@goondocks/myco 0.3.7 → 0.4.0

package/dist/{chunk-QWU7QLZI.js → chunk-TZDDXRHG.js}

@@ -1,7 +1,7 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   require_dist
-} from "./chunk-EF4JVH24.js";
+} from "./chunk-G6ZMTQMJ.js";
 import {
   __toESM
 } from "./chunk-PZUWP5VK.js";
@@ -89,7 +89,7 @@ function formatSessionBody(input) {
   sections.push(fields.join("\n"));
   if (input.relatedMemories?.length) {
     const links = input.relatedMemories.map((m) => `- ${wikilink(m.id, m.title)}`);
-    sections.push(`## Related Memories
+    sections.push(`## Related Spores
 ${links.join("\n")}`);
   }
   if (input.turns.length > 0) {
@@ -124,7 +124,7 @@ ${turnLines.join("\n\n")}`);
   sections.push(footerTags(allTags));
   return sections.join("\n\n");
 }
-function formatMemoryBody(input) {
+function formatSporeBody(input) {
   const sections = [];
   const calloutType = observationCalloutType(input.observationType);
   const calloutTitle = capitalize(tagNormalize(input.observationType));
@@ -148,7 +148,7 @@ ${input.alternatives_rejected}`);
 ${input.gained}`);
   if (input.sacrificed) sections.push(`## Sacrificed
 ${input.sacrificed}`);
-  const allTags = buildTags("memory", input.observationType, input.tags ?? []);
+  const allTags = buildTags("spore", input.observationType, input.tags ?? []);
   sections.push(footerTags(allTags));
   return sections.join("\n\n");
 }
@@ -281,9 +281,9 @@ var VaultWriter = class {
     this.writeMarkdown(relativePath, frontmatter, body);
     return relativePath;
   }
-  writeMemory(input) {
+  writeSpore(input) {
     const normalizedType = input.observation_type.replace(/_/g, "-");
-    const relativePath = `memories/${normalizedType}/${input.id}.md`;
+    const relativePath = `spores/${normalizedType}/${input.id}.md`;
     const fullPath = path.join(this.vaultDir, relativePath);
     const now = (/* @__PURE__ */ new Date()).toISOString();
     let created = now;
@@ -297,14 +297,14 @@ var VaultWriter = class {
     } catch {
     }
     const frontmatter = {
-      type: "memory",
+      type: "spore",
       id: input.id,
       observation_type: input.observation_type,
       created
     };
     if (input.session) frontmatter.session = input.session;
     if (input.plan) frontmatter.plan = input.plan;
-    frontmatter.tags = buildTags("memory", input.observation_type, input.tags ?? []);
+    frontmatter.tags = buildTags("spore", input.observation_type, input.tags ?? []);
     this.writeMarkdown(relativePath, frontmatter, input.content);
     return relativePath;
   }
@@ -419,7 +419,7 @@ export {
   sessionWikilink,
   sessionRelativePath,
   formatSessionBody,
-  formatMemoryBody,
+  formatSporeBody,
   VaultWriter
 };
-//# sourceMappingURL=chunk-QWU7QLZI.js.map
+//# sourceMappingURL=chunk-TZDDXRHG.js.map

package/dist/chunk-TZDDXRHG.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/vault/session-id.ts","../src/obsidian/formatter.ts","../src/vault/writer.ts"],"sourcesContent":["/**\n * Session ID convention utilities.\n *\n * The runtime session ID is a bare UUID (e.g., \"abc123\").\n * The vault stores it with a \"session-\" prefix (e.g., \"session-abc123\").\n * These helpers convert between the two forms.\n */\nconst SESSION_PREFIX = 'session-';\n\n/** Convert a bare session ID to a vault note ID: \"abc123\" → \"session-abc123\" */\nexport function sessionNoteId(bareId: string): string {\n  if (bareId.startsWith(SESSION_PREFIX)) return bareId;\n  return `${SESSION_PREFIX}${bareId}`;\n}\n\n/** Convert a vault note ID to a bare session ID: \"session-abc123\" → \"abc123\" */\nexport function bareSessionId(noteId: string): string {\n  if (noteId.startsWith(SESSION_PREFIX)) return noteId.slice(SESSION_PREFIX.length);\n  return noteId;\n}\n\n/** Convert a bare session ID to an Obsidian wikilink: \"abc123\" → \"[[session-abc123]]\" */\nexport function sessionWikilink(bareId: string): string {\n  return `[[${sessionNoteId(bareId)}]]`;\n}\n\n/** Build the relative vault path for a session note */\nexport function sessionRelativePath(bareId: string, date: string): string {\n  return `sessions/${date}/${sessionNoteId(bareId)}.md`;\n}\n\n","/**\n * Pure formatting functions for Obsidian-native vault notes.\n * No I/O, no external dependencies — just string transforms.\n */\nimport type { ArtifactType } from '../vault/types.js';\nimport { sessionNoteId } from '../vault/session-id.js';\n\n// Callout type mapping for observation types\nconst CALLOUT_MAP: Record<string, string> = {\n  gotcha: 'warning',\n  bug_fix: 'bug',\n  decision: 'info',\n  discovery: 'tip',\n  trade_off: 'question',\n};\n\nexport function observationCalloutType(observationType: string): string {\n  return CALLOUT_MAP[observationType] ?? 'note';\n}\n\n/**\n * Escape angle brackets that Obsidian would interpret as HTML tags.\n * Matches `<` followed by a letter, `/`, or `!` (opening/closing tags, comments).\n */\nexport function escapeHtmlTags(text: string): string {\n  return text.replace(/<(?=[a-zA-Z/!])/g, '\\\\<');\n}\n\nexport function callout(type: string, title: string, content: string): string {\n  const safe = escapeHtmlTags(content);\n  const indented = safe.split('\\n').map((line) => `> ${line}`).join('\\n');\n  return `> [!${type}] ${title}\\n${indented}`;\n}\n\nexport function inlineField(key: string, value: string): string {\n  return `${key}:: ${value}`;\n}\n\nexport function wikilink(target: string, display?: string): string {\n  return display ? `[[${target}|${display}]]` : `[[${target}]]`;\n}\n\n/**\n * Normalize an observation_type to a tag-safe form.\n * Frontmatter keeps underscores; tags use hyphens per Obsidian convention.\n */\nfunction tagNormalize(s: string): string {\n  return s.replace(/_/g, '-');\n}\n\n/**\n * Sanitize a user/LLM-provided tag for Obsidian compatibility.\n * Obsidian tags cannot contain spaces — replace with slash (nested tag).\n * Strips leading # if present.\n */\nfunction sanitizeTag(raw: string): string {\n  const stripped = raw.startsWith('#') ? raw.slice(1) : raw;\n  return stripped.replace(/\\s+/g, '/');\n}\n\nexport function buildTags(type: string, subtype: string, extraTags: string[] = []): string[] {\n  const tags: string[] = [`type/${type}`];\n\n  if (subtype) {\n    tags.push(`${type}/${tagNormalize(subtype)}`);\n  }\n\n  for (const tag of extraTags) {\n    const normalized = sanitizeTag(tag);\n    if (normalized && !tags.includes(normalized)) {\n      tags.push(normalized);\n    }\n  }\n\n  return tags;\n}\n\nexport function footerTags(tags: string[]): string {\n  return tags.map((t) => (t.startsWith('#') ? t : `#${t}`)).join(' ');\n}\n\n// --- Session formatting ---\n\nexport interface SessionBodyInput {\n  title: string;\n  narrative: string;\n  sessionId: string;\n  user?: string;\n  started?: string;\n  ended?: string;\n  branch?: string;\n  relatedMemories?: Array<{ id: string; title: string }>;\n  turns: Array<{\n    prompt: string;\n    toolCount: number;\n    aiResponse?: string;\n    /** Filenames of images in the vault attachments folder */\n    images?: string[];\n  }>;\n  tags?: string[];\n}\n\nexport function formatSessionBody(input: SessionBodyInput): string {\n  const sections: string[] = [];\n\n  sections.push(`# ${input.title}`);\n\n  if (input.narrative) {\n    sections.push(callout('abstract', 'Summary', input.narrative));\n  }\n\n  // Inline fields\n  const fields: string[] = [];\n  fields.push(inlineField('Session', wikilink(sessionNoteId(input.sessionId))));\n  if (input.user) fields.push(inlineField('User', input.user));\n  if (input.started && input.ended) {\n    const duration = formatDuration(input.started, input.ended);\n    if (duration) fields.push(inlineField('Duration', duration));\n  }\n  if (input.branch) fields.push(inlineField('Branch', `\\`${input.branch}\\``));\n  sections.push(fields.join('\\n'));\n\n  // Related spores\n  if (input.relatedMemories?.length) {\n    const links = input.relatedMemories.map((m) => `- ${wikilink(m.id, m.title)}`);\n    sections.push(`## Related Spores\\n${links.join('\\n')}`);\n  }\n\n  // Conversation turns — always rebuilt from the full transcript.\n  // The transcript is the source of truth for the complete conversation.\n  if (input.turns.length > 0) {\n    const turnLines: string[] = [];\n    for (let i = 0; i < input.turns.length; i++) {\n      const turn = input.turns[i];\n      const turnNum = i + 1;\n      turnLines.push(`### Turn ${turnNum}`);\n      if (turn.prompt || turn.images?.length) {\n        // Build prompt content: text + images + tool count\n        const parts: string[] = [];\n        if (turn.prompt) parts.push(turn.prompt);\n        if (turn.images?.length) {\n          parts.push(turn.images.map((f) => `![[${f}]]`).join('\\n'));\n        }\n        if (turn.toolCount > 0) parts.push(`*${turn.toolCount} tool calls*`);\n        turnLines.push(callout('user', 'Prompt', parts.join('\\n\\n')));\n      } else if (turn.toolCount > 0) {\n        turnLines.push(callout('user', 'Prompt', `*${turn.toolCount} tool calls*`));\n      }\n      if (turn.aiResponse) {\n        turnLines.push(callout('assistant', 'Response', turn.aiResponse));\n      }\n    }\n    sections.push(`## Conversation\\n\\n${turnLines.join('\\n\\n')}`);\n  }\n\n  // Footer tags\n  const allTags = buildTags('session', 'ended', [\n    ...(input.user ? [`user/${input.user}`] : []),\n    ...(input.tags ?? []),\n  ]);\n  sections.push(footerTags(allTags));\n\n  return sections.join('\\n\\n');\n}\n\n// --- Spore formatting ---\n\nexport interface SporeBodyInput {\n  title: string;\n  observationType: string;\n  content: string;\n  sessionId?: string;\n  root_cause?: string;\n  fix?: string;\n  rationale?: string;\n  alternatives_rejected?: string;\n  gained?: string;\n  sacrificed?: string;\n  tags?: string[];\n}\n\nexport function formatSporeBody(input: SporeBodyInput): string {\n  const sections: string[] = [];\n  const calloutType = observationCalloutType(input.observationType);\n  const calloutTitle = capitalize(tagNormalize(input.observationType));\n\n  sections.push(`# ${input.title}`);\n  sections.push(callout(calloutType, calloutTitle, input.content));\n\n  // Inline fields\n  const fields: string[] = [];\n  if (input.sessionId) {\n    fields.push(inlineField('Session', wikilink(sessionNoteId(input.sessionId))));\n  }\n  fields.push(inlineField('Observation', input.observationType));\n  if (fields.length > 0) sections.push(fields.join('\\n'));\n\n  // Type-specific sub-sections\n  if (input.root_cause) sections.push(`## Root Cause\\n${input.root_cause}`);\n  if (input.fix) sections.push(`## Fix\\n${input.fix}`);\n  if (input.rationale) sections.push(`## Rationale\\n${input.rationale}`);\n  if (input.alternatives_rejected) sections.push(`## Alternatives Rejected\\n${input.alternatives_rejected}`);\n  if (input.gained) sections.push(`## Gained\\n${input.gained}`);\n  if (input.sacrificed) sections.push(`## Sacrificed\\n${input.sacrificed}`);\n\n  // Footer tags\n  const allTags = buildTags('spore', input.observationType, input.tags ?? []);\n  sections.push(footerTags(allTags));\n\n  return sections.join('\\n\\n');\n}\n\n// --- Plan formatting ---\n\nexport interface PlanBodyInput {\n  id: string;\n  status: string;\n  author?: string;\n  created?: string;\n  sessions?: Array<{ id: string; title: string }>;\n  content: string;\n  tags?: string[];\n}\n\nexport function formatPlanBody(input: PlanBodyInput): string {\n  const sections: string[] = [];\n\n  // Inline fields block\n  const fields: string[] = [];\n  fields.push(inlineField('Plan', wikilink(input.id)));\n  fields.push(inlineField('Status', input.status));\n  if (input.author) fields.push(inlineField('Author', input.author));\n  if (input.created) fields.push(inlineField('Created', input.created));\n  sections.push(fields.join('\\n'));\n\n  // User-provided content body (don't restructure)\n  sections.push(input.content);\n\n  // Sessions section\n  if (input.sessions?.length) {\n    const links = input.sessions.map((s) => `- ${wikilink(sessionNoteId(s.id), s.title)}`);\n    sections.push(`## Sessions\\n${links.join('\\n')}`);\n  }\n\n  // Footer tags\n  const statusTag = tagNormalize(input.status);\n  const allTags = buildTags('plan', statusTag, input.tags ?? []);\n  sections.push(footerTags(allTags));\n\n  return sections.join('\\n\\n');\n}\n\n// --- Artifact formatting ---\n\nexport interface ArtifactBodyInput {\n  id: string;\n  title: string;\n  artifact_type: ArtifactType;\n  source_path: string;\n  sessionId: string;\n  content: string;\n  tags?: string[];\n}\n\nexport function formatArtifactBody(input: ArtifactBodyInput): string {\n  const sections: string[] = [];\n\n  // Inline fields\n  const fields: string[] = [];\n  fields.push(inlineField('Artifact', wikilink(input.id)));\n  fields.push(inlineField('Source', `\\`${input.source_path}\\``));\n  fields.push(inlineField('Type', input.artifact_type));\n  fields.push(inlineField('Session', wikilink(sessionNoteId(input.sessionId))));\n  sections.push(fields.join('\\n'));\n\n  // Body: full content from disk\n  sections.push(input.content);\n\n  // Footer tags\n  const allTags = buildTags('artifact', input.artifact_type, input.tags ?? []);\n  sections.push(footerTags(allTags));\n\n  return sections.join('\\n\\n');\n}\n\n// --- Team formatting ---\n\nexport interface TeamBodyInput {\n  user: string;\n  role?: string;\n  recentSessions?: Array<{ id: string; title: string }>;\n}\n\nexport function formatTeamBody(input: TeamBodyInput): string {\n  const sections: string[] = [];\n\n  sections.push(`# ${input.user}`);\n  sections.push(callout('info', 'Team Member', input.role ?? 'Contributor'));\n\n  // Inline fields\n  const fields: string[] = [];\n  fields.push(inlineField('User', input.user));\n  if (input.role) fields.push(inlineField('Role', input.role));\n  sections.push(fields.join('\\n'));\n\n  // Recent sessions\n  if (input.recentSessions?.length) {\n    const links = input.recentSessions.map((s) => `- ${wikilink(sessionNoteId(s.id), s.title)}`);\n    sections.push(`## Recent Sessions\\n${links.join('\\n')}`);\n  }\n\n  // Footer tags\n  const allTags = buildTags('team', '', [`user/${input.user}`]);\n  sections.push(footerTags(allTags));\n\n  return sections.join('\\n\\n');\n}\n\n// --- Helpers ---\n\nfunction capitalize(s: string): string {\n  return s.charAt(0).toUpperCase() + s.slice(1);\n}\n\nfunction formatDuration(started: string, ended: string): string {\n  const ms = new Date(ended).getTime() - new Date(started).getTime();\n  if (isNaN(ms) || ms < 0) return '';\n  const totalMinutes = Math.floor(ms / 60000);\n  if (totalMinutes < 1) return '<1m';\n  const hours = Math.floor(totalMinutes / 60);\n  const minutes = totalMinutes % 60;\n  if (hours === 0) return `${minutes}m`;\n  if (minutes === 0) return `${hours}h`;\n  return `${hours}h ${minutes}m`;\n}\n","import fs from 'node:fs';\nimport path from 'node:path';\nimport YAML from 'yaml';\nimport { buildTags, formatTeamBody, formatPlanBody, formatArtifactBody } from '../obsidian/formatter.js';\nimport type { ArtifactType } from './types.js';\nimport { sessionNoteId, sessionRelativePath } from './session-id.js';\n\ninterface WriteSessionInput {\n  id: string;\n  agent?: string;\n  user?: string;\n  started: string;\n  ended?: string;\n  parent?: string;\n  parent_reason?: string;\n  plans?: string[];\n  branch?: string;\n  tags?: string[];\n  tools_used?: number;\n  files_changed?: number;\n  summary: string;\n}\n\ninterface WritePlanInput {\n  id: string;\n  status?: string;\n  author?: string;\n  tags?: string[];\n  content: string;\n}\n\ninterface WriteSporeInput {\n  id: string;\n  observation_type: string;\n  session?: string;\n  plan?: string;\n  tags?: string[];\n  content: string;\n}\n\ninterface WriteArtifactInput {\n  id: string;\n  artifact_type: ArtifactType;\n  source_path: string;\n  title: string;\n  session: string;\n  tags?: string[];\n  content: string;\n}\n\ninterface WriteTeamMemberInput {\n  user: string;\n  role?: string;\n}\n\nexport class VaultWriter {\n  constructor(private vaultDir: string) {}\n\n  writeSession(input: WriteSessionInput): string {\n    const date = input.started.slice(0, 10);\n    const relativePath = sessionRelativePath(input.id, date);\n\n    const frontmatter: Record<string, unknown> = {\n      type: 'session',\n      id: input.id,\n      agent: input.agent ?? 'claude-code',\n      user: input.user ?? '',\n      started: input.started,\n    };\n    if (input.ended) frontmatter.ended = input.ended;\n    if (input.parent) frontmatter.parent = input.parent;\n    if (input.parent_reason) frontmatter.parent_reason = input.parent_reason;\n    if (input.plans?.length) frontmatter.plans = input.plans;\n    if (input.branch) frontmatter.branch = input.branch;\n    frontmatter.tags = buildTags('session', 'ended', [\n      ...(input.user ? [`user/${input.user}`] : []),\n      ...(input.tags ?? []),\n    ]);\n    if (input.tools_used != null) frontmatter.tools_used = input.tools_used;\n    if (input.files_changed != null) frontmatter.files_changed = input.files_changed;\n\n    this.writeMarkdown(relativePath, frontmatter, input.summary);\n    return relativePath;\n  }\n\n  writePlan(input: WritePlanInput): string {\n    const relativePath = `plans/${input.id}.md`;\n    const fullPath = path.join(this.vaultDir, relativePath);\n\n    const status = input.status ?? 'active';\n    let created = new Date().toISOString();\n\n    // Preserve created from existing file (idempotent)\n    try {\n      const existing = fs.readFileSync(fullPath, 'utf-8');\n      const fmMatch = existing.match(/^---\\n([\\s\\S]*?)\\n---/);\n      if (fmMatch) {\n        const parsed = YAML.parse(fmMatch[1]) as Record<string, unknown>;\n        if (typeof parsed.created === 'string') created = parsed.created;\n      }\n    } catch {\n      // File doesn't exist yet\n    }\n    const frontmatter: Record<string, unknown> = {\n      type: 'plan',\n      id: input.id,\n      status,\n      created,\n    };\n    if (input.author) frontmatter.author = input.author;\n    frontmatter.tags = buildTags('plan', status, input.tags ?? []);\n\n    const body = formatPlanBody({\n      id: input.id,\n      status,\n      author: input.author,\n      created,\n      content: input.content,\n      tags: input.tags,\n    });\n\n    this.writeMarkdown(relativePath, frontmatter, body);\n    return relativePath;\n  }\n\n  writeSpore(input: WriteSporeInput): string {\n    const normalizedType = input.observation_type.replace(/_/g, '-');\n    const relativePath = `spores/${normalizedType}/${input.id}.md`;\n    const fullPath = path.join(this.vaultDir, relativePath);\n    const now = new Date().toISOString();\n\n    // Preserve created from existing file (idempotent)\n    let created = now;\n    try {\n      const existing = fs.readFileSync(fullPath, 'utf-8');\n      const fmMatch = existing.match(/^---\\n([\\s\\S]*?)\\n---/);\n      if (fmMatch) {\n        const parsed = YAML.parse(fmMatch[1]) as Record<string, unknown>;\n        if (typeof parsed.created === 'string') created = parsed.created;\n      }\n    } catch {\n      // File doesn't exist yet — created = now\n    }\n\n    const frontmatter: Record<string, unknown> = {\n      type: 'spore',\n      id: input.id,\n      observation_type: input.observation_type,\n      created,\n    };\n    if (input.session) frontmatter.session = input.session;\n    if (input.plan) frontmatter.plan = input.plan;\n    frontmatter.tags = buildTags('spore', input.observation_type, input.tags ?? []);\n\n    this.writeMarkdown(relativePath, frontmatter, input.content);\n    return relativePath;\n  }\n\n  writeArtifact(input: WriteArtifactInput): string {\n    const relativePath = `artifacts/${input.id}.md`;\n    const fullPath = path.join(this.vaultDir, relativePath);\n    const now = new Date().toISOString();\n\n    let created = now;\n\n    // Preserve created from existing file (latest-wins update)\n    try {\n      const existing = fs.readFileSync(fullPath, 'utf-8');\n      const fmMatch = existing.match(/^---\\n([\\s\\S]*?)\\n---/);\n      if (fmMatch) {\n        const parsed = YAML.parse(fmMatch[1]) as Record<string, unknown>;\n        if (typeof parsed.created === 'string') created = parsed.created;\n      }\n    } catch {\n      // File doesn't exist yet — created = now\n    }\n\n    const frontmatter: Record<string, unknown> = {\n      type: 'artifact',\n      id: input.id,\n      artifact_type: input.artifact_type,\n      source_path: input.source_path,\n      title: input.title,\n      last_captured_by: sessionNoteId(input.session),\n      created,\n      updated: now,\n      tags: buildTags('artifact', input.artifact_type, input.tags ?? []),\n    };\n\n    const body = formatArtifactBody({\n      id: input.id,\n      title: input.title,\n      artifact_type: input.artifact_type,\n      source_path: input.source_path,\n      sessionId: input.session,\n      content: input.content,\n      tags: input.tags,\n    });\n\n    this.writeMarkdown(relativePath, frontmatter, body);\n    return relativePath;\n  }\n\n  writeTeamMember(input: WriteTeamMemberInput): string {\n    const relativePath = `team/${input.user}.md`;\n\n    const frontmatter: Record<string, unknown> = {\n      type: 'team-member',\n      user: input.user,\n      joined: new Date().toISOString(),\n      tags: buildTags('team', '', [`user/${input.user}`]),\n    };\n    if (input.role) frontmatter.role = input.role;\n\n    const body = formatTeamBody({\n      user: input.user,\n      role: input.role,\n    });\n\n    this.writeMarkdown(relativePath, frontmatter, body);\n    return relativePath;\n  }\n\n  /**\n   * Update frontmatter fields on an existing note without touching the body.\n   * By default only adds fields that don't exist. Set overwrite=true to replace existing values.\n   * Returns true if the update was applied, false if the file doesn't exist.\n   */\n  updateNoteFrontmatter(relativePath: string, fields: Record<string, unknown>, overwrite = false): boolean {\n    const fullPath = path.join(this.vaultDir, relativePath);\n    let fileContent: string;\n    try {\n      fileContent = fs.readFileSync(fullPath, 'utf-8');\n    } catch {\n      return false;\n    }\n\n    const fmMatch = fileContent.match(/^---\\n([\\s\\S]*?)\\n---/);\n    if (!fmMatch) return false;\n\n    const parsed = YAML.parse(fmMatch[1]) as Record<string, unknown>;\n    for (const [key, value] of Object.entries(fields)) {\n      if (overwrite || parsed[key] === undefined) {\n        parsed[key] = value;\n      }\n    }\n\n    const body = fileContent.slice(fmMatch[0].length);\n    const fmYaml = YAML.stringify(parsed, { defaultStringType: 'QUOTE_DOUBLE', defaultKeyType: 'PLAIN' }).trim();\n    this.atomicWrite(fullPath, `---\\n${fmYaml}\\n---${body}`);\n    return true;\n  }\n\n  /** @deprecated Use updateNoteFrontmatter instead */\n  updateSessionFrontmatter(relativePath: string, fields: Record<string, unknown>): boolean {\n    return this.updateNoteFrontmatter(relativePath, fields);\n  }\n\n  private writeMarkdown(relativePath: string, frontmatter: Record<string, unknown>, content: string): void {\n    const fullPath = path.join(this.vaultDir, relativePath);\n    fs.mkdirSync(path.dirname(fullPath), { recursive: true });\n\n    const fmYaml = YAML.stringify(frontmatter, { defaultStringType: 'QUOTE_DOUBLE', defaultKeyType: 'PLAIN' }).trim();\n    const file = `---\\n${fmYaml}\\n---\\n\\n${content}\\n`;\n    this.atomicWrite(fullPath, file);\n  }\n\n  /** Write to a temp file then rename — prevents Obsidian from seeing a truncated file mid-write. */\n  private atomicWrite(fullPath: string, content: string): void {\n    const tmp = `${fullPath}.tmp`;\n    fs.writeFileSync(tmp, content, 'utf-8');\n    fs.renameSync(tmp, fullPath);\n  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package/dist/chunk-VYV5IFD6.js

@@ -0,0 +1,99 @@
+import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
+import {
+  parseStringFlag
+} from "./chunk-SAKJMNSR.js";
+import {
+  MycoConfigSchema,
+  require_dist
+} from "./chunk-G6ZMTQMJ.js";
+import {
+  __toESM
+} from "./chunk-PZUWP5VK.js";
+
+// src/cli/setup-llm.ts
+var import_yaml = __toESM(require_dist(), 1);
+import fs from "fs";
+import path from "path";
+var CONFIG_FILENAME = "myco.yaml";
+var DAEMON_STATE_FILENAME = "daemon.json";
+var USAGE = `Usage: myco setup-llm [options]
+
+Configure LLM and embedding provider settings.
+
+Options:
+  --llm-provider <name>         LLM provider (ollama, lm-studio, anthropic)
+  --llm-model <name>            LLM model name
+  --llm-url <url>               LLM provider base URL
+  --llm-context-window <number> LLM context window (tokens)
+  --llm-max-tokens <number>     LLM max output tokens
+  --embedding-provider <name>   Embedding provider (ollama, lm-studio)
+  --embedding-model <name>      Embedding model name
+  --embedding-url <url>         Embedding provider base URL
+  --show                        Show current settings and exit
+`;
+async function run(args, vaultDir) {
+  const configPath = path.join(vaultDir, CONFIG_FILENAME);
+  const raw = fs.readFileSync(configPath, "utf-8");
+  const doc = import_yaml.default.parse(raw);
+  if (args.includes("--show")) {
+    const config = MycoConfigSchema.parse(doc);
+    console.log(JSON.stringify(config.intelligence, null, 2));
+    return;
+  }
+  if (args.length === 0) {
+    console.log(USAGE);
+    return;
+  }
+  if (!doc.intelligence || typeof doc.intelligence !== "object") {
+    doc.intelligence = {};
+  }
+  const intelligence = doc.intelligence;
+  if (!intelligence.llm || typeof intelligence.llm !== "object") {
+    intelligence.llm = {};
+  }
+  if (!intelligence.embedding || typeof intelligence.embedding !== "object") {
+    intelligence.embedding = {};
+  }
+  const llm = intelligence.llm;
+  const embedding = intelligence.embedding;
+  const llmProvider = parseStringFlag(args, "--llm-provider");
+  if (llmProvider !== void 0) llm.provider = llmProvider;
+  const llmModel = parseStringFlag(args, "--llm-model");
+  if (llmModel !== void 0) llm.model = llmModel;
+  const llmUrl = parseStringFlag(args, "--llm-url");
+  if (llmUrl !== void 0) llm.base_url = llmUrl;
+  const llmContextWindow = parseStringFlag(args, "--llm-context-window");
+  if (llmContextWindow !== void 0) llm.context_window = parseInt(llmContextWindow, 10);
+  const llmMaxTokens = parseStringFlag(args, "--llm-max-tokens");
+  if (llmMaxTokens !== void 0) llm.max_tokens = parseInt(llmMaxTokens, 10);
+  const embeddingProvider = parseStringFlag(args, "--embedding-provider");
+  if (embeddingProvider !== void 0) embedding.provider = embeddingProvider;
+  const embeddingModel = parseStringFlag(args, "--embedding-model");
+  if (embeddingModel !== void 0) embedding.model = embeddingModel;
+  const embeddingUrl = parseStringFlag(args, "--embedding-url");
+  if (embeddingUrl !== void 0) embedding.base_url = embeddingUrl;
+  const result = MycoConfigSchema.safeParse(doc);
+  if (!result.success) {
+    console.error("Validation error:");
+    for (const issue of result.error.issues) {
+      console.error(`  ${issue.path.join(".")}: ${issue.message}`);
+    }
+    process.exit(1);
+  }
+  fs.writeFileSync(configPath, import_yaml.default.stringify(doc), "utf-8");
+  console.log("Intelligence configuration updated.");
+  const updated = MycoConfigSchema.parse(doc);
+  console.log(JSON.stringify(updated.intelligence, null, 2));
+  if (embeddingModel !== void 0) {
+    console.log("\nWarning: changing the embedding model requires a full vector index rebuild.");
+    console.log("Run: node dist/src/cli.js rebuild");
+  }
+  if (fs.existsSync(path.join(vaultDir, DAEMON_STATE_FILENAME))) {
+    console.log("\nNote: restart the daemon for changes to take effect (myco restart)");
+  }
+}
+
+export {
+  run
+};
+//# sourceMappingURL=chunk-VYV5IFD6.js.map

package/dist/chunk-VYV5IFD6.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/cli/setup-llm.ts"],"sourcesContent":["import fs from 'node:fs';\nimport path from 'node:path';\nimport YAML from 'yaml';\nimport { MycoConfigSchema } from '../config/schema.js';\nimport { parseStringFlag } from './shared.js';\n\nconst CONFIG_FILENAME = 'myco.yaml';\nconst DAEMON_STATE_FILENAME = 'daemon.json';\n\nconst USAGE = `Usage: myco setup-llm [options]\n\nConfigure LLM and embedding provider settings.\n\nOptions:\n  --llm-provider <name>         LLM provider (ollama, lm-studio, anthropic)\n  --llm-model <name>            LLM model name\n  --llm-url <url>               LLM provider base URL\n  --llm-context-window <number> LLM context window (tokens)\n  --llm-max-tokens <number>     LLM max output tokens\n  --embedding-provider <name>   Embedding provider (ollama, lm-studio)\n  --embedding-model <name>      Embedding model name\n  --embedding-url <url>         Embedding provider base URL\n  --show                        Show current settings and exit\n`;\n\nexport async function run(args: string[], vaultDir: string): Promise<void> {\n  const configPath = path.join(vaultDir, CONFIG_FILENAME);\n  const raw = fs.readFileSync(configPath, 'utf-8');\n  const doc = YAML.parse(raw) as Record<string, unknown>;\n\n  // Show current settings\n  if (args.includes('--show')) {\n    const config = MycoConfigSchema.parse(doc);\n    console.log(JSON.stringify(config.intelligence, null, 2));\n    return;\n  }\n\n  // No flags = show usage\n  if (args.length === 0) {\n    console.log(USAGE);\n    return;\n  }\n\n  // Ensure intelligence section exists\n  if (!doc.intelligence || typeof doc.intelligence !== 'object') {\n    doc.intelligence = {};\n  }\n  const intelligence = doc.intelligence as Record<string, unknown>;\n\n  if (!intelligence.llm || typeof intelligence.llm !== 'object') {\n    intelligence.llm = {};\n  }\n  if (!intelligence.embedding || typeof intelligence.embedding !== 'object') {\n    intelligence.embedding = {};\n  }\n\n  const llm = intelligence.llm as Record<string, unknown>;\n  const embedding = intelligence.embedding as Record<string, unknown>;\n\n  // Parse and apply flags\n  const llmProvider = parseStringFlag(args, '--llm-provider');\n  if (llmProvider !== undefined) llm.provider = llmProvider;\n\n  const llmModel = parseStringFlag(args, '--llm-model');\n  if (llmModel !== undefined) llm.model = llmModel;\n\n  const llmUrl = parseStringFlag(args, '--llm-url');\n  if (llmUrl !== undefined) llm.base_url = llmUrl;\n\n  const llmContextWindow = parseStringFlag(args, '--llm-context-window');\n  if (llmContextWindow !== undefined) llm.context_window = parseInt(llmContextWindow, 10);\n\n  const llmMaxTokens = parseStringFlag(args, '--llm-max-tokens');\n  if (llmMaxTokens !== undefined) llm.max_tokens = parseInt(llmMaxTokens, 10);\n\n  const embeddingProvider = parseStringFlag(args, '--embedding-provider');\n  if (embeddingProvider !== undefined) embedding.provider = embeddingProvider;\n\n  const embeddingModel = parseStringFlag(args, '--embedding-model');\n  if (embeddingModel !== undefined) embedding.model = embeddingModel;\n\n  const embeddingUrl = parseStringFlag(args, '--embedding-url');\n  if (embeddingUrl !== undefined) embedding.base_url = embeddingUrl;\n\n  // Validate the full config\n  const result = MycoConfigSchema.safeParse(doc);\n  if (!result.success) {\n    console.error('Validation error:');\n    for (const issue of result.error.issues) {\n      console.error(`  ${issue.path.join('.')}: ${issue.message}`);\n    }\n    process.exit(1);\n  }\n\n  // Write back\n  fs.writeFileSync(configPath, YAML.stringify(doc), 'utf-8');\n  console.log('Intelligence configuration updated.');\n\n  // Show what was set\n  const updated = MycoConfigSchema.parse(doc);\n  console.log(JSON.stringify(updated.intelligence, null, 2));\n\n  // Warn about embedding model changes\n  if (embeddingModel !== undefined) {\n    console.log('\\nWarning: changing the embedding model requires a full vector index rebuild.');\n    console.log('Run: node dist/src/cli.js rebuild');\n  }\n\n  if (fs.existsSync(path.join(vaultDir, DAEMON_STATE_FILENAME))) {\n    console.log('\\nNote: restart the daemon for changes to take effect (myco restart)');\n  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package/dist/{chunk-LR7RQCOB.js → chunk-XCPQHC4X.js}

@@ -1,7 +1,7 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   AgentRegistry
-} from "./chunk-JKOALBZC.js";
+} from "./chunk-BNIYWCST.js";
 
 // src/native-deps.ts
 import { execFileSync } from "child_process";
@@ -53,4 +53,4 @@ function ensureNativeDeps() {
 export {
   ensureNativeDeps
 };
-//# sourceMappingURL=chunk-LR7RQCOB.js.map
+//# sourceMappingURL=chunk-XCPQHC4X.js.map

package/dist/{chunk-CCIV47S4.js → chunk-XHWIIU5D.js}

@@ -2,10 +2,10 @@ import { createRequire as __cr } from 'node:module'; const require = __cr(import
 import {
   LmStudioBackend,
   OllamaBackend
-} from "./chunk-BA23DROX.js";
+} from "./chunk-P7RNAYU7.js";
 import {
   AgentRegistry
-} from "./chunk-JKOALBZC.js";
+} from "./chunk-BNIYWCST.js";
 
 // src/cli/shared.ts
 import fs from "fs";
@@ -48,22 +48,22 @@ TABLE user, started, tools_used FROM #type/session
 SORT started DESC LIMIT 10
 \`\`\`
 
-## Recent Memories
+## Recent Spores
 \`\`\`dataview
-TABLE observation_type AS "Type", created FROM #type/memory
+TABLE observation_type AS "Type", created FROM #type/spore
 SORT created DESC LIMIT 15
 \`\`\`
 
-## Memories by Type
+## Spores by Type
 \`\`\`dataview
 TABLE WITHOUT ID observation_type AS "Type", length(rows) AS "Count"
-FROM #type/memory GROUP BY observation_type
+FROM #type/spore GROUP BY observation_type
 SORT length(rows) DESC
 \`\`\`
 
 ## Gotchas
 \`\`\`dataview
-LIST FROM #memory/gotcha SORT created DESC LIMIT 10
+LIST FROM #spore/gotcha SORT created DESC LIMIT 10
 \`\`\`
 `;
 var VAULT_GITIGNORE = `# Runtime \u2014 rebuilt on daemon startup
@@ -112,9 +112,8 @@ For other agents, add to your shell profile:`);
 export {
   loadEnv,
   isProcessAlive,
-  PROVIDER_DEFAULTS,
   DASHBOARD_CONTENT,
   VAULT_GITIGNORE,
   configureVaultEnv
 };
-//# sourceMappingURL=chunk-CCIV47S4.js.map
+//# sourceMappingURL=chunk-XHWIIU5D.js.map

package/dist/chunk-XHWIIU5D.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/cli/shared.ts"],"sourcesContent":["import fs from 'node:fs';\nimport path from 'node:path';\nimport os from 'node:os';\nimport { AgentRegistry } from '../agents/registry.js';\nimport { OllamaBackend } from '../intelligence/ollama.js';\nimport { LmStudioBackend } from '../intelligence/lm-studio.js';\n\nexport { parseStringFlag, parseIntFlag } from '../logs/format.js';\n\n/** Load .env from cwd (not script location — that's the plugin install dir). */\nexport function loadEnv(): void {\n  const envPath = path.resolve(process.cwd(), '.env');\n  if (!fs.existsSync(envPath)) return;\n  for (const line of fs.readFileSync(envPath, 'utf-8').split('\\n')) {\n    const match = line.match(/^\\s*([^#=]+?)\\s*=\\s*(.*?)\\s*$/);\n    if (match && !process.env[match[1]]) {\n      process.env[match[1]] = match[2];\n    }\n  }\n}\n\nexport function isProcessAlive(pid: number): boolean {\n  try { process.kill(pid, 0); return true; } catch { return false; }\n}\n\n// --- Provider defaults (sourced from backend classes) ---\nexport const PROVIDER_DEFAULTS: Record<string, { base_url: string }> = {\n  ollama: { base_url: OllamaBackend.DEFAULT_BASE_URL },\n  'lm-studio': { base_url: LmStudioBackend.DEFAULT_BASE_URL },\n};\n\nexport const DASHBOARD_CONTENT = `# Myco Vault\n\n## Active Plans\n\\`\\`\\`dataview\nTABLE status, tags FROM #type/plan\nWHERE status = \"active\" OR status = \"in_progress\"\nSORT created DESC\n\\`\\`\\`\n\n## Recent Sessions\n\\`\\`\\`dataview\nTABLE user, started, tools_used FROM #type/session\nSORT started DESC LIMIT 10\n\\`\\`\\`\n\n## Recent Spores\n\\`\\`\\`dataview\nTABLE observation_type AS \"Type\", created FROM #type/spore\nSORT created DESC LIMIT 15\n\\`\\`\\`\n\n## Spores by Type\n\\`\\`\\`dataview\nTABLE WITHOUT ID observation_type AS \"Type\", length(rows) AS \"Count\"\nFROM #type/spore GROUP BY observation_type\nSORT length(rows) DESC\n\\`\\`\\`\n\n## Gotchas\n\\`\\`\\`dataview\nLIST FROM #spore/gotcha SORT created DESC LIMIT 10\n\\`\\`\\`\n`;\n\nexport const VAULT_GITIGNORE = `# Runtime — rebuilt on daemon startup\nindex.db\nindex.db-wal\nindex.db-shm\nvectors.db\n\n# Daemon state — per-machine, ephemeral\ndaemon.json\nbuffer/\nlogs/\n\n# Obsidian — per-user workspace config\n.obsidian/\n`;\n\n/** Collapse an absolute home-dir path to its `~/` form for portable config storage. */\nexport function collapseHomePath(absPath: string): string {\n  const home = os.homedir();\n  if (absPath.startsWith(home + path.sep) || absPath === home) {\n    return '~' + absPath.slice(home.length);\n  }\n  return absPath;\n}\n\n/** Set MYCO_VAULT_DIR in the active agent's config, falling back to all known agents. */\nexport function configureVaultEnv(projectRoot: string, vaultDir: string): void {\n  const registry = new AgentRegistry();\n  const active = registry.detectActiveAgent();\n  // Store the portable ~/... form so config files don't leak the username\n  const portableDir = collapseHomePath(vaultDir);\n\n  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package/dist/{chunk-FFQNE6CT.js → chunk-YZO22BBI.js}

@@ -1,29 +1,26 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
-  formatMemoryBody,
+  formatSporeBody,
   sessionNoteId
-} from "./chunk-QWU7QLZI.js";
+} from "./chunk-TZDDXRHG.js";
 import {
   ARTIFACT_TYPES,
   indexNote
-} from "./chunk-AWF3M57N.js";
+} from "./chunk-S7EIHYE7.js";
 import {
   external_exports
-} from "./chunk-ISCT2SI6.js";
+} from "./chunk-G6ZMTQMJ.js";
 import {
   AgentRegistry
-} from "./chunk-JKOALBZC.js";
+} from "./chunk-BNIYWCST.js";
 import {
   AI_RESPONSE_PREVIEW_CHARS,
   CANDIDATE_CONTENT_PREVIEW,
   CHARS_PER_TOKEN,
-  CLASSIFICATION_MAX_TOKENS,
   COMMAND_PREVIEW_CHARS,
-  EXTRACTION_MAX_TOKENS,
   PROMPT_PREVIEW_CHARS,
-  SUMMARY_MAX_TOKENS,
-  TITLE_MAX_TOKENS
-} from "./chunk-7VPJK56U.js";
+  estimateTokens
+} from "./chunk-JBD5KP5G.js";
 
 // src/prompts/index.ts
 import fs from "fs";
@@ -59,18 +56,20 @@ function interpolate(template, vars) {
   }
   return result;
 }
-function buildExtractionPrompt(sessionId, eventCount, toolSummary) {
+function buildExtractionPrompt(sessionId, eventCount, toolSummary, maxTokens) {
   return interpolate(loadPrompt("extraction"), {
     sessionId,
     eventCount: String(eventCount),
-    toolSummary
+    toolSummary,
+    maxTokens: String(maxTokens ?? 2048)
   });
 }
-function buildSummaryPrompt(sessionId, user, content) {
+function buildSummaryPrompt(sessionId, user, content, maxTokens) {
   return interpolate(loadPrompt("summary"), {
     sessionId,
     user,
-    content
+    content,
+    maxTokens: String(maxTokens ?? 1024)
   });
 }
 function buildTitlePrompt(summary, sessionId) {
@@ -92,7 +91,7 @@ function buildSimilarityPrompt(currentSummary, candidateSummary) {
     candidateSummary
   });
 }
-function buildClassificationPrompt(sessionId, candidates) {
+function buildClassificationPrompt(sessionId, candidates, maxTokens) {
   const fileList = candidates.map((c) => {
     const truncated = c.content.slice(0, CANDIDATE_CONTENT_PREVIEW);
     return `### ${c.path}
@@ -104,7 +103,8 @@ ${truncated}
     sessionId,
     fileList,
     artifactTypes: ARTIFACT_TYPE_DESCRIPTIONS.map((d) => `- ${d}`).join("\n"),
-    validTypes: ARTIFACT_TYPES.join("|")
+    validTypes: ARTIFACT_TYPES.join("|"),
+    maxTokens: String(maxTokens ?? 1024)
   });
 }
 
@@ -117,7 +117,11 @@ var REASONING_PATTERNS = [
   // <reasoning>...</reasoning>answer
   /<reasoning>[\s\S]*?<\/reasoning>\s*/gi,
   // <|thinking|>...<|/thinking|>answer
-  /<\|thinking\|>[\s\S]*?<\|\/thinking\|>\s*/gi
+  /<\|thinking\|>[\s\S]*?<\|\/thinking\|>\s*/gi,
+  // Plain-text "Thinking Process:" block followed by actual content
+  // (Qwen 3.5 via LM Studio without native thinking mode)
+  // Matches from "Thinking Process:" up to the last numbered step, then the synthesis follows
+  /^Thinking Process:[\s\S]*?(?=\n(?:## |# |\*\*[A-Z]))/i
 ];
 function stripReasoningTokens(text) {
   if (!text) return text;
@@ -158,22 +162,30 @@ var ClassificationResponseSchema = external_exports.object({
   })).default([])
 });
 var BufferProcessor = class {
-  constructor(backend, contextWindow = 8192) {
+  constructor(backend, contextWindow = 8192, captureConfig) {
     this.backend = backend;
     this.contextWindow = contextWindow;
+    this.extractionMaxTokens = captureConfig?.extraction_max_tokens ?? 2048;
+    this.summaryMaxTokens = captureConfig?.summary_max_tokens ?? 512;
+    this.titleMaxTokens = captureConfig?.title_max_tokens ?? 32;
+    this.classificationMaxTokens = captureConfig?.classification_max_tokens ?? 1024;
   }
+  extractionMaxTokens;
+  summaryMaxTokens;
+  titleMaxTokens;
+  classificationMaxTokens;
   truncateForContext(data, maxTokens) {
     const available = this.contextWindow - maxTokens;
-    const dataTokens = Math.ceil(data.length / CHARS_PER_TOKEN);
+    const dataTokens = estimateTokens(data);
     if (dataTokens <= available) return data;
     const charBudget = available * CHARS_PER_TOKEN;
     return data.slice(0, charBudget);
   }
   async process(events, sessionId) {
     const rawPrompt = this.buildPromptForExtraction(events, sessionId);
-    const prompt = this.truncateForContext(rawPrompt, EXTRACTION_MAX_TOKENS);
+    const prompt = this.truncateForContext(rawPrompt, this.extractionMaxTokens);
     try {
-      const response = await this.backend.summarize(prompt, { maxTokens: EXTRACTION_MAX_TOKENS });
+      const response = await this.backend.summarize(prompt, { maxTokens: this.extractionMaxTokens });
       const parsed = extractJson(response.text);
       return {
         summary: parsed.summary,
@@ -190,14 +202,14 @@ var BufferProcessor = class {
   }
   buildPromptForExtraction(events, sessionId) {
     const toolSummary = this.summarizeEvents(events);
-    return buildExtractionPrompt(sessionId, events.length, toolSummary);
+    return buildExtractionPrompt(sessionId, events.length, toolSummary, this.extractionMaxTokens);
   }
   async summarizeSession(conversationMarkdown, sessionId, user) {
-    const truncatedContent = this.truncateForContext(conversationMarkdown, SUMMARY_MAX_TOKENS);
-    const summaryPrompt = buildSummaryPrompt(sessionId, user ?? "unknown", truncatedContent);
+    const truncatedContent = this.truncateForContext(conversationMarkdown, this.summaryMaxTokens);
+    const summaryPrompt = buildSummaryPrompt(sessionId, user ?? "unknown", truncatedContent, this.summaryMaxTokens);
     let summaryText;
     try {
-      const response = await this.backend.summarize(summaryPrompt, { maxTokens: SUMMARY_MAX_TOKENS });
+      const response = await this.backend.summarize(summaryPrompt, { maxTokens: this.summaryMaxTokens });
       summaryText = stripReasoningTokens(response.text);
     } catch (error) {
       summaryText = `Session ${sessionId} \u2014 summarization failed: ${error.message}`;
@@ -205,7 +217,7 @@ var BufferProcessor = class {
     const titlePrompt = buildTitlePrompt(summaryText, sessionId);
     let title;
     try {
-      const response = await this.backend.summarize(titlePrompt, { maxTokens: TITLE_MAX_TOKENS });
+      const response = await this.backend.summarize(titlePrompt, { maxTokens: this.titleMaxTokens });
       title = stripReasoningTokens(response.text).trim();
     } catch {
       title = `Session ${sessionId}`;
@@ -215,13 +227,13 @@ var BufferProcessor = class {
   async classifyArtifacts(candidates, sessionId) {
     if (candidates.length === 0) return [];
     const prompt = this.buildPromptForClassification(candidates, sessionId);
-    const response = await this.backend.summarize(prompt, { maxTokens: CLASSIFICATION_MAX_TOKENS });
+    const response = await this.backend.summarize(prompt, { maxTokens: this.classificationMaxTokens });
     const raw = extractJson(response.text);
     const parsed = ClassificationResponseSchema.parse(raw);
     return parsed.artifacts;
   }
   buildPromptForClassification(candidates, sessionId) {
-    return buildClassificationPrompt(sessionId, candidates);
+    return buildClassificationPrompt(sessionId, candidates, this.classificationMaxTokens);
   }
   summarizeEvents(events) {
     const toolCounts = /* @__PURE__ */ new Map();
@@ -325,7 +337,7 @@ function writeObservationNotes(observations, sessionId, writer, index, vaultDir)
   const results = [];
   for (const obs of observations) {
     const obsId = `${obs.type}-${sessionId.slice(-6)}-${Date.now()}`;
-    const body = formatMemoryBody({
+    const body = formatSporeBody({
       title: obs.title,
       observationType: obs.type,
       content: obs.content,
@@ -338,7 +350,7 @@ function writeObservationNotes(observations, sessionId, writer, index, vaultDir)
       sacrificed: obs.sacrificed,
       tags: obs.tags
     });
-    const relativePath = writer.writeMemory({
+    const relativePath = writer.writeSpore({
       id: obsId,
       observation_type: obs.type,
       session: sessionNoteId(sessionId),
@@ -352,11 +364,13 @@ function writeObservationNotes(observations, sessionId, writer, index, vaultDir)
 }
 
 export {
+  loadPrompt,
   buildSimilarityPrompt,
+  stripReasoningTokens,
   extractNumber,
   BufferProcessor,
   TranscriptMiner,
   extractTurnsFromBuffer,
   writeObservationNotes
 };
-//# sourceMappingURL=chunk-FFQNE6CT.js.map
+//# sourceMappingURL=chunk-YZO22BBI.js.map

package/dist/chunk-YZO22BBI.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/prompts/index.ts","../src/intelligence/response.ts","../src/daemon/processor.ts","../src/capture/transcript-miner.ts","../src/vault/observations.ts"],"sourcesContent":["/**\n * Prompt loader — reads .md templates from disk and interpolates variables.\n * Prompts are markdown files in this directory, not TypeScript strings.\n */\n\nimport fs from 'node:fs';\nimport path from 'node:path';\nimport { fileURLToPath } from 'node:url';\nimport { ARTIFACT_TYPES } from '../vault/types.js';\nimport { CANDIDATE_CONTENT_PREVIEW } from '../constants.js';\n\n/**\n * Resolve the prompts directory. With tsup code-splitting, import.meta.url\n * points to a chunk file (dist/chunk-XXXX.js), not dist/src/prompts/.\n * Walk up from the current file to find package.json, then use dist/src/prompts/.\n */\nfunction resolvePromptsDir(): string {\n  let dir = path.dirname(fileURLToPath(import.meta.url));\n  for (let i = 0; i < 5; i++) {\n    if (fs.existsSync(path.join(dir, 'package.json'))) {\n      return path.join(dir, 'dist', 'src', 'prompts');\n    }\n    // Also check if we're already in the right place (tsc output or dev mode)\n    if (fs.existsSync(path.join(dir, 'extraction.md'))) {\n      return dir;\n    }\n    dir = path.dirname(dir);\n  }\n  // Final fallback: adjacent to current file (works with tsc)\n  return path.dirname(fileURLToPath(import.meta.url));\n}\n\nconst PROMPTS_DIR = resolvePromptsDir();\n\nconst promptCache = new Map<string, string>();\n\nexport function loadPrompt(name: string): string {\n  let cached = promptCache.get(name);\n  if (!cached) {\n    cached = fs.readFileSync(path.join(PROMPTS_DIR, `${name}.md`), 'utf-8').trim();\n    promptCache.set(name, cached);\n  }\n  return cached;\n}\n\nfunction interpolate(template: string, vars: Record<string, string>): string {\n  let result = template;\n  for (const [key, value] of Object.entries(vars)) {\n    result = result.replaceAll(`{{${key}}}`, value);\n  }\n  return result;\n}\n\n// --- Prompt builders ---\n\nexport function buildExtractionPrompt(\n  sessionId: string,\n  eventCount: number,\n  toolSummary: string,\n  maxTokens?: number,\n): string {\n  return interpolate(loadPrompt('extraction'), {\n    sessionId,\n    eventCount: String(eventCount),\n    toolSummary,\n    maxTokens: String(maxTokens ?? 2048),\n  });\n}\n\nexport function buildSummaryPrompt(\n  sessionId: string,\n  user: string,\n  content: string,\n  maxTokens?: number,\n): string {\n  return interpolate(loadPrompt('summary'), {\n    sessionId,\n    user,\n    content,\n    maxTokens: String(maxTokens ?? 1024),\n  });\n}\n\nexport function buildTitlePrompt(\n  summary: string,\n  sessionId: string,\n): string {\n  return interpolate(loadPrompt('title'), {\n    summary,\n    sessionId,\n  });\n}\n\nconst ARTIFACT_TYPE_DESCRIPTIONS = [\n  '\"spec\" — Design specifications, architecture documents',\n  '\"plan\" — Implementation plans, roadmaps',\n  '\"rfc\" — Requests for comment, proposals',\n  '\"doc\" — Documentation, guides, READMEs',\n  '\"other\" — Other substantive documents',\n];\n\nexport function buildSimilarityPrompt(\n  currentSummary: string,\n  candidateSummary: string,\n): string {\n  return interpolate(loadPrompt('session-similarity'), {\n    currentSummary,\n    candidateSummary,\n  });\n}\n\nexport function buildClassificationPrompt(\n  sessionId: string,\n  candidates: Array<{ path: string; content: string }>,\n  maxTokens?: number,\n): string {\n  const fileList = candidates\n    .map((c) => {\n      const truncated = c.content.slice(0, CANDIDATE_CONTENT_PREVIEW);\n      return `### ${c.path}\\n\\`\\`\\`\\n${truncated}\\n\\`\\`\\``;\n    })\n    .join('\\n\\n');\n\n  return interpolate(loadPrompt('classification'), {\n    sessionId,\n    fileList,\n    artifactTypes: ARTIFACT_TYPE_DESCRIPTIONS.map((d) => `- ${d}`).join('\\n'),\n    validTypes: ARTIFACT_TYPES.join('|'),\n    maxTokens: String(maxTokens ?? 1024),\n  });\n}\n","/**\n * Clean LLM response text before parsing.\n *\n * Reasoning models (DeepSeek, Qwen, GLM, etc.) embed chain-of-thought\n * in the response using special tags. These must be stripped before\n * JSON parsing or value extraction.\n */\n\n// Patterns for reasoning model chain-of-thought tokens.\n// Order matters: most specific patterns first.\nconst REASONING_PATTERNS = [\n  // <think>...</think>answer  (DeepSeek, Qwen, GLM, many others)\n  /<think>[\\s\\S]*?<\\/think>\\s*/gi,\n  // Implicit opening: reasoning...</think>answer  (GLM-4.7 observed)\n  /^[\\s\\S]*?<\\/think>\\s*/i,\n  // <reasoning>...</reasoning>answer\n  /<reasoning>[\\s\\S]*?<\\/reasoning>\\s*/gi,\n  // <|thinking|>...<|/thinking|>answer\n  /<\\|thinking\\|>[\\s\\S]*?<\\|\\/thinking\\|>\\s*/gi,\n  // Plain-text \"Thinking Process:\" block followed by actual content\n  // (Qwen 3.5 via LM Studio without native thinking mode)\n  // Matches from \"Thinking Process:\" up to the last numbered step, then the synthesis follows\n  /^Thinking Process:[\\s\\S]*?(?=\\n(?:## |# |\\*\\*[A-Z]))/i,\n];\n\n/**\n * Strip reasoning/chain-of-thought tokens from LLM response text.\n * Returns the final answer without the thinking process.\n */\nexport function stripReasoningTokens(text: string): string {\n  if (!text) return text;\n\n  for (const pattern of REASONING_PATTERNS) {\n    const stripped = text.replace(pattern, '').trim();\n    if (stripped && stripped !== text.trim()) {\n      return stripped;\n    }\n  }\n\n  return text;\n}\n\n/**\n * Extract JSON from an LLM response that may contain markdown fences,\n * reasoning tokens, or other wrapper text.\n *\n * Tries in order:\n * 1. Strip reasoning tokens\n * 2. Extract from ```json ... ``` code fences\n * 3. Find bare {...} JSON object\n * 4. Parse the cleaned text directly\n */\nexport function extractJson(text: string): unknown {\n  const cleaned = stripReasoningTokens(text);\n\n  // Try code fence extraction\n  const fenceMatch = cleaned.match(/```(?:json)?\\s*\\n?([\\s\\S]*?)\\n?```/);\n  if (fenceMatch) {\n    return JSON.parse(fenceMatch[1].trim());\n  }\n\n  // Try bare JSON object\n  const objectMatch = cleaned.match(/\\{[\\s\\S]*\\}/);\n  if (objectMatch) {\n    return JSON.parse(objectMatch[0]);\n  }\n\n  // Try direct parse\n  return JSON.parse(cleaned);\n}\n\n/**\n * Extract a numeric value from an LLM response that may contain\n * reasoning tokens or extra text around the number.\n */\nexport function extractNumber(text: string): number {\n  const cleaned = stripReasoningTokens(text).trim();\n  const match = cleaned.match(/(\\d+\\.?\\d*)/);\n  if (match) return parseFloat(match[1]);\n  return parseFloat(cleaned);\n}\n","import { z } from 'zod';\nimport type { LlmProvider } from '../intelligence/llm.js';\nimport { ARTIFACT_TYPES } from '../vault/types.js';\nimport { estimateTokens, CHARS_PER_TOKEN, PROMPT_PREVIEW_CHARS, AI_RESPONSE_PREVIEW_CHARS, COMMAND_PREVIEW_CHARS } from '../constants.js';\nimport type { MycoConfig } from '../config/schema.js';\nimport type { ObservationType, ArtifactType } from '../vault/types.js';\nimport { buildExtractionPrompt, buildSummaryPrompt, buildTitlePrompt, buildClassificationPrompt } from '../prompts/index.js';\nimport { extractJson, stripReasoningTokens } from '../intelligence/response.js';\n\nexport interface Observation {\n  type: ObservationType;\n  title: string;\n  content: string;\n  tags: string[];\n  root_cause?: string;\n  fix?: string;\n  rationale?: string;\n  alternatives_rejected?: string;\n  gained?: string;\n  sacrificed?: string;\n}\n\nexport interface ProcessorResult {\n  summary: string;\n  observations: Observation[];\n  degraded: boolean;\n}\n\nexport interface ClassifiedArtifact {\n  source_path: string;\n  artifact_type: ArtifactType;\n  title: string;\n  tags: string[];\n}\n\nconst ClassificationResponseSchema = z.object({\n  artifacts: z.array(z.object({\n    source_path: z.string(),\n    artifact_type: z.enum(ARTIFACT_TYPES),\n    title: z.string(),\n    tags: z.array(z.string()).default([]),\n  })).default([]),\n});\n\nexport class BufferProcessor {\n  private extractionMaxTokens: number;\n  private summaryMaxTokens: number;\n  private titleMaxTokens: number;\n  private classificationMaxTokens: number;\n\n  constructor(private backend: LlmProvider, private contextWindow: number = 8192, captureConfig?: MycoConfig['capture']) {\n    this.extractionMaxTokens = captureConfig?.extraction_max_tokens ?? 2048;\n    this.summaryMaxTokens = captureConfig?.summary_max_tokens ?? 512;\n    this.titleMaxTokens = captureConfig?.title_max_tokens ?? 32;\n    this.classificationMaxTokens = captureConfig?.classification_max_tokens ?? 1024;\n  }\n\n  private truncateForContext(data: string, maxTokens: number): string {\n    const available = this.contextWindow - maxTokens;\n    const dataTokens = estimateTokens(data);\n    if (dataTokens <= available) return data;\n    const charBudget = available * CHARS_PER_TOKEN;\n    return data.slice(0, charBudget);\n  }\n\n  async process(\n    events: Array<Record<string, unknown>>,\n    sessionId: string,\n  ): Promise<ProcessorResult> {\n    const rawPrompt = this.buildPromptForExtraction(events, sessionId);\n    const prompt = this.truncateForContext(rawPrompt, this.extractionMaxTokens);\n\n    try {\n      const response = await this.backend.summarize(prompt, { maxTokens: this.extractionMaxTokens });\n      const parsed = extractJson(response.text) as {\n        summary: string;\n        observations: Observation[];\n      };\n\n      return {\n        summary: parsed.summary,\n        observations: parsed.observations ?? [],\n        degraded: false,\n      };\n    } catch (error) {\n      return {\n        summary: `LLM processing failed for session ${sessionId}. ${events.length} events captured. Error: ${(error as Error).message}`,\n        observations: [],\n        degraded: true,\n      };\n    }\n  }\n\n  private buildPromptForExtraction(\n    events: Array<Record<string, unknown>>,\n    sessionId: string,\n  ): string {\n    const toolSummary = this.summarizeEvents(events);\n    return buildExtractionPrompt(sessionId, events.length, toolSummary, this.extractionMaxTokens);\n  }\n\n  async summarizeSession(\n    conversationMarkdown: string,\n    sessionId: string,\n    user?: string,\n  ): Promise<{ summary: string; title: string }> {\n    const truncatedContent = this.truncateForContext(conversationMarkdown, this.summaryMaxTokens);\n    const summaryPrompt = buildSummaryPrompt(sessionId, user ?? 'unknown', truncatedContent, this.summaryMaxTokens);\n\n    let summaryText: string;\n    try {\n      const response = await this.backend.summarize(summaryPrompt, { maxTokens: this.summaryMaxTokens });\n      summaryText = stripReasoningTokens(response.text);\n    } catch (error) {\n      summaryText = `Session ${sessionId} — summarization failed: ${(error as Error).message}`;\n    }\n\n    const titlePrompt = buildTitlePrompt(summaryText, sessionId);\n    let title: string;\n    try {\n      const response = await this.backend.summarize(titlePrompt, { maxTokens: this.titleMaxTokens });\n      title = stripReasoningTokens(response.text).trim();\n    } catch {\n      title = `Session ${sessionId}`;\n    }\n\n    return { summary: summaryText, title };\n  }\n\n  async classifyArtifacts(\n    candidates: Array<{ path: string; content: string }>,\n    sessionId: string,\n  ): Promise<ClassifiedArtifact[]> {\n    if (candidates.length === 0) return [];\n\n    const prompt = this.buildPromptForClassification(candidates, sessionId);\n    const response = await this.backend.summarize(prompt, { maxTokens: this.classificationMaxTokens });\n    const raw = extractJson(response.text);\n    const parsed = ClassificationResponseSchema.parse(raw);\n    return parsed.artifacts;\n  }\n\n  private buildPromptForClassification(\n    candidates: Array<{ path: string; content: string }>,\n    sessionId: string,\n  ): string {\n    return buildClassificationPrompt(sessionId, candidates, this.classificationMaxTokens);\n  }\n\n  private summarizeEvents(events: Array<Record<string, unknown>>): string {\n    const toolCounts = new Map<string, number>();\n    const filesAccessed = new Set<string>();\n    const prompts: string[] = [];\n    const aiResponses: string[] = [];\n\n    for (const event of events) {\n      if (event.type === 'user_prompt') {\n        const prompt = String(event.prompt ?? '');\n        if (prompt) prompts.push(prompt.slice(0, PROMPT_PREVIEW_CHARS));\n        continue;\n      }\n\n      if (event.type === 'ai_response') {\n        const content = String(event.content ?? '');\n        if (content) aiResponses.push(content.slice(0, AI_RESPONSE_PREVIEW_CHARS));\n        continue;\n      }\n\n      // Hooks send tool_name/tool_input; also support legacy tool/input\n      const tool = String(event.tool_name ?? event.tool ?? 'unknown');\n      toolCounts.set(tool, (toolCounts.get(tool) ?? 0) + 1);\n\n      const input = (event.tool_input ?? event.input) as Record<string, unknown> | undefined;\n      if (input?.path) filesAccessed.add(String(input.path));\n      if (input?.file_path) filesAccessed.add(String(input.file_path));\n      if (input?.command) filesAccessed.add(`[cmd] ${String(input.command).slice(0, COMMAND_PREVIEW_CHARS)}`);\n    }\n\n    const lines: string[] = [];\n\n    if (prompts.length > 0) {\n      lines.push('### User Prompts');\n      for (const p of prompts) {\n        lines.push(`- \"${p}\"`);\n      }\n    }\n\n    lines.push('\\n### Tool Usage');\n    for (const [tool, count] of toolCounts) {\n      lines.push(`- ${tool}: ${count} calls`);\n    }\n\n    if (filesAccessed.size > 0) {\n      lines.push('\\n### Files Accessed');\n      for (const file of filesAccessed) {\n        lines.push(`- ${file}`);\n      }\n    }\n\n    if (aiResponses.length > 0) {\n      lines.push('\\n### AI Responses');\n      for (const r of aiResponses) {\n        lines.push(`- \"${r}\"`);\n      }\n    }\n\n    return lines.join('\\n');\n  }\n}\n","import { AgentRegistry } from '../agents/registry.js';\nimport type { AgentAdapter } from '../agents/adapter.js';\nimport { PROMPT_PREVIEW_CHARS } from '../constants.js';\nimport fs from 'node:fs';\n\n// Re-export TranscriptTurn from its canonical home in agents/adapter.ts\nexport type { TranscriptTurn } from '../agents/adapter.js';\nimport type { TranscriptTurn } from '../agents/adapter.js';\n\ninterface TranscriptConfig {\n  /** Additional agent adapters to register (useful for testing or custom agents) */\n  additionalAdapters?: AgentAdapter[];\n}\n\nexport class TranscriptMiner {\n  private registry: AgentRegistry;\n\n  constructor(config?: TranscriptConfig) {\n    this.registry = new AgentRegistry(config?.additionalAdapters);\n  }\n\n  /**\n   * Extract all conversation turns for a session.\n   * Convenience wrapper — delegates to getAllTurnsWithSource.\n   */\n  getAllTurns(sessionId: string): TranscriptTurn[] {\n    return this.getAllTurnsWithSource(sessionId).turns;\n  }\n\n  /**\n   * Extract turns using the hook-provided transcript path first (fast, no scanning),\n   * then fall back to adapter registry scanning if the path isn't provided.\n   */\n  getAllTurnsWithSource(sessionId: string, transcriptPath?: string): { turns: TranscriptTurn[]; source: string } {\n    // Primary: use the path provided by the hook (no directory scanning needed)\n    if (transcriptPath) {\n      const result = this.registry.parseTurnsFromPath(transcriptPath);\n      if (result) return result;\n    }\n\n    // Fallback: scan known agent directories\n    const result = this.registry.getTranscriptTurns(sessionId);\n    if (result) return result;\n    return { turns: [], source: 'none' };\n  }\n}\n\n/**\n * Build turns from buffer events — the fallback when no agent transcript is available.\n * Buffer events come from hooks (user_prompt, tool_use) and lack AI responses.\n * Turns will have prompts and tool counts but no aiResponse.\n */\nexport function extractTurnsFromBuffer(events: Array<Record<string, unknown>>): TranscriptTurn[] {\n  const turns: TranscriptTurn[] = [];\n  let current: TranscriptTurn | null = null;\n\n  for (const event of events) {\n    const type = event.type as string;\n    if (type === 'user_prompt') {\n      if (current) turns.push(current);\n      current = {\n        prompt: String(event.prompt ?? '').slice(0, PROMPT_PREVIEW_CHARS),\n        toolCount: 0,\n        timestamp: String(event.timestamp ?? new Date().toISOString()),\n      };\n    } else if (type === 'tool_use') {\n      if (current) current.toolCount++;\n    }\n  }\n  if (current) turns.push(current);\n  return turns;\n}\n","import { formatSporeBody } from '../obsidian/formatter.js';\nimport { sessionNoteId } from './session-id.js';\nimport { indexNote } from '../index/rebuild.js';\nimport type { Observation } from '../daemon/processor.js';\nimport type { VaultWriter } from './writer.js';\nimport type { MycoIndex } from '../index/sqlite.js';\n\nexport interface WrittenNote {\n  id: string;\n  path: string;\n  observation: Observation;\n}\n\nexport function writeObservationNotes(\n  observations: Observation[],\n  sessionId: string,\n  writer: VaultWriter,\n  index: MycoIndex,\n  vaultDir: string,\n): WrittenNote[] {\n  const results: WrittenNote[] = [];\n\n  for (const obs of observations) {\n    const obsId = `${obs.type}-${sessionId.slice(-6)}-${Date.now()}`;\n    const body = formatSporeBody({\n      title: obs.title,\n      observationType: obs.type,\n      content: obs.content,\n      sessionId,\n      root_cause: obs.root_cause,\n      fix: obs.fix,\n      rationale: obs.rationale,\n      alternatives_rejected: obs.alternatives_rejected,\n      gained: obs.gained,\n      sacrificed: obs.sacrificed,\n      tags: obs.tags,\n    });\n    const relativePath = writer.writeSpore({\n      id: obsId,\n      observation_type: obs.type,\n      session: sessionNoteId(sessionId),\n      tags: obs.tags,\n      content: body,\n    });\n    indexNote(index, vaultDir, relativePath);\n    results.push({ id: obsId, path: relativePath, observation: obs });\n  }\n\n  return 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package/dist/{chunk-ZBNT6E22.js → chunk-ZCBL5HER.js}

@@ -1,7 +1,7 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   STDIN_TIMEOUT_MS
-} from "./chunk-7VPJK56U.js";
+} from "./chunk-JBD5KP5G.js";
 
 // src/hooks/read-stdin.ts
 function readStdin() {
@@ -18,4 +18,4 @@ function readStdin() {
 export {
   readStdin
 };
-//# sourceMappingURL=chunk-ZBNT6E22.js.map
+//# sourceMappingURL=chunk-ZCBL5HER.js.map