@goondocks/myco 0.4.3 → 0.5.0

package/dist/{reprocess-7G7KQWCN.js → reprocess-ZL4HKTSC.js}

@@ -1,44 +1,49 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
-import {
-  BufferProcessor,
-  TranscriptMiner,
-  writeObservationNotes
-} from "./chunk-V2OWD2VV.js";
 import {
   EMBEDDING_BATCH_CONCURRENCY,
   LLM_BATCH_CONCURRENCY,
   batchExecute
 } from "./chunk-3JCXYLHD.js";
+import {
+  BufferProcessor,
+  SUMMARIZATION_FAILED_MARKER,
+  TranscriptMiner,
+  writeObservationNotes
+} from "./chunk-R6LQT3U7.js";
 import {
   VaultWriter,
   bareSessionId,
+  callout,
+  extractSection,
   sessionNoteId
-} from "./chunk-I7PNZEBO.js";
+} from "./chunk-6LTNFMXO.js";
 import {
   indexNote,
   require_gray_matter
-} from "./chunk-FPEDTLQ6.js";
+} from "./chunk-JJL6AMDA.js";
 import {
   generateEmbedding
 } from "./chunk-RGVBGTD6.js";
-import {
-  createEmbeddingProvider,
-  createLlmProvider
-} from "./chunk-IYFKPSRP.js";
 import {
   VectorIndex
 } from "./chunk-XQXXF6MU.js";
+import "./chunk-KYL67SKZ.js";
+import "./chunk-2AMAOSRF.js";
+import {
+  createEmbeddingProvider,
+  createLlmProvider
+} from "./chunk-RCV2I4AI.js";
 import {
   initFts
 } from "./chunk-6FQISQNA.js";
 import {
   MycoIndex
 } from "./chunk-AK6GNLPV.js";
-import "./chunk-GFBG73P4.js";
+import "./chunk-FIRMTYFH.js";
 import {
   parseStringFlag
 } from "./chunk-SAKJMNSR.js";
-import "./chunk-67R6EMYD.js";
+import "./chunk-JI6M2L2W.js";
 import {
   loadConfig
 } from "./chunk-TBRZAJ7W.js";
@@ -46,10 +51,10 @@ import "./chunk-6UJWI4IW.js";
 import {
   claudeCodeAdapter,
   createPerProjectAdapter
-} from "./chunk-BNIYWCST.js";
+} from "./chunk-X6TKHO22.js";
 import {
   EMBEDDING_INPUT_LIMIT
-} from "./chunk-JBD5KP5G.js";
+} from "./chunk-B6WVNDA5.js";
 import {
   __toESM
 } from "./chunk-PZUWP5VK.js";
@@ -58,8 +63,17 @@ import {
 import fs from "fs";
 import path from "path";
 var import_gray_matter = __toESM(require_gray_matter(), 1);
+var CONVERSATION_HEADING = "## Conversation";
+function updateTitleAndSummary(body, newTitle, newNarrative) {
+  let updated = body.replace(/^# .*/m, `# ${newTitle}`);
+  const summaryCallout = callout("abstract", "Summary", newNarrative);
+  updated = updated.replace(/> \[!abstract\] Summary\n(?:> .*\n?)*/m, summaryCallout + "\n");
+  return updated;
+}
 async function run(args, vaultDir) {
   const sessionFilter = parseStringFlag(args, "--session");
+  const dateFilter = parseStringFlag(args, "--date");
+  const failedOnly = args.includes("--failed");
   const skipLlm = args.includes("--index-only");
   const config = loadConfig(vaultDir);
   const index = new MycoIndex(path.join(vaultDir, "index.db"));
@@ -73,7 +87,7 @@ async function run(args, vaultDir) {
   } catch (e) {
     console.log(`Vector index unavailable: ${e.message}`);
   }
-  const processor = llmProvider ? new BufferProcessor(llmProvider, config.intelligence.llm.context_window) : null;
+  const processor = llmProvider ? new BufferProcessor(llmProvider, config.intelligence.llm.context_window, config.capture) : null;
   const writer = new VaultWriter(vaultDir);
   const miner = new TranscriptMiner({
     additionalAdapters: config.capture.transcript_paths.map(
@@ -89,6 +103,7 @@ async function run(args, vaultDir) {
   }
   const sessionFiles = [];
   for (const dateDir of fs.readdirSync(sessionsDir)) {
+    if (dateFilter && dateDir !== dateFilter) continue;
     const datePath = path.join(sessionsDir, dateDir);
     if (!fs.statSync(datePath).isDirectory()) continue;
     for (const file of fs.readdirSync(datePath)) {
@@ -102,16 +117,23 @@ async function run(args, vaultDir) {
     }
   }
   if (sessionFiles.length === 0) {
-    console.log(sessionFilter ? `No sessions matching "${sessionFilter}" found.` : "No sessions found.");
+    const filters = [sessionFilter && `session="${sessionFilter}"`, dateFilter && `date="${dateFilter}"`].filter(Boolean);
+    console.log(filters.length ? `No sessions matching ${filters.join(", ")} found.` : "No sessions found.");
     index.close();
     vectorIndex?.close();
     return;
   }
-  const tasks = sessionFiles.map(({ relativePath, sessionId }) => {
-    const raw = fs.readFileSync(path.join(vaultDir, relativePath), "utf-8");
-    const { data: frontmatter } = (0, import_gray_matter.default)(raw);
+  let tasks = [];
+  for (const { relativePath, sessionId } of sessionFiles) {
+    const rawContent = fs.readFileSync(path.join(vaultDir, relativePath), "utf-8");
+    const { data: frontmatter, content: body } = (0, import_gray_matter.default)(rawContent);
+    const hasFailed = body.includes(SUMMARIZATION_FAILED_MARKER);
+    if (failedOnly && !hasFailed) continue;
     const bare = bareSessionId(sessionId);
     const turnsResult = miner.getAllTurnsWithSource(bare);
+    const conversationSection = extractSection(body, CONVERSATION_HEADING);
+    const fmEnd = rawContent.indexOf("---", 4);
+    const frontmatterBlock = rawContent.slice(0, fmEnd + 3);
     const batchEvents = turnsResult && turnsResult.turns.length > 0 ? turnsResult.turns.map((t) => ({
       type: "turn",
       prompt: t.prompt,
@@ -119,8 +141,19 @@ async function run(args, vaultDir) {
       response: t.aiResponse ?? "",
       timestamp: t.timestamp
     })) : null;
-    return { relativePath, sessionId, bare, frontmatter, batchEvents, turnCount: turnsResult?.turns.length ?? 0 };
-  });
+    tasks.push({ relativePath, sessionId, bare, frontmatter, frontmatterBlock, body, conversationSection, batchEvents, turnCount: turnsResult?.turns.length ?? 0, hasFailed });
+  }
+  if (failedOnly) {
+    console.log(`Found ${tasks.length} failed session(s) out of ${sessionFiles.length} checked.
+`);
+  }
+  if (tasks.length === 0) {
+    const filters = [sessionFilter && `session="${sessionFilter}"`, dateFilter && `date="${dateFilter}"`, failedOnly && "failed"].filter(Boolean);
+    console.log(filters.length ? `No sessions matching ${filters.join(", ")} found.` : "No sessions found.");
+    index.close();
+    vectorIndex?.close();
+    return;
+  }
   console.log(`Reprocessing ${tasks.length} session(s)...
 `);
   const embedJobs = [];
@@ -170,6 +203,44 @@ Extraction complete: ${done} sessions processed.`);
   for (const r of extractionResult.results) {
     if (r.status === "fulfilled") totalObservations += r.value;
   }
+  let summarized = 0;
+  if (processor) {
+    const summarizableTasks = tasks.filter((t) => t.conversationSection);
+    if (summarizableTasks.length > 0) {
+      console.log(`
+Regenerating summaries...`);
+      const summaryResult = await batchExecute(
+        summarizableTasks,
+        async (task) => {
+          process.stdout.write(`  ${task.sessionId.slice(0, 12)}...`);
+          const user = typeof task.frontmatter.user === "string" ? task.frontmatter.user : void 0;
+          const result = await processor.summarizeSession(task.conversationSection, task.bare, user);
+          if (result.summary.includes(SUMMARIZATION_FAILED_MARKER)) {
+            process.stdout.write(` summarization failed again, skipped
+`);
+            return false;
+          }
+          const updatedBody = updateTitleAndSummary(task.body, result.title, result.summary);
+          fs.writeFileSync(path.join(vaultDir, task.relativePath), task.frontmatterBlock + updatedBody);
+          indexNote(index, vaultDir, task.relativePath);
+          process.stdout.write(` \u2192 "${result.title}"
+`);
+          return true;
+        },
+        {
+          concurrency: LLM_BATCH_CONCURRENCY,
+          onProgress: (done, total) => {
+            if (done === total) console.log(`
+Summarization complete.`);
+          }
+        }
+      );
+      for (const r of summaryResult.results) {
+        if (r.status === "fulfilled" && r.value) summarized++;
+      }
+    }
+    console.log(`${summarized}/${tasks.length} sessions updated.`);
+  }
   if (vectorIndex && embedJobs.length > 0) {
     console.log(`Embedding ${embedJobs.length} notes (concurrency: ${EMBEDDING_BATCH_CONCURRENCY})...`);
     const embResult = await batchExecute(
@@ -189,11 +260,11 @@ Extraction complete: ${done} sessions processed.`);
     }
   }
   console.log(`
-Done: ${tasks.length} sessions reprocessed, ${totalObservations} observations extracted.`);
+Done: ${tasks.length} sessions reprocessed, ${totalObservations} observations extracted, ${summarized} summaries regenerated.`);
   index.close();
   vectorIndex?.close();
 }
 export {
   run
 };
-//# sourceMappingURL=reprocess-7G7KQWCN.js.map
+//# sourceMappingURL=reprocess-ZL4HKTSC.js.map

package/dist/reprocess-ZL4HKTSC.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/cli/reprocess.ts"],"sourcesContent":["/**\n * myco reprocess — re-run the observation extraction and summarization pipeline\n * for existing sessions. Useful after bugs or when the LLM backend changes.\n *\n * Reads transcripts (the source of truth), re-extracts observations, regenerates\n * summaries/titles, and re-indexes everything. Existing spore files from those\n * sessions are preserved — new observations are additive.\n *\n * Flags:\n *   --session <id>   Filter to sessions matching this substring\n *   --date <YYYY-MM-DD>  Filter to sessions from a specific date\n *   --failed         Only reprocess sessions with failed summaries\n *   --index-only     Skip all LLM calls (re-index only)\n */\nimport fs from 'node:fs';\nimport path from 'node:path';\nimport { MycoIndex } from '../index/sqlite.js';\nimport { VectorIndex } from '../index/vectors.js';\nimport { initFts } from '../index/fts.js';\nimport { indexNote } from '../index/rebuild.js';\nimport { loadConfig } from '../config/loader.js';\nimport { createLlmProvider, createEmbeddingProvider } from '../intelligence/llm.js';\nimport { generateEmbedding } from '../intelligence/embeddings.js';\nimport { batchExecute, LLM_BATCH_CONCURRENCY, EMBEDDING_BATCH_CONCURRENCY } from '../intelligence/batch.js';\nimport { BufferProcessor, SUMMARIZATION_FAILED_MARKER } from '../daemon/processor.js';\nimport { TranscriptMiner } from '../capture/transcript-miner.js';\nimport { VaultWriter } from '../vault/writer.js';\nimport { writeObservationNotes } from '../vault/observations.js';\nimport { createPerProjectAdapter } from '../agents/adapter.js';\nimport { claudeCodeAdapter } from '../agents/claude-code.js';\nimport { sessionNoteId, bareSessionId } from '../vault/session-id.js';\nimport { EMBEDDING_INPUT_LIMIT } from '../constants.js';\nimport { callout, extractSection } from '../obsidian/formatter.js';\nimport { parseStringFlag } from './shared.js';\nimport matter from 'gray-matter';\n\n\ninterface EmbedJob {\n  id: string;\n  text: string;\n  metadata: Record<string, string>;\n}\n\ninterface SessionTask {\n  relativePath: string;\n  sessionId: string;\n  bare: string;\n  frontmatter: Record<string, unknown>;\n  /** Raw frontmatter block (---\\n...\\n---) preserved verbatim to avoid YAML re-serialization bugs. */\n  frontmatterBlock: string;\n  /** Session note body after frontmatter. */\n  body: string;\n  conversationSection: string;\n  batchEvents: Array<Record<string, unknown>> | null;\n  turnCount: number;\n  hasFailed: boolean;\n}\n\n/** Section heading for conversation content in session notes. */\nconst CONVERSATION_HEADING = '## Conversation';\n\n/**\n * Replace the title (first `# ` line) and summary callout in a session note body.\n */\nfunction updateTitleAndSummary(body: string, newTitle: string, newNarrative: string): string {\n  // Replace the title line (first occurrence of `# ...`)\n  let updated = body.replace(/^# .*/m, `# ${newTitle}`);\n\n  // Replace the summary callout block: from `> [!abstract]` through consecutive `> ` lines\n  const summaryCallout = callout('abstract', 'Summary', newNarrative);\n  updated = updated.replace(/> \\[!abstract\\] Summary\\n(?:> .*\\n?)*/m, summaryCallout + '\\n');\n\n  return updated;\n}\n\nexport async function run(args: string[], vaultDir: string): Promise<void> {\n  const sessionFilter = parseStringFlag(args, '--session');\n  const dateFilter = parseStringFlag(args, '--date');\n  const failedOnly = args.includes('--failed');\n  const skipLlm = args.includes('--index-only');\n\n  const config = loadConfig(vaultDir);\n  const index = new MycoIndex(path.join(vaultDir, 'index.db'));\n  initFts(index);\n\n  const llmProvider = skipLlm ? null : createLlmProvider(config.intelligence.llm);\n  const embeddingProvider = createEmbeddingProvider(config.intelligence.embedding);\n\n  let vectorIndex: VectorIndex | null = null;\n  try {\n    const testEmbed = await embeddingProvider.embed('test');\n    vectorIndex = new VectorIndex(path.join(vaultDir, 'vectors.db'), testEmbed.dimensions);\n  } catch (e) {\n    console.log(`Vector index unavailable: ${(e as Error).message}`);\n  }\n\n  const processor = llmProvider\n    ? new BufferProcessor(llmProvider, config.intelligence.llm.context_window, config.capture)\n    : null;\n  const writer = new VaultWriter(vaultDir);\n  const miner = new TranscriptMiner({\n    additionalAdapters: config.capture.transcript_paths.map((p: string) =>\n      createPerProjectAdapter(p, claudeCodeAdapter.parseTurns),\n    ),\n  });\n\n  // Find sessions to reprocess\n  const sessionsDir = path.join(vaultDir, 'sessions');\n  if (!fs.existsSync(sessionsDir)) {\n    console.log('No sessions directory found.');\n    index.close();\n    vectorIndex?.close();\n    return;\n  }\n\n  const sessionFiles: Array<{ relativePath: string; sessionId: string }> = [];\n  for (const dateDir of fs.readdirSync(sessionsDir)) {\n    if (dateFilter && dateDir !== dateFilter) continue;\n    const datePath = path.join(sessionsDir, dateDir);\n    if (!fs.statSync(datePath).isDirectory()) continue;\n    for (const file of fs.readdirSync(datePath)) {\n      if (!file.startsWith('session-') || !file.endsWith('.md')) continue;\n      const sessionId = file.replace('session-', '').replace('.md', '');\n      if (sessionFilter && !sessionId.includes(sessionFilter)) continue;\n      sessionFiles.push({\n        relativePath: path.join('sessions', dateDir, file),\n        sessionId,\n      });\n    }\n  }\n\n  if (sessionFiles.length === 0) {\n    const filters = [sessionFilter && `session=\"${sessionFilter}\"`, dateFilter && `date=\"${dateFilter}\"`].filter(Boolean);\n    console.log(filters.length ? `No sessions matching ${filters.join(', ')} found.` : 'No sessions found.');\n    index.close();\n    vectorIndex?.close();\n    return;\n  }\n\n  // Prepare tasks: read transcripts and session content, build extraction inputs.\n  // When --failed is set, check the marker before building expensive task fields.\n  let tasks: SessionTask[] = [];\n  for (const { relativePath, sessionId } of sessionFiles) {\n    const rawContent = fs.readFileSync(path.join(vaultDir, relativePath), 'utf-8');\n    const { data: frontmatter, content: body } = matter(rawContent);\n    const hasFailed = body.includes(SUMMARIZATION_FAILED_MARKER);\n\n    // Early skip: when --failed is set, don't build task for sessions that succeeded\n    if (failedOnly && !hasFailed) continue;\n\n    const bare = bareSessionId(sessionId);\n    const turnsResult = miner.getAllTurnsWithSource(bare);\n    const conversationSection = extractSection(body, CONVERSATION_HEADING);\n\n    // Preserve raw frontmatter block verbatim (matter.stringify corrupts YAML values)\n    const fmEnd = rawContent.indexOf('---', 4);\n    const frontmatterBlock = rawContent.slice(0, fmEnd + 3);\n\n    const batchEvents = turnsResult && turnsResult.turns.length > 0\n      ? turnsResult.turns.map((t) => ({\n          type: 'turn' as const,\n          prompt: t.prompt,\n          tool_count: t.toolCount,\n          response: t.aiResponse ?? '',\n          timestamp: t.timestamp,\n        }))\n      : null;\n\n    tasks.push({ relativePath, sessionId, bare, frontmatter, frontmatterBlock, body, conversationSection, batchEvents, turnCount: turnsResult?.turns.length ?? 0, hasFailed });\n  }\n\n  if (failedOnly) {\n    console.log(`Found ${tasks.length} failed session(s) out of ${sessionFiles.length} checked.\\n`);\n  }\n\n  if (tasks.length === 0) {\n    const filters = [sessionFilter && `session=\"${sessionFilter}\"`, dateFilter && `date=\"${dateFilter}\"`, failedOnly && 'failed'].filter(Boolean);\n    console.log(filters.length ? `No sessions matching ${filters.join(', ')} found.` : 'No sessions found.');\n    index.close();\n    vectorIndex?.close();\n    return;\n  }\n\n  console.log(`Reprocessing ${tasks.length} session(s)...\\n`);\n\n  // Phase 1: LLM extraction (concurrency-limited) + FTS re-indexing\n  const embedJobs: EmbedJob[] = [];\n  let totalObservations = 0;\n\n  const extractionResult = await batchExecute(\n    tasks,\n    async (task) => {\n      let obs = 0;\n      process.stdout.write(`  ${task.sessionId.slice(0, 12)}... ${task.turnCount} turns`);\n\n      if (processor && task.batchEvents) {\n        const result = await processor.process(task.batchEvents, task.bare);\n        if (result.observations.length > 0) {\n          writeObservationNotes(result.observations, task.bare, writer, index, vaultDir);\n          obs = result.observations.length;\n          process.stdout.write(` → ${obs} observations`);\n\n          for (const o of result.observations) {\n            embedJobs.push({\n              id: `${o.type}-${task.bare.slice(-6)}-${Date.now()}`,\n              text: `${o.title}\\n${o.content}`.slice(0, EMBEDDING_INPUT_LIMIT),\n              metadata: { type: 'spore', session_id: task.bare },\n            });\n          }\n        }\n      }\n\n      // FTS re-index (fast, no LLM)\n      indexNote(index, vaultDir, task.relativePath);\n\n      // Queue session embedding\n      const embText = `${task.frontmatter.title ?? ''}\\n${task.frontmatter.summary ?? ''}`.slice(0, EMBEDDING_INPUT_LIMIT);\n      if (embText.trim()) {\n        embedJobs.push({\n          id: sessionNoteId(task.bare),\n          text: embText,\n          metadata: { type: 'session', session_id: task.bare },\n        });\n      }\n\n      process.stdout.write('\\n');\n      return obs;\n    },\n    {\n      concurrency: LLM_BATCH_CONCURRENCY,\n      onProgress: (done, total) => {\n        if (done === total) console.log(`\\nExtraction complete: ${done} sessions processed.`);\n      },\n    },\n  );\n\n  for (const r of extractionResult.results) {\n    if (r.status === 'fulfilled') totalObservations += r.value;\n  }\n\n  // Phase 2: Resummarize sessions (concurrency-limited, consistent with Phase 1)\n  let summarized = 0;\n  if (processor) {\n    const summarizableTasks = tasks.filter((t) => t.conversationSection);\n    if (summarizableTasks.length > 0) {\n      console.log(`\\nRegenerating summaries...`);\n\n      const summaryResult = await batchExecute(\n        summarizableTasks,\n        async (task) => {\n          process.stdout.write(`  ${task.sessionId.slice(0, 12)}...`);\n          const user = typeof task.frontmatter.user === 'string' ? task.frontmatter.user : undefined;\n          const result = await processor.summarizeSession(task.conversationSection, task.bare, user);\n\n          if (result.summary.includes(SUMMARIZATION_FAILED_MARKER)) {\n            process.stdout.write(` summarization failed again, skipped\\n`);\n            return false;\n          }\n\n          const updatedBody = updateTitleAndSummary(task.body, result.title, result.summary);\n          fs.writeFileSync(path.join(vaultDir, task.relativePath), task.frontmatterBlock + updatedBody);\n          indexNote(index, vaultDir, task.relativePath);\n          process.stdout.write(` → \"${result.title}\"\\n`);\n          return true;\n        },\n        {\n          concurrency: LLM_BATCH_CONCURRENCY,\n          onProgress: (done, total) => {\n            if (done === total) console.log(`\\nSummarization complete.`);\n          },\n        },\n      );\n\n      for (const r of summaryResult.results) {\n        if (r.status === 'fulfilled' && r.value) summarized++;\n      }\n    }\n\n    console.log(`${summarized}/${tasks.length} sessions updated.`);\n  }\n\n  // Phase 3: Parallel embeddings\n  if (vectorIndex && embedJobs.length > 0) {\n    console.log(`Embedding ${embedJobs.length} notes (concurrency: ${EMBEDDING_BATCH_CONCURRENCY})...`);\n\n    const embResult = await batchExecute(\n      embedJobs,\n      async (job) => {\n        const emb = await generateEmbedding(embeddingProvider, job.text);\n        vectorIndex!.upsert(job.id, emb.embedding, job.metadata);\n      },\n      {\n        concurrency: EMBEDDING_BATCH_CONCURRENCY,\n        onProgress: (done, total) => process.stdout.write(`\\r  Embedded ${done}/${total}`),\n      },\n    );\n\n    process.stdout.write('\\n');\n    if (embResult.failed > 0) {\n      console.log(`  ${embResult.failed} embedding(s) failed.`);\n    }\n  }\n\n  console.log(`\\nDone: ${tasks.length} sessions reprocessed, ${totalObservations} observations extracted, ${summarized} summaries regenerated.`);\n\n  index.close();\n  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package/dist/{restart-ABW4ZK3P.js → restart-FYW662DR.js}

@@ -1,11 +1,11 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   isProcessAlive
-} from "./chunk-GFBG73P4.js";
+} from "./chunk-FIRMTYFH.js";
 import "./chunk-SAKJMNSR.js";
-import "./chunk-67R6EMYD.js";
-import "./chunk-BNIYWCST.js";
-import "./chunk-JBD5KP5G.js";
+import "./chunk-JI6M2L2W.js";
+import "./chunk-X6TKHO22.js";
+import "./chunk-B6WVNDA5.js";
 import "./chunk-PZUWP5VK.js";
 
 // src/cli/restart.ts
@@ -29,7 +29,7 @@ async function run(_args, vaultDir) {
     } catch {
     }
   }
-  const { DaemonClient } = await import("./client-5SUO2UYH.js");
+  const { DaemonClient } = await import("./client-5GB4WVXE.js");
   const client = new DaemonClient(vaultDir);
   console.log("Waiting for health check...");
   const healthy = await client.ensureRunning();
@@ -47,4 +47,4 @@ async function run(_args, vaultDir) {
 export {
   run
 };
-//# sourceMappingURL=restart-ABW4ZK3P.js.map
+//# sourceMappingURL=restart-FYW662DR.js.map

package/dist/{search-MPD7SFK6.js → search-E5JQMTXV.js}

@@ -2,24 +2,24 @@ import { createRequire as __cr } from 'node:module'; const require = __cr(import
 import {
   generateEmbedding
 } from "./chunk-RGVBGTD6.js";
-import {
-  createEmbeddingProvider
-} from "./chunk-IYFKPSRP.js";
 import {
   VectorIndex
 } from "./chunk-XQXXF6MU.js";
+import {
+  createEmbeddingProvider
+} from "./chunk-RCV2I4AI.js";
 import {
   searchFts
 } from "./chunk-6FQISQNA.js";
 import {
   MycoIndex
 } from "./chunk-AK6GNLPV.js";
-import "./chunk-67R6EMYD.js";
+import "./chunk-JI6M2L2W.js";
 import {
   loadConfig
 } from "./chunk-TBRZAJ7W.js";
 import "./chunk-6UJWI4IW.js";
-import "./chunk-JBD5KP5G.js";
+import "./chunk-B6WVNDA5.js";
 import "./chunk-PZUWP5VK.js";
 
 // src/cli/search.ts
@@ -117,4 +117,4 @@ export {
   run,
   runVectors
 };
-//# sourceMappingURL=search-MPD7SFK6.js.map
+//# sourceMappingURL=search-E5JQMTXV.js.map

package/dist/{server-NZLZRITH.js → server-TV3D35HZ.js}

@@ -4,25 +4,32 @@ import {
 } from "./chunk-BMJX2IDQ.js";
 import {
   handleMycoContext
-} from "./chunk-WBT5DWGC.js";
-import "./chunk-5EZ7QF6J.js";
+} from "./chunk-IURC35BF.js";
 import {
   VaultWriter
-} from "./chunk-I7PNZEBO.js";
+} from "./chunk-6LTNFMXO.js";
+import "./chunk-5EZ7QF6J.js";
+import {
+  checkSupersession
+} from "./chunk-FIA5NTRH.js";
 import {
-  OBSERVATION_TYPES,
-  PLAN_STATUSES,
   indexNote
-} from "./chunk-FPEDTLQ6.js";
+} from "./chunk-JJL6AMDA.js";
 import {
   generateEmbedding
 } from "./chunk-RGVBGTD6.js";
-import {
-  createEmbeddingProvider
-} from "./chunk-IYFKPSRP.js";
 import {
   VectorIndex
 } from "./chunk-XQXXF6MU.js";
+import "./chunk-KYL67SKZ.js";
+import {
+  OBSERVATION_TYPES,
+  PLAN_STATUSES
+} from "./chunk-2AMAOSRF.js";
+import {
+  createEmbeddingProvider,
+  createLlmProvider
+} from "./chunk-RCV2I4AI.js";
 import {
   planFm,
   sessionFm,
@@ -35,7 +42,7 @@ import {
 import {
   MycoIndex
 } from "./chunk-AK6GNLPV.js";
-import "./chunk-67R6EMYD.js";
+import "./chunk-JI6M2L2W.js";
 import {
   loadConfig
 } from "./chunk-TBRZAJ7W.js";
@@ -65,11 +72,11 @@ import {
 } from "./chunk-HIN3UVOG.js";
 import {
   getPluginVersion
-} from "./chunk-2GJFTIWX.js";
+} from "./chunk-7KQB22DP.js";
 import {
   resolveVaultDir
 } from "./chunk-N33KUCFP.js";
-import "./chunk-BNIYWCST.js";
+import "./chunk-X6TKHO22.js";
 import {
   CONTENT_SNIPPET_CHARS,
   EMBEDDING_INPUT_LIMIT,
@@ -78,7 +85,7 @@ import {
   MCP_SESSIONS_DEFAULT_LIMIT,
   RECALL_SUMMARY_PREVIEW_CHARS,
   SESSION_SUMMARY_PREVIEW_CHARS
-} from "./chunk-JBD5KP5G.js";
+} from "./chunk-B6WVNDA5.js";
 import {
   __commonJS,
   __toESM
@@ -14691,6 +14698,16 @@ function createMycoServer(config2) {
       case TOOL_REMEMBER: {
         const result = await handleMycoRemember(config2.vaultDir, idx, input);
         embedNote(result.id, String(input.content), { type: "spore", observation_type: String(input.type ?? ""), importance: "high" });
+        if (config2.vectorIndex && config2.embeddingProvider && config2.llmProvider) {
+          checkSupersession(result.id, {
+            index: idx,
+            vectorIndex: config2.vectorIndex,
+            embeddingProvider: config2.embeddingProvider,
+            llmProvider: config2.llmProvider,
+            vaultDir: config2.vaultDir
+          }).catch(() => {
+          });
+        }
         logActivity(TOOL_REMEMBER, { id: result.id, observation_type: input.type, path: result.note_path });
         return { content: [{ type: "text", text: JSON.stringify(result) }] };
       }
@@ -14749,6 +14766,7 @@ async function main() {
   const config2 = fs3.existsSync(path5.join(vaultDir, "myco.yaml")) ? loadConfig(vaultDir) : void 0;
   let embeddingProvider;
   let vectorIndex;
+  let llmProvider;
   if (config2) {
     try {
       embeddingProvider = createEmbeddingProvider(config2.intelligence.embedding);
@@ -14756,12 +14774,17 @@ async function main() {
       vectorIndex = new VectorIndex(path5.join(vaultDir, "vectors.db"), testEmbed.dimensions);
     } catch {
     }
+    try {
+      llmProvider = createLlmProvider(config2.intelligence.llm);
+    } catch {
+    }
   }
   const server = createMycoServer({
     vaultDir,
     teamUser: config2?.team?.user,
     embeddingProvider,
-    vectorIndex
+    vectorIndex,
+    llmProvider
   });
   await server.start();
 }
@@ -14769,4 +14792,4 @@ export {
   createMycoServer,
   main
 };
-//# sourceMappingURL=server-NZLZRITH.js.map
+//# sourceMappingURL=server-TV3D35HZ.js.map