@grafema/cli 0.2.11 → 0.3.0-beta

package/dist/utils/progressRenderer.js.map

@@ -1 +1 @@
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+{"version":3,"file":"progressRenderer.js","sourceRoot":"","sources":["../../src/utils/progressRenderer.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;GAeG;AA8BH;;;;;;GAMG;AACH,MAAM,OAAO,gBAAgB;IACnB,MAAM,GAAa,CAAC,WAAW,EAAE,UAAU,EAAE,UAAU,EAAE,YAAY,EAAE,YAAY,CAAC,CAAC;IACrF,iBAAiB,GAAW,CAAC,CAAC,CAAC;IAC/B,YAAY,GAAW,EAAE,CAAC;IAC1B,aAAa,GAAW,EAAE,CAAC;IAC3B,OAAO,GAAW,EAAE,CAAC;IACrB,UAAU,GAAW,CAAC,CAAC;IACvB,cAAc,GAAW,CAAC,CAAC;IAC3B,gBAAgB,GAAW,CAAC,CAAC;IAC7B,aAAa,GAAW,CAAC,CAAC;IAC1B,cAAc,GAAW,EAAE,CAAC;IAC5B,YAAY,GAAW,CAAC,CAAC;IACzB,aAAa,CAAU;IACvB,SAAS,CAAS;IAClB,eAAe,GAAW,CAAC,CAAC;IAC5B,eAAe,CAAS;IACxB,KAAK,CAAyB;IAC9B,aAAa,GAAG,CAAC,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,CAAC,CAAC;IACnE,aAAa,GAAa,EAAE,CAAC;IAC7B,SAAS,GAAW,CAAC,CAAC;IACtB,SAAS,GAAW,CAAC,CAAC;IAE9B,YAAY,OAAiC;QAC3C,IAAI,CAAC,aAAa,GAAG,OAAO,EAAE,aAAa,IAAI,OAAO,CAAC,MAAM,CAAC,KAAK,IAAI,KAAK,CAAC;QAC7E,IAAI,CAAC,eAAe,GAAG,OAAO,EAAE,QAAQ,IAAI,GAAG,CAAC;QAChD,IAAI,CAAC,SAAS,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;QAC5B,IAAI,CAAC,KAAK,GAAG,OAAO,EAAE,KAAK,IAAI,CAAC,CAAC,IAAY,EAAE,EAAE,CAAC,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC;IAChF,CAAC;IAED;;;OAGG;IACH,MAAM,CAAC,IAAkB;QACvB,wBAAwB;QACxB,IAAI,IAAI,CAAC,KAAK,IAAI,IAAI,CAAC,KAAK,KAAK,IAAI,CAAC,YAAY,EAAE,CAAC;YACnD,IAAI,CAAC,YAAY,GAAG,IAAI,CAAC,KAAK,CAAC;YAC/B,MAAM,GAAG,GAAG,IAAI,CAAC,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;YAC5C,IAAI,GAAG,KAAK,CAAC,CAAC,EAAE,CAAC;gBACf,IAAI,CAAC,iBAAiB,GAAG,GAAG,CAAC;YAC/B,CAAC;YACD,6BAA6B;YAC7B,IAAI,CAAC,aAAa,GAAG,EAAE,CAAC;YACxB,IAAI,CAAC,cAAc,GAAG,EAAE,CAAC;YACzB,IAAI,CAAC,gBAAgB,GAAG,CAAC,CAAC;YAC1B,IAAI,CAAC,aAAa,GAAG,CAAC,CAAC;YACvB,IAAI,CAAC,cAAc,GAAG,CAAC,CAAC;YACxB,IAAI,CAAC,UAAU,GAAG,CAAC,CAAC;QACtB,CAAC;QAED,kCAAkC;QAClC,IAAI,IAAI,CAAC,aAAa,KAAK,SAAS,EAAE,CAAC;YACrC,IAAI,CAAC,aAAa,GAAG,IAAI,CAAC,aAAa,CAAC;YACxC,yDAAyD;YACzD,IAAI,CAAC,IAAI,CAAC,YAAY,KAAK,YAAY,IAAI,IAAI,CAAC,YAAY,KAAK,YAAY,CAAC;gBAC1E,IAAI,CAAC,aAAa,IAAI,CAAC,IAAI,CAAC,aAAa,CAAC,QAAQ,CAAC,IAAI,CAAC,aAAa,CAAC,EAAE,CAAC;gBAC3E,IAAI,CAAC,aAAa,CAAC,IAAI,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC;YAC9C,CAAC;QACH,CAAC;QACD,IAAI,IAAI,CAAC,OAAO,KAAK,SAAS,EAAE,CAAC;YAC/B,IAAI,CAAC,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC;QAC9B,CAAC;QACD,IAAI,IAAI,CAAC,UAAU,KAAK,SAAS,EAAE,CAAC;YAClC,IAAI,CAAC,UAAU,GAAG,IAAI,CAAC,UAAU,CAAC;QACpC,CAAC;QACD,IAAI,IAAI,CAAC,cAAc,KAAK,SAAS,EAAE,CAAC;YACtC,IAAI,CAAC,cAAc,GAAG,IAAI,CAAC,cAAc,CAAC;QAC5C,CAAC;QACD,IAAI,IAAI,CAAC,gBAAgB,KAAK,SAAS,EAAE,CAAC;YACxC,IAAI,CAAC,gBAAgB,GAAG,IAAI,CAAC,gBAAgB,CAAC;QAChD,CAAC;QACD,IAAI,IAAI,CAAC,aAAa,KAAK,SAAS,EAAE,CAAC;YACrC,IAAI,CAAC,aAAa,GAAG,IAAI,CAAC,aAAa,CAAC;QAC1C,CAAC;QACD,IAAI,IAAI,CAAC,cAAc,KAAK,SAAS,EAAE,CAAC;YACtC,IAAI,CAAC,cAAc,GAAG,IAAI,CAAC,cAAc,CAAC;QAC5C,CAAC;QAED,iBAAiB;QACjB,IAAI,CAAC,YAAY,GAAG,CAAC,IAAI,CAAC,YAAY,GAAG,CAAC,CAAC,GAAG,IAAI,CAAC,aAAa,CAAC,MAAM,CAAC;QAExE,mBAAmB;QACnB,MAAM,GAAG,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;QACvB,IAAI,GAAG,GAAG,IAAI,CAAC,eAAe,GAAG,IAAI,CAAC,eAAe,EAAE,CAAC;YACtD,OAAO;QACT,CAAC;QACD,IAAI,CAAC,eAAe,GAAG,GAAG,CAAC;QAE3B,IAAI,CAAC,OAAO,EAAE,CAAC;IACjB,CAAC;IAED;;;OAGG;IACH,QAAQ,CAAC,SAAiB,EAAE,SAAiB;QAC3C,IAAI,CAAC,SAAS,GAAG,SAAS,CAAC;QAC3B,IAAI,CAAC,SAAS,GAAG,SAAS,CAAC;IAC7B,CAAC;IAED;;OAEG;IACK,OAAO;QACb,MAAM,MAAM,GAAG,IAAI,CAAC,YAAY,EAAE,CAAC;QAEnC,IAAI,IAAI,CAAC,aAAa,EAAE,CAAC;YACvB,0EAA0E;YAC1E,MAAM,MAAM,GAAG,MAAM,CAAC,MAAM,CAAC,EAAE,EAAE,GAAG,CAAC,CAAC;YACtC,IAAI,CAAC,KAAK,CAAC,KAAK,MAAM,EAAE,CAAC,CAAC;QAC5B,CAAC;aAAM,CAAC;YACN,+BAA+B;YAC/B,IAAI,CAAC,KAAK,CAAC,GAAG,MAAM,IAAI,CAAC,CAAC;QAC5B,CAAC;IACH,CAAC;IAEO,YAAY;QAClB,IAAI,IAAI,CAAC,aAAa,EAAE,CAAC;YACvB,OAAO,IAAI,CAAC,iBAAiB,EAAE,CAAC;QAClC,CAAC;aAAM,CAAC;YACN,OAAO,IAAI,CAAC,oBAAoB,EAAE,CAAC;QACrC,CAAC;IACH,CAAC;IAED;;OAEG;IACK,aAAa;QACnB,MAAM,OAAO,GAAG,CAAC,IAAI,CAAC,GAAG,EAAE,GAAG,IAAI,CAAC,SAAS,CAAC,GAAG,IAAI,CAAC;QACrD,IAAI,OAAO,GAAG,EAAE,EAAE,CAAC;YACjB,OAAO,GAAG,OAAO,CAAC,OAAO,CAAC,CAAC,CAAC,GAAG,CAAC;QAClC,CAAC;QACD,MAAM,OAAO,GAAG,IAAI,CAAC,KAAK,CAAC,OAAO,GAAG,EAAE,CAAC,CAAC;QACzC,MAAM,OAAO,GAAG,IAAI,CAAC,KAAK,CAAC,OAAO,GAAG,EAAE,CAAC,CAAC;QACzC,OAAO,GAAG,OAAO,IAAI,OAAO,GAAG,CAAC;IAClC,CAAC;IAEO,iBAAiB;QACvB,MAAM,OAAO,GAAG,IAAI,CAAC,aAAa,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC;QACtD,MAAM,OAAO,GAAG,IAAI,CAAC,aAAa,EAAE,CAAC;QACrC,MAAM,UAAU,GAAG,IAAI,CAAC,aAAa,EAAE,CAAC;QACxC,MAAM,QAAQ,GAAG,IAAI,CAAC,mBAAmB,EAAE,CAAC;QAC5C,MAAM,KAAK,GAAG,IAAI,CAAC,WAAW,EAAE,CAAC;QAEjC,oEAAoE;QACpE,OAAO,GAAG,OAAO,IAAI,UAAU,GAAG,QAAQ,MAAM,OAAO,GAAG,KAAK,EAAE,CAAC;IACpE,CAAC;IAEO,oBAAoB;QAC1B,MAAM,OAAO,GAAG,IAAI,CAAC,aAAa,EAAE,CAAC;QACrC,OAAO,IAAI,IAAI,CAAC,YAAY,KAAK,IAAI,CAAC,OAAO,IAAI,IAAI,CAAC,mBAAmB,EAAE,KAAK,OAAO,GAAG,CAAC;IAC7F,CAAC;IAED;;OAEG;IACK,WAAW;QACjB,IAAI,IAAI,CAAC,SAAS,KAAK,CAAC,IAAI,IAAI,CAAC,SAAS,KAAK,CAAC,EAAE,CAAC;YACjD,OAAO,EAAE,CAAC;QACZ,CAAC;QACD,MAAM,KAAK,GAAG,IAAI,CAAC,YAAY,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC;QAChD,MAAM,KAAK,GAAG,IAAI,CAAC,YAAY,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC;QAChD,OAAO,MAAM,KAAK,WAAW,KAAK,QAAQ,CAAC;IAC7C,CAAC;IAED;;OAEG;IACK,YAAY,CAAC,CAAS;QAC5B,IAAI,CAAC,IAAI,SAAS,EAAE,CAAC;YAC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package/dist/utils/queryHints.d.ts

@@ -0,0 +1,6 @@
+export declare function extractQueriedTypes(query: string): {
+    nodeTypes: string[];
+    edgeTypes: string[];
+};
+export declare function findSimilarTypes(queriedType: string, availableTypes: string[], maxDistance?: number): string[];
+//# sourceMappingURL=queryHints.d.ts.map

package/dist/utils/queryHints.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"queryHints.d.ts","sourceRoot":"","sources":["../../src/utils/queryHints.ts"],"names":[],"mappings":"AASA,wBAAgB,mBAAmB,CAAC,KAAK,EAAE,MAAM,GAAG;IAAE,SAAS,EAAE,MAAM,EAAE,CAAC;IAAC,SAAS,EAAE,MAAM,EAAE,CAAA;CAAE,CAkB/F;AAED,wBAAgB,gBAAgB,CAC9B,WAAW,EAAE,MAAM,EACnB,cAAc,EAAE,MAAM,EAAE,EACxB,WAAW,GAAE,MAAU,GACtB,MAAM,EAAE,CAYV"}

package/dist/utils/queryHints.js

@@ -0,0 +1,36 @@
+/**
+ * Query hint utilities for the CLI raw query path.
+ *
+ * Note: extractQueriedTypes() is intentionally duplicated from packages/mcp/src/utils.ts.
+ * The CLI cannot import @grafema/mcp (dependency direction). If the Datalog syntax changes,
+ * both copies must be updated.
+ */
+import { levenshtein } from '@grafema/util';
+export function extractQueriedTypes(query) {
+    const nodeTypes = [];
+    const edgeTypes = [];
+    // Match node(VAR, "TYPE") — only working node predicate.
+    // type(VAR, "TYPE") is excluded: Rust evaluator has no "type" branch.
+    const nodeRegex = /\bnode\([^,)]+,\s*"([^"]+)"\)/g;
+    let m;
+    while ((m = nodeRegex.exec(query)) !== null) {
+        nodeTypes.push(m[1]);
+    }
+    const edgeRegex = /\b(?:edge|incoming)\([^,)]+,\s*[^,)]+,\s*"([^"]+)"\)/g;
+    while ((m = edgeRegex.exec(query)) !== null) {
+        edgeTypes.push(m[1]);
+    }
+    return { nodeTypes, edgeTypes };
+}
+export function findSimilarTypes(queriedType, availableTypes, maxDistance = 2) {
+    const queriedLower = queriedType.toLowerCase();
+    const similar = [];
+    for (const type of availableTypes) {
+        const dist = levenshtein(queriedLower, type.toLowerCase());
+        if (dist <= maxDistance && (dist > 0 || queriedType !== type)) {
+            similar.push(type);
+        }
+    }
+    return similar;
+}
+//# sourceMappingURL=queryHints.js.map

package/dist/utils/queryHints.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"queryHints.js","sourceRoot":"","sources":["../../src/utils/queryHints.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AACH,OAAO,EAAE,WAAW,EAAE,MAAM,eAAe,CAAC;AAE5C,MAAM,UAAU,mBAAmB,CAAC,KAAa;IAC/C,MAAM,SAAS,GAAa,EAAE,CAAC;IAC/B,MAAM,SAAS,GAAa,EAAE,CAAC;IAE/B,yDAAyD;IACzD,sEAAsE;IACtE,MAAM,SAAS,GAAG,gCAAgC,CAAC;IACnD,IAAI,CAAyB,CAAC;IAC9B,OAAO,CAAC,CAAC,GAAG,SAAS,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,KAAK,IAAI,EAAE,CAAC;QAC5C,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IACvB,CAAC;IAED,MAAM,SAAS,GAAG,uDAAuD,CAAC;IAC1E,OAAO,CAAC,CAAC,GAAG,SAAS,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,KAAK,IAAI,EAAE,CAAC;QAC5C,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IACvB,CAAC;IAED,OAAO,EAAE,SAAS,EAAE,SAAS,EAAE,CAAC;AAClC,CAAC;AAED,MAAM,UAAU,gBAAgB,CAC9B,WAAmB,EACnB,cAAwB,EACxB,cAAsB,CAAC;IAEvB,MAAM,YAAY,GAAG,WAAW,CAAC,WAAW,EAAE,CAAC;IAC/C,MAAM,OAAO,GAAa,EAAE,CAAC;IAE7B,KAAK,MAAM,IAAI,IAAI,cAAc,EAAE,CAAC;QAClC,MAAM,IAAI,GAAG,WAAW,CAAC,YAAY,EAAE,IAAI,CAAC,WAAW,EAAE,CAAC,CAAC;QAC3D,IAAI,IAAI,IAAI,WAAW,IAAI,CAAC,IAAI,GAAG,CAAC,IAAI,WAAW,KAAK,IAAI,CAAC,EAAE,CAAC;YAC9D,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QACrB,CAAC;IACH,CAAC;IAED,OAAO,OAAO,CAAC;AACjB,CAAC"}

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@grafema/cli",
-  "version": "0.2.11",
+  "version": "0.3.0-beta",
   "description": "CLI for Grafema code analysis toolkit",
   "type": "module",
   "main": "./dist/cli.js",
@@ -35,9 +35,9 @@
   "dependencies": {
     "commander": "^13.0.0",
     "yaml": "^2.8.2",
-    "@grafema/api": "0.2.11",
-    "@grafema/core": "0.2.11",
-    "@grafema/types": "0.2.11"
+    "@grafema/api": "0.3.0-beta",
+    "@grafema/types": "0.3.0-beta",
+    "@grafema/util": "0.3.0-beta"
   },
   "devDependencies": {
     "@types/node": "^25.0.8",

package/skills/grafema-codebase-analysis/SKILL.md

@@ -10,7 +10,7 @@ license: Apache-2.0
 compatibility: Requires Grafema MCP server configured (grafema or @grafema/mcp package)
 metadata:
   author: Grafema
-  version: "0.2.5"
+  version: "0.3.0"
 ---
 
 # Grafema: Graph-Based Codebase Analysis

package/src/cli.ts

@@ -17,6 +17,11 @@ import { getCommand } from './commands/get.js';
 import { traceCommand } from './commands/trace.js';
 import { impactCommand } from './commands/impact.js';
 import { contextCommand } from './commands/context.js';
+import { describeCommand } from './commands/describe.js';
+import { tldrCommand } from './commands/tldr.js';
+import { wtfCommand } from './commands/wtf.js';
+import { whoCommand } from './commands/who.js';
+import { whyCommand } from './commands/why.js';
 
 import { statsCommand } from './commands/stats.js';
 import { checkCommand } from './commands/check.js';
@@ -27,6 +32,7 @@ import { schemaCommand } from './commands/schema.js';
 import { explainCommand } from './commands/explain.js';
 import { fileCommand } from './commands/file.js';
 import { setupSkillCommand } from './commands/setup-skill.js';
+import { gitIngestCommand } from './commands/git-ingest.js';
 
 // Read version from package.json
 const __dirname = dirname(fileURLToPath(import.meta.url));
@@ -39,12 +45,19 @@ program
   .description('Grafema code analysis CLI')
   .version(pkg.version);
 
+// Human-first commands
+program.addCommand(tldrCommand);
+program.addCommand(wtfCommand);
+program.addCommand(whoCommand);
+program.addCommand(whyCommand);
+
 // Commands in logical order
 program.addCommand(initCommand);
 program.addCommand(analyzeCommand);
 program.addCommand(overviewCommand);
 program.addCommand(queryCommand);
 program.addCommand(contextCommand);
+program.addCommand(describeCommand);
 program.addCommand(typesCommand);
 program.addCommand(lsCommand);
 program.addCommand(getCommand);
@@ -60,5 +73,6 @@ program.addCommand(schemaCommand);
 program.addCommand(explainCommand);
 program.addCommand(fileCommand);
 program.addCommand(setupSkillCommand);
+program.addCommand(gitIngestCommand);
 
 program.parse();

package/src/commands/analyze.ts

@@ -20,7 +20,7 @@ export const analyzeCommand = new Command('analyze')
   .option('--log-level <level>', 'Set log level (silent, errors, warnings, info, debug)')
   .option('--log-file <path>', 'Write all log output to a file')
   .option('--strict', 'Enable strict mode (fail on unresolved references)')
-  .option('--auto-start', 'Auto-start RFDB server if not running')
+  .option('--no-auto-start', 'Do not auto-start RFDB server (require manual start)')
   .addHelpText('after', `
 Examples:
   grafema analyze                Analyze current project
@@ -31,8 +31,6 @@ Examples:
   grafema analyze --debug        Write diagnostics.log for debugging
   grafema analyze --log-file out.log  Write all logs to a file
   grafema analyze --strict       Fail on unresolved references (debugging)
-  grafema analyze --auto-start   Auto-start server (useful for CI)
-
-Note: Start the server first with: grafema server start
+  grafema analyze --no-auto-start  Require manual server start
 `)
   .action(analyzeAction);

package/src/commands/analyzeAction.ts

@@ -1,24 +1,24 @@
 /**
- * Analyze command action — connects to RFDB, loads plugins, runs Orchestrator.
+ * Analyze command action — spawns grafema-orchestrator for project analysis.
  *
- * Extracted from analyze.ts (REG-435) to keep command definition separate
- * from execution logic.
+ * The Rust grafema-orchestrator binary handles the full analysis pipeline:
+ * discovery, parsing (OXC), analysis (grafema-analyzer), resolution,
+ * and RFDB ingestion. This action finds the binary, spawns it with
+ * the correct args, streams output, and prints a summary.
  */
 
 import { resolve, join } from 'path';
 import { existsSync, mkdirSync } from 'fs';
+import { spawn } from 'child_process';
 import {
-  Orchestrator,
   RFDBServerBackend,
-  DiagnosticReporter,
-  DiagnosticWriter,
   createLogger,
-  loadConfig,
-  StrictModeFailure,
-} from '@grafema/core';
-import type { LogLevel, GraphBackend } from '@grafema/types';
-import { ProgressRenderer } from '../utils/progressRenderer.js';
-import { loadCustomPlugins, createPlugins } from '../plugins/pluginLoader.js';
+  findOrchestratorBinary,
+  getBinaryNotFoundMessage,
+  findAnalyzerBinary,
+  ensureBinary,
+} from '@grafema/util';
+import type { LogLevel } from '@grafema/util';
 
 export interface NodeEdgeCountBackend {
   nodeCount: () => Promise<number>;
@@ -53,6 +53,28 @@ function getLogLevel(options: { quiet?: boolean; verbose?: boolean; logLevel?: s
   return 'silent';  // Default: silent logs, clean progress UI
 }
 
+/**
+ * Find the grafema.config.yaml config file for the orchestrator.
+ *
+ * Search order:
+ * 1. <projectPath>/grafema.config.yaml
+ * 2. <projectPath>/.grafema/config.yaml (legacy location)
+ */
+function findConfigFile(projectPath: string): string | null {
+  const candidates = [
+    join(projectPath, 'grafema.config.yaml'),
+    join(projectPath, '.grafema', 'config.yaml'),
+  ];
+
+  for (const candidate of candidates) {
+    if (existsSync(candidate)) {
+      return candidate;
+    }
+  }
+
+  return null;
+}
+
 export async function analyzeAction(path: string, options: { service?: string; entrypoint?: string; clear?: boolean; quiet?: boolean; verbose?: boolean; debug?: boolean; logLevel?: string; logFile?: string; strict?: boolean; autoStart?: boolean }): Promise<void> {
   const projectPath = resolve(path);
   const grafemaDir = join(projectPath, '.grafema');
@@ -71,35 +93,74 @@ export async function analyzeAction(path: string, options: { service?: string; e
   // Create logger based on CLI flags
   const logLevel = getLogLevel(options);
   const logFile = options.logFile ? resolve(options.logFile) : undefined;
-  const logger = createLogger(logLevel, logFile ? { logFile } : undefined);
+  const _logger = createLogger(logLevel, logFile ? { logFile } : undefined);
 
   if (logFile) {
     debug(`Log file: ${logFile}`);
   }
   debug(`Analyzing project: ${projectPath}`);
 
-  // Connect to RFDB server
-  // Default: require explicit `grafema server start`
-  // Use --auto-start for CI or backwards compatibility
-  // In normal mode (not verbose), suppress backend logs for clean progress UI
+  // Find grafema-orchestrator binary
+  const orchestratorBinary = findOrchestratorBinary();
+  if (!orchestratorBinary) {
+    console.error('');
+    console.error(getBinaryNotFoundMessage('grafema-orchestrator'));
+    process.exit(1);
+  }
+
+  debug(`Using orchestrator: ${orchestratorBinary}`);
+
+  // Ensure JS/TS analyzer binaries exist (lazy download if missing)
+  for (const binName of ['grafema-analyzer', 'grafema-resolve']) {
+    const existing = findAnalyzerBinary(binName);
+    if (!existing) {
+      const downloaded = await ensureBinary(binName, null, info);
+      if (downloaded) {
+        debug(`Downloaded ${binName} → ${downloaded}`);
+      }
+    }
+  }
+
+  // Find config file for the orchestrator
+  const configPath = findConfigFile(projectPath);
+  if (!configPath) {
+    console.error('');
+    console.error('No grafema config file found.');
+    console.error('');
+    console.error('Expected one of:');
+    console.error(`  ${join(projectPath, 'grafema.config.yaml')}`);
+    console.error(`  ${join(projectPath, '.grafema', 'config.yaml')}`);
+    console.error('');
+    console.error('Create a config file with at least:');
+    console.error('  root: "."');
+    console.error('  include:');
+    console.error('    - "src/**/*.js"');
+    console.error('');
+    process.exit(1);
+  }
+
+  debug(`Using config: ${configPath}`);
+
+  // Connect to RFDB server — auto-start by default (zero-config UX)
   const backend = new RFDBServerBackend({
     dbPath,
-    autoStart: options.autoStart ?? false,
-    silent: !options.verbose  // Silent in normal mode (show progress), verbose shows logs
+    autoStart: options.autoStart ?? true,
+    silent: !options.verbose,
+    clientName: 'cli'
   });
 
   try {
     await backend.connect();
   } catch (err) {
-    if (!options.autoStart && err instanceof Error && err.message.includes('not running')) {
+    if (err instanceof Error && err.message.includes('not running')) {
       console.error('');
-      console.error('RFDB server is not running.');
+      console.error('RFDB server failed to start.');
       console.error('');
-      console.error('Start the server first:');
+      console.error('Try starting manually:');
       console.error('  grafema server start');
       console.error('');
-      console.error('Or use --auto-start flag:');
-      console.error('  grafema analyze --auto-start');
+      console.error('Or run diagnostics:');
+      console.error('  grafema doctor');
       console.error('');
       process.exit(1);
     }
@@ -111,174 +172,67 @@ export async function analyzeAction(path: string, options: { service?: string; e
     await backend.clear();
   }
 
-  const config = loadConfig(projectPath, logger);
-
-  // Extract services from config (REG-174)
-  if (config.services.length > 0) {
-    debug(`Loaded ${config.services.length} service(s) from config`);
-    for (const svc of config.services) {
-      const entry = svc.entryPoint ? ` (entry: ${svc.entryPoint})` : '';
-      debug(`  - ${svc.name}: ${svc.path}${entry}`);
-    }
-  }
-
-  // Load custom plugins from .grafema/plugins/
-  const customPlugins = await loadCustomPlugins(projectPath, debug);
-  const plugins = createPlugins(config.plugins, customPlugins, options.verbose);
-
-  debug(`Loaded ${plugins.length} plugins`);
-
-  // Resolve strict mode: CLI flag overrides config
-  const strictMode = options.strict ?? config.strict ?? false;
-  if (strictMode) {
-    debug('Strict mode enabled - analysis will fail on unresolved references');
-  }
-
   const startTime = Date.now();
 
-  // Create progress renderer for CLI output
-  // In quiet mode, use a no-op renderer (skip rendering)
-  // In verbose mode, use non-interactive (newlines per update)
-  // In normal mode, use interactive (spinner with line overwrite)
-  const renderer = options.quiet
-    ? null
-    : new ProgressRenderer({
-        isInteractive: !options.verbose && process.stdout.isTTY,
-      });
+  // Build orchestrator args
+  const args: string[] = ['analyze', '--config', configPath, '--socket', backend.socketPath];
 
-  // Poll graph stats periodically to show node/edge counts in progress
-  let statsInterval: NodeJS.Timeout | null = null;
-  if (renderer && !options.quiet) {
-    statsInterval = setInterval(async () => {
-      try {
-        const stats = await fetchNodeEdgeCounts(backend);
-        renderer.setStats(stats.nodeCount, stats.edgeCount);
-      } catch {
-        // Ignore stats errors during analysis
-      }
-    }, 500); // Poll every 500ms
-    statsInterval.unref?.();
+  if (options.clear) {
+    args.push('--force');
   }
 
-  const orchestrator = new Orchestrator({
-    graph: backend as unknown as GraphBackend,
-    plugins,
-    serviceFilter: options.service || null,
-    entrypoint: options.entrypoint,
-    forceAnalysis: options.clear || false,
-    logger,
-    services: config.services.length > 0 ? config.services : undefined,  // Pass config services (REG-174)
-    strictMode, // REG-330: Pass strict mode flag
-    onProgress: (progress) => {
-      renderer?.update(progress);
-    },
-  });
+  debug(`Spawning: ${orchestratorBinary} ${args.join(' ')}`);
 
   let exitCode = 0;
 
   try {
-    await orchestrator.run(projectPath);
-    await backend.flush();
+    // Spawn grafema-orchestrator
+    exitCode = await new Promise<number>((resolvePromise, reject) => {
+      const child = spawn(orchestratorBinary, args, {
+        stdio: [
+          'ignore',
+          options.quiet ? 'ignore' : 'inherit',
+          options.quiet ? 'ignore' : 'inherit',
+        ],
+        env: {
+          ...process.env,
+          // Pass RUST_LOG for tracing verbosity
+          RUST_LOG: options.verbose ? 'info' : (options.debug ? 'debug' : 'warn'),
+        },
+      });
 
-    const elapsedSeconds = (Date.now() - startTime) / 1000;
-    const stats = await fetchNodeEdgeCounts(backend);
+      child.on('error', (err) => {
+        reject(new Error(`Failed to spawn grafema-orchestrator: ${err.message}`));
+      });
 
-    // Clear progress line in interactive mode, then show results
-    if (renderer && process.stdout.isTTY) {
-      process.stdout.write('\r\x1b[K'); // Clear line
-    }
-    info('');
-    info(renderer ? renderer.finish(elapsedSeconds) : `Analysis complete in ${elapsedSeconds.toFixed(2)}s`);
-    info(`  Nodes: ${stats.nodeCount}`);
-    info(`  Edges: ${stats.edgeCount}`);
+      child.on('close', (code) => {
+        resolvePromise(code ?? 1);
+      });
+    });
 
-    // Get diagnostics and report summary
-    const diagnostics = orchestrator.getDiagnostics();
-    const reporter = new DiagnosticReporter(diagnostics);
+    if (exitCode === 0) {
+      const elapsedSeconds = (Date.now() - startTime) / 1000;
+      const stats = await fetchNodeEdgeCounts(backend);
 
-    // Print summary if there are any issues
-    if (diagnostics.count() > 0) {
       info('');
-      info(reporter.categorizedSummary());
-
-      // In verbose mode, print full report
-      if (options.verbose) {
-        debug('');
-        debug(reporter.report({ format: 'text', includeSummary: false }));
-      }
-    }
-
-    // Always write diagnostics.log (required for `grafema check` command)
-    const writer = new DiagnosticWriter();
-    await writer.write(diagnostics, grafemaDir);
-    if (options.debug) {
-      debug(`Diagnostics written to ${writer.getLogPath(grafemaDir)}`);
-    }
-
-    // Determine exit code based on severity
-    if (diagnostics.hasFatal()) {
-      exitCode = 1;
-    } else if (diagnostics.hasErrors()) {
-      exitCode = 2; // Completed with errors
+      info(`Analysis complete in ${elapsedSeconds.toFixed(2)}s`);
+      info(`  Nodes: ${stats.nodeCount}`);
+      info(`  Edges: ${stats.edgeCount}`);
     } else {
-      exitCode = 0; // Success (maybe warnings)
-    }
-  } catch (e) {
-    const diagnostics = orchestrator.getDiagnostics();
-    const reporter = new DiagnosticReporter(diagnostics);
-
-    // Clear progress line in interactive mode
-    if (renderer && process.stdout.isTTY) {
-      process.stdout.write('\r\x1b[K');
-    }
-
-    // Check if this is a strict mode failure (REG-332: structured output)
-    if (e instanceof StrictModeFailure) {
-      // Format ONLY from diagnostics, not from error.message
-      console.error('');
-      console.error(`✗ Strict mode: ${e.count} unresolved reference(s) found during ENRICHMENT.`);
       console.error('');
-      console.error(reporter.formatStrict(e.diagnostics, {
-        verbose: options.verbose,
-        suppressedCount: e.suppressedCount,  // REG-332
-      }));
-      console.error('');
-      console.error('Run without --strict for graceful degradation, or fix the underlying issues.');
-    } else {
-      // Generic error handling (non-strict)
-      const error = e instanceof Error ? e : new Error(String(e));
-      console.error('');
-      console.error(`✗ Analysis failed: ${error.message}`);
-      console.error('');
-      console.error('→ Run with --debug for detailed diagnostics');
-
-      if (diagnostics.count() > 0) {
-        console.error('');
-        console.error(reporter.report({ format: 'text', includeSummary: true }));
-      }
-    }
-
-    // Write diagnostics.log in debug mode even on failure
-    if (options.debug) {
-      const writer = new DiagnosticWriter();
-      await writer.write(diagnostics, grafemaDir);
-      console.error(`Diagnostics written to ${writer.getLogPath(grafemaDir)}`);
+      console.error(`Analysis failed with exit code ${exitCode}`);
     }
-
+  } catch (e) {
+    const error = e instanceof Error ? e : new Error(String(e));
+    console.error('');
+    console.error(`Analysis failed: ${error.message}`);
     exitCode = 1;
   } finally {
-    // Stop stats polling
-    if (statsInterval) {
-      clearInterval(statsInterval);
-      statsInterval = null;
-    }
-
     if (backend.connected) {
       await backend.close();
     }
 
     // Exit with appropriate code
-    // 0 = success, 1 = fatal, 2 = errors
     exitWithCode(exitCode);
   }
 }

package/src/commands/check.ts

@@ -15,8 +15,8 @@ import {
   GraphFreshnessChecker,
   IncrementalReanalyzer,
   DIAGNOSTIC_CATEGORIES,
-} from '@grafema/core';
-import type { GuaranteeGraph, DiagnosticCategoryKey } from '@grafema/core';
+} from '@grafema/util';
+import type { GuaranteeGraph, DiagnosticCategoryKey } from '@grafema/util';
 import { exitWithError } from '../utils/errorFormatter.js';
 
 
@@ -31,7 +31,7 @@ const BUILT_IN_VALIDATORS: Record<string, { name: string; description: string; c
   // }
 };
 
-// Re-export for backward compatibility (deprecated - import from @grafema/core instead)
+// Re-export for backward compatibility (deprecated - import from @grafema/util instead)
 export { DIAGNOSTIC_CATEGORIES as CHECK_CATEGORIES };
 
 export const checkCommand = new Command('check')
@@ -132,7 +132,7 @@ Examples:
         exitWithError('No graph database found', ['Run: grafema analyze']);
       }
 
-      const backend = new RFDBServerBackend({ dbPath });
+      const backend = new RFDBServerBackend({ dbPath, clientName: 'cli' });
       await backend.connect();
 
       // Check graph freshness
@@ -287,7 +287,7 @@ async function runBuiltInValidator(
     exitWithError('No graph database found', ['Run: grafema analyze']);
   }
 
-  const backend = new RFDBServerBackend({ dbPath });
+  const backend = new RFDBServerBackend({ dbPath, clientName: 'cli' });
   await backend.connect();
 
   // Check graph freshness

package/src/commands/context.ts

@@ -21,8 +21,8 @@ import {
   getNodeDisplayName,
   formatEdgeMetadata,
   STRUCTURAL_EDGE_TYPES,
-} from '@grafema/core';
-import type { NodeContext, EdgeGroup } from '@grafema/core';
+} from '@grafema/util';
+import type { NodeContext, EdgeGroup } from '@grafema/util';
 import type { BaseNodeRecord } from '@grafema/types';
 import { getCodePreview, formatCodePreview } from '../utils/codePreview.js';
 import { formatLocation } from '../utils/formatNode.js';
@@ -79,7 +79,7 @@ Examples:
       exitWithError('No graph database found', ['Run: grafema analyze']);
     }
 
-    const backend = new RFDBServerBackend({ dbPath });
+    const backend = new RFDBServerBackend({ dbPath, clientName: 'cli' });
     await backend.connect();
 
     const spinner = new Spinner('Loading context...');

package/src/commands/coverage.ts

@@ -10,7 +10,7 @@
 import { Command } from 'commander';
 import { resolve, join } from 'path';
 import { existsSync } from 'fs';
-import { RFDBServerBackend, CoverageAnalyzer, type CoverageResult } from '@grafema/core';
+import { RFDBServerBackend, CoverageAnalyzer, type CoverageResult } from '@grafema/util';
 import { exitWithError } from '../utils/errorFormatter.js';
 
 export const coverageCommand = new Command('coverage')
@@ -34,7 +34,7 @@ Examples:
       exitWithError('No graph database found', ['Run: grafema analyze']);
     }
 
-    const backend = new RFDBServerBackend({ dbPath });
+    const backend = new RFDBServerBackend({ dbPath, clientName: 'cli' });
     await backend.connect();
 
     try {