAAC,IAAI,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC;YAC9C,CAAC;QACH,CAAC;QACD,IAAI,IAAI,CAAC,OAAO,KAAK,SAAS,EAAE,CAAC;YAC/B,IAAI,CAAC,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC;QAC9B,CAAC;QACD,IAAI,IAAI,CAAC,UAAU,KAAK,SAAS,EAAE,CAAC;YAClC,IAAI,CAAC,UAAU,GAAG,IAAI,CAAC,UAAU,CAAC;QACpC,CAAC;QACD,IAAI,IAAI,CAAC,cAAc,KAAK,SAAS,EAAE,CAAC;YACtC,IAAI,CAAC,cAAc,GAAG,IAAI,CAAC,cAAc,CAAC;QAC5C,CAAC;QACD,IAAI,IAAI,CAAC,gBAAgB,KAAK,SAAS,EAAE,CAAC;YACxC,IAAI,CAAC,gBAAgB,GAAG,IAAI,CAAC,gBAAgB,CAAC;QAChD,CAAC;QACD,IAAI,IAAI,CAAC,aAAa,KAAK,SAAS,EAAE,CAAC;YACrC,IAAI,CAAC,aAAa,GAAG,IAAI,CAAC,aAAa,CAAC;QAC1C,CAAC;QACD,IAAI,IAAI,CAAC,cAAc,KAAK,SAAS,EAAE,CAAC;YACtC,IAAI,CAAC,cAAc,GAAG,IAAI,CAAC,cAAc,CAAC;QAC5C,CAAC;QAED,iBAAiB;QACjB,IAAI,CAAC,YAAY,GAAG,CAAC,IAAI,CAAC,YAAY,GAAG,CAAC,CAAC,GAAG,IAAI,CAAC,aAAa,CAAC,MAAM,CAAC;QAExE,mBAAmB;QACnB,MAAM,GAAG,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;QACvB,IAAI,GAAG,GAAG,IAAI,CAAC,eAAe,GAAG,IAAI,CAAC,eAAe,EAAE,CAAC;YACtD,OAAO;QACT,CAAC;QACD,IAAI,CAAC,eAAe,GAAG,GAAG,CAAC;QAE3B,IAAI,CAAC,OAAO,EAAE,CAAC;IACjB,CAAC;IAED;;;OAGG;IACH,QAAQ,CAAC,SAAiB,EAAE,SAAiB;QAC3C,IAAI,CAAC,SAAS,GAAG,SAAS,CAAC;QAC3B,IAAI,CAAC,SAAS,GAAG,SAAS,CAAC;IAC7B,CAAC;IAED;;OAEG;IACK,OAAO;QACb,MAAM,MAAM,GAAG,IAAI,CAAC,YAAY,EAAE,CAAC;QAEnC,IAAI,IAAI,CAAC,aAAa,EAAE,CAAC;YACvB,0EAA0E;YAC1E,MAAM,MAAM,GAAG,MAAM,CAAC,MAAM,CAAC,EAAE,EAAE,GAAG,CAAC,CAAC;YACtC,IAAI,CAAC,KAAK,CAAC,KAAK,MAAM,EAAE,CAAC,CAAC;QAC5B,CAAC;aAAM,CAAC;YACN,+BAA+B;YAC/B,IAAI,CAAC,KAAK,CAAC,GAAG,MAAM,IAAI,CAAC,CAAC;QAC5B,CAAC;IACH,CAAC;IAEO,YAAY;QAClB,IAAI,IAAI,CAAC,aAAa,EAAE,CAAC;YACvB,OAAO,IAAI,CAAC,iBAAiB,EAAE,CAAC;QAClC,CAAC;aAAM,CAAC;YACN,OAAO,IAAI,CAAC,oBAAoB,EAAE,CAAC;QACrC,CAAC;IACH,CAAC;IAED;;OAEG;IACK,aAAa;QACnB,MAAM,OAAO,GAAG,CAAC,IAAI,CAAC,GAAG,EAAE,GAAG,IAAI,CAAC,SAAS,CAAC,GAAG,IAAI,CAAC;QACrD,IAAI,OAAO,GAAG,EAAE,EAAE,CAAC;YACjB,OAAO,GAAG,OAAO,CAAC,OAAO,CAAC,CAAC,CAAC,GAAG,CAAC;QAClC,CAAC;QACD,MAAM,OAAO,GAAG,IAAI,CAAC,KAAK,CAAC,OAAO,GAAG,EAAE,CAAC,CAAC;QACzC,MAAM,OAAO,GAAG,IAAI,CAAC,KAAK,CAAC,OAAO,GAAG,EAAE,CAAC,CAAC;QACzC,OAAO,GAAG,OAAO,IAAI,OAAO,GAAG,CAAC;IAClC,CAAC;IAEO,iBAAiB;QACvB,MAAM,OAAO,GAAG,IAAI,CAAC,aAAa,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC;QACtD,MAAM,OAAO,GAAG,IAAI,CAAC,aAAa,EAAE,CAAC;QACrC,MAAM,UAAU,GAAG,IAAI,CAAC,aAAa,EAAE,CAAC;QACxC,MAAM,QAAQ,GAAG,IAAI,CAAC,mBAAmB,EAAE,CAAC;QAC5C,MAAM,KAAK,GAAG,IAAI,CAAC,WAAW,EAAE,CAAC;QAEjC,oEAAoE;QACpE,OAAO,GAAG,OAAO,IAAI,UAAU,GAAG,QAAQ,MAAM,OAAO,GAAG,KAAK,EAAE,CAAC;IACpE,CAAC;IAEO,oBAAoB;QAC1B,MAAM,OAAO,GAAG,IAAI,CAAC,aAAa,EAAE,CAAC;QACrC,OAAO,IAAI,IAAI,CAAC,YAAY,KAAK,IAAI,CAAC,OAAO,IAAI,IAAI,CAAC,mBAAmB,EAAE,KAAK,OAAO,GAAG,CAAC;IAC7F,CAAC;IAED;;OAEG;IACK,WAAW;QACjB,IAAI,IAAI,CAAC,SAAS,KAAK,CAAC,IAAI,IAAI,CAAC,SAAS,KAAK,CAAC,EAAE,CAAC;YACjD,OAAO,EAAE,CAAC;QACZ,CAAC;QACD,MAAM,KAAK,GAAG,IAAI,CAAC,YAAY,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC;QAChD,MAAM,KAAK,GAAG,IAAI,CAAC,YAAY,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC;QAChD,OAAO,MAAM,KAAK,WAAW,KAAK,QAAQ,CAAC;IAC7C,CAAC;IAED;;OAEG;IACK,YAAY,CAAC,CAAS;QAC5B,IAAI,CAAC,IAAI,SAAS,EAAE,CAAC;YAC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package/dist/utils/queryHints.d.ts

@@ -0,0 +1,6 @@
+export declare function extractQueriedTypes(query: string): {
+    nodeTypes: string[];
+    edgeTypes: string[];
+};
+export declare function findSimilarTypes(queriedType: string, availableTypes: string[], maxDistance?: number): string[];
+//# sourceMappingURL=queryHints.d.ts.map

package/dist/utils/queryHints.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"queryHints.d.ts","sourceRoot":"","sources":["../../src/utils/queryHints.ts"],"names":[],"mappings":"AASA,wBAAgB,mBAAmB,CAAC,KAAK,EAAE,MAAM,GAAG;IAAE,SAAS,EAAE,MAAM,EAAE,CAAC;IAAC,SAAS,EAAE,MAAM,EAAE,CAAA;CAAE,CAkB/F;AAED,wBAAgB,gBAAgB,CAC9B,WAAW,EAAE,MAAM,EACnB,cAAc,EAAE,MAAM,EAAE,EACxB,WAAW,GAAE,MAAU,GACtB,MAAM,EAAE,CAYV"}

package/dist/utils/queryHints.js

@@ -0,0 +1,36 @@
+/**
+ * Query hint utilities for the CLI raw query path.
+ *
+ * Note: extractQueriedTypes() is intentionally duplicated from packages/mcp/src/utils.ts.
+ * The CLI cannot import @grafema/mcp (dependency direction). If the Datalog syntax changes,
+ * both copies must be updated.
+ */
+import { levenshtein } from '@grafema/util';
+export function extractQueriedTypes(query) {
+    const nodeTypes = [];
+    const edgeTypes = [];
+    // Match node(VAR, "TYPE") — only working node predicate.
+    // type(VAR, "TYPE") is excluded: Rust evaluator has no "type" branch.
+    const nodeRegex = /\bnode\([^,)]+,\s*"([^"]+)"\)/g;
+    let m;
+    while ((m = nodeRegex.exec(query)) !== null) {
+        nodeTypes.push(m[1]);
+    }
+    const edgeRegex = /\b(?:edge|incoming)\([^,)]+,\s*[^,)]+,\s*"([^"]+)"\)/g;
+    while ((m = edgeRegex.exec(query)) !== null) {
+        edgeTypes.push(m[1]);
+    }
+    return { nodeTypes, edgeTypes };
+}
+export function findSimilarTypes(queriedType, availableTypes, maxDistance = 2) {
+    const queriedLower = queriedType.toLowerCase();
+    const similar = [];
+    for (const type of availableTypes) {
+        const dist = levenshtein(queriedLower, type.toLowerCase());
+        if (dist <= maxDistance && (dist > 0 || queriedType !== type)) {
+            similar.push(type);
+        }
+    }
+    return similar;
+}
+//# sourceMappingURL=queryHints.js.map

package/dist/utils/queryHints.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"queryHints.js","sourceRoot":"","sources":["../../src/utils/queryHints.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AACH,OAAO,EAAE,WAAW,EAAE,MAAM,eAAe,CAAC;AAE5C,MAAM,UAAU,mBAAmB,CAAC,KAAa;IAC/C,MAAM,SAAS,GAAa,EAAE,CAAC;IAC/B,MAAM,SAAS,GAAa,EAAE,CAAC;IAE/B,yDAAyD;IACzD,sEAAsE;IACtE,MAAM,SAAS,GAAG,gCAAgC,CAAC;IACnD,IAAI,CAAyB,CAAC;IAC9B,OAAO,CAAC,CAAC,GAAG,SAAS,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,KAAK,IAAI,EAAE,CAAC;QAC5C,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IACvB,CAAC;IAED,MAAM,SAAS,GAAG,uDAAuD,CAAC;IAC1E,OAAO,CAAC,CAAC,GAAG,SAAS,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,KAAK,IAAI,EAAE,CAAC;QAC5C,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IACvB,CAAC;IAED,OAAO,EAAE,SAAS,EAAE,SAAS,EAAE,CAAC;AAClC,CAAC;AAED,MAAM,UAAU,gBAAgB,CAC9B,WAAmB,EACnB,cAAwB,EACxB,cAAsB,CAAC;IAEvB,MAAM,YAAY,GAAG,WAAW,CAAC,WAAW,EAAE,CAAC;IAC/C,MAAM,OAAO,GAAa,EAAE,CAAC;IAE7B,KAAK,MAAM,IAAI,IAAI,cAAc,EAAE,CAAC;QAClC,MAAM,IAAI,GAAG,WAAW,CAAC,YAAY,EAAE,IAAI,CAAC,WAAW,EAAE,CAAC,CAAC;QAC3D,IAAI,IAAI,IAAI,WAAW,IAAI,CAAC,IAAI,GAAG,CAAC,IAAI,WAAW,KAAK,IAAI,CAAC,EAAE,CAAC;YAC9D,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QACrB,CAAC;IACH,CAAC;IAED,OAAO,OAAO,CAAC;AACjB,CAAC"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@grafema/cli",
-  "version": "0.2.12-beta",
+  "version": "0.3.1-beta",
   "description": "CLI for Grafema code analysis toolkit",
   "type": "module",
   "main": "./dist/cli.js",
@@ -35,9 +35,9 @@
   "dependencies": {
     "commander": "^13.0.0",
     "yaml": "^2.8.2",
-    "@grafema/api": "0.2.12-beta",
-    "@grafema/core": "0.2.12-beta",
-    "@grafema/types": "0.2.12-beta"
+    "@grafema/api": "0.3.1-beta",
+    "@grafema/util": "0.3.1-beta",
+    "@grafema/types": "0.3.1-beta"
   },
   "devDependencies": {
     "@types/node": "^25.0.8",

package/skills/grafema-codebase-analysis/SKILL.md

@@ -10,7 +10,7 @@ license: Apache-2.0
 compatibility: Requires Grafema MCP server configured (grafema or @grafema/mcp package)
 metadata:
   author: Grafema
-  version: "0.2.5"
+  version: "0.3.0"
 ---
 
 # Grafema: Graph-Based Codebase Analysis

package/src/cli.ts

@@ -17,6 +17,11 @@ import { getCommand } from './commands/get.js';
 import { traceCommand } from './commands/trace.js';
 import { impactCommand } from './commands/impact.js';
 import { contextCommand } from './commands/context.js';
+import { describeCommand } from './commands/describe.js';
+import { tldrCommand } from './commands/tldr.js';
+import { wtfCommand } from './commands/wtf.js';
+import { whoCommand } from './commands/who.js';
+import { whyCommand } from './commands/why.js';
 
 import { statsCommand } from './commands/stats.js';
 import { checkCommand } from './commands/check.js';
@@ -27,6 +32,7 @@ import { schemaCommand } from './commands/schema.js';
 import { explainCommand } from './commands/explain.js';
 import { fileCommand } from './commands/file.js';
 import { setupSkillCommand } from './commands/setup-skill.js';
+import { gitIngestCommand } from './commands/git-ingest.js';
 
 // Read version from package.json
 const __dirname = dirname(fileURLToPath(import.meta.url));
@@ -39,12 +45,19 @@ program
   .description('Grafema code analysis CLI')
   .version(pkg.version);
 
+// Human-first commands
+program.addCommand(tldrCommand);
+program.addCommand(wtfCommand);
+program.addCommand(whoCommand);
+program.addCommand(whyCommand);
+
 // Commands in logical order
 program.addCommand(initCommand);
 program.addCommand(analyzeCommand);
 program.addCommand(overviewCommand);
 program.addCommand(queryCommand);
 program.addCommand(contextCommand);
+program.addCommand(describeCommand);
 program.addCommand(typesCommand);
 program.addCommand(lsCommand);
 program.addCommand(getCommand);
@@ -60,5 +73,6 @@ program.addCommand(schemaCommand);
 program.addCommand(explainCommand);
 program.addCommand(fileCommand);
 program.addCommand(setupSkillCommand);
+program.addCommand(gitIngestCommand);
 
 program.parse();

package/src/commands/analyze.ts

@@ -20,7 +20,7 @@ export const analyzeCommand = new Command('analyze')
   .option('--log-level <level>', 'Set log level (silent, errors, warnings, info, debug)')
   .option('--log-file <path>', 'Write all log output to a file')
   .option('--strict', 'Enable strict mode (fail on unresolved references)')
-  .option('--auto-start', 'Auto-start RFDB server if not running')
+  .option('--no-auto-start', 'Do not auto-start RFDB server (require manual start)')
   .addHelpText('after', `
 Examples:
   grafema analyze                Analyze current project
@@ -31,8 +31,6 @@ Examples:
   grafema analyze --debug        Write diagnostics.log for debugging
   grafema analyze --log-file out.log  Write all logs to a file
   grafema analyze --strict       Fail on unresolved references (debugging)
-  grafema analyze --auto-start   Auto-start server (useful for CI)
-
-Note: Start the server first with: grafema server start
+  grafema analyze --no-auto-start  Require manual server start
 `)
   .action(analyzeAction);