@goondocks/myco 0.3.7 → 0.4.1

package/dist/{chunk-LR7RQCOB.js → chunk-XCPQHC4X.js}

@@ -1,7 +1,7 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   AgentRegistry
-} from "./chunk-JKOALBZC.js";
+} from "./chunk-BNIYWCST.js";
 
 // src/native-deps.ts
 import { execFileSync } from "child_process";
@@ -53,4 +53,4 @@ function ensureNativeDeps() {
 export {
   ensureNativeDeps
 };
-//# sourceMappingURL=chunk-LR7RQCOB.js.map
+//# sourceMappingURL=chunk-XCPQHC4X.js.map

package/dist/{chunk-CCIV47S4.js → chunk-XHWIIU5D.js}

@@ -2,10 +2,10 @@ import { createRequire as __cr } from 'node:module'; const require = __cr(import
 import {
   LmStudioBackend,
   OllamaBackend
-} from "./chunk-BA23DROX.js";
+} from "./chunk-P7RNAYU7.js";
 import {
   AgentRegistry
-} from "./chunk-JKOALBZC.js";
+} from "./chunk-BNIYWCST.js";
 
 // src/cli/shared.ts
 import fs from "fs";
@@ -48,22 +48,22 @@ TABLE user, started, tools_used FROM #type/session
 SORT started DESC LIMIT 10
 \`\`\`
 
-## Recent Memories
+## Recent Spores
 \`\`\`dataview
-TABLE observation_type AS "Type", created FROM #type/memory
+TABLE observation_type AS "Type", created FROM #type/spore
 SORT created DESC LIMIT 15
 \`\`\`
 
-## Memories by Type
+## Spores by Type
 \`\`\`dataview
 TABLE WITHOUT ID observation_type AS "Type", length(rows) AS "Count"
-FROM #type/memory GROUP BY observation_type
+FROM #type/spore GROUP BY observation_type
 SORT length(rows) DESC
 \`\`\`
 
 ## Gotchas
 \`\`\`dataview
-LIST FROM #memory/gotcha SORT created DESC LIMIT 10
+LIST FROM #spore/gotcha SORT created DESC LIMIT 10
 \`\`\`
 `;
 var VAULT_GITIGNORE = `# Runtime \u2014 rebuilt on daemon startup
@@ -112,9 +112,8 @@ For other agents, add to your shell profile:`);
 export {
   loadEnv,
   isProcessAlive,
-  PROVIDER_DEFAULTS,
   DASHBOARD_CONTENT,
   VAULT_GITIGNORE,
   configureVaultEnv
 };
-//# sourceMappingURL=chunk-CCIV47S4.js.map
+//# sourceMappingURL=chunk-XHWIIU5D.js.map

package/dist/chunk-XHWIIU5D.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/cli/shared.ts"],"sourcesContent":["import fs from 'node:fs';\nimport path from 'node:path';\nimport os from 'node:os';\nimport { AgentRegistry } from '../agents/registry.js';\nimport { OllamaBackend } from '../intelligence/ollama.js';\nimport { LmStudioBackend } from '../intelligence/lm-studio.js';\n\nexport { parseStringFlag, parseIntFlag } from '../logs/format.js';\n\n/** Load .env from cwd (not script location — that's the plugin install dir). */\nexport function loadEnv(): void {\n  const envPath = path.resolve(process.cwd(), '.env');\n  if (!fs.existsSync(envPath)) return;\n  for (const line of fs.readFileSync(envPath, 'utf-8').split('\\n')) {\n    const match = line.match(/^\\s*([^#=]+?)\\s*=\\s*(.*?)\\s*$/);\n    if (match && !process.env[match[1]]) {\n      process.env[match[1]] = match[2];\n    }\n  }\n}\n\nexport function isProcessAlive(pid: number): boolean {\n  try { process.kill(pid, 0); return true; } catch { return false; }\n}\n\n// --- Provider defaults (sourced from backend classes) ---\nexport const PROVIDER_DEFAULTS: Record<string, { base_url: string }> = {\n  ollama: { base_url: OllamaBackend.DEFAULT_BASE_URL },\n  'lm-studio': { base_url: LmStudioBackend.DEFAULT_BASE_URL },\n};\n\nexport const DASHBOARD_CONTENT = `# Myco Vault\n\n## Active Plans\n\\`\\`\\`dataview\nTABLE status, tags FROM #type/plan\nWHERE status = \"active\" OR status = \"in_progress\"\nSORT created DESC\n\\`\\`\\`\n\n## Recent Sessions\n\\`\\`\\`dataview\nTABLE user, started, tools_used FROM #type/session\nSORT started DESC LIMIT 10\n\\`\\`\\`\n\n## Recent Spores\n\\`\\`\\`dataview\nTABLE observation_type AS \"Type\", created FROM #type/spore\nSORT created DESC LIMIT 15\n\\`\\`\\`\n\n## Spores by Type\n\\`\\`\\`dataview\nTABLE WITHOUT ID observation_type AS \"Type\", length(rows) AS \"Count\"\nFROM #type/spore GROUP BY observation_type\nSORT length(rows) DESC\n\\`\\`\\`\n\n## Gotchas\n\\`\\`\\`dataview\nLIST FROM #spore/gotcha SORT created DESC LIMIT 10\n\\`\\`\\`\n`;\n\nexport const VAULT_GITIGNORE = `# Runtime — rebuilt on daemon startup\nindex.db\nindex.db-wal\nindex.db-shm\nvectors.db\n\n# Daemon state — per-machine, ephemeral\ndaemon.json\nbuffer/\nlogs/\n\n# Obsidian — per-user workspace config\n.obsidian/\n`;\n\n/** Collapse an absolute home-dir path to its `~/` form for portable config storage. */\nexport function collapseHomePath(absPath: string): string {\n  const home = os.homedir();\n  if (absPath.startsWith(home + path.sep) || absPath === home) {\n    return '~' + absPath.slice(home.length);\n  }\n  return absPath;\n}\n\n/** Set MYCO_VAULT_DIR in the active agent's config, falling back to all known agents. */\nexport function configureVaultEnv(projectRoot: string, vaultDir: string): void {\n  const registry = new AgentRegistry();\n  const active = registry.detectActiveAgent();\n  // Store the portable ~/... form so config files don't leak the username\n  const portableDir = collapseHomePath(vaultDir);\n\n  if (active) {\n    if (active.configureVaultEnv(projectRoot, portableDir)) {\n      console.log(`Set MYCO_VAULT_DIR for ${active.displayName}`);\n    }\n  } else {\n    // No active agent detected — try all adapters\n    for (const name of registry.adapterNames) {\n      const adapter = registry.getAdapter(name);\n      if (adapter?.configureVaultEnv(projectRoot, portableDir)) {\n        console.log(`Set MYCO_VAULT_DIR for ${adapter.displayName}`);\n      }\n    }\n  }\n\n  console.log(`\\nFor other agents, add to your shell profile:`);\n  console.log(`  export 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package/dist/{chunk-ZBNT6E22.js → chunk-ZCBL5HER.js}

@@ -1,7 +1,7 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   STDIN_TIMEOUT_MS
-} from "./chunk-7VPJK56U.js";
+} from "./chunk-JBD5KP5G.js";
 
 // src/hooks/read-stdin.ts
 function readStdin() {
@@ -18,4 +18,4 @@ function readStdin() {
 export {
   readStdin
 };
-//# sourceMappingURL=chunk-ZBNT6E22.js.map
+//# sourceMappingURL=chunk-ZCBL5HER.js.map

package/dist/{cli-3WQSDSW6.js → cli-IGZA3TZC.js}

@@ -2,14 +2,14 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   loadEnv
-} from "./chunk-CCIV47S4.js";
+} from "./chunk-XHWIIU5D.js";
 import "./chunk-SAKJMNSR.js";
-import "./chunk-BA23DROX.js";
+import "./chunk-P7RNAYU7.js";
 import {
   resolveVaultDir
 } from "./chunk-N33KUCFP.js";
-import "./chunk-JKOALBZC.js";
-import "./chunk-7VPJK56U.js";
+import "./chunk-BNIYWCST.js";
+import "./chunk-JBD5KP5G.js";
 import "./chunk-PZUWP5VK.js";
 
 // src/cli.ts
@@ -28,6 +28,8 @@ Commands:
   vectors <query>          Raw vector search with similarity scores
   session [id|latest]      Show a session note
   logs [options]           View daemon logs
+  setup-llm [options]      Configure LLM and embedding providers
+  setup-digest [options]   Configure digest and capture settings
   restart                  Restart the daemon
   rebuild                  Reindex the entire vault
   reprocess [options]      Re-extract observations and re-index sessions
@@ -39,10 +41,10 @@ async function main() {
     process.stdout.write(USAGE);
     return;
   }
-  if (cmd === "init") return (await import("./init-RALMQKOQ.js")).run(args);
-  if (cmd === "detect-providers") return (await import("./detect-providers-LNOLBICR.js")).run(args);
+  if (cmd === "init") return (await import("./init-M3GDZRKI.js")).run(args);
+  if (cmd === "detect-providers") return (await import("./detect-providers-5FU3BN5Q.js")).run(args);
   if (cmd === "version" || cmd === "--version" || cmd === "-v") {
-    const { getPluginVersion } = await import("./version-S7MHLD5P.js");
+    const { getPluginVersion } = await import("./version-5B2TWXQJ.js");
     console.log(getPluginVersion());
     return;
   }
@@ -53,23 +55,27 @@ async function main() {
   }
   switch (cmd) {
     case "config":
-      return (await import("./config-MD4XMLUS.js")).run(args, vaultDir);
+      return (await import("./config-5FGLQGCW.js")).run(args, vaultDir);
     case "verify":
-      return (await import("./verify-7MWOV72E.js")).run(args, vaultDir);
+      return (await import("./verify-WEGRM4W2.js")).run(args, vaultDir);
     case "stats":
-      return (await import("./stats-IOWXG576.js")).run(args, vaultDir);
+      return (await import("./stats-IVIXIKTS.js")).run(args, vaultDir);
     case "search":
-      return (await import("./search-2HMG3ON7.js")).run(args, vaultDir);
+      return (await import("./search-IYVMRZU2.js")).run(args, vaultDir);
     case "vectors":
-      return (await import("./search-2HMG3ON7.js")).runVectors(args, vaultDir);
+      return (await import("./search-IYVMRZU2.js")).runVectors(args, vaultDir);
     case "session":
-      return (await import("./session-5GI2YU6R.js")).run(args, vaultDir);
+      return (await import("./session-QF6MILAC.js")).run(args, vaultDir);
+    case "setup-llm":
+      return (await import("./setup-llm-UGZBURZJ.js")).run(args, vaultDir);
+    case "setup-digest":
+      return (await import("./setup-digest-6TK5SPS6.js")).run(args, vaultDir);
     case "restart":
-      return (await import("./restart-YE2IGOYT.js")).run(args, vaultDir);
+      return (await import("./restart-5UY2KV54.js")).run(args, vaultDir);
     case "rebuild":
-      return (await import("./rebuild-JW6BCHHZ.js")).run(args, vaultDir);
+      return (await import("./rebuild-MW4GCY6Z.js")).run(args, vaultDir);
     case "reprocess":
-      return (await import("./reprocess-SNXFNKBN.js")).run(args, vaultDir);
+      return (await import("./reprocess-SWRFIIDZ.js")).run(args, vaultDir);
     case "logs":
       return (await import("./logs-BSTBZHDR.js")).run(args, vaultDir);
     default:
@@ -82,4 +88,4 @@ main().catch((err) => {
   console.error(`myco: ${err.message}`);
   process.exit(1);
 });
-//# sourceMappingURL=cli-3WQSDSW6.js.map
+//# sourceMappingURL=cli-IGZA3TZC.js.map

package/dist/cli-IGZA3TZC.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/cli.ts"],"sourcesContent":["#!/usr/bin/env node\nimport { loadEnv } from './cli/shared.js';\nimport { resolveVaultDir } from './vault/resolve.js';\nimport fs from 'node:fs';\nimport path from 'node:path';\n\nloadEnv();\n\nconst USAGE = `Usage: myco <command> [args]\n\nCommands:\n  init [options]           Initialize a new vault\n  config <get|set> [args]  Get or set vault config values\n  detect-providers         Detect available LLM/embedding providers (JSON)\n  verify                   Test LLM and embedding connectivity\n  stats                    Vault health, index counts, vector count\n  search <query>           Combined FTS + vector search with scores\n  vectors <query>          Raw vector search with similarity scores\n  session [id|latest]      Show a session note\n  logs [options]           View daemon logs\n  setup-llm [options]      Configure LLM and embedding providers\n  setup-digest [options]   Configure digest and capture settings\n  restart                  Restart the daemon\n  rebuild                  Reindex the entire vault\n  reprocess [options]      Re-extract observations and re-index sessions\n  version                  Show plugin version\n`;\n\nasync function main(): Promise<void> {\n  const [cmd, ...args] = process.argv.slice(2);\n  if (!cmd || cmd === '--help' || cmd === '-h') {\n    process.stdout.write(USAGE);\n    return;\n  }\n\n  if (cmd === 'init') return (await import('./cli/init.js')).run(args);\n  if (cmd === 'detect-providers') return (await import('./cli/detect-providers.js')).run(args);\n  if (cmd === 'version' || cmd === '--version' || cmd === '-v') {\n    const { getPluginVersion } = await import('./version.js');\n    console.log(getPluginVersion());\n    return;\n  }\n\n  const vaultDir = resolveVaultDir();\n  if (!fs.existsSync(path.join(vaultDir, 'myco.yaml'))) {\n    console.error(`No myco.yaml found in ${vaultDir}. Run 'myco init' first.`);\n    process.exit(1);\n  }\n\n  switch (cmd) {\n    case 'config': return (await import('./cli/config.js')).run(args, vaultDir);\n    case 'verify': return (await import('./cli/verify.js')).run(args, vaultDir);\n    case 'stats': return (await import('./cli/stats.js')).run(args, vaultDir);\n    case 'search': return (await import('./cli/search.js')).run(args, vaultDir);\n    case 'vectors': return (await import('./cli/search.js')).runVectors(args, vaultDir);\n    case 'session': return (await import('./cli/session.js')).run(args, vaultDir);\n    case 'setup-llm': return (await import('./cli/setup-llm.js')).run(args, vaultDir);\n    case 'setup-digest': return (await import('./cli/setup-digest.js')).run(args, vaultDir);\n    case 'restart': return (await import('./cli/restart.js')).run(args, vaultDir);\n    case 'rebuild': return (await import('./cli/rebuild.js')).run(args, vaultDir);\n    case 'reprocess': return (await import('./cli/reprocess.js')).run(args, vaultDir);\n    case 'logs': return (await import('./cli/logs.js')).run(args, vaultDir);\n    default:\n      console.error(`Unknown command: ${cmd}`);\n      process.stdout.write(USAGE);\n      process.exit(1);\n  }\n}\n\nmain().catch((err) => {\n  console.error(`myco: ${(err as Error).message}`);\n  process.exit(1);\n});\n"],"mappings":";;;;;;;;;;;;;;;AAGA,OAAO,QAAQ;AACf,OAAO,UAAU;AAEjB,QAAQ;AAER,IAAM,QAAQ;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAoBd,eAAe,OAAsB;AACnC,QAAM,CAAC,KAAK,GAAG,IAAI,IAAI,QAAQ,KAAK,MAAM,CAAC;AAC3C,MAAI,CAAC,OAAO,QAAQ,YAAY,QAAQ,MAAM;AAC5C,YAAQ,OAAO,MAAM,KAAK;AAC1B;AAAA,EACF;AAEA,MAAI,QAAQ,OAAQ,SAAQ,MAAM,OAAO,oBAAe,GAAG,IAAI,IAAI;AACnE,MAAI,QAAQ,mBAAoB,SAAQ,MAAM,OAAO,gCAA2B,GAAG,IAAI,IAAI;AAC3F,MAAI,QAAQ,aAAa,QAAQ,eAAe,QAAQ,MAAM;AAC5D,UAAM,EAAE,iBAAiB,IAAI,MAAM,OAAO,uBAAc;AACxD,YAAQ,IAAI,iBAAiB,CAAC;AAC9B;AAAA,EACF;AAEA,QAAM,WAAW,gBAAgB;AACjC,MAAI,CAAC,GAAG,WAAW,KAAK,KAAK,UAAU,WAAW,CAAC,GAAG;AACpD,YAAQ,MAAM,yBAAyB,QAAQ,0BAA0B;AACzE,YAAQ,KAAK,CAAC;AAAA,EAChB;AAEA,UAAQ,KAAK;AAAA,IACX,KAAK;AAAU,cAAQ,MAAM,OAAO,sBAAiB,GAAG,IAAI,MAAM,QAAQ;AAAA,IAC1E,KAAK;AAAU,cAAQ,MAAM,OAAO,sBAAiB,GAAG,IAAI,MAAM,QAAQ;AAAA,IAC1E,KAAK;AAAS,cAAQ,MAAM,OAAO,qBAAgB,GAAG,IAAI,MAAM,QAAQ;AAAA,IACxE,KAAK;AAAU,cAAQ,MAAM,OAAO,sBAAiB,GAAG,IAAI,MAAM,QAAQ;AAAA,IAC1E,KAAK;AAAW,cAAQ,MAAM,OAAO,sBAAiB,GAAG,WAAW,MAAM,QAAQ;AAAA,IAClF,KAAK;AAAW,cAAQ,MAAM,OAAO,uBAAkB,GAAG,IAAI,MAAM,QAAQ;AAAA,IAC5E,KAAK;AAAa,cAAQ,MAAM,OAAO,yBAAoB,GAAG,IAAI,MAAM,QAAQ;AAAA,IAChF,KAAK;AAAgB,cAAQ,MAAM,OAAO,4BAAuB,GAAG,IAAI,MAAM,QAAQ;AAAA,IACtF,KAAK;AAAW,cAAQ,MAAM,OAAO,uBAAkB,GAAG,IAAI,MAAM,QAAQ;AAAA,IAC5E,KAAK;AAAW,cAAQ,MAAM,OAAO,uBAAkB,GAAG,IAAI,MAAM,QAAQ;AAAA,IAC5E,KAAK;AAAa,cAAQ,MAAM,OAAO,yBAAoB,GAAG,IAAI,MAAM,QAAQ;AAAA,IAChF,KAAK;AAAQ,cAAQ,MAAM,OAAO,oBAAe,GAAG,IAAI,MAAM,QAAQ;AAAA,IACtE;AACE,cAAQ,MAAM,oBAAoB,GAAG,EAAE;AACvC,cAAQ,OAAO,MAAM,KAAK;AAC1B,cAAQ,KAAK,CAAC;AAAA,EAClB;AACF;AAEA,KAAK,EAAE,MAAM,CAAC,QAAQ;AACpB,UAAQ,MAAM,SAAU,IAAc,OAAO,EAAE;AAC/C,UAAQ,KAAK,CAAC;AAChB,CAAC;","names":[]}

package/dist/{client-5T4M42UQ.js → client-5SUO2UYH.js}

@@ -1,12 +1,12 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   DaemonClient
-} from "./chunk-NYAWCMRZ.js";
-import "./chunk-YFG2O5HR.js";
-import "./chunk-JKOALBZC.js";
-import "./chunk-7VPJK56U.js";
+} from "./chunk-OUFSLZTX.js";
+import "./chunk-2GJFTIWX.js";
+import "./chunk-BNIYWCST.js";
+import "./chunk-JBD5KP5G.js";
 import "./chunk-PZUWP5VK.js";
 export {
   DaemonClient
 };
-//# sourceMappingURL=client-5T4M42UQ.js.map
+//# sourceMappingURL=client-5SUO2UYH.js.map

package/dist/{config-MD4XMLUS.js → config-5FGLQGCW.js}

@@ -1,11 +1,11 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
-  MycoConfigSchema,
   loadConfig
-} from "./chunk-ISCT2SI6.js";
+} from "./chunk-TBRZAJ7W.js";
 import {
+  MycoConfigSchema,
   require_dist
-} from "./chunk-EF4JVH24.js";
+} from "./chunk-6UJWI4IW.js";
 import {
   __toESM
 } from "./chunk-PZUWP5VK.js";
@@ -98,4 +98,4 @@ function parseValue(raw) {
 export {
   run
 };
-//# sourceMappingURL=config-MD4XMLUS.js.map
+//# sourceMappingURL=config-5FGLQGCW.js.map

package/dist/{detect-providers-LNOLBICR.js → detect-providers-5FU3BN5Q.js}

@@ -2,10 +2,10 @@ import { createRequire as __cr } from 'node:module'; const require = __cr(import
 import {
   LmStudioBackend,
   OllamaBackend
-} from "./chunk-BA23DROX.js";
+} from "./chunk-P7RNAYU7.js";
 import {
   PROVIDER_DETECT_TIMEOUT_MS
-} from "./chunk-7VPJK56U.js";
+} from "./chunk-JBD5KP5G.js";
 import "./chunk-PZUWP5VK.js";
 
 // src/cli/detect-providers.ts
@@ -32,4 +32,4 @@ async function run(_args) {
 export {
   run
 };
-//# sourceMappingURL=detect-providers-LNOLBICR.js.map
+//# sourceMappingURL=detect-providers-5FU3BN5Q.js.map

package/dist/{init-RALMQKOQ.js → init-M3GDZRKI.js}

@@ -1,28 +1,34 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
+import {
+  initFts
+} from "./chunk-6FQISQNA.js";
+import {
+  MycoIndex
+} from "./chunk-AK6GNLPV.js";
+import {
+  run
+} from "./chunk-T7OC6GH5.js";
+import {
+  run as run2
+} from "./chunk-UKWO26VI.js";
 import {
   DASHBOARD_CONTENT,
-  PROVIDER_DEFAULTS,
   VAULT_GITIGNORE,
   configureVaultEnv
-} from "./chunk-CCIV47S4.js";
+} from "./chunk-XHWIIU5D.js";
 import {
   parseStringFlag
 } from "./chunk-SAKJMNSR.js";
+import "./chunk-P7RNAYU7.js";
 import {
-  initFts
-} from "./chunk-6FQISQNA.js";
-import {
-  MycoIndex
-} from "./chunk-PA3VMINE.js";
-import "./chunk-BA23DROX.js";
-import {
+  MycoConfigSchema,
   require_dist
-} from "./chunk-EF4JVH24.js";
+} from "./chunk-6UJWI4IW.js";
 import {
   resolveVaultDir
 } from "./chunk-N33KUCFP.js";
-import "./chunk-JKOALBZC.js";
-import "./chunk-7VPJK56U.js";
+import "./chunk-BNIYWCST.js";
+import "./chunk-JBD5KP5G.js";
 import {
   __toESM
 } from "./chunk-PZUWP5VK.js";
@@ -32,14 +38,8 @@ var import_yaml = __toESM(require_dist(), 1);
 import fs from "fs";
 import path from "path";
 import os from "os";
-async function run(args) {
+async function run3(args) {
   const vaultPath = parseStringFlag(args, "--vault");
-  const llmProvider = parseStringFlag(args, "--llm-provider") ?? "ollama";
-  const llmModel = parseStringFlag(args, "--llm-model") ?? "gpt-oss";
-  const llmUrl = parseStringFlag(args, "--llm-url") ?? PROVIDER_DEFAULTS[llmProvider]?.base_url;
-  const embeddingProvider = parseStringFlag(args, "--embedding-provider") ?? "ollama";
-  const embeddingModel = parseStringFlag(args, "--embedding-model") ?? "bge-m3";
-  const embeddingUrl = parseStringFlag(args, "--embedding-url") ?? PROVIDER_DEFAULTS[embeddingProvider]?.base_url;
   const user = parseStringFlag(args, "--user") ?? "";
   const teamEnabled = args.includes("--team");
   const vaultDir = vaultPath ? vaultPath.startsWith("~/") ? path.join(os.homedir(), vaultPath.slice(2)) : path.resolve(vaultPath) : path.join(resolveVaultDir());
@@ -48,47 +48,14 @@ async function run(args) {
     return;
   }
   console.log(`Initializing Myco vault at ${vaultDir}`);
-  const dirs = ["sessions", "plans", "memories", "artifacts", "team", "buffer", "logs"];
+  const dirs = ["sessions", "plans", "spores", "artifacts", "team", "buffer", "logs"];
   for (const dir of dirs) {
     fs.mkdirSync(path.join(vaultDir, dir), { recursive: true });
   }
-  const config = {
+  const config = MycoConfigSchema.parse({
     version: 2,
-    intelligence: {
-      llm: {
-        provider: llmProvider,
-        model: llmModel,
-        ...llmUrl ? { base_url: llmUrl } : {},
-        context_window: 8192,
-        max_tokens: 1024
-      },
-      embedding: {
-        provider: embeddingProvider,
-        model: embeddingModel,
-        ...embeddingUrl ? { base_url: embeddingUrl } : {}
-      }
-    },
-    daemon: {
-      log_level: "info",
-      grace_period: 30,
-      max_log_size: 5242880
-    },
-    capture: {
-      transcript_paths: [],
-      artifact_watch: [".claude/plans/", ".cursor/plans/"],
-      artifact_extensions: [".md"],
-      buffer_max_events: 500
-    },
-    context: {
-      max_tokens: 1200,
-      layers: { plans: 200, sessions: 500, memories: 300, team: 200 }
-    },
-    team: {
-      enabled: teamEnabled,
-      user,
-      sync: "git"
-    }
-  };
+    team: { user, enabled: teamEnabled }
+  });
   fs.writeFileSync(
     path.join(vaultDir, "myco.yaml"),
     import_yaml.default.stringify(config),
@@ -99,11 +66,35 @@ async function run(args) {
   const index = new MycoIndex(path.join(vaultDir, "index.db"));
   initFts(index);
   index.close();
+  const llmFlags = [];
+  const llmProvider = parseStringFlag(args, "--llm-provider");
+  const llmModel = parseStringFlag(args, "--llm-model");
+  const llmUrl = parseStringFlag(args, "--llm-url");
+  if (llmProvider) llmFlags.push("--llm-provider", llmProvider);
+  if (llmModel) llmFlags.push("--llm-model", llmModel);
+  if (llmUrl) llmFlags.push("--llm-url", llmUrl);
+  const embeddingProvider = parseStringFlag(args, "--embedding-provider");
+  const embeddingModel = parseStringFlag(args, "--embedding-model");
+  const embeddingUrl = parseStringFlag(args, "--embedding-url");
+  if (embeddingProvider) llmFlags.push("--embedding-provider", embeddingProvider);
+  if (embeddingModel) llmFlags.push("--embedding-model", embeddingModel);
+  if (embeddingUrl) llmFlags.push("--embedding-url", embeddingUrl);
+  if (llmFlags.length > 0) {
+    await run(llmFlags, vaultDir);
+  }
+  const digestFlags = [];
+  const tiers = parseStringFlag(args, "--tiers");
+  const injectTier = parseStringFlag(args, "--inject-tier");
+  const contextWindow = parseStringFlag(args, "--context-window");
+  if (tiers) digestFlags.push("--tiers", tiers);
+  if (injectTier) digestFlags.push("--inject-tier", injectTier);
+  if (contextWindow) digestFlags.push("--context-window", contextWindow);
+  if (digestFlags.length > 0) {
+    await run2(digestFlags, vaultDir);
+  }
   console.log("");
   console.log("=== Myco Vault Initialized ===");
   console.log(`Path:               ${vaultDir}`);
-  console.log(`LLM provider:       ${llmProvider} / ${llmModel}`);
-  console.log(`Embedding provider: ${embeddingProvider} / ${embeddingModel}`);
   console.log(`Team mode:          ${teamEnabled ? "enabled" : "disabled"}`);
   if (user) console.log(`User:               ${user}`);
   console.log("");
@@ -115,6 +106,6 @@ async function run(args) {
   console.log("Next: start a coding session \u2014 Myco will begin capturing automatically.");
 }
 export {
-  run
+  run3 as run
 };
-//# sourceMappingURL=init-RALMQKOQ.js.map
+//# sourceMappingURL=init-M3GDZRKI.js.map

package/dist/init-M3GDZRKI.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/cli/init.ts"],"sourcesContent":["import { MycoIndex } from '../index/sqlite.js';\nimport { initFts } from '../index/fts.js';\nimport { resolveVaultDir } from '../vault/resolve.js';\nimport {\n  parseStringFlag,\n  DASHBOARD_CONTENT,\n  VAULT_GITIGNORE,\n  configureVaultEnv,\n} from './shared.js';\nimport { MycoConfigSchema } from '../config/schema.js';\nimport { run as setupLlm } from './setup-llm.js';\nimport { run as setupDigest } from './setup-digest.js';\nimport fs from 'node:fs';\nimport path from 'node:path';\nimport os from 'node:os';\nimport YAML from 'yaml';\n\nexport async function run(args: string[]): Promise<void> {\n  const vaultPath = parseStringFlag(args, '--vault');\n  const user = parseStringFlag(args, '--user') ?? '';\n  const teamEnabled = args.includes('--team');\n\n  // Resolve vault directory\n  const vaultDir = vaultPath\n    ? (vaultPath.startsWith('~/') ? path.join(os.homedir(), vaultPath.slice(2)) : path.resolve(vaultPath))\n    : path.join(resolveVaultDir());\n\n  // Check if already initialized\n  if (fs.existsSync(path.join(vaultDir, 'myco.yaml'))) {\n    console.log(`Vault already initialized at ${vaultDir}`);\n    return;\n  }\n\n  console.log(`Initializing Myco vault at ${vaultDir}`);\n\n  // Create directory structure\n  const dirs = ['sessions', 'plans', 'spores', 'artifacts', 'team', 'buffer', 'logs'];\n  for (const dir of dirs) {\n    fs.mkdirSync(path.join(vaultDir, dir), { recursive: true });\n  }\n\n  // Write myco.yaml — only version is truly required, everything else has Zod defaults\n  const config = MycoConfigSchema.parse({\n    version: 2,\n    team: { user, enabled: teamEnabled },\n  });\n\n  fs.writeFileSync(\n    path.join(vaultDir, 'myco.yaml'),\n    YAML.stringify(config),\n    'utf-8',\n  );\n\n  // Write .gitignore\n  fs.writeFileSync(path.join(vaultDir, '.gitignore'), VAULT_GITIGNORE, 'utf-8');\n\n  // Write Obsidian dashboard\n  fs.writeFileSync(path.join(vaultDir, '_dashboard.md'), DASHBOARD_CONTENT, 'utf-8');\n\n  // Initialize FTS index\n  const index = new MycoIndex(path.join(vaultDir, 'index.db'));\n  initFts(index);\n  index.close();\n\n  // Apply LLM provider settings from flags (if any were passed)\n  const llmFlags: string[] = [];\n  const llmProvider = parseStringFlag(args, '--llm-provider');\n  const llmModel = parseStringFlag(args, '--llm-model');\n  const llmUrl = parseStringFlag(args, '--llm-url');\n  if (llmProvider) llmFlags.push('--llm-provider', llmProvider);\n  if (llmModel) llmFlags.push('--llm-model', llmModel);\n  if (llmUrl) llmFlags.push('--llm-url', llmUrl);\n  const embeddingProvider = parseStringFlag(args, '--embedding-provider');\n  const embeddingModel = parseStringFlag(args, '--embedding-model');\n  const embeddingUrl = parseStringFlag(args, '--embedding-url');\n  if (embeddingProvider) llmFlags.push('--embedding-provider', embeddingProvider);\n  if (embeddingModel) llmFlags.push('--embedding-model', embeddingModel);\n  if (embeddingUrl) llmFlags.push('--embedding-url', embeddingUrl);\n\n  if (llmFlags.length > 0) {\n    await setupLlm(llmFlags, vaultDir);\n  }\n\n  // Apply digest settings from flags (if any were passed)\n  const digestFlags: string[] = [];\n  const tiers = parseStringFlag(args, '--tiers');\n  const injectTier = parseStringFlag(args, '--inject-tier');\n  const contextWindow = parseStringFlag(args, '--context-window');\n  if (tiers) digestFlags.push('--tiers', tiers);\n  if (injectTier) digestFlags.push('--inject-tier', injectTier);\n  if (contextWindow) digestFlags.push('--context-window', contextWindow);\n\n  if (digestFlags.length > 0) {\n    await setupDigest(digestFlags, vaultDir);\n  }\n\n  // Summary\n  console.log('');\n  console.log('=== Myco Vault Initialized ===');\n  console.log(`Path:               ${vaultDir}`);\n  console.log(`Team mode:          ${teamEnabled ? 'enabled' : 'disabled'}`);\n  if (user) console.log(`User:               ${user}`);\n  console.log('');\n\n  // If vault is outside the project, configure MYCO_VAULT_DIR for the current agent\n  const projectRoot = path.resolve('.');\n  const isProjectLocal = vaultDir.startsWith(projectRoot);\n  if (!isProjectLocal) {\n    configureVaultEnv(projectRoot, vaultDir);\n  }\n\n  console.log('Next: start a coding session — Myco will begin capturing automatically.');\n}\n"],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAeA,kBAAiB;AAHjB,OAAO,QAAQ;AACf,OAAO,UAAU;AACjB,OAAO,QAAQ;AAGf,eAAsBA,KAAI,MAA+B;AACvD,QAAM,YAAY,gBAAgB,MAAM,SAAS;AACjD,QAAM,OAAO,gBAAgB,MAAM,QAAQ,KAAK;AAChD,QAAM,cAAc,KAAK,SAAS,QAAQ;AAG1C,QAAM,WAAW,YACZ,UAAU,WAAW,IAAI,IAAI,KAAK,KAAK,GAAG,QAAQ,GAAG,UAAU,MAAM,CAAC,CAAC,IAAI,KAAK,QAAQ,SAAS,IAClG,KAAK,KAAK,gBAAgB,CAAC;AAG/B,MAAI,GAAG,WAAW,KAAK,KAAK,UAAU,WAAW,CAAC,GAAG;AACnD,YAAQ,IAAI,gCAAgC,QAAQ,EAAE;AACtD;AAAA,EACF;AAEA,UAAQ,IAAI,8BAA8B,QAAQ,EAAE;AAGpD,QAAM,OAAO,CAAC,YAAY,SAAS,UAAU,aAAa,QAAQ,UAAU,MAAM;AAClF,aAAW,OAAO,MAAM;AACtB,OAAG,UAAU,KAAK,KAAK,UAAU,GAAG,GAAG,EAAE,WAAW,KAAK,CAAC;AAAA,EAC5D;AAGA,QAAM,SAAS,iBAAiB,MAAM;AAAA,IACpC,SAAS;AAAA,IACT,MAAM,EAAE,MAAM,SAAS,YAAY;AAAA,EACrC,CAAC;AAED,KAAG;AAAA,IACD,KAAK,KAAK,UAAU,WAAW;AAAA,IAC/B,YAAAC,QAAK,UAAU,MAAM;AAAA,IACrB;AAAA,EACF;AAGA,KAAG,cAAc,KAAK,KAAK,UAAU,YAAY,GAAG,iBAAiB,OAAO;AAG5E,KAAG,cAAc,KAAK,KAAK,UAAU,eAAe,GAAG,mBAAmB,OAAO;AAGjF,QAAM,QAAQ,IAAI,UAAU,KAAK,KAAK,UAAU,UAAU,CAAC;AAC3D,UAAQ,KAAK;AACb,QAAM,MAAM;AAGZ,QAAM,WAAqB,CAAC;AAC5B,QAAM,cAAc,gBAAgB,MAAM,gBAAgB;AAC1D,QAAM,WAAW,gBAAgB,MAAM,aAAa;AACpD,QAAM,SAAS,gBAAgB,MAAM,WAAW;AAChD,MAAI,YAAa,UAAS,KAAK,kBAAkB,WAAW;AAC5D,MAAI,SAAU,UAAS,KAAK,eAAe,QAAQ;AACnD,MAAI,OAAQ,UAAS,KAAK,aAAa,MAAM;AAC7C,QAAM,oBAAoB,gBAAgB,MAAM,sBAAsB;AACtE,QAAM,iBAAiB,gBAAgB,MAAM,mBAAmB;AAChE,QAAM,eAAe,gBAAgB,MAAM,iBAAiB;AAC5D,MAAI,kBAAmB,UAAS,KAAK,wBAAwB,iBAAiB;AAC9E,MAAI,eAAgB,UAAS,KAAK,qBAAqB,cAAc;AACrE,MAAI,aAAc,UAAS,KAAK,mBAAmB,YAAY;AAE/D,MAAI,SAAS,SAAS,GAAG;AACvB,UAAM,IAAS,UAAU,QAAQ;AAAA,EACnC;AAGA,QAAM,cAAwB,CAAC;AAC/B,QAAM,QAAQ,gBAAgB,MAAM,SAAS;AAC7C,QAAM,aAAa,gBAAgB,MAAM,eAAe;AACxD,QAAM,gBAAgB,gBAAgB,MAAM,kBAAkB;AAC9D,MAAI,MAAO,aAAY,KAAK,WAAW,KAAK;AAC5C,MAAI,WAAY,aAAY,KAAK,iBAAiB,UAAU;AAC5D,MAAI,cAAe,aAAY,KAAK,oBAAoB,aAAa;AAErE,MAAI,YAAY,SAAS,GAAG;AAC1B,UAAMD,KAAY,aAAa,QAAQ;AAAA,EACzC;AAGA,UAAQ,IAAI,EAAE;AACd,UAAQ,IAAI,gCAAgC;AAC5C,UAAQ,IAAI,uBAAuB,QAAQ,EAAE;AAC7C,UAAQ,IAAI,uBAAuB,cAAc,YAAY,UAAU,EAAE;AACzE,MAAI,KAAM,SAAQ,IAAI,uBAAuB,IAAI,EAAE;AACnD,UAAQ,IAAI,EAAE;AAGd,QAAM,cAAc,KAAK,QAAQ,GAAG;AACpC,QAAM,iBAAiB,SAAS,WAAW,WAAW;AACtD,MAAI,CAAC,gBAAgB;AACnB,sBAAkB,aAAa,QAAQ;AAAA,EACzC;AAEA,UAAQ,IAAI,8EAAyE;AACvF;","names":["run","YAML"]}