@goondocks/myco 0.5.0 → 0.6.0

package/dist/{chunk-MIU3DKLN.js → chunk-GNR3QAER.js}

@@ -1,7 +1,7 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   require_dist
-} from "./chunk-6UJWI4IW.js";
+} from "./chunk-MQSYSQ6T.js";
 import {
   __toESM
 } from "./chunk-PZUWP5VK.js";
@@ -34,4 +34,4 @@ export {
   sessionFm,
   sporeFm
 };
-//# sourceMappingURL=chunk-MIU3DKLN.js.map
+//# sourceMappingURL=chunk-GNR3QAER.js.map

package/dist/{chunk-BMJX2IDQ.js → chunk-H7PRCVGQ.js}

@@ -1,7 +1,7 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   LEVEL_ORDER
-} from "./chunk-5EZ7QF6J.js";
+} from "./chunk-QLUE3BUL.js";
 
 // src/logs/reader.ts
 import fs from "fs";
@@ -88,4 +88,4 @@ export {
   queryLogs,
   matchesFilter
 };
-//# sourceMappingURL=chunk-BMJX2IDQ.js.map
+//# sourceMappingURL=chunk-H7PRCVGQ.js.map

package/dist/{chunk-6LTNFMXO.js → chunk-KC7ENQTN.js}

@@ -1,7 +1,7 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   require_dist
-} from "./chunk-6UJWI4IW.js";
+} from "./chunk-MQSYSQ6T.js";
 import {
   __toESM
 } from "./chunk-PZUWP5VK.js";
@@ -433,4 +433,4 @@ export {
   extractSection,
   VaultWriter
 };
-//# sourceMappingURL=chunk-6LTNFMXO.js.map
+//# sourceMappingURL=chunk-KC7ENQTN.js.map

package/dist/chunk-KUMVJIJW.js

@@ -0,0 +1,117 @@
+import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
+import {
+  VaultWriter
+} from "./chunk-KC7ENQTN.js";
+import {
+  supersedeSpore
+} from "./chunk-UVGAVYWZ.js";
+import {
+  indexNote
+} from "./chunk-24DOZEUJ.js";
+import {
+  generateEmbedding
+} from "./chunk-RGVBGTD6.js";
+import {
+  stripFrontmatter
+} from "./chunk-GNR3QAER.js";
+import {
+  DIGEST_TIERS,
+  EMBEDDING_INPUT_LIMIT
+} from "./chunk-6BSDCZ5Q.js";
+
+// src/mcp/tools/context.ts
+import fs from "fs";
+import path from "path";
+var DEFAULT_CONTEXT_TIER = 3e3;
+function tryReadExtract(filePath, tier, fallback) {
+  let raw;
+  try {
+    raw = fs.readFileSync(filePath, "utf-8");
+  } catch {
+    return null;
+  }
+  const { body, frontmatter } = stripFrontmatter(raw);
+  const generated = frontmatter.generated;
+  return {
+    content: body,
+    tier,
+    fallback,
+    generated
+  };
+}
+function handleMycoContext(vaultDir, input) {
+  const requestedTier = input.tier ?? DEFAULT_CONTEXT_TIER;
+  const digestDir = path.join(vaultDir, "digest");
+  const exact = tryReadExtract(path.join(digestDir, `extract-${requestedTier}.md`), requestedTier, false);
+  if (exact) return exact;
+  const candidates = [...DIGEST_TIERS].sort((a, b) => Math.abs(a - requestedTier) - Math.abs(b - requestedTier));
+  for (const tier of candidates) {
+    const result = tryReadExtract(path.join(digestDir, `extract-${tier}.md`), tier, true);
+    if (result) return result;
+  }
+  return {
+    content: "Digest context is not yet available. The first digest cycle has not completed.",
+    tier: requestedTier,
+    fallback: false
+  };
+}
+
+// src/vault/consolidation.ts
+import { randomBytes } from "crypto";
+async function consolidateSpores(input, deps) {
+  const { vaultDir, index, vectorIndex, embeddingProvider } = deps;
+  const writer = new VaultWriter(vaultDir);
+  const wisdomId = `${input.observationType}-wisdom-${randomBytes(4).toString("hex")}`;
+  const sourceLinks = input.sourceSporeIds.map((id) => `- [[${id}]]`).join("\n");
+  const sourcesSection = input.sourceSporeIds.length > 0 ? `
+
+## Sources
+
+Consolidated from:
+${sourceLinks}` : "";
+  const fullContent = `${input.consolidatedContent}${sourcesSection}`;
+  const wisdomPath = writer.writeSpore({
+    id: wisdomId,
+    observation_type: input.observationType,
+    tags: [...input.tags ?? [], "wisdom", "consolidated"],
+    content: fullContent
+  });
+  writer.updateNoteFrontmatter(wisdomPath, {
+    consolidated_from: input.sourceSporeIds
+  }, true);
+  const sourceNotes = index.queryByIds(input.sourceSporeIds);
+  const sourceNoteMap = new Map(sourceNotes.map((n) => [n.id, n]));
+  let sourcesArchived = 0;
+  for (const sourceId of input.sourceSporeIds) {
+    const note = sourceNoteMap.get(sourceId);
+    if (!note) continue;
+    const superseded = supersedeSpore(sourceId, wisdomId, note.path, {
+      index,
+      vectorIndex,
+      vaultDir
+    });
+    if (superseded) sourcesArchived++;
+  }
+  indexNote(index, vaultDir, wisdomPath);
+  if (vectorIndex && embeddingProvider) {
+    generateEmbedding(embeddingProvider, fullContent.slice(0, EMBEDDING_INPUT_LIMIT)).then(
+      (emb) => vectorIndex.upsert(wisdomId, emb.embedding, {
+        type: "spore",
+        observation_type: input.observationType,
+        importance: "high"
+      })
+    ).catch(() => {
+    });
+  }
+  return {
+    wisdom_id: wisdomId,
+    wisdom_path: wisdomPath,
+    sources_archived: sourcesArchived
+  };
+}
+
+export {
+  consolidateSpores,
+  handleMycoContext
+};
+//# sourceMappingURL=chunk-KUMVJIJW.js.map

package/dist/chunk-KUMVJIJW.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/mcp/tools/context.ts","../src/vault/consolidation.ts"],"sourcesContent":["import fs from 'node:fs';\nimport path from 'node:path';\nimport { stripFrontmatter } from '../../vault/frontmatter.js';\nimport { DIGEST_TIERS } from '../../constants.js';\n\n/** Default tier when none is requested. */\nconst DEFAULT_CONTEXT_TIER = 3000;\n\ninterface ContextInput {\n  tier?: number;\n}\n\nexport interface ContextResult {\n  content: string;\n  tier: number;\n  fallback: boolean;\n  generated?: string;\n}\n\n/**\n * Try to read a digest extract file. Returns null if the file doesn't exist.\n * Strips YAML frontmatter and extracts the generated timestamp.\n */\nfunction tryReadExtract(filePath: string, tier: number, fallback: boolean): ContextResult | null {\n  let raw: string;\n  try {\n    raw = fs.readFileSync(filePath, 'utf-8');\n  } catch {\n    return null;\n  }\n\n  const { body, frontmatter } = stripFrontmatter(raw);\n  const generated = frontmatter.generated as string | undefined;\n\n  return {\n    content: body,\n    tier,\n    fallback,\n    generated,\n  };\n}\n\nexport function handleMycoContext(vaultDir: string, input: ContextInput): ContextResult {\n  const requestedTier = input.tier ?? DEFAULT_CONTEXT_TIER;\n  const digestDir = path.join(vaultDir, 'digest');\n\n  // Try exact tier first\n  const exact = tryReadExtract(path.join(digestDir, `extract-${requestedTier}.md`), requestedTier, false);\n  if (exact) return exact;\n\n  // Fall back to nearest available tier\n  const candidates = [...DIGEST_TIERS]\n    .sort((a, b) => Math.abs(a - requestedTier) - Math.abs(b - requestedTier));\n\n  for (const tier of candidates) {\n    const result = tryReadExtract(path.join(digestDir, `extract-${tier}.md`), tier, true);\n    if (result) return result;\n  }\n\n  return {\n    content: 'Digest context is not yet available. The first digest cycle has not completed.',\n    tier: requestedTier,\n    fallback: false,\n  };\n}\n","/**\n * Shared consolidation core — creates a wisdom note from a set of source spores\n * and marks each source as superseded.\n *\n * Used by both the MCP tool (`myco_consolidate`) and the daemon's automatic\n * consolidation pass so the logic lives in exactly one place.\n */\n\nimport { VaultWriter } from './writer.js';\nimport { supersedeSpore } from './curation.js';\nimport { indexNote } from '../index/rebuild.js';\nimport type { MycoIndex } from '../index/sqlite.js';\nimport type { VectorIndex } from '../index/vectors.js';\nimport type { EmbeddingProvider } from '../intelligence/llm.js';\nimport { generateEmbedding } from '../intelligence/embeddings.js';\nimport { EMBEDDING_INPUT_LIMIT } from '../constants.js';\nimport { randomBytes } from 'node:crypto';\n\nexport interface ConsolidateInput {\n  sourceSporeIds: string[];\n  consolidatedContent: string;\n  observationType: string;\n  tags?: string[];\n}\n\nexport interface ConsolidateResult {\n  wisdom_id: string;\n  wisdom_path: string;\n  sources_archived: number;\n}\n\nexport interface ConsolidateDeps {\n  vaultDir: string;\n  index: MycoIndex;\n  vectorIndex: VectorIndex | null;\n  embeddingProvider: EmbeddingProvider | null;\n}\n\n/**\n * Create a consolidated wisdom note from a list of source spore IDs, then\n * mark each source spore as superseded.\n *\n * - The wisdom note is written via VaultWriter.writeSpore() with 'wisdom' and\n *   'consolidated' tags appended.\n * - `consolidated_from` is added to the wisdom note's frontmatter.\n * - Each source spore is updated atomically via `supersedeSpore` (frontmatter\n *   update + notice append + re-index + vector deletion).\n * - The wisdom note is indexed and, if deps are available, embedded with\n *   importance 'high' (fire-and-forget).\n *\n * Source spores missing from the index are silently skipped.\n */\nexport async function consolidateSpores(\n  input: ConsolidateInput,\n  deps: ConsolidateDeps,\n): Promise<ConsolidateResult> {\n  const { vaultDir, index, vectorIndex, embeddingProvider } = deps;\n  const writer = new VaultWriter(vaultDir);\n\n  const wisdomId = `${input.observationType}-wisdom-${randomBytes(4).toString('hex')}`;\n\n  // Build content with a ## Sources section containing Obsidian wikilinks\n  const sourceLinks = input.sourceSporeIds.map((id) => `- [[${id}]]`).join('\\n');\n  const sourcesSection = input.sourceSporeIds.length > 0\n    ? `\\n\\n## Sources\\n\\nConsolidated from:\\n${sourceLinks}`\n    : '';\n  const fullContent = `${input.consolidatedContent}${sourcesSection}`;\n\n  // Write the wisdom spore note\n  const wisdomPath = writer.writeSpore({\n    id: wisdomId,\n    observation_type: input.observationType,\n    tags: [...(input.tags ?? []), 'wisdom', 'consolidated'],\n    content: fullContent,\n  });\n\n  // Add consolidated_from to the wisdom note's frontmatter\n  writer.updateNoteFrontmatter(wisdomPath, {\n    consolidated_from: input.sourceSporeIds,\n  }, true);\n\n  // Supersede each source spore (atomic frontmatter update + notice + re-index + vector delete)\n  const sourceNotes = index.queryByIds(input.sourceSporeIds);\n  const sourceNoteMap = new Map(sourceNotes.map((n) => [n.id, n]));\n  let sourcesArchived = 0;\n  for (const sourceId of input.sourceSporeIds) {\n    const note = sourceNoteMap.get(sourceId);\n    if (!note) continue;\n\n    const superseded = supersedeSpore(sourceId, wisdomId, note.path, {\n      index,\n      vectorIndex,\n      vaultDir,\n    });\n\n    if (superseded) sourcesArchived++;\n  }\n\n  // Index the new wisdom note\n  indexNote(index, vaultDir, wisdomPath);\n\n  // Embed the wisdom note (fire-and-forget — embedding failure is non-fatal)\n  if (vectorIndex && embeddingProvider) {\n    generateEmbedding(embeddingProvider, fullContent.slice(0, EMBEDDING_INPUT_LIMIT))\n      .then((emb) =>\n        vectorIndex.upsert(wisdomId, emb.embedding, {\n          type: 'spore',\n          observation_type: input.observationType,\n          importance: 'high',\n        }),\n      )\n      .catch(() => { /* embedding failure is non-fatal */ });\n  }\n\n  return {\n    wisdom_id: wisdomId,\n    wisdom_path: wisdomPath,\n    sources_archived: sourcesArchived,\n  };\n}\n"],"mappings":";;;;;;;;;;;;;;;;;;;;;;AAAA,OAAO,QAAQ;AACf,OAAO,UAAU;AAKjB,IAAM,uBAAuB;AAiB7B,SAAS,eAAe,UAAkB,MAAc,UAAyC;AAC/F,MAAI;AACJ,MAAI;AACF,UAAM,GAAG,aAAa,UAAU,OAAO;AAAA,EACzC,QAAQ;AACN,WAAO;AAAA,EACT;AAEA,QAAM,EAAE,MAAM,YAAY,IAAI,iBAAiB,GAAG;AAClD,QAAM,YAAY,YAAY;AAE9B,SAAO;AAAA,IACL,SAAS;AAAA,IACT;AAAA,IACA;AAAA,IACA;AAAA,EACF;AACF;AAEO,SAAS,kBAAkB,UAAkB,OAAoC;AACtF,QAAM,gBAAgB,MAAM,QAAQ;AACpC,QAAM,YAAY,KAAK,KAAK,UAAU,QAAQ;AAG9C,QAAM,QAAQ,eAAe,KAAK,KAAK,WAAW,WAAW,aAAa,KAAK,GAAG,eAAe,KAAK;AACtG,MAAI,MAAO,QAAO;AAGlB,QAAM,aAAa,CAAC,GAAG,YAAY,EAChC,KAAK,CAAC,GAAG,MAAM,KAAK,IAAI,IAAI,aAAa,IAAI,KAAK,IAAI,IAAI,aAAa,CAAC;AAE3E,aAAW,QAAQ,YAAY;AAC7B,UAAM,SAAS,eAAe,KAAK,KAAK,WAAW,WAAW,IAAI,KAAK,GAAG,MAAM,IAAI;AACpF,QAAI,OAAQ,QAAO;AAAA,EACrB;AAEA,SAAO;AAAA,IACL,SAAS;AAAA,IACT,MAAM;AAAA,IACN,UAAU;AAAA,EACZ;AACF;;;AChDA,SAAS,mBAAmB;AAoC5B,eAAsB,kBACpB,OACA,MAC4B;AAC5B,QAAM,EAAE,UAAU,OAAO,aAAa,kBAAkB,IAAI;AAC5D,QAAM,SAAS,IAAI,YAAY,QAAQ;AAEvC,QAAM,WAAW,GAAG,MAAM,eAAe,WAAW,YAAY,CAAC,EAAE,SAAS,KAAK,CAAC;AAGlF,QAAM,cAAc,MAAM,eAAe,IAAI,CAAC,OAAO,OAAO,EAAE,IAAI,EAAE,KAAK,IAAI;AAC7E,QAAM,iBAAiB,MAAM,eAAe,SAAS,IACjD;AAAA;AAAA;AAAA;AAAA;AAAA,EAAyC,WAAW,KACpD;AACJ,QAAM,cAAc,GAAG,MAAM,mBAAmB,GAAG,cAAc;AAGjE,QAAM,aAAa,OAAO,WAAW;AAAA,IACnC,IAAI;AAAA,IACJ,kBAAkB,MAAM;AAAA,IACxB,MAAM,CAAC,GAAI,MAAM,QAAQ,CAAC,GAAI,UAAU,cAAc;AAAA,IACtD,SAAS;AAAA,EACX,CAAC;AAGD,SAAO,sBAAsB,YAAY;AAAA,IACvC,mBAAmB,MAAM;AAAA,EAC3B,GAAG,IAAI;AAGP,QAAM,cAAc,MAAM,WAAW,MAAM,cAAc;AACzD,QAAM,gBAAgB,IAAI,IAAI,YAAY,IAAI,CAAC,MAAM,CAAC,EAAE,IAAI,CAAC,CAAC,CAAC;AAC/D,MAAI,kBAAkB;AACtB,aAAW,YAAY,MAAM,gBAAgB;AAC3C,UAAM,OAAO,cAAc,IAAI,QAAQ;AACvC,QAAI,CAAC,KAAM;AAEX,UAAM,aAAa,eAAe,UAAU,UAAU,KAAK,MAAM;AAAA,MAC/D;AAAA,MACA;AAAA,MACA;AAAA,IACF,CAAC;AAED,QAAI,WAAY;AAAA,EAClB;AAGA,YAAU,OAAO,UAAU,UAAU;AAGrC,MAAI,eAAe,mBAAmB;AACpC,sBAAkB,mBAAmB,YAAY,MAAM,GAAG,qBAAqB,CAAC,EAC7E;AAAA,MAAK,CAAC,QACL,YAAY,OAAO,UAAU,IAAI,WAAW;AAAA,QAC1C,MAAM;AAAA,QACN,kBAAkB,MAAM;AAAA,QACxB,YAAY;AAAA,MACd,CAAC;AAAA,IACH,EACC,MAAM,MAAM;AAAA,IAAuC,CAAC;AAAA,EACzD;AAEA,SAAO;AAAA,IACL,WAAW;AAAA,IACX,aAAa;AAAA,IACb,kBAAkB;AAAA,EACpB;AACF;","names":[]}

package/dist/{chunk-ND4VK6C7.js → chunk-L25U7PIG.js}

@@ -1,7 +1,7 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   STDIN_TIMEOUT_MS
-} from "./chunk-B6WVNDA5.js";
+} from "./chunk-6BSDCZ5Q.js";
 
 // src/hooks/read-stdin.ts
 function readStdin() {
@@ -18,4 +18,4 @@ function readStdin() {
 export {
   readStdin
 };
-//# sourceMappingURL=chunk-ND4VK6C7.js.map
+//# sourceMappingURL=chunk-L25U7PIG.js.map

package/dist/{chunk-6UJWI4IW.js → chunk-MQSYSQ6T.js}

@@ -21064,14 +21064,14 @@ config(en_default());
 
 // src/config/schema.ts
 var LlmProviderSchema = external_exports.object({
-  provider: external_exports.enum(["ollama", "lm-studio", "anthropic"]).default("ollama"),
+  provider: external_exports.enum(["ollama", "lm-studio", "anthropic", "openai-compatible"]).default("ollama"),
   model: external_exports.string().default("qwen3.5"),
   base_url: external_exports.string().url().optional(),
   context_window: external_exports.number().int().positive().default(8192),
   max_tokens: external_exports.number().int().positive().default(1024)
 });
 var EmbeddingProviderSchema = external_exports.object({
-  provider: external_exports.enum(["ollama", "lm-studio"]).default("ollama"),
+  provider: external_exports.enum(["ollama", "lm-studio", "openai-compatible"]).default("ollama"),
   model: external_exports.string().default("bge-m3"),
   base_url: external_exports.string().url().optional()
 });
@@ -21080,6 +21080,7 @@ var IntelligenceSchema = external_exports.object({
   embedding: EmbeddingProviderSchema.default(() => EmbeddingProviderSchema.parse({}))
 });
 var DaemonSchema = external_exports.object({
+  port: external_exports.number().int().min(1024).max(65535).nullable().default(null),
   log_level: external_exports.enum(["debug", "info", "warn", "error"]).default("info"),
   grace_period: external_exports.number().int().positive().default(30),
   max_log_size: external_exports.number().int().positive().default(5242880)
@@ -21117,7 +21118,7 @@ var TeamSchema = external_exports.object({
   sync: external_exports.enum(["git", "obsidian-sync", "manual"]).default("git")
 });
 var DigestIntelligenceSchema = external_exports.object({
-  provider: external_exports.enum(["ollama", "lm-studio", "anthropic"]).nullable().default(null),
+  provider: external_exports.enum(["ollama", "lm-studio", "anthropic", "openai-compatible"]).nullable().default(null),
   model: external_exports.string().nullable().default(null),
   base_url: external_exports.string().nullable().default(null),
   context_window: external_exports.number().int().positive().default(32768),
@@ -21140,7 +21141,8 @@ var DigestSchema = external_exports.object({
   inject_tier: external_exports.number().int().positive().nullable().default(3e3),
   intelligence: DigestIntelligenceSchema.default(() => DigestIntelligenceSchema.parse({})),
   metabolism: DigestMetabolismSchema.default(() => DigestMetabolismSchema.parse({})),
-  substrate: DigestSubstrateSchema.default(() => DigestSubstrateSchema.parse({}))
+  substrate: DigestSubstrateSchema.default(() => DigestSubstrateSchema.parse({})),
+  consolidation: external_exports.boolean().default(false)
 });
 var MycoConfigSchema = external_exports.object({
   version: external_exports.literal(2),
@@ -21178,4 +21180,4 @@ export {
   external_exports,
   MycoConfigSchema
 };
-//# sourceMappingURL=chunk-6UJWI4IW.js.map
+//# sourceMappingURL=chunk-MQSYSQ6T.js.map