@goondocks/myco 0.9.0 → 0.11.0

package/dist/chunk-D6DXYAFK.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/db/queries/resolution-events.ts"],"sourcesContent":["/**\n * Resolution event CRUD query helpers.\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport { getDatabase } from '@myco/db/client.js';\nimport { DEFAULT_MACHINE_ID } from '@myco/constants.js';\nimport { syncRow } from '@myco/db/queries/team-outbox.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Default number of events returned by listResolutionEvents when no limit given. */\nconst DEFAULT_LIST_LIMIT = 100;\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Fields required (or optional) when inserting a resolution event. */\nexport interface ResolutionEventInsert {\n  id: string;\n  agent_id: string;\n  spore_id: string;\n  action: string;\n  created_at: number;\n  new_spore_id?: string | null;\n  reason?: string | null;\n  session_id?: string | null;\n  machine_id?: string;\n}\n\n/** Row shape returned from resolution_events queries (all columns). */\nexport interface ResolutionEventRow {\n  id: string;\n  agent_id: string;\n  spore_id: string;\n  action: string;\n  new_spore_id: string | null;\n  reason: string | null;\n  session_id: string | null;\n  created_at: number;\n  machine_id: string;\n  synced_at: number | null;\n}\n\n/** Filter options for `listResolutionEvents`. */\nexport interface ListResolutionEventsOptions {\n  agent_id?: string;\n  spore_id?: string;\n  limit?: number;\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst EVENT_COLUMNS = [\n  'id',\n  'agent_id',\n  'spore_id',\n  'action',\n  'new_spore_id',\n  'reason',\n  'session_id',\n  'created_at',\n  'machine_id',\n  'synced_at',\n] as const;\n\nconst SELECT_COLUMNS = EVENT_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Normalize a SQLite result row into a typed ResolutionEventRow. */\nfunction toResolutionEventRow(row: Record<string, unknown>): ResolutionEventRow {\n  return {\n    id: row.id as string,\n    agent_id: row.agent_id as string,\n    spore_id: row.spore_id as string,\n    action: row.action as string,\n    new_spore_id: (row.new_spore_id as string) ?? null,\n    reason: (row.reason as string) ?? null,\n    session_id: (row.session_id as string) ?? null,\n    created_at: row.created_at as number,\n    machine_id: (row.machine_id as string) ?? DEFAULT_MACHINE_ID,\n    synced_at: (row.synced_at as number) ?? null,\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Insert a new resolution event.\n */\nexport function insertResolutionEvent(\n  data: ResolutionEventInsert,\n): ResolutionEventRow {\n  const db = getDatabase();\n\n  db.prepare(\n    `INSERT INTO resolution_events (\n       id, agent_id, spore_id, action, new_spore_id, reason, session_id, created_at, machine_id\n     ) VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)`,\n  ).run(\n    data.id,\n    data.agent_id,\n    data.spore_id,\n    data.action,\n    data.new_spore_id ?? null,\n    data.reason ?? null,\n    data.session_id ?? null,\n    data.created_at,\n    data.machine_id ?? DEFAULT_MACHINE_ID,\n  );\n\n  const row = toResolutionEventRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM resolution_events WHERE id = ?`).get(data.id) as Record<string, unknown>,\n  );\n\n  syncRow('resolution_events', row);\n\n  return row;\n}\n\n/**\n * List resolution events with optional filters, ordered by created_at DESC.\n */\nexport function listResolutionEvents(\n  options: ListResolutionEventsOptions = {},\n): ResolutionEventRow[] {\n  const db = getDatabase();\n\n  const conditions: string[] = [];\n  const params: unknown[] = [];\n\n  if (options.agent_id !== undefined) {\n    conditions.push(`agent_id = ?`);\n    params.push(options.agent_id);\n  }\n\n  if (options.spore_id !== undefined) {\n    conditions.push(`spore_id = ?`);\n    params.push(options.spore_id);\n  }\n\n  const where = conditions.length > 0 ? `WHERE ${conditions.join(' AND ')}` : '';\n  const limit = options.limit ?? DEFAULT_LIST_LIMIT;\n\n  params.push(limit);\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM resolution_events\n     ${where}\n     ORDER BY created_at DESC\n     LIMIT ?`,\n  ).all(...params) as Record<string, unknown>[];\n\n  return rows.map(toResolutionEventRow);\n}\n"],"mappings":";;;;;;;;;;;;AAgBA,IAAM,qBAAqB;AA4C3B,IAAM,gBAAgB;AAAA,EACpB;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AACF;AAEA,IAAM,iBAAiB,cAAc,KAAK,IAAI;AAO9C,SAAS,qBAAqB,KAAkD;AAC9E,SAAO;AAAA,IACL,IAAI,IAAI;AAAA,IACR,UAAU,IAAI;AAAA,IACd,UAAU,IAAI;AAAA,IACd,QAAQ,IAAI;AAAA,IACZ,cAAe,IAAI,gBAA2B;AAAA,IAC9C,QAAS,IAAI,UAAqB;AAAA,IAClC,YAAa,IAAI,cAAyB;AAAA,IAC1C,YAAY,IAAI;AAAA,IAChB,YAAa,IAAI,cAAyB;AAAA,IAC1C,WAAY,IAAI,aAAwB;AAAA,EAC1C;AACF;AASO,SAAS,sBACd,MACoB;AACpB,QAAM,KAAK,YAAY;AAEvB,KAAG;AAAA,IACD;AAAA;AAAA;AAAA,EAGF,EAAE;AAAA,IACA,KAAK;AAAA,IACL,KAAK;AAAA,IACL,KAAK;AAAA,IACL,KAAK;AAAA,IACL,KAAK,gBAAgB;AAAA,IACrB,KAAK,UAAU;AAAA,IACf,KAAK,cAAc;AAAA,IACnB,KAAK;AAAA,IACL,KAAK,cAAc;AAAA,EACrB;AAEA,QAAM,MAAM;AAAA,IACV,GAAG,QAAQ,UAAU,cAAc,sCAAsC,EAAE,IAAI,KAAK,EAAE;AAAA,EACxF;AAEA,UAAQ,qBAAqB,GAAG;AAEhC,SAAO;AACT;AAKO,SAAS,qBACd,UAAuC,CAAC,GAClB;AACtB,QAAM,KAAK,YAAY;AAEvB,QAAM,aAAuB,CAAC;AAC9B,QAAM,SAAoB,CAAC;AAE3B,MAAI,QAAQ,aAAa,QAAW;AAClC,eAAW,KAAK,cAAc;AAC9B,WAAO,KAAK,QAAQ,QAAQ;AAAA,EAC9B;AAEA,MAAI,QAAQ,aAAa,QAAW;AAClC,eAAW,KAAK,cAAc;AAC9B,WAAO,KAAK,QAAQ,QAAQ;AAAA,EAC9B;AAEA,QAAM,QAAQ,WAAW,SAAS,IAAI,SAAS,WAAW,KAAK,OAAO,CAAC,KAAK;AAC5E,QAAM,QAAQ,QAAQ,SAAS;AAE/B,SAAO,KAAK,KAAK;AAEjB,QAAM,OAAO,GAAG;AAAA,IACd,UAAU,cAAc;AAAA;AAAA,OAErB,KAAK;AAAA;AAAA;AAAA,EAGV,EAAE,IAAI,GAAG,MAAM;AAEf,SAAO,KAAK,IAAI,oBAAoB;AACtC;","names":[]}

package/dist/chunk-ENWBFX7F.js

@@ -0,0 +1,50 @@
+import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
+
+// src/daemon/machine-id.ts
+import { execFileSync } from "child_process";
+import crypto from "crypto";
+import fs from "fs";
+import os from "os";
+import path from "path";
+var MACHINE_HASH_LENGTH = 8;
+var MACHINE_ID_FILE = "machine_id";
+var FALLBACK_GITHUB_USER = "local";
+function computeMachineHash() {
+  const raw = `${os.hostname()}${os.homedir()}`;
+  const hash = crypto.createHash("sha256").update(raw).digest("hex");
+  return hash.slice(0, MACHINE_HASH_LENGTH);
+}
+function resolveGitHubUser() {
+  try {
+    const output = execFileSync("gh", ["api", "user", "--jq", ".login"], {
+      encoding: "utf-8",
+      timeout: 5e3,
+      stdio: ["pipe", "pipe", "pipe"]
+    });
+    const login = output.trim();
+    return login.length > 0 ? login : FALLBACK_GITHUB_USER;
+  } catch {
+    return FALLBACK_GITHUB_USER;
+  }
+}
+function getMachineId(vaultDir) {
+  const cachePath = path.join(vaultDir, MACHINE_ID_FILE);
+  try {
+    const cached = fs.readFileSync(cachePath, "utf-8").trim();
+    if (cached.length > 0) return cached;
+  } catch {
+  }
+  const githubUser = resolveGitHubUser();
+  const machineHash = computeMachineHash();
+  const machineId = `${githubUser}_${machineHash}`;
+  fs.mkdirSync(vaultDir, { recursive: true });
+  fs.writeFileSync(cachePath, machineId, "utf-8");
+  return machineId;
+}
+
+export {
+  computeMachineHash,
+  resolveGitHubUser,
+  getMachineId
+};
+//# sourceMappingURL=chunk-ENWBFX7F.js.map

package/dist/chunk-ENWBFX7F.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/daemon/machine-id.ts"],"sourcesContent":["/**\n * Machine identity generation — deterministic `{github_user}_{machine_hash}` format.\n *\n * The machine ID uniquely identifies a (user, machine) pair for backup dedup\n * and team sync. It is computed once, cached to `{vaultDir}/machine_id`,\n * and reused on subsequent calls.\n *\n * Format: `{github_user}_{machine_hash}` where machine_hash is a truncated\n * SHA-256 of `os.hostname() + os.homedir()`.\n */\n\nimport { execFileSync } from 'node:child_process';\nimport crypto from 'node:crypto';\nimport fs from 'node:fs';\nimport os from 'node:os';\nimport path from 'node:path';\n\n/** Length of the truncated machine hash suffix. */\nconst MACHINE_HASH_LENGTH = 8;\n\n/** Filename for the cached machine ID within the vault. */\nconst MACHINE_ID_FILE = 'machine_id';\n\n/** Fallback GitHub username when `gh` CLI is unavailable. */\nconst FALLBACK_GITHUB_USER = 'local';\n\n/**\n * Compute a deterministic machine hash from hostname + homedir.\n *\n * Returns the first MACHINE_HASH_LENGTH hex chars of the SHA-256 digest.\n */\nexport function computeMachineHash(): string {\n  const raw = `${os.hostname()}${os.homedir()}`;\n  const hash = crypto.createHash('sha256').update(raw).digest('hex');\n  return hash.slice(0, MACHINE_HASH_LENGTH);\n}\n\n/**\n * Resolve the current GitHub username via the `gh` CLI.\n *\n * Returns FALLBACK_GITHUB_USER if `gh` is not installed or not authenticated.\n */\nexport function resolveGitHubUser(): string {\n  try {\n    const output = execFileSync('gh', ['api', 'user', '--jq', '.login'], {\n      encoding: 'utf-8',\n      timeout: 5000,\n      stdio: ['pipe', 'pipe', 'pipe'],\n    });\n    const login = output.trim();\n    return login.length > 0 ? login : FALLBACK_GITHUB_USER;\n  } catch {\n    return FALLBACK_GITHUB_USER;\n  }\n}\n\n/**\n * Get or generate the machine ID for this vault.\n *\n * On first call, computes `{github_user}_{machine_hash}` and caches it\n * to `{vaultDir}/machine_id`. Subsequent calls read from cache.\n *\n * @param vaultDir — vault root directory (e.g., `~/.myco/vaults/myco/`)\n * @returns the machine ID string\n */\nexport function getMachineId(vaultDir: string): string {\n  const cachePath = path.join(vaultDir, MACHINE_ID_FILE);\n\n  // Read from cache if present\n  try {\n    const cached = fs.readFileSync(cachePath, 'utf-8').trim();\n    if (cached.length > 0) return cached;\n  } catch {\n    // File doesn't exist yet — fall through to generate\n  }\n\n  const githubUser = resolveGitHubUser();\n  const machineHash = computeMachineHash();\n  const machineId = `${githubUser}_${machineHash}`;\n\n  // Cache for future calls\n  fs.mkdirSync(vaultDir, { recursive: true });\n  fs.writeFileSync(cachePath, machineId, 'utf-8');\n\n  return machineId;\n}\n"],"mappings":";;;AAWA,SAAS,oBAAoB;AAC7B,OAAO,YAAY;AACnB,OAAO,QAAQ;AACf,OAAO,QAAQ;AACf,OAAO,UAAU;AAGjB,IAAM,sBAAsB;AAG5B,IAAM,kBAAkB;AAGxB,IAAM,uBAAuB;AAOtB,SAAS,qBAA6B;AAC3C,QAAM,MAAM,GAAG,GAAG,SAAS,CAAC,GAAG,GAAG,QAAQ,CAAC;AAC3C,QAAM,OAAO,OAAO,WAAW,QAAQ,EAAE,OAAO,GAAG,EAAE,OAAO,KAAK;AACjE,SAAO,KAAK,MAAM,GAAG,mBAAmB;AAC1C;AAOO,SAAS,oBAA4B;AAC1C,MAAI;AACF,UAAM,SAAS,aAAa,MAAM,CAAC,OAAO,QAAQ,QAAQ,QAAQ,GAAG;AAAA,MACnE,UAAU;AAAA,MACV,SAAS;AAAA,MACT,OAAO,CAAC,QAAQ,QAAQ,MAAM;AAAA,IAChC,CAAC;AACD,UAAM,QAAQ,OAAO,KAAK;AAC1B,WAAO,MAAM,SAAS,IAAI,QAAQ;AAAA,EACpC,QAAQ;AACN,WAAO;AAAA,EACT;AACF;AAWO,SAAS,aAAa,UAA0B;AACrD,QAAM,YAAY,KAAK,KAAK,UAAU,eAAe;AAGrD,MAAI;AACF,UAAM,SAAS,GAAG,aAAa,WAAW,OAAO,EAAE,KAAK;AACxD,QAAI,OAAO,SAAS,EAAG,QAAO;AAAA,EAChC,QAAQ;AAAA,EAER;AAEA,QAAM,aAAa,kBAAkB;AACrC,QAAM,cAAc,mBAAmB;AACvC,QAAM,YAAY,GAAG,UAAU,IAAI,WAAW;AAG9C,KAAG,UAAU,UAAU,EAAE,WAAW,KAAK,CAAC;AAC1C,KAAG,cAAc,WAAW,WAAW,OAAO;AAE9C,SAAO;AACT;","names":[]}

package/dist/{chunk-OXZSXYAT.js → chunk-FFQES5MC.js}

@@ -1,8 +1,12 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
+import {
+  syncRow
+} from "./chunk-XLY3REL3.js";
 import {
   getDatabase
 } from "./chunk-MYX5NCRH.js";
 import {
+  DEFAULT_MACHINE_ID,
   DIGEST_TIERS,
   EDGE_TYPE_DERIVED_FROM,
   EDGE_TYPE_EXTRACTED_FROM,
@@ -10,7 +14,7 @@ import {
   EDGE_TYPE_HAS_BATCH,
   GRAPH_EDGE_DEFAULT_CONFIDENCE,
   QUERY_DEFAULT_LIST_LIMIT
-} from "./chunk-5VZ52A4T.js";
+} from "./chunk-76ZO5RGT.js";
 
 // src/db/queries/batches.ts
 var DEFAULT_UNPROCESSED_LIMIT = 100;
@@ -34,7 +38,9 @@ var BATCH_COLUMNS = [
   "activity_count",
   "processed",
   "content_hash",
-  "created_at"
+  "created_at",
+  "machine_id",
+  "synced_at"
 ];
 var SELECT_COLUMNS = BATCH_COLUMNS.join(", ");
 function toBatchRow(row) {
@@ -51,7 +57,9 @@ function toBatchRow(row) {
     activity_count: row.activity_count,
     processed: row.processed,
     content_hash: row.content_hash ?? null,
-    created_at: row.created_at
+    created_at: row.created_at,
+    machine_id: row.machine_id ?? DEFAULT_MACHINE_ID,
+    synced_at: row.synced_at ?? null
   };
 }
 function populateBatchResponses(sessionId, responses) {
@@ -129,13 +137,13 @@ function insertBatchStateless(data) {
     `INSERT INTO prompt_batches (
        session_id, prompt_number, user_prompt, response_summary,
        classification, started_at, ended_at, status,
-       activity_count, processed, content_hash, created_at
+       activity_count, processed, content_hash, created_at, machine_id
      ) VALUES (
        ?,
        (SELECT COALESCE(MAX(prompt_number), 0) + 1 FROM prompt_batches WHERE session_id = ?),
        ?, NULL,
        NULL, ?, NULL, ?,
-       ?, ?, NULL, ?
+       ?, ?, NULL, ?, ?
      )`
   ).run(
     data.session_id,
@@ -145,7 +153,8 @@ function insertBatchStateless(data) {
     data.status ?? DEFAULT_STATUS,
     DEFAULT_ACTIVITY_COUNT,
     DEFAULT_PROCESSED,
-    data.created_at
+    data.created_at,
+    DEFAULT_MACHINE_ID
   );
   const batchId = Number(info.lastInsertRowid);
   const userPrompt = data.user_prompt ?? null;
@@ -508,7 +517,9 @@ var GRAPH_EDGE_COLUMNS = [
   "session_id",
   "confidence",
   "properties",
-  "created_at"
+  "created_at",
+  "machine_id",
+  "synced_at"
 ];
 var SELECT_COLUMNS5 = GRAPH_EDGE_COLUMNS.join(", ");
 function toGraphEdgeRow(row) {
@@ -523,7 +534,9 @@ function toGraphEdgeRow(row) {
     session_id: row.session_id ?? null,
     confidence: row.confidence,
     properties: row.properties ?? null,
-    created_at: row.created_at
+    created_at: row.created_at,
+    machine_id: row.machine_id ?? DEFAULT_MACHINE_ID,
+    synced_at: row.synced_at ?? null
   };
 }
 function insertGraphEdge(data) {
@@ -532,8 +545,8 @@ function insertGraphEdge(data) {
   db.prepare(
     `INSERT INTO graph_edges (
        id, agent_id, source_id, source_type, target_id, target_type,
-       type, session_id, confidence, properties, created_at
-     ) VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)`
+       type, session_id, confidence, properties, created_at, machine_id
+     ) VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)`
   ).run(
     id,
     data.agent_id,
@@ -545,11 +558,14 @@ function insertGraphEdge(data) {
     data.session_id ?? null,
     data.confidence ?? GRAPH_EDGE_DEFAULT_CONFIDENCE,
     data.properties ?? null,
-    data.created_at
+    data.created_at,
+    data.machine_id ?? DEFAULT_MACHINE_ID
   );
-  return toGraphEdgeRow(
+  const row = toGraphEdgeRow(
     db.prepare(`SELECT ${SELECT_COLUMNS5} FROM graph_edges WHERE id = ?`).get(id)
   );
+  syncRow("graph_edges", row);
+  return row;
 }
 function listGraphEdges(options = {}) {
   const db = getDatabase();
@@ -688,7 +704,9 @@ var ENTITY_COLUMNS = [
   "properties",
   "first_seen",
   "last_seen",
-  "status"
+  "status",
+  "machine_id",
+  "synced_at"
 ];
 var SELECT_COLUMNS6 = ENTITY_COLUMNS.join(", ");
 function toEntityRow(row) {
@@ -700,14 +718,16 @@ function toEntityRow(row) {
     properties: row.properties ?? null,
     first_seen: row.first_seen,
     last_seen: row.last_seen,
-    status: row.status ?? "active"
+    status: row.status ?? "active",
+    machine_id: row.machine_id ?? DEFAULT_MACHINE_ID,
+    synced_at: row.synced_at ?? null
   };
 }
 function insertEntity(data) {
   const db = getDatabase();
   db.prepare(
-    `INSERT INTO entities (id, agent_id, type, name, properties, first_seen, last_seen)
-     VALUES (?, ?, ?, ?, ?, ?, ?)
+    `INSERT INTO entities (id, agent_id, type, name, properties, first_seen, last_seen, machine_id)
+     VALUES (?, ?, ?, ?, ?, ?, ?, ?)
      ON CONFLICT (agent_id, type, name) DO UPDATE SET
        properties = COALESCE(EXCLUDED.properties, entities.properties),
        last_seen = EXCLUDED.last_seen`
@@ -718,15 +738,18 @@ function insertEntity(data) {
     data.name,
     data.properties ?? null,
     data.first_seen,
-    data.last_seen
+    data.last_seen,
+    data.machine_id ?? DEFAULT_MACHINE_ID
   );
-  return toEntityRow(
+  const row = toEntityRow(
     db.prepare(`SELECT ${SELECT_COLUMNS6} FROM entities WHERE agent_id = ? AND type = ? AND name = ?`).get(
       data.agent_id,
       data.type,
       data.name
     )
   );
+  syncRow("entities", row);
+  return row;
 }
 function getEntity(id) {
   const db = getDatabase();
@@ -789,7 +812,9 @@ var EXTRACT_COLUMNS = [
   "tier",
   "content",
   "substrate_hash",
-  "generated_at"
+  "generated_at",
+  "machine_id",
+  "synced_at"
 ];
 var SELECT_COLUMNS7 = EXTRACT_COLUMNS.join(", ");
 function toDigestExtractRow(row) {
@@ -799,7 +824,9 @@ function toDigestExtractRow(row) {
     tier: row.tier,
     content: row.content,
     substrate_hash: row.substrate_hash ?? null,
-    generated_at: row.generated_at
+    generated_at: row.generated_at,
+    machine_id: row.machine_id ?? DEFAULT_MACHINE_ID,
+    synced_at: row.synced_at ?? null
   };
 }
 function upsertDigestExtract(data) {
@@ -874,4 +901,4 @@ export {
   createSporeLineage,
   createBatchLineage
 };
-//# sourceMappingURL=chunk-OXZSXYAT.js.map
+//# sourceMappingURL=chunk-FFQES5MC.js.map

package/dist/chunk-FFQES5MC.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/db/queries/batches.ts","../src/utils/error-message.ts","../src/db/queries/turns.ts","../src/db/queries/runs.ts","../src/db/queries/reports.ts","../src/db/queries/graph-edges.ts","../src/db/queries/lineage.ts","../src/db/queries/entities.ts","../src/db/queries/digest-extracts.ts"],"sourcesContent":["/**\n * Prompt batch CRUD query helpers.\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport { getDatabase } from '@myco/db/client.js';\nimport { DEFAULT_MACHINE_ID } from '@myco/constants.js';\nimport { syncRow } from '@myco/db/queries/team-outbox.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Default number of unprocessed batches returned when no limit given. */\nconst DEFAULT_UNPROCESSED_LIMIT = 100;\n\n/** Default number of batches returned by listBatchesBySession when no limit given. */\nexport const BATCHES_DEFAULT_LIMIT = 200;\n\n/** Batch status value when a batch is closed normally. */\nconst STATUS_COMPLETED = 'completed';\n\n/** Default batch status for new batches. */\nconst DEFAULT_STATUS = 'active';\n\n/** Default activity count for new batches. */\nconst DEFAULT_ACTIVITY_COUNT = 0;\n\n/** Default processed flag for new batches. */\nconst DEFAULT_PROCESSED = 0;\n\n/** Processed flag value indicating a batch has been processed. */\nconst PROCESSED_FLAG = 1;\n\n/** Number of characters used for prompt prefix matching. */\nconst PROMPT_PREFIX_MATCH_CHARS = 60;\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Filter options for `listBatchesBySession`. */\nexport interface ListBatchesBySessionOptions {\n  limit?: number;\n  offset?: number;\n}\n\n/** Fields required (or optional) when inserting a prompt batch. */\nexport interface BatchInsert {\n  session_id: string;\n  created_at: number;\n  prompt_number?: number | null;\n  user_prompt?: string | null;\n  response_summary?: string | null;\n  classification?: string | null;\n  started_at?: number | null;\n  ended_at?: number | null;\n  status?: string;\n  activity_count?: number;\n  processed?: number;\n  content_hash?: string | null;\n  machine_id?: string;\n}\n\n/** Row shape returned from batch queries. */\nexport interface BatchRow {\n  id: number;\n  session_id: string;\n  prompt_number: number | null;\n  user_prompt: string | null;\n  response_summary: string | null;\n  classification: string | null;\n  started_at: number | null;\n  ended_at: number | null;\n  status: string;\n  activity_count: number;\n  processed: number;\n  content_hash: string | null;\n  created_at: number;\n  machine_id: string;\n  synced_at: number | null;\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst BATCH_COLUMNS = [\n  'id',\n  'session_id',\n  'prompt_number',\n  'user_prompt',\n  'response_summary',\n  'classification',\n  'started_at',\n  'ended_at',\n  'status',\n  'activity_count',\n  'processed',\n  'content_hash',\n  'created_at',\n  'machine_id',\n  'synced_at',\n] as const;\n\nconst SELECT_COLUMNS = BATCH_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Normalize a SQLite result row into a typed BatchRow. */\nfunction toBatchRow(row: Record<string, unknown>): BatchRow {\n  return {\n    id: row.id as number,\n    session_id: row.session_id as string,\n    prompt_number: (row.prompt_number as number) ?? null,\n    user_prompt: (row.user_prompt as string) ?? null,\n    response_summary: (row.response_summary as string) ?? null,\n    classification: (row.classification as string) ?? null,\n    started_at: (row.started_at as number) ?? null,\n    ended_at: (row.ended_at as number) ?? null,\n    status: row.status as string,\n    activity_count: row.activity_count as number,\n    processed: row.processed as number,\n    content_hash: (row.content_hash as string) ?? null,\n    created_at: row.created_at as number,\n    machine_id: (row.machine_id as string) ?? DEFAULT_MACHINE_ID,\n    synced_at: (row.synced_at as number) ?? null,\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Insert a new prompt batch.\n *\n * The `id` is auto-generated by the INTEGER PRIMARY KEY (AUTOINCREMENT).\n * FTS5 index is kept in sync via a follow-up INSERT into prompt_batches_fts.\n */\nexport function insertBatch(data: BatchInsert): BatchRow {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `INSERT INTO prompt_batches (\n       session_id, prompt_number, user_prompt, response_summary,\n       classification, started_at, ended_at, status,\n       activity_count, processed, content_hash, created_at, machine_id\n     ) VALUES (\n       ?, ?, ?, ?,\n       ?, ?, ?, ?,\n       ?, ?, ?, ?, ?\n     )`,\n  ).run(\n    data.session_id,\n    data.prompt_number ?? null,\n    data.user_prompt ?? null,\n    data.response_summary ?? null,\n    data.classification ?? null,\n    data.started_at ?? null,\n    data.ended_at ?? null,\n    data.status ?? DEFAULT_STATUS,\n    data.activity_count ?? DEFAULT_ACTIVITY_COUNT,\n    data.processed ?? DEFAULT_PROCESSED,\n    data.content_hash ?? null,\n    data.created_at,\n    data.machine_id ?? DEFAULT_MACHINE_ID,\n  );\n\n  const batchId = Number(info.lastInsertRowid);\n\n  // FTS5 sync\n  const userPrompt = data.user_prompt ?? null;\n  if (userPrompt) {\n    db.prepare('INSERT INTO prompt_batches_fts(rowid, user_prompt) VALUES (?, ?)').run(batchId, userPrompt);\n  }\n\n  const row = toBatchRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM prompt_batches WHERE id = ?`).get(batchId) as Record<string, unknown>,\n  );\n\n  syncRow('prompt_batches', row);\n\n  return row;\n}\n\n/**\n * Close a batch — set status to 'completed' and record the end time.\n *\n * @returns the updated row, or null if the batch does not exist.\n */\nexport function closeBatch(\n  id: number,\n  endedAt: number,\n): BatchRow | null {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `UPDATE prompt_batches\n     SET status = ?, ended_at = ?\n     WHERE id = ?`,\n  ).run(STATUS_COMPLETED, endedAt, id);\n\n  if (info.changes === 0) return null;\n\n  return toBatchRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM prompt_batches WHERE id = ?`).get(id) as Record<string, unknown>,\n  );\n}\n\n/**\n * Populate response_summary on batches from transcript turns.\n *\n * Matches transcript turns (ordered by position) to batches (ordered by id ASC).\n * This is resilient to prompt_number duplicates caused by daemon restarts.\n * Only updates batches that don't already have a response_summary.\n *\n * @param sessionId — the session to update\n * @param responses — array of { response } ordered by turn position (1-indexed)\n */\nexport function populateBatchResponses(\n  sessionId: string,\n  responses: Array<{ turnIndex: number; response: string }>,\n): void {\n  const db = getDatabase();\n\n  // Get all batches for this session ordered by id (insertion order = true order)\n  const batches = db.prepare(\n    `SELECT id FROM prompt_batches WHERE session_id = ? ORDER BY id ASC`,\n  ).all(sessionId) as Array<{ id: number }>;\n\n  // Map each response to the batch at the same position\n  for (const { turnIndex, response } of responses) {\n    const batchIndex = turnIndex - 1; // turns are 1-indexed\n    if (batchIndex >= 0 && batchIndex < batches.length) {\n      const batchId = batches[batchIndex].id;\n      db.prepare(\n        `UPDATE prompt_batches SET response_summary = ? WHERE id = ? AND response_summary IS NULL`,\n      ).run(response, batchId);\n    }\n  }\n}\n\n/**\n * Get unprocessed batches, ordered by id ASC (insertion order).\n *\n * Supports cursor-based pagination via `after_id` and a `limit` cap.\n */\nexport function getUnprocessedBatches(\n  options: { after_id?: number; limit?: number } = {},\n): BatchRow[] {\n  const db = getDatabase();\n\n  const conditions: string[] = [`processed = ?`];\n  const params: unknown[] = [DEFAULT_PROCESSED];\n\n  if (options.after_id !== undefined) {\n    conditions.push(`id > ?`);\n    params.push(options.after_id);\n  }\n\n  const limit = options.limit ?? DEFAULT_UNPROCESSED_LIMIT;\n  params.push(limit);\n\n  const where = conditions.join(' AND ');\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM prompt_batches\n     WHERE ${where}\n     ORDER BY id ASC\n     LIMIT ?`,\n  ).all(...params) as Record<string, unknown>[];\n\n  return rows.map(toBatchRow);\n}\n\n/**\n * Increment the activity_count for a batch by 1.\n *\n * @returns the updated row, or null if the batch does not exist.\n */\nexport function incrementActivityCount(\n  id: number,\n): BatchRow | null {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `UPDATE prompt_batches\n     SET activity_count = activity_count + 1\n     WHERE id = ?`,\n  ).run(id);\n\n  if (info.changes === 0) return null;\n\n  return toBatchRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM prompt_batches WHERE id = ?`).get(id) as Record<string, unknown>,\n  );\n}\n\n/**\n * Mark a batch as processed (processed = 1).\n *\n * @returns the updated row, or null if the batch does not exist.\n */\nexport function markBatchProcessed(\n  id: number,\n): BatchRow | null {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `UPDATE prompt_batches\n     SET processed = ?\n     WHERE id = ?`,\n  ).run(PROCESSED_FLAG, id);\n\n  if (info.changes === 0) return null;\n\n  return toBatchRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM prompt_batches WHERE id = ?`).get(id) as Record<string, unknown>,\n  );\n}\n\n/**\n * Get a batch's ID by session and prompt number.\n * Used to link attachments to their prompt batch at stop time.\n */\nexport function getBatchIdByPromptNumber(\n  sessionId: string,\n  promptNumber: number,\n): number | null {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT id FROM prompt_batches WHERE session_id = ? AND prompt_number = ? LIMIT 1`,\n  ).get(sessionId, promptNumber) as { id: number } | undefined;\n\n  return row ? row.id : null;\n}\n\n/**\n * Find a batch by matching the start of its user_prompt text.\n * Used for attachment matching after transcript compaction where turn indices no longer\n * align with prompt_numbers.\n */\nexport function findBatchByPromptPrefix(\n  sessionId: string,\n  promptPrefix: string,\n): { id: number; prompt_number: number } | null {\n  const db = getDatabase();\n  // Match first N chars — enough to be unique, tolerant of minor differences\n  const prefix = promptPrefix.slice(0, PROMPT_PREFIX_MATCH_CHARS);\n  const row = db.prepare(\n    `SELECT id, prompt_number FROM prompt_batches\n     WHERE session_id = ? AND user_prompt LIKE ? || '%'\n     LIMIT 1`,\n  ).get(sessionId, prefix) as { id: number; prompt_number: number } | undefined;\n  return row ?? null;\n}\n\n/** Fields required when inserting a batch statelessly (prompt_number derived from DB). */\nexport interface StatelessBatchInsert {\n  session_id: string;\n  created_at: number;\n  user_prompt?: string | null;\n  started_at?: number | null;\n  status?: string;\n}\n\n/**\n * Insert a new prompt batch with prompt_number derived from an inline subquery.\n *\n * The prompt_number is set to `COALESCE(MAX(prompt_number), 0) + 1` for the\n * session, so the caller never needs a separate SELECT. This makes the insert\n * stateless — no in-memory counter required.\n *\n * FTS5 index is kept in sync via a follow-up INSERT into prompt_batches_fts.\n */\nexport function insertBatchStateless(data: StatelessBatchInsert): BatchRow {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `INSERT INTO prompt_batches (\n       session_id, prompt_number, user_prompt, response_summary,\n       classification, started_at, ended_at, status,\n       activity_count, processed, content_hash, created_at, machine_id\n     ) VALUES (\n       ?,\n       (SELECT COALESCE(MAX(prompt_number), 0) + 1 FROM prompt_batches WHERE session_id = ?),\n       ?, NULL,\n       NULL, ?, NULL, ?,\n       ?, ?, NULL, ?, ?\n     )`,\n  ).run(\n    data.session_id,\n    data.session_id,\n    data.user_prompt ?? null,\n    data.started_at ?? null,\n    data.status ?? DEFAULT_STATUS,\n    DEFAULT_ACTIVITY_COUNT,\n    DEFAULT_PROCESSED,\n    data.created_at,\n    DEFAULT_MACHINE_ID,\n  );\n\n  const batchId = Number(info.lastInsertRowid);\n\n  // FTS5 sync\n  const userPrompt = data.user_prompt ?? null;\n  if (userPrompt) {\n    db.prepare('INSERT INTO prompt_batches_fts(rowid, user_prompt) VALUES (?, ?)').run(batchId, userPrompt);\n  }\n\n  return toBatchRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM prompt_batches WHERE id = ?`).get(batchId) as Record<string, unknown>,\n  );\n}\n\n/**\n * Close all open batches for a session — blind UPDATE, no prior SELECT needed.\n *\n * Sets `status = 'completed'` and `ended_at` on every batch that has no\n * `ended_at` value yet. Returns the number of batches closed.\n */\nexport function closeOpenBatches(\n  sessionId: string,\n  endedAt: number,\n): number {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `UPDATE prompt_batches\n     SET status = ?, ended_at = ?\n     WHERE session_id = ? AND ended_at IS NULL`,\n  ).run(STATUS_COMPLETED, endedAt, sessionId);\n\n  return info.changes;\n}\n\n/**\n * Set response_summary on a batch if it doesn't already have one.\n *\n * Idempotent — only updates NULL response_summary.\n */\nexport function setResponseSummary(\n  batchId: number,\n  summary: string,\n): void {\n  const db = getDatabase();\n  db.prepare(\n    `UPDATE prompt_batches SET response_summary = ? WHERE id = ? AND response_summary IS NULL`,\n  ).run(summary, batchId);\n}\n\n/**\n * Get the most recent batch for a session (by id DESC), regardless of status.\n *\n * Used by processStopEvent to attach the AI response and images to the\n * correct batch without positional turn mapping.\n */\nexport function getLatestBatch(\n  sessionId: string,\n): BatchRow | null {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT ${SELECT_COLUMNS} FROM prompt_batches\n     WHERE session_id = ?\n     ORDER BY id DESC LIMIT 1`,\n  ).get(sessionId) as Record<string, unknown> | undefined;\n\n  if (!row) return null;\n  return toBatchRow(row);\n}\n\nexport function listBatchesBySession(\n  sessionId: string,\n  options: ListBatchesBySessionOptions = {},\n): BatchRow[] {\n  const db = getDatabase();\n\n  const limit = options.limit ?? BATCHES_DEFAULT_LIMIT;\n  const offset = options.offset ?? 0;\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM prompt_batches\n     WHERE session_id = ?\n     ORDER BY prompt_number ASC\n     LIMIT ?\n     OFFSET ?`,\n  ).all(sessionId, limit, offset) as Record<string, unknown>[];\n\n  return rows.map(toBatchRow);\n}\n","/**\n * Extract a human-readable error message from an unknown thrown value.\n *\n * Handles Error instances, strings, and arbitrary objects. Never throws.\n */\nexport function errorMessage(err: unknown): string {\n  if (err instanceof Error) return err.message || err.constructor.name || 'Error';\n  if (typeof err === 'string') return err || 'Empty string error';\n  try { return JSON.stringify(err); } catch { return 'Unserializable error'; }\n}\n","/**\n * Agent turn CRUD query helpers.\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport { getDatabase } from '@myco/db/client.js';\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Fields required (or optional) when inserting a turn. */\nexport interface TurnInsert {\n  run_id: string;\n  agent_id: string;\n  turn_number: number;\n  tool_name: string;\n  tool_input?: string | null;\n  tool_output_summary?: string | null;\n  started_at?: number | null;\n  completed_at?: number | null;\n}\n\n/** Row shape returned from agent_turns queries (all columns). */\nexport interface TurnRow {\n  id: number;\n  run_id: string;\n  agent_id: string;\n  turn_number: number;\n  tool_name: string;\n  tool_input: string | null;\n  tool_output_summary: string | null;\n  started_at: number | null;\n  completed_at: number | null;\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst TURN_COLUMNS = [\n  'id',\n  'run_id',\n  'agent_id',\n  'turn_number',\n  'tool_name',\n  'tool_input',\n  'tool_output_summary',\n  'started_at',\n  'completed_at',\n] as const;\n\nconst SELECT_COLUMNS = TURN_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Normalize a SQLite result row into a typed TurnRow. */\nfunction toTurnRow(row: Record<string, unknown>): TurnRow {\n  return {\n    id: row.id as number,\n    run_id: row.run_id as string,\n    agent_id: row.agent_id as string,\n    turn_number: row.turn_number as number,\n    tool_name: row.tool_name as string,\n    tool_input: (row.tool_input as string) ?? null,\n    tool_output_summary: (row.tool_output_summary as string) ?? null,\n    started_at: (row.started_at as number) ?? null,\n    completed_at: (row.completed_at as number) ?? null,\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Insert a new agent turn.\n *\n * The `id` is auto-generated by the INTEGER PRIMARY KEY (AUTOINCREMENT).\n */\nexport function insertTurn(data: TurnInsert): TurnRow {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `INSERT INTO agent_turns (\n       run_id, agent_id, turn_number, tool_name,\n       tool_input, tool_output_summary, started_at, completed_at\n     ) VALUES (\n       ?, ?, ?, ?,\n       ?, ?, ?, ?\n     )`,\n  ).run(\n    data.run_id,\n    data.agent_id,\n    data.turn_number,\n    data.tool_name,\n    data.tool_input ?? null,\n    data.tool_output_summary ?? null,\n    data.started_at ?? null,\n    data.completed_at ?? null,\n  );\n\n  const turnId = Number(info.lastInsertRowid);\n\n  return toTurnRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM agent_turns WHERE id = ?`).get(turnId) as Record<string, unknown>,\n  );\n}\n\n/**\n * List all turns for a specific run, ordered by turn_number ASC.\n */\nexport function listTurns(runId: string): TurnRow[] {\n  const db = getDatabase();\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM agent_turns\n     WHERE run_id = ?\n     ORDER BY turn_number ASC`,\n  ).all(runId) as Record<string, unknown>[];\n\n  return rows.map(toTurnRow);\n}\n\n/**\n * List all agent turns for a run, ordered by turn_number ASC.\n *\n * Alias for `listTurns` with an explicit \"by run\" naming convention used\n * by the dashboard API layer.\n */\nexport function listTurnsByRun(runId: string): TurnRow[] {\n  return listTurns(runId);\n}\n","/**\n * Agent run CRUD query helpers.\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport { getDatabase } from '@myco/db/client.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Default number of runs returned by listRuns when no limit given. */\nconst DEFAULT_LIST_LIMIT = 100;\n\n/** Default run status for new runs. */\nconst DEFAULT_STATUS = 'pending';\n\n/** Run status indicating the run is currently executing. */\nexport const STATUS_RUNNING = 'running';\n\n/** Run status for a successfully completed run. */\nexport const STATUS_COMPLETED = 'completed';\n\n/** Run status for a run that encountered an error. */\nexport const STATUS_FAILED = 'failed';\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Fields required (or optional) when inserting a run. */\nexport interface RunInsert {\n  id: string;\n  agent_id: string;\n  task?: string | null;\n  instruction?: string | null;\n  status?: string;\n  started_at?: number | null;\n  completed_at?: number | null;\n  tokens_used?: number | null;\n  cost_usd?: number | null;\n  actions_taken?: string | null;\n  error?: string | null;\n}\n\n/** Row shape returned from agent_runs queries (all columns). */\nexport interface RunRow {\n  id: string;\n  agent_id: string;\n  task: string | null;\n  instruction: string | null;\n  status: string;\n  started_at: number | null;\n  completed_at: number | null;\n  tokens_used: number | null;\n  cost_usd: number | null;\n  actions_taken: string | null;\n  error: string | null;\n}\n\n/** Completion data passed to updateRunStatus. */\nexport interface RunCompletion {\n  completed_at?: number;\n  tokens_used?: number;\n  cost_usd?: number;\n  actions_taken?: string;\n  error?: string;\n}\n\n/** Filter options for `listRuns`. */\nexport interface ListRunsOptions {\n  limit?: number;\n  offset?: number;\n  agent_id?: string;\n  status?: string;\n  task?: string;\n  search?: string;\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst RUN_COLUMNS = [\n  'id',\n  'agent_id',\n  'task',\n  'instruction',\n  'status',\n  'started_at',\n  'completed_at',\n  'tokens_used',\n  'cost_usd',\n  'actions_taken',\n  'error',\n] as const;\n\nconst SELECT_COLUMNS = RUN_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Normalize a SQLite result row into a typed RunRow. */\nfunction toRunRow(row: Record<string, unknown>): RunRow {\n  return {\n    id: row.id as string,\n    agent_id: row.agent_id as string,\n    task: (row.task as string) ?? null,\n    instruction: (row.instruction as string) ?? null,\n    status: row.status as string,\n    started_at: (row.started_at as number) ?? null,\n    completed_at: (row.completed_at as number) ?? null,\n    tokens_used: (row.tokens_used as number) ?? null,\n    cost_usd: (row.cost_usd as number) ?? null,\n    actions_taken: (row.actions_taken as string) ?? null,\n    error: (row.error as string) ?? null,\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Insert a new agent run.\n */\nexport function insertRun(data: RunInsert): RunRow {\n  const db = getDatabase();\n\n  db.prepare(\n    `INSERT INTO agent_runs (\n       id, agent_id, task, instruction, status,\n       started_at, completed_at, tokens_used, cost_usd,\n       actions_taken, error\n     ) VALUES (\n       ?, ?, ?, ?, ?,\n       ?, ?, ?, ?,\n       ?, ?\n     )`,\n  ).run(\n    data.id,\n    data.agent_id,\n    data.task ?? null,\n    data.instruction ?? null,\n    data.status ?? DEFAULT_STATUS,\n    data.started_at ?? null,\n    data.completed_at ?? null,\n    data.tokens_used ?? null,\n    data.cost_usd ?? null,\n    data.actions_taken ?? null,\n    data.error ?? null,\n  );\n\n  return toRunRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM agent_runs WHERE id = ?`).get(data.id) as Record<string, unknown>,\n  );\n}\n\n/**\n * Retrieve a single run by id.\n *\n * @returns the run row, or null if not found.\n */\nexport function getRun(id: string): RunRow | null {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT ${SELECT_COLUMNS} FROM agent_runs WHERE id = ?`,\n  ).get(id) as Record<string, unknown> | undefined;\n\n  if (!row) return null;\n  return toRunRow(row);\n}\n\n/** Build a WHERE clause and params array from ListRunsOptions filter fields. */\nfunction buildRunsWhere(\n  options: Omit<ListRunsOptions, 'limit' | 'offset'>,\n): { where: string; params: unknown[] } {\n  const conditions: string[] = [];\n  const params: unknown[] = [];\n\n  if (options.agent_id !== undefined) {\n    conditions.push(`agent_id = ?`);\n    params.push(options.agent_id);\n  }\n  if (options.status !== undefined) {\n    conditions.push(`status = ?`);\n    params.push(options.status);\n  }\n  if (options.task !== undefined) {\n    conditions.push(`task = ?`);\n    params.push(options.task);\n  }\n  if (options.search !== undefined && options.search.length > 0) {\n    conditions.push(`task LIKE ?`);\n    params.push(`%${options.search}%`);\n  }\n\n  return {\n    where: conditions.length > 0 ? `WHERE ${conditions.join(' AND ')}` : '',\n    params,\n  };\n}\n\n/**\n * List runs with optional filters, ordered by started_at DESC (nulls last).\n */\nexport function listRuns(\n  options: ListRunsOptions = {},\n): RunRow[] {\n  const db = getDatabase();\n  const { where, params } = buildRunsWhere(options);\n  const limit = options.limit ?? DEFAULT_LIST_LIMIT;\n  const offset = options.offset ?? 0;\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM agent_runs\n     ${where}\n     ORDER BY started_at DESC NULLS LAST\n     LIMIT ?\n     OFFSET ?`,\n  ).all(...params, limit, offset) as Record<string, unknown>[];\n\n  return rows.map(toRunRow);\n}\n\n/**\n * Count runs matching the given filters (no limit/offset).\n */\nexport function countRuns(\n  options: Omit<ListRunsOptions, 'limit' | 'offset'> = {},\n): number {\n  const db = getDatabase();\n  const { where, params } = buildRunsWhere(options);\n\n  const row = db.prepare(\n    `SELECT COUNT(*) as count FROM agent_runs ${where}`,\n  ).get(...params) as { count: number };\n\n  return row.count;\n}\n\n/**\n * Update a run's status, with optional completion data.\n *\n * @returns the updated row, or null if the run does not exist.\n */\nexport function updateRunStatus(\n  id: string,\n  status: string,\n  completion?: RunCompletion,\n): RunRow | null {\n  const db = getDatabase();\n\n  const setClauses: string[] = ['status = ?'];\n  const params: unknown[] = [status];\n\n  if (completion?.completed_at !== undefined) {\n    setClauses.push(`completed_at = ?`);\n    params.push(completion.completed_at);\n  }\n\n  if (completion?.tokens_used !== undefined) {\n    setClauses.push(`tokens_used = ?`);\n    params.push(completion.tokens_used);\n  }\n\n  if (completion?.cost_usd !== undefined) {\n    setClauses.push(`cost_usd = ?`);\n    params.push(completion.cost_usd);\n  }\n\n  if (completion?.actions_taken !== undefined) {\n    setClauses.push(`actions_taken = ?`);\n    params.push(completion.actions_taken);\n  }\n\n  if (completion?.error !== undefined) {\n    setClauses.push(`error = ?`);\n    params.push(completion.error);\n  }\n\n  params.push(id);\n\n  const info = db.prepare(\n    `UPDATE agent_runs\n     SET ${setClauses.join(', ')}\n     WHERE id = ?`,\n  ).run(...params);\n\n  if (info.changes === 0) return null;\n\n  return toRunRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM agent_runs WHERE id = ?`).get(id) as Record<string, unknown>,\n  );\n}\n\n/**\n * Get the currently running run for an agent, if any.\n *\n * @returns the running run row, or null if no run is active.\n */\nexport function getRunningRun(\n  agentId: string,\n): RunRow | null {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM agent_runs\n     WHERE agent_id = ? AND status = ?\n     ORDER BY started_at DESC NULLS LAST\n     LIMIT 1`,\n  ).get(agentId, STATUS_RUNNING) as Record<string, unknown> | undefined;\n\n  if (!row) return null;\n  return toRunRow(row);\n}\n","/**\n * Agent report CRUD query helpers.\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport { getDatabase } from '@myco/db/client.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Default number of reports returned by list queries when no limit given. */\nconst DEFAULT_LIST_LIMIT = 100;\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Fields required (or optional) when inserting a report. */\nexport interface ReportInsert {\n  run_id: string;\n  agent_id: string;\n  action: string;\n  summary: string;\n  details?: string | null;\n  created_at: number;\n}\n\n/** Row shape returned from agent_reports queries (all columns). */\nexport interface ReportRow {\n  id: number;\n  run_id: string;\n  agent_id: string;\n  action: string;\n  summary: string;\n  details: string | null;\n  created_at: number;\n}\n\n/** Filter options for `listReportsByAgent`. */\nexport interface ListReportsByAgentOptions {\n  limit?: number;\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst REPORT_COLUMNS = [\n  'id',\n  'run_id',\n  'agent_id',\n  'action',\n  'summary',\n  'details',\n  'created_at',\n] as const;\n\nconst SELECT_COLUMNS = REPORT_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Normalize a SQLite result row into a typed ReportRow. */\nfunction toReportRow(row: Record<string, unknown>): ReportRow {\n  return {\n    id: row.id as number,\n    run_id: row.run_id as string,\n    agent_id: row.agent_id as string,\n    action: row.action as string,\n    summary: row.summary as string,\n    details: (row.details as string) ?? null,\n    created_at: row.created_at as number,\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Insert a new agent report.\n *\n * The `id` is auto-generated by the INTEGER PRIMARY KEY (AUTOINCREMENT).\n */\nexport function insertReport(data: ReportInsert): ReportRow {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `INSERT INTO agent_reports (\n       run_id, agent_id, action, summary, details, created_at\n     ) VALUES (\n       ?, ?, ?, ?, ?, ?\n     )`,\n  ).run(\n    data.run_id,\n    data.agent_id,\n    data.action,\n    data.summary,\n    data.details ?? null,\n    data.created_at,\n  );\n\n  const reportId = Number(info.lastInsertRowid);\n\n  return toReportRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM agent_reports WHERE id = ?`).get(reportId) as Record<string, unknown>,\n  );\n}\n\n/**\n * List all reports for a specific run, ordered by created_at ASC.\n */\nexport function listReports(runId: string): ReportRow[] {\n  const db = getDatabase();\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM agent_reports\n     WHERE run_id = ?\n     ORDER BY created_at ASC`,\n  ).all(runId) as Record<string, unknown>[];\n\n  return rows.map(toReportRow);\n}\n\n/**\n * List reports by agent, ordered by created_at DESC.\n */\nexport function listReportsByAgent(\n  agentId: string,\n  options: ListReportsByAgentOptions = {},\n): ReportRow[] {\n  const db = getDatabase();\n\n  const limit = options.limit ?? DEFAULT_LIST_LIMIT;\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM agent_reports\n     WHERE agent_id = ?\n     ORDER BY created_at DESC\n     LIMIT ?`,\n  ).all(agentId, limit) as Record<string, unknown>[];\n\n  return rows.map(toReportRow);\n}\n","/**\n * Graph edge CRUD query helpers.\n *\n * Unlike the `edges` table (which has FK constraints to entities), `graph_edges`\n * supports edges between any node types (session, batch, spore, entity).\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport crypto from 'node:crypto';\nimport { getDatabase } from '@myco/db/client.js';\nimport { QUERY_DEFAULT_LIST_LIMIT, GRAPH_EDGE_DEFAULT_CONFIDENCE, DEFAULT_MACHINE_ID } from '@myco/constants.js';\nimport { syncRow } from '@myco/db/queries/team-outbox.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Default BFS traversal depth. */\nconst DEFAULT_BFS_DEPTH = 2;\n\n/** Maximum BFS traversal depth (capped for performance). */\nconst MAX_BFS_DEPTH = 5;\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Valid node types in the graph. */\nexport type GraphNodeType = 'session' | 'batch' | 'spore' | 'entity';\n\n/** Lineage edge types (auto-created by daemon, no LLM). */\nexport type LineageEdgeType = 'FROM_SESSION' | 'EXTRACTED_FROM' | 'DERIVED_FROM' | 'HAS_BATCH';\n\n/** Semantic edge types (created by intelligence agent, LLM-driven). */\nexport type SemanticEdgeType = 'RELATES_TO' | 'SUPERSEDED_BY' | 'REFERENCES' | 'DEPENDS_ON' | 'AFFECTS';\n\n/** All valid graph edge types. */\nexport type GraphEdgeType = LineageEdgeType | SemanticEdgeType;\n\n/** Fields required (or optional) when inserting a graph edge. */\nexport interface GraphEdgeInsert {\n  agent_id: string;\n  source_id: string;\n  source_type: GraphNodeType;\n  target_id: string;\n  target_type: GraphNodeType;\n  type: GraphEdgeType;\n  created_at: number;\n  session_id?: string;\n  confidence?: number;\n  properties?: string;\n  machine_id?: string;\n}\n\n/** Row shape returned from graph edge queries. */\nexport interface GraphEdgeRow {\n  id: string;\n  agent_id: string;\n  source_id: string;\n  source_type: string;\n  target_id: string;\n  target_type: string;\n  type: string;\n  session_id: string | null;\n  confidence: number;\n  properties: string | null;\n  created_at: number;\n  machine_id: string;\n  synced_at: number | null;\n}\n\n/** Filter options for `listGraphEdges`. */\nexport interface ListGraphEdgesOptions {\n  sourceId?: string;\n  targetId?: string;\n  type?: string;\n  agentId?: string;\n  limit?: number;\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst GRAPH_EDGE_COLUMNS = [\n  'id',\n  'agent_id',\n  'source_id',\n  'source_type',\n  'target_id',\n  'target_type',\n  'type',\n  'session_id',\n  'confidence',\n  'properties',\n  'created_at',\n  'machine_id',\n  'synced_at',\n] as const;\n\nconst SELECT_COLUMNS = GRAPH_EDGE_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Normalize a SQLite result row into a typed GraphEdgeRow. */\nfunction toGraphEdgeRow(row: Record<string, unknown>): GraphEdgeRow {\n  return {\n    id: row.id as string,\n    agent_id: row.agent_id as string,\n    source_id: row.source_id as string,\n    source_type: row.source_type as string,\n    target_id: row.target_id as string,\n    target_type: row.target_type as string,\n    type: row.type as string,\n    session_id: (row.session_id as string) ?? null,\n    confidence: row.confidence as number,\n    properties: (row.properties as string) ?? null,\n    created_at: row.created_at as number,\n    machine_id: (row.machine_id as string) ?? DEFAULT_MACHINE_ID,\n    synced_at: (row.synced_at as number) ?? null,\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Insert a new graph edge.\n *\n * Generates a UUID id automatically.\n */\nexport function insertGraphEdge(data: GraphEdgeInsert): GraphEdgeRow {\n  const db = getDatabase();\n  const id = crypto.randomUUID();\n\n  db.prepare(\n    `INSERT INTO graph_edges (\n       id, agent_id, source_id, source_type, target_id, target_type,\n       type, session_id, confidence, properties, created_at, machine_id\n     ) VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)`,\n  ).run(\n    id,\n    data.agent_id,\n    data.source_id,\n    data.source_type,\n    data.target_id,\n    data.target_type,\n    data.type,\n    data.session_id ?? null,\n    data.confidence ?? GRAPH_EDGE_DEFAULT_CONFIDENCE,\n    data.properties ?? null,\n    data.created_at,\n    data.machine_id ?? DEFAULT_MACHINE_ID,\n  );\n\n  const row = toGraphEdgeRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM graph_edges WHERE id = ?`).get(id) as Record<string, unknown>,\n  );\n\n  syncRow('graph_edges', row);\n\n  return row;\n}\n\n/**\n * List graph edges with optional filters, ordered by created_at DESC.\n */\nexport function listGraphEdges(\n  options: ListGraphEdgesOptions = {},\n): GraphEdgeRow[] {\n  const db = getDatabase();\n\n  const conditions: string[] = [];\n  const params: unknown[] = [];\n\n  if (options.sourceId !== undefined) {\n    conditions.push(`source_id = ?`);\n    params.push(options.sourceId);\n  }\n\n  if (options.targetId !== undefined) {\n    conditions.push(`target_id = ?`);\n    params.push(options.targetId);\n  }\n\n  if (options.type !== undefined) {\n    conditions.push(`type = ?`);\n    params.push(options.type);\n  }\n\n  if (options.agentId !== undefined) {\n    conditions.push(`agent_id = ?`);\n    params.push(options.agentId);\n  }\n\n  const where = conditions.length > 0 ? `WHERE ${conditions.join(' AND ')}` : '';\n  const limit = options.limit ?? QUERY_DEFAULT_LIST_LIMIT;\n\n  params.push(limit);\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM graph_edges\n     ${where}\n     ORDER BY created_at DESC\n     LIMIT ?`,\n  ).all(...params) as Record<string, unknown>[];\n\n  return rows.map(toGraphEdgeRow);\n}\n\n/**\n * BFS traversal from a node across graph edges.\n *\n * Returns all edges reachable within `depth` hops from the starting node.\n *\n * @param nodeId   - The starting node ID.\n * @param nodeType - The starting node type.\n * @param options  - Optional depth limit (default 2, max 5).\n */\nexport function getGraphForNode(\n  nodeId: string,\n  nodeType: GraphNodeType,\n  options?: { depth?: number },\n): { edges: GraphEdgeRow[] } {\n  const db = getDatabase();\n  const depth = Math.min(Math.max(options?.depth ?? DEFAULT_BFS_DEPTH, 1), MAX_BFS_DEPTH);\n\n  const seenEdgeIds = new Set<string>();\n  const collectedEdges: GraphEdgeRow[] = [];\n  const visited = new Set<string>([`${nodeType}:${nodeId}`]);\n  let frontier = new Set<string>([nodeId]);\n\n  for (let hop = 0; hop < depth; hop++) {\n    if (frontier.size === 0) break;\n\n    const frontierArray = Array.from(frontier);\n    const placeholders = frontierArray.map(() => `?`).join(', ');\n\n    const rows = db.prepare(\n      `SELECT ${SELECT_COLUMNS}\n       FROM graph_edges\n       WHERE source_id IN (${placeholders}) OR target_id IN (${placeholders})`,\n    ).all(...frontierArray, ...frontierArray) as Record<string, unknown>[];\n\n    const nextFrontier = new Set<string>();\n\n    for (const row of rows) {\n      const edge = toGraphEdgeRow(row);\n      if (!seenEdgeIds.has(edge.id)) {\n        seenEdgeIds.add(edge.id);\n        collectedEdges.push(edge);\n      }\n      const sourceKey = `${edge.source_type}:${edge.source_id}`;\n      const targetKey = `${edge.target_type}:${edge.target_id}`;\n      if (!visited.has(sourceKey)) {\n        visited.add(sourceKey);\n        nextFrontier.add(edge.source_id);\n      }\n      if (!visited.has(targetKey)) {\n        visited.add(targetKey);\n        nextFrontier.add(edge.target_id);\n      }\n    }\n\n    frontier = nextFrontier;\n  }\n\n  return { edges: collectedEdges };\n}\n","/**\n * Lineage edge creation helpers.\n *\n * Creates automatic graph edges when spores and batches are inserted.\n * These are structural (no LLM needed) — the daemon layer calls them.\n *\n * Edge types created:\n * - FROM_SESSION: spore -> session (the session it was extracted from)\n * - EXTRACTED_FROM: spore -> batch (the prompt batch it was extracted from)\n * - DERIVED_FROM: wisdom spore -> source spore (consolidation provenance)\n * - HAS_BATCH: session -> batch (prompt batch belongs to session)\n */\n\nimport { insertGraphEdge } from './graph-edges.js';\nimport {\n  EDGE_TYPE_FROM_SESSION,\n  EDGE_TYPE_EXTRACTED_FROM,\n  EDGE_TYPE_DERIVED_FROM,\n  EDGE_TYPE_HAS_BATCH,\n} from '@myco/constants.js';\n\n// ---------------------------------------------------------------------------\n// Spore lineage\n// ---------------------------------------------------------------------------\n\n/** Create lineage edges for a newly inserted spore. */\nexport function createSporeLineage(spore: {\n  id: string;\n  agent_id: string;\n  session_id?: string | null;\n  prompt_batch_id?: number | null;\n  observation_type?: string;\n  properties?: string | null;\n  created_at: number;\n}): void {\n  if (spore.session_id) {\n    insertGraphEdge({\n      agent_id: spore.agent_id,\n      source_id: spore.id,\n      source_type: 'spore',\n      target_id: spore.session_id,\n      target_type: 'session',\n      type: EDGE_TYPE_FROM_SESSION,\n      created_at: spore.created_at,\n    });\n  }\n\n  if (spore.prompt_batch_id != null) {\n    insertGraphEdge({\n      agent_id: spore.agent_id,\n      source_id: spore.id,\n      source_type: 'spore',\n      target_id: String(spore.prompt_batch_id),\n      target_type: 'batch',\n      type: EDGE_TYPE_EXTRACTED_FROM,\n      created_at: spore.created_at,\n    });\n  }\n\n  // DERIVED_FROM edges for wisdom spores\n  if (spore.observation_type === 'wisdom' && spore.properties) {\n    try {\n      const props = JSON.parse(spore.properties);\n      if (Array.isArray(props.consolidated_from)) {\n        for (const sourceId of props.consolidated_from) {\n          insertGraphEdge({\n            agent_id: spore.agent_id,\n            source_id: spore.id,\n            source_type: 'spore',\n            target_id: sourceId,\n            target_type: 'spore',\n            type: EDGE_TYPE_DERIVED_FROM,\n            created_at: spore.created_at,\n          });\n        }\n      }\n    } catch { /* ignore malformed properties */ }\n  }\n}\n\n// ---------------------------------------------------------------------------\n// Batch lineage\n// ---------------------------------------------------------------------------\n\n/** Create a HAS_BATCH lineage edge from session to batch. */\nexport function createBatchLineage(\n  agentId: string,\n  sessionId: string,\n  batchId: number,\n  createdAt: number,\n): void {\n  insertGraphEdge({\n    agent_id: agentId,\n    source_id: sessionId,\n    source_type: 'session',\n    target_id: String(batchId),\n    target_type: 'batch',\n    type: EDGE_TYPE_HAS_BATCH,\n    created_at: createdAt,\n  });\n}\n","/**\n * Entity CRUD query helpers for the knowledge graph.\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport { getDatabase } from '@myco/db/client.js';\nimport { DEFAULT_MACHINE_ID } from '@myco/constants.js';\nimport { getGraphForNode, type GraphEdgeRow } from '@myco/db/queries/graph-edges.js';\nimport { syncRow } from '@myco/db/queries/team-outbox.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Default number of entities returned by listEntities when no limit given. */\nconst DEFAULT_LIST_LIMIT = 100;\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Fields required (or optional) when inserting an entity. */\nexport interface EntityInsert {\n  id: string;\n  agent_id: string;\n  type: string;\n  name: string;\n  first_seen: number;\n  last_seen: number;\n  properties?: string | null;\n  machine_id?: string;\n}\n\n/** Row shape returned from entity queries (all columns). */\nexport interface EntityRow {\n  id: string;\n  agent_id: string;\n  type: string;\n  name: string;\n  properties: string | null;\n  first_seen: number;\n  last_seen: number;\n  status: string;\n  machine_id: string;\n  synced_at: number | null;\n}\n\n/** Filter options for `listEntities`. */\nexport interface ListEntitiesOptions {\n  agent_id?: string;\n  type?: string;\n  /** Filter by exact entity name. */\n  name?: string;\n  /** Filter by status (default 'active'). */\n  status?: string;\n  /** Filter by entity_mentions subquery — must be paired with note_type. */\n  mentioned_in?: string;\n  /** Required when mentioned_in is provided. */\n  note_type?: string;\n  limit?: number;\n  offset?: number;\n}\n\n/** Return type for `getEntityWithEdges`. */\nexport interface EntityGraph {\n  center: EntityRow;\n  nodes: EntityRow[];\n  edges: GraphEdgeRow[];\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst ENTITY_COLUMNS = [\n  'id',\n  'agent_id',\n  'type',\n  'name',\n  'properties',\n  'first_seen',\n  'last_seen',\n  'status',\n  'machine_id',\n  'synced_at',\n] as const;\n\nconst SELECT_COLUMNS = ENTITY_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Normalize a SQLite result row into a typed EntityRow. */\nfunction toEntityRow(row: Record<string, unknown>): EntityRow {\n  return {\n    id: row.id as string,\n    agent_id: row.agent_id as string,\n    type: row.type as string,\n    name: row.name as string,\n    properties: (row.properties as string) ?? null,\n    first_seen: row.first_seen as number,\n    last_seen: row.last_seen as number,\n    status: (row.status as string) ?? 'active',\n    machine_id: (row.machine_id as string) ?? DEFAULT_MACHINE_ID,\n    synced_at: (row.synced_at as number) ?? null,\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Insert or update an entity. Uses UPSERT on (agent_id, type, name).\n *\n * On conflict, updates properties (if provided) and last_seen.\n */\nexport function insertEntity(data: EntityInsert): EntityRow {\n  const db = getDatabase();\n\n  db.prepare(\n    `INSERT INTO entities (id, agent_id, type, name, properties, first_seen, last_seen, machine_id)\n     VALUES (?, ?, ?, ?, ?, ?, ?, ?)\n     ON CONFLICT (agent_id, type, name) DO UPDATE SET\n       properties = COALESCE(EXCLUDED.properties, entities.properties),\n       last_seen = EXCLUDED.last_seen`,\n  ).run(\n    data.id,\n    data.agent_id,\n    data.type,\n    data.name,\n    data.properties ?? null,\n    data.first_seen,\n    data.last_seen,\n    data.machine_id ?? DEFAULT_MACHINE_ID,\n  );\n\n  // On conflict, the passed-in id may not be the actual row id. Look up by unique key.\n  const row = toEntityRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM entities WHERE agent_id = ? AND type = ? AND name = ?`).get(\n      data.agent_id,\n      data.type,\n      data.name,\n    ) as Record<string, unknown>,\n  );\n\n  syncRow('entities', row);\n\n  return row;\n}\n\n/**\n * Retrieve a single entity by id.\n *\n * @returns the entity row, or null if not found.\n */\nexport function getEntity(id: string): EntityRow | null {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT ${SELECT_COLUMNS} FROM entities WHERE id = ?`,\n  ).get(id) as Record<string, unknown> | undefined;\n\n  if (!row) return null;\n  return toEntityRow(row);\n}\n\n/**\n * List entities with optional filters, ordered by last_seen DESC.\n *\n * Defaults to `status = 'active'` — archived entities are excluded unless\n * `status` is explicitly provided. Pass `status: undefined` in options to\n * get only active entities (the default), or set a specific status string.\n *\n * When both `mentioned_in` and `note_type` are provided, filters to entities\n * referenced in a specific note via the entity_mentions subquery.\n */\nexport function listEntities(\n  options: ListEntitiesOptions = {},\n): EntityRow[] {\n  const db = getDatabase();\n\n  const conditions: string[] = [];\n  const params: unknown[] = [];\n\n  if (options.agent_id !== undefined) {\n    conditions.push(`agent_id = ?`);\n    params.push(options.agent_id);\n  }\n\n  if (options.type !== undefined) {\n    conditions.push(`type = ?`);\n    params.push(options.type);\n  }\n\n  if (options.name !== undefined) {\n    conditions.push(`name = ?`);\n    params.push(options.name);\n  }\n\n  // Default: only show active entities (status column added in v5)\n  if (options.status !== undefined) {\n    conditions.push(`status = ?`);\n    params.push(options.status);\n  } else {\n    conditions.push(`status = ?`);\n    params.push('active');\n  }\n\n  if (options.mentioned_in !== undefined && options.note_type !== undefined) {\n    conditions.push(\n      `id IN (SELECT entity_id FROM entity_mentions WHERE note_id = ? AND note_type = ?)`,\n    );\n    params.push(options.mentioned_in);\n    params.push(options.note_type);\n  }\n\n  const where = conditions.length > 0 ? `WHERE ${conditions.join(' AND ')}` : '';\n  const limit = options.limit ?? 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package/dist/{chunk-KYLDNM7H.js → chunk-FPMEIN2W.js}

@@ -2,7 +2,7 @@ import { createRequire as __cr } from 'node:module'; const require = __cr(import
 import {
   EMBEDDING_REQUEST_TIMEOUT_MS,
   PROVIDER_DETECT_TIMEOUT_MS
-} from "./chunk-5VZ52A4T.js";
+} from "./chunk-76ZO5RGT.js";
 
 // src/cli/providers/cloud-embedding-base.ts
 var ERROR_BODY_PREVIEW_CHARS = 500;
@@ -63,4 +63,4 @@ var CloudEmbeddingBase = class {
 export {
   CloudEmbeddingBase
 };
-//# sourceMappingURL=chunk-KYLDNM7H.js.map
+//# sourceMappingURL=chunk-FPMEIN2W.js.map

package/dist/{chunk-U3IBO3O3.js → chunk-IXOHLPH7.js}

@@ -3,11 +3,12 @@ import {
   EventBuffer
 } from "./chunk-V7XG6V6C.js";
 import {
+  normalizeHookInput,
   readStdin
-} from "./chunk-XNOCTDHF.js";
+} from "./chunk-K2UZNK25.js";
 import {
   DaemonClient
-} from "./chunk-TRUJLI6K.js";
+} from "./chunk-YKOEMLJJ.js";
 import {
   resolveVaultDir
 } from "./chunk-JTYZRPX5.js";
@@ -19,13 +20,13 @@ async function sendEvent(hookName, buildEvent) {
   const VAULT_DIR = resolveVaultDir();
   if (!fs.existsSync(path.join(VAULT_DIR, "myco.yaml"))) return;
   try {
-    const input = JSON.parse(await readStdin());
-    const sessionId = input.session_id ?? process.env.MYCO_SESSION_ID ?? `s-${Date.now()}`;
-    const event = buildEvent(input, sessionId);
+    const rawInput = JSON.parse(await readStdin());
+    const input = normalizeHookInput(rawInput);
+    const event = buildEvent(input);
     const client = new DaemonClient(VAULT_DIR);
-    const result = await client.post("/events", { ...event, session_id: sessionId });
+    const result = await client.post("/events", { ...event, session_id: input.sessionId, agent: input.agent });
     if (!result.ok) {
-      const buffer = new EventBuffer(path.join(VAULT_DIR, "buffer"), sessionId);
+      const buffer = new EventBuffer(path.join(VAULT_DIR, "buffer"), input.sessionId);
       const { session_id: _, ...bufferPayload } = event;
       buffer.append(bufferPayload);
     }
@@ -38,4 +39,4 @@ async function sendEvent(hookName, buildEvent) {
 export {
   sendEvent
 };
-//# sourceMappingURL=chunk-U3IBO3O3.js.map
+//# sourceMappingURL=chunk-IXOHLPH7.js.map

package/dist/chunk-IXOHLPH7.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/hooks/send-event.ts"],"sourcesContent":["/**\n * Shared hook helper — sends an event to the daemon, buffers on failure.\n *\n * Every hook follows the same pattern: read stdin, POST to daemon /events,\n * buffer to disk if the daemon is unreachable. This helper extracts that\n * skeleton so each hook is a one-liner mapping input fields to event fields.\n */\n\nimport { DaemonClient } from './client.js';\nimport { readStdin } from './read-stdin.js';\nimport { normalizeHookInput, type NormalizedHookInput } from './normalize.js';\nimport { EventBuffer } from '../capture/buffer.js';\nimport { resolveVaultDir } from '../vault/resolve.js';\nimport fs from 'node:fs';\nimport path from 'node:path';\n\n/**\n * Read hook stdin, POST event to daemon, buffer on failure.\n *\n * @param hookName — used for error logging (e.g., 'subagent-start')\n * @param buildEvent — maps the normalized hook input to the event payload.\n *   Receives a NormalizedHookInput with canonical field names.\n *   Return the full event object (must include `type`).\n */\nexport async function sendEvent(\n  hookName: string,\n  buildEvent: (input: NormalizedHookInput) => Record<string, unknown>,\n): Promise<void> {\n  const VAULT_DIR = resolveVaultDir();\n  if (!fs.existsSync(path.join(VAULT_DIR, 'myco.yaml'))) return;\n\n  try {\n    const rawInput = JSON.parse(await readStdin()) as Record<string, unknown>;\n    const input = normalizeHookInput(rawInput);\n\n    const event = buildEvent(input);\n\n    const client = new DaemonClient(VAULT_DIR);\n    const result = await client.post('/events', { ...event, session_id: input.sessionId, agent: input.agent });\n\n    if (!result.ok) {\n      const buffer = new EventBuffer(path.join(VAULT_DIR, 'buffer'), input.sessionId);\n      // Strip session_id from buffer entry — it's in the filename\n      const { session_id: _, ...bufferPayload } = event;\n      buffer.append(bufferPayload);\n    }\n  } catch (error) {\n    process.stderr.write(`[myco] ${hookName} error: ${(error as Error).message}\\n`);\n  }\n}\n"],"mappings":";;;;;;;;;;;;;;;;AAaA,OAAO,QAAQ;AACf,OAAO,UAAU;AAUjB,eAAsB,UACpB,UACA,YACe;AACf,QAAM,YAAY,gBAAgB;AAClC,MAAI,CAAC,GAAG,WAAW,KAAK,KAAK,WAAW,WAAW,CAAC,EAAG;AAEvD,MAAI;AACF,UAAM,WAAW,KAAK,MAAM,MAAM,UAAU,CAAC;AAC7C,UAAM,QAAQ,mBAAmB,QAAQ;AAEzC,UAAM,QAAQ,WAAW,KAAK;AAE9B,UAAM,SAAS,IAAI,aAAa,SAAS;AACzC,UAAM,SAAS,MAAM,OAAO,KAAK,WAAW,EAAE,GAAG,OAAO,YAAY,MAAM,WAAW,OAAO,MAAM,MAAM,CAAC;AAEzG,QAAI,CAAC,OAAO,IAAI;AACd,YAAM,SAAS,IAAI,YAAY,KAAK,KAAK,WAAW,QAAQ,GAAG,MAAM,SAAS;AAE9E,YAAM,EAAE,YAAY,GAAG,GAAG,cAAc,IAAI;AAC5C,aAAO,OAAO,aAAa;AAAA,IAC7B;AAAA,EACF,SAAS,OAAO;AACd,YAAQ,OAAO,MAAM,UAAU,QAAQ,WAAY,MAAgB,OAAO;AAAA,CAAI;AAAA,EAChF;AACF;","names":[]}

package/dist/{chunk-PB6TOLRQ.js → chunk-JYXMRW3T.js}

@@ -11,7 +11,7 @@ var cached;
 function getPluginVersion() {
   if (cached) return cached;
   if (true) {
-    cached = "0.9.0";
+    cached = "0.11.0";
     return cached;
   }
   const root = findPackageRoot(path.dirname(fileURLToPath(import.meta.url)));
@@ -32,4 +32,4 @@ function getPluginVersion() {
 export {
   getPluginVersion
 };
-//# sourceMappingURL=chunk-PB6TOLRQ.js.map
+//# sourceMappingURL=chunk-JYXMRW3T.js.map

package/dist/chunk-K2UZNK25.js

@@ -0,0 +1,83 @@
+import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
+import {
+  STDIN_TIMEOUT_MS
+} from "./chunk-76ZO5RGT.js";
+import {
+  loadManifests
+} from "./chunk-QFMBZ72S.js";
+
+// src/hooks/read-stdin.ts
+function readStdin() {
+  return new Promise((resolve) => {
+    let data = "";
+    process.stdin.on("data", (chunk) => {
+      data += chunk;
+    });
+    process.stdin.on("end", () => resolve(data));
+    setTimeout(() => resolve(data || "{}"), STDIN_TIMEOUT_MS);
+  });
+}
+
+// src/hooks/normalize.ts
+var DEFAULT_HOOK_FIELDS = {
+  sessionId: "session_id",
+  transcriptPath: "transcript_path",
+  lastResponse: "last_assistant_message",
+  prompt: "prompt",
+  toolName: "tool_name",
+  toolInput: "tool_input",
+  toolOutput: "tool_output"
+};
+var DEFAULT_AGENT_NAME = "claude-code";
+var cachedManifest;
+function detectManifest() {
+  if (cachedManifest !== void 0) return cachedManifest;
+  const manifests = loadManifests();
+  for (const m of manifests) {
+    if (process.env[m.pluginRootEnvVar]) {
+      cachedManifest = m;
+      return m;
+    }
+  }
+  for (const m of manifests) {
+    if (m.hookFields.sessionIdEnv && process.env[m.hookFields.sessionIdEnv]) {
+      cachedManifest = m;
+      return m;
+    }
+  }
+  cachedManifest = null;
+  return null;
+}
+function resolveField(input, fieldPath) {
+  const parts = fieldPath.split(".");
+  let current = input;
+  for (const part of parts) {
+    if (current === null || current === void 0 || typeof current !== "object") return void 0;
+    current = current[part];
+  }
+  return current;
+}
+function normalizeHookInput(input) {
+  const manifest = detectManifest();
+  const fields = manifest?.hookFields ?? DEFAULT_HOOK_FIELDS;
+  const sessionIdFromInput = resolveField(input, fields.sessionId);
+  const sessionIdFromEnv = "sessionIdEnv" in fields && fields.sessionIdEnv ? process.env[fields.sessionIdEnv] : void 0;
+  const sessionId = sessionIdFromInput ?? sessionIdFromEnv ?? process.env.MYCO_SESSION_ID ?? `s-${Date.now()}`;
+  return {
+    agent: manifest?.name ?? DEFAULT_AGENT_NAME,
+    sessionId,
+    transcriptPath: resolveField(input, fields.transcriptPath),
+    lastResponse: resolveField(input, fields.lastResponse),
+    prompt: resolveField(input, fields.prompt),
+    toolName: resolveField(input, fields.toolName),
+    toolInput: resolveField(input, fields.toolInput),
+    toolOutput: resolveField(input, fields.toolOutput),
+    raw: input
+  };
+}
+
+export {
+  readStdin,
+  normalizeHookInput
+};
+//# sourceMappingURL=chunk-K2UZNK25.js.map

package/dist/chunk-K2UZNK25.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/hooks/read-stdin.ts","../src/hooks/normalize.ts"],"sourcesContent":["import { STDIN_TIMEOUT_MS } from '../constants.js';\n\nexport function readStdin(): Promise<string> {\n  return new Promise((resolve) => {\n    let data = '';\n    process.stdin.on('data', (chunk: Buffer) => { data += chunk; });\n    process.stdin.on('end', () => resolve(data));\n    setTimeout(() => resolve(data || '{}'), STDIN_TIMEOUT_MS);\n  });\n}\n","/**\n * Hook payload normalization layer.\n *\n * Each agent sends different field names in hook stdin (e.g., Claude Code uses\n * `session_id`, VS Code uses `sessionId`, Windsurf uses `trajectory_id`).\n * This module detects the active agent, loads its manifest, and maps the\n * raw input to a canonical shape that all hooks can consume uniformly.\n */\n\nimport { loadManifests } from '../symbionts/detect.js';\nimport type { SymbiontManifest } from '../symbionts/manifest-schema.js';\n\n/** Default field mappings when no agent manifest is detected (Claude Code conventions). */\nconst DEFAULT_HOOK_FIELDS = {\n  sessionId: 'session_id',\n  transcriptPath: 'transcript_path',\n  lastResponse: 'last_assistant_message',\n  prompt: 'prompt',\n  toolName: 'tool_name',\n  toolInput: 'tool_input',\n  toolOutput: 'tool_output',\n} as const;\n\n/** Canonical hook input with normalized field names. */\nexport interface NormalizedHookInput {\n  /** Detected agent name from manifest (e.g., 'claude-code', 'codex', 'windsurf'). */\n  agent: string;\n  sessionId: string;\n  transcriptPath?: string;\n  lastResponse?: string;\n  prompt?: string;\n  toolName?: string;\n  toolInput?: unknown;\n  toolOutput?: unknown;\n  /** The full raw input for any fields not covered by the mapping. */\n  raw: Record<string, unknown>;\n}\n\n/** Default agent name when no manifest is detected. */\nconst DEFAULT_AGENT_NAME = 'claude-code';\n\n/** Cached manifest for the detected agent — resolved once per process. */\nlet cachedManifest: SymbiontManifest | null | undefined;\n\nfunction detectManifest(): SymbiontManifest | null {\n  if (cachedManifest !== undefined) return cachedManifest;\n\n  const manifests = loadManifests();\n\n  // Try env-var detection: check pluginRootEnvVar for each manifest\n  for (const m of manifests) {\n    if (process.env[m.pluginRootEnvVar]) {\n      cachedManifest = m;\n      return m;\n    }\n  }\n\n  // Fallback: check sessionIdEnv (e.g., GEMINI_SESSION_ID)\n  for (const m of manifests) {\n    if (m.hookFields.sessionIdEnv && process.env[m.hookFields.sessionIdEnv]) {\n      cachedManifest = m;\n      return m;\n    }\n  }\n\n  cachedManifest = null;\n  return null;\n}\n\n/**\n * Resolve a potentially nested field path from the input.\n * Supports dot notation for nested objects (e.g., \"tool_info.command_line\").\n */\nfunction resolveField(input: Record<string, unknown>, fieldPath: string): unknown {\n  const parts = fieldPath.split('.');\n  let current: unknown = input;\n  for (const part of parts) {\n    if (current === null || current === undefined || typeof current !== 'object') return undefined;\n    current = (current as Record<string, unknown>)[part];\n  }\n  return current;\n}\n\n/**\n * Normalize a raw hook input using the active agent's manifest field mappings.\n * Falls back to Claude Code field names if no agent is detected.\n */\nexport function normalizeHookInput(input: Record<string, unknown>): NormalizedHookInput {\n  const manifest = detectManifest();\n  const fields = manifest?.hookFields ?? DEFAULT_HOOK_FIELDS;\n\n  // Resolve session ID: try the mapped field, then env var fallback, then MYCO_SESSION_ID\n  const sessionIdFromInput = resolveField(input, fields.sessionId) as string | undefined;\n  const sessionIdFromEnv = 'sessionIdEnv' in fields && fields.sessionIdEnv\n    ? process.env[fields.sessionIdEnv]\n    : undefined;\n  const sessionId = sessionIdFromInput\n    ?? sessionIdFromEnv\n    ?? process.env.MYCO_SESSION_ID\n    ?? `s-${Date.now()}`;\n\n  return {\n    agent: manifest?.name ?? 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