@goondocks/myco 0.21.0 → 0.21.2

package/dist/chunk-NGROSFOH.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/symbionts/manifest-schema.ts","../src/symbionts/detect.ts"],"sourcesContent":["import { z } from 'zod';\n\n/**\n * Declarative capture rules owned per-symbiont in its YAML manifest.\n *\n * Rules let each symbiont describe how Myco should filter or rewrite\n * captured events *without* adding symbiont-specific branches inside\n * the generic hook handlers. The hook loads the rules, a generic\n * evaluator decides the action, and the hook acts on the result.\n *\n * Condition types (in `when`):\n *   - `transcript_path_missing`: structural. Fires when the hook's\n *     transcript_path field is absent/empty. A legitimate user-facing\n *     session records a transcript; an ephemeral sub-invocation (e.g.,\n *     an agent's internal title-generation call) does not. Preferred\n *     over text matching because it doesn't drift as UIs evolve.\n *   - `transcript_meta_field_equals`: structural. Fires when a dot-path\n *     field in the transcript's first JSON line equals a specific scalar\n *     value (for example, `source = \"exec\"`). Use for source-kind or mode\n *     filters that are stable in transcript metadata but not represented\n *     by field presence alone.\n *   - `prompt_starts_with` / `prompt_contains`: text fallback. Use\n *     when no structural signal is available. Document the upgrade path\n *     in the YAML so future maintainers can replace it when a better\n *     signal appears.\n *\n * Scope semantics:\n *   - `this_agent` (default): rule fires only when the detected agent\n *     matches the manifest that owns the rule. Use for behavior that\n *     is specific to the symbiont and can rely on detection working.\n *   - `any_agent`: rule fires regardless of detected agent. Use for\n *     patterns where detection itself might fail — e.g., an internal\n *     sub-invocation that omits the fields agent detection keys on.\n *\n * Events:\n *   - `session_start`: fires on SessionStart, before any prompts or\n *     tools are captured. The same rules are also reusable at later\n *     lifecycle boundaries that could still materialize a session row\n *     (for example, transcript-backed stop processing after a missed\n *     SessionStart). This is the durable \"session capture rules\"\n *     contract for every symbiont.\n *   - `user_prompt`: fires on UserPromptSubmit. Safety net for anything\n *     that slips past session_start, and the only layer where\n *     `rewrite_prompt` makes sense (prompt text doesn't exist until\n *     the prompt is submitted).\n *\n * Actions:\n *   - `drop`: discard the event entirely. For session_start, the hook\n *     skips registering the session row. For user_prompt, the hook\n *     skips posting the event and cascade-deletes any session row that\n *     may have been registered before the drop rule could fire.\n *   - `rewrite_prompt`: replace the captured prompt with the substring\n *     after `extract_after`. Only valid for `user_prompt` events.\n */\nconst CaptureRuleSchema = z.object({\n  event: z.enum(['session_start', 'user_prompt']),\n  scope: z.enum(['this_agent', 'any_agent']).default('this_agent'),\n  when: z.object({\n    prompt_starts_with: z.string().optional(),\n    prompt_contains: z.string().optional(),\n    /** Structural: fires when transcript_path is absent or empty. */\n    transcript_path_missing: z.boolean().optional(),\n    /**\n     * Structural: fires when a dot-path field exists (and is truthy) in the\n     * transcript's first JSON line (session_meta). Use for detecting sub-agent\n     * sessions that have real transcript files but are not user-initiated.\n     *\n     * Example: `source.subagent` matches a Codex thread-spawn session whose\n     * session_meta has `\"source\": {\"subagent\": {...}}` but would NOT match\n     * a user session with `\"source\": \"vscode\"`.\n     *\n     * The hook handler reads the transcript and passes the parsed meta to\n     * the evaluator — the evaluator itself does no file I/O.\n     */\n    transcript_meta_field_exists: z.string().optional(),\n    /**\n     * Structural: fires when a dot-path field in session_meta exactly equals\n     * a scalar value (string / number / boolean / null). Use for stable\n     * source-kind markers like `source = \"exec\"`.\n     */\n    transcript_meta_field_equals: z.object({\n      path: z.string(),\n      value: z.union([z.string(), z.number(), z.boolean(), z.null()]),\n    }).optional(),\n  }),\n  action: z.enum(['drop', 'rewrite_prompt']),\n  /** Short audit string logged when the rule matches (e.g., \"codex-internal-title-gen\"). */\n  reason: z.string().optional(),\n  /** For rewrite_prompt: keep only the substring after this marker (first occurrence). */\n  extract_after: z.string().optional(),\n  /** For rewrite_prompt: trim whitespace from the extracted substring. Default true. */\n  trim: z.boolean().default(true),\n});\n\nexport type CaptureRule = z.infer<typeof CaptureRuleSchema>;\n\nconst CaptureManifestSchema = z.object({\n  planDirs: z.array(z.string()).default([]),\n  planTags: z.array(z.string()).default([]),\n  rules: z.array(CaptureRuleSchema).default([]),\n});\n\nconst RegistrationSchema = z.object({\n  hooksTarget: z.string().optional(),\n  /**\n   * Format of the hooks target.\n   * - 'json' (default): hooks template is merged into a JSON settings file.\n   * - 'plugin-file': the hooks template is a verbatim file (e.g., an opencode TS plugin)\n   *   copied to hooksTarget without JSON parsing. Used for agents with plugin-based hook\n   *   systems rather than JSON hook entries.\n   */\n  hooksFormat: z.enum(['json', 'plugin-file']).default('json'),\n  /**\n   * Optional file path for a plugin deps package.json. When set, the installer writes\n   * a package.json declaring the plugin SDK dependency so the agent's package manager\n   * (e.g., opencode's Bun) can install it at startup. Preserved on uninstall so\n   * contributors can keep their own deps.\n   */\n  pluginPackageTarget: z.string().optional(),\n  mcpTarget: z.string().optional(),\n  mcpFormat: z.enum(['json', 'toml']).default('json'),\n  /**\n   * Optional working directory injected into the Myco MCP server entry. Values\n   * may use `{projectRoot}` and `{vaultDir}` placeholders, or remain relative\n   * (for example `.` in a project-local config file) when the host agent\n   * resolves paths against the config file location.\n   */\n  mcpCwd: z.string().optional(),\n  /**\n   * Optional env vars injected into the Myco MCP server entry. Values may use\n   * `{projectRoot}` and `{vaultDir}` placeholders so symbionts whose MCP child\n   * starts outside the repo can still anchor Myco to the correct project.\n   */\n  mcpEnv: z.record(z.string(), z.string()).default({}),\n  /**\n   * JSON key under which MCP server entries are stored in the MCP config file.\n   * Defaults to 'mcpServers' (used by Claude Code, Cursor, etc.). opencode uses 'mcp'.\n   */\n  mcpServersKey: z.string().default('mcpServers'),\n  skillsTarget: z.string().optional(),\n  settingsTarget: z.string().optional(),\n  /** Format of the settings file. TOML-format agents (e.g., Codex) emit top-level template keys as TOML sections. */\n  settingsFormat: z.enum(['json', 'toml']).default('json'),\n  /** Instruction file that stubs out to AGENTS.md. Only for agents that don't read AGENTS.md natively. */\n  instructionsFile: z.string().optional(),\n});\n\nexport const SymbiontManifestSchema = z.object({\n  name: z.string(),\n  displayName: z.string(),\n  binary: z.string(),\n  configDir: z.string(),\n  pluginRootEnvVar: z.string(),\n  settingsPath: z.string().optional(),\n  hookFields: z.object({\n    sessionId: z.string(),\n    transcriptPath: z.string(),\n    lastResponse: z.string(),\n    prompt: z.string().default('prompt'),\n    toolName: z.string().default('tool_name'),\n    toolInput: z.string().default('tool_input'),\n    toolOutput: z.string().default('tool_output'),\n    /** Env var fallback for session ID (e.g., GEMINI_SESSION_ID). */\n    sessionIdEnv: z.string().optional(),\n  }),\n  /** Resume command template with {sessionId} placeholder. Omit for IDE-based agents. */\n  resumeCommand: z.string().optional(),\n  capture: CaptureManifestSchema.optional(),\n  registration: RegistrationSchema.optional(),\n});\n\nexport type SymbiontManifest = z.infer<typeof SymbiontManifestSchema>;\nexport type SymbiontRegistration = z.infer<typeof RegistrationSchema>;\n","import { SymbiontManifestSchema, type SymbiontManifest } from './manifest-schema.js';\nimport { findPackageRoot } from '../utils/find-package-root.js';\nimport { execFileSync } from 'node:child_process';\nimport fs from 'node:fs';\nimport path from 'node:path';\nimport YAML from 'yaml';\n\nexport interface DetectedSymbiont {\n  manifest: SymbiontManifest;\n  binaryFound: boolean;\n  configDirFound: boolean;\n}\n\nconst MANIFESTS_SUBDIR = 'symbionts/manifests';\n\n/** Cached manifests — static files that never change at runtime. */\nlet manifestCache: SymbiontManifest[] | null = null;\n\n/** Load all symbiont manifests from the package's dist directory. */\nexport function loadManifests(): SymbiontManifest[] {\n  if (manifestCache) return manifestCache;\n  const candidates = [\n    // Source layout: src/symbionts/detect.ts → src/symbionts/manifests/\n    path.resolve(import.meta.dirname, MANIFESTS_SUBDIR),\n    // Dist layout: dist/src/symbionts/ → dist/src/symbionts/manifests/\n    // (or dist/src/daemon/ → dist/src/symbionts/manifests/)\n    path.resolve(import.meta.dirname, '..', MANIFESTS_SUBDIR),\n    path.resolve(import.meta.dirname, '..', '..', MANIFESTS_SUBDIR),\n    // Chunk layout: dist/chunk-*.js → dist/src/symbionts/manifests/\n    path.resolve(import.meta.dirname, 'src', MANIFESTS_SUBDIR),\n  ];\n\n  for (const dir of candidates) {\n    if (!fs.existsSync(dir)) continue;\n    const files = fs.readdirSync(dir).filter(f => f.endsWith('.yaml'));\n    if (files.length === 0) continue;\n    manifestCache = files.map(f => {\n      const raw = YAML.parse(fs.readFileSync(path.join(dir, f), 'utf-8'));\n      return SymbiontManifestSchema.parse(raw);\n    });\n    return manifestCache;\n  }\n  return [];\n}\n\n/** Check if a binary is available on PATH. */\nfunction isBinaryOnPath(binary: string): boolean {\n  try {\n    execFileSync('which', [binary], { stdio: 'pipe' });\n    return true;\n  } catch {\n    return false;\n  }\n}\n\n/** Detect which symbionts are available for a project. */\nexport function detectSymbionts(projectRoot: string): DetectedSymbiont[] {\n  const manifests = loadManifests();\n  return manifests.map(manifest => ({\n    manifest,\n    binaryFound: isBinaryOnPath(manifest.binary),\n    configDirFound: fs.existsSync(path.join(projectRoot, manifest.configDir)),\n  })).filter(d => d.binaryFound || d.configDirFound);\n}\n\n/** Find the Myco package root (where package.json lives). */\nexport function resolvePackageRoot(): string {\n  return findPackageRoot(import.meta.dirname) ?? 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package/dist/chunk-P66DLD6G.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/hooks/client.ts"],"sourcesContent":["import fs from 'node:fs';\nimport path from 'node:path';\nimport { spawn } from 'node:child_process';\nimport { DAEMON_CLIENT_TIMEOUT_MS, DAEMON_HEALTH_CHECK_TIMEOUT_MS, DAEMON_HEALTH_RETRY_DELAYS, DAEMON_STALE_GRACE_PERIOD_MS } from '../constants.js';\nimport { getPluginVersion } from '../version.js';\n\ninterface DaemonInfo {\n  pid: number;\n  port: number;\n}\n\n/**\n * Resolve the CLI entry point for spawning daemon processes.\n * Uses process.argv[1] so the daemon restarts from the same binary\n * (myco-dev vs global myco) that launched the current process.\n */\nexport function resolveCliEntryPath(): { execPath: string; cliEntry: string } {\n  return { execPath: process.execPath, cliEntry: process.argv[1] };\n}\n\ninterface HealthResponse {\n  myco: boolean;\n  version?: string;\n}\n\ninterface ClientResult {\n  ok: boolean;\n  data?: any;\n}\n\n/**\n * Attempt to parse a non-ok response body as JSON so callers can surface\n * the daemon's structured error envelope (e.g. `{error: {code, message}}`).\n * Returns `undefined` if the body is empty, not JSON, or otherwise fails to\n * parse — callers that ignore `data` on failure still work unchanged.\n */\nasync function parseErrorBody(res: Response): Promise<unknown> {\n  try {\n    return await res.json();\n  } catch {\n    return undefined;\n  }\n}\n\nexport class DaemonClient {\n  private vaultDir: string;\n\n  constructor(vaultDir: string) {\n    this.vaultDir = vaultDir;\n  }\n\n  async post(endpoint: string, body: unknown): Promise<ClientResult> {\n    try {\n      const info = this.readDaemonJson();\n      if (!info) return { ok: false };\n\n      const res = await fetch(`http://127.0.0.1:${info.port}${endpoint}`, {\n        method: 'POST',\n        headers: { 'Content-Type': 'application/json' },\n        body: JSON.stringify(body),\n        signal: AbortSignal.timeout(DAEMON_CLIENT_TIMEOUT_MS),\n      });\n\n      if (!res.ok) return { ok: false, data: await parseErrorBody(res) };\n      const data = await res.json();\n      return { ok: true, data };\n    } catch {\n      return { ok: false };\n    }\n  }\n\n  async put(endpoint: string, body: unknown): Promise<ClientResult> {\n    try {\n      const info = this.readDaemonJson();\n      if (!info) return { ok: false };\n\n      const res = await fetch(`http://127.0.0.1:${info.port}${endpoint}`, {\n        method: 'PUT',\n        headers: { 'Content-Type': 'application/json' },\n        body: JSON.stringify(body),\n        signal: AbortSignal.timeout(DAEMON_CLIENT_TIMEOUT_MS),\n      });\n\n      if (!res.ok) return { ok: false, data: await parseErrorBody(res) };\n      const data = await res.json();\n      return { ok: true, data };\n    } catch {\n      return { ok: false };\n    }\n  }\n\n  async get(endpoint: string): Promise<ClientResult> {\n    try {\n      const info = this.readDaemonJson();\n      if (!info) return { ok: false };\n\n      const res = await fetch(`http://127.0.0.1:${info.port}${endpoint}`, {\n        signal: AbortSignal.timeout(DAEMON_CLIENT_TIMEOUT_MS),\n      });\n\n      if (!res.ok) return { ok: false, data: await parseErrorBody(res) };\n      const data = await res.json();\n      return { ok: true, data };\n    } catch {\n      return { ok: false };\n    }\n  }\n\n  async delete(endpoint: string, body?: unknown): Promise<ClientResult> {\n    try {\n      const info = this.readDaemonJson();\n      if (!info) return { ok: false };\n\n      const init: RequestInit = {\n        method: 'DELETE',\n        signal: AbortSignal.timeout(DAEMON_CLIENT_TIMEOUT_MS),\n      };\n      if (body !== undefined) {\n        init.headers = { 'Content-Type': 'application/json' };\n        init.body = JSON.stringify(body);\n      }\n\n      const res = await fetch(`http://127.0.0.1:${info.port}${endpoint}`, init);\n\n      if (!res.ok) return { ok: false, data: await parseErrorBody(res) };\n      const data = await res.json();\n      return { ok: true, data };\n    } catch {\n      return { ok: false };\n    }\n  }\n\n  async isHealthy(cachedInfo?: DaemonInfo | null): Promise<boolean> {\n    try {\n      const info = cachedInfo ?? this.readDaemonJson();\n      if (!info) return false;\n\n      const res = await fetch(`http://127.0.0.1:${info.port}/health`, {\n        signal: AbortSignal.timeout(DAEMON_HEALTH_CHECK_TIMEOUT_MS),\n      });\n      if (!res.ok) return false;\n      const data = await res.json() as HealthResponse;\n      return data.myco === true;\n    } catch {\n      return false;\n    }\n  }\n\n  /**\n   * Check if the daemon is running a stale version.\n   * Returns true if the daemon's version doesn't match the current plugin version.\n   * Skips the check if daemon.json was written recently (grace period) to prevent\n   * rapid restart loops from concurrent hooks or session reloads.\n   */\n  private async isStale(info: DaemonInfo): Promise<boolean> {\n    try {\n      const jsonPath = path.join(this.vaultDir, 'daemon.json');\n      const stat = fs.statSync(jsonPath);\n      if (Date.now() - stat.mtimeMs < DAEMON_STALE_GRACE_PERIOD_MS) {\n        return false;\n      }\n\n      const res = await fetch(`http://127.0.0.1:${info.port}/health`, {\n        signal: AbortSignal.timeout(DAEMON_HEALTH_CHECK_TIMEOUT_MS),\n      });\n      if (!res.ok) return false;\n      const data = await res.json() as HealthResponse;\n      if (!data.myco) return false;\n\n      // No version in response = old daemon that predates this check\n      if (!data.version) return true;\n\n      return data.version !== getPluginVersion();\n    } catch {\n      return false;\n    }\n  }\n\n  /**\n   * Kill the running daemon process.\n   */\n  private killDaemon(info: DaemonInfo | null): void {\n    try {\n      if (!info) return;\n      process.kill(info.pid, 'SIGTERM');\n    } catch { /* already dead */ }\n    try {\n      fs.unlinkSync(path.join(this.vaultDir, 'daemon.json'));\n    } catch { /* already gone */ }\n  }\n\n  /**\n   * Ensure the daemon is running. Spawns it if unhealthy.\n   * When checkStale is true (default), also restarts a healthy daemon if its\n   * version doesn't match the current plugin version. Use checkStale: false\n   * for hooks that just need the daemon alive (e.g., stop) without triggering\n   * version-driven restarts.\n   */\n  async ensureRunning(opts?: { checkStale?: boolean }): Promise<boolean> {\n    const checkStale = opts?.checkStale ?? true;\n    const info = this.readDaemonJson();\n\n    if (checkStale && info && await this.isStale(info)) {\n      this.killDaemon(info);\n      // Brief pause for port release\n      await new Promise((r) => setTimeout(r, 200));\n    } else if (await this.isHealthy(info)) {\n      return true;\n    }\n\n    this.spawnDaemon();\n\n    for (const delay of DAEMON_HEALTH_RETRY_DELAYS) {\n      await new Promise((r) => setTimeout(r, delay));\n      if (await this.isHealthy()) return true;\n    }\n    return false;\n  }\n\n  spawnDaemon(): void {\n    const { execPath, cliEntry } = resolveCliEntryPath();\n    const child = spawn(execPath, [cliEntry, 'daemon', '--vault', this.vaultDir], {\n      detached: true,\n      stdio: 'ignore',\n 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package/dist/chunk-R2JIJBCL.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../../myco-team/src/cli.ts","../src/config/secrets.ts","../../myco-deploy/src/cloudflare.ts","../../myco-deploy/src/local-config.ts"],"sourcesContent":["/**\n * CLI team commands — provision and manage Cloudflare team sync infrastructure.\n *\n * `myco team init`    — Provision D1 database, Vectorize index, deploy worker.\n * `myco team upgrade` — Redeploy worker with updated source.\n */\n\nimport crypto from 'node:crypto';\nimport fs from 'node:fs';\nimport path from 'node:path';\nimport { fileURLToPath } from 'node:url';\nimport { CONFIG_FILENAME, loadConfig, updateTeamConfig } from '@myco/config/loader.js';\nimport { writeSecret, readSecrets } from '@myco/config/secrets.js';\nimport { WRANGLER_COMMAND_TIMEOUT_MS, TEAM_API_KEY_SECRET, TEAM_MCP_TOKEN_SECRET } from '@myco/constants.js';\nimport { SCHEMA_VERSION } from '@myco/db/schema.js';\nimport {\n  extractJsonArray,\n  installDeploymentDeps,\n  maskSecret,\n  parseD1Id,\n  parseKvNamespaceId,\n  parseWorkerUrl,\n  readJsonConfig,\n  resolveHomeConfigPath,\n  resolveVaultConfigPath,\n  runWrangler,\n  stageDeploymentDir,\n  writeJsonConfig,\n} from '@myco-deploy/index.js';\n\ndeclare const __MYCO_TEAM_VERSION__: string;\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Number of random bytes for API key generation. */\nconst API_KEY_BYTES = 32;\n\n/** Vectorize index dimensions (must match the embedding model). */\nconst VECTORIZE_DIMENSIONS = '1024';\n\n/** Vectorize distance metric. */\nconst VECTORIZE_METRIC = 'cosine';\n\n/** Prefix for team resource names. */\nconst TEAM_RESOURCE_PREFIX = 'myco-team';\n\n/** Length of the project hash suffix for unique resource naming. */\nconst PROJECT_HASH_LENGTH = 8;\n\n\n/** Source directory for worker files (relative to package root). */\nconst WORKER_SOURCE_DIR = 'worker';\n\n/** Team sync state directory within the vault. */\nconst TEAM_STATE_DIR = 'team';\nconst TEAM_DEPLOY_DIR = 'worker';\nconst TEAM_CONFIG_FILE = 'config.json';\nconst LEGACY_TEAM_CONFIG_DIR = '.myco-team';\nconst LEGACY_TEAM_DEPLOY_DIR = '.team-worker';\nconst TEAM_CONFIG_VERSION = 1;\nconst TEAM_MCP_ROTATION_RETRY_ATTEMPTS = 10;\nconst TEAM_MCP_ROTATION_RETRY_DELAY_MS = 1500;\n\n/** Regex to match wrangler.toml name field. */\nconst TOML_NAME_REGEX = /^name\\s*=\\s*\"[^\"]*\"/m;\n\n/** Regex to match wrangler.toml D1 placeholder. */\nconst TOML_D1_PLACEHOLDER_REGEX = /<YOUR_D1_DATABASE_ID>/g;\n\n/** Regex to match wrangler.toml database_name field. */\nconst TOML_DB_NAME_REGEX = /database_name\\s*=\\s*\"[^\"]*\"/g;\n\n/** Regex to match wrangler.toml index_name field. */\nconst TOML_INDEX_NAME_REGEX = /index_name\\s*=\\s*\"[^\"]*\"/g;\n\n/** Regex to match wrangler.toml team package version placeholder. */\nconst TOML_TEAM_PACKAGE_VERSION_REGEX = /MYCO_TEAM_PACKAGE_VERSION\\s*=\\s*\"[^\"]*\"/g;\n\n/** Regex to match wrangler.toml Myco schema version placeholder. */\nconst TOML_MYCO_SCHEMA_VERSION_REGEX = /MYCO_SCHEMA_VERSION\\s*=\\s*\"[^\"]*\"/g;\n\n/** Regex to match database_id in existing wrangler.toml. */\nconst TOML_DB_ID_REGEX = /database_id\\s*=\\s*\"([^\"]+)\"/;\n\n/** Regex to match wrangler.toml KV namespace placeholder. */\nconst TOML_KV_PLACEHOLDER_REGEX = /<YOUR_KV_NAMESPACE_ID>/g;\n\n/** Regex to extract the KV namespace ID from an existing wrangler.toml. */\nconst TOML_KV_ID_REGEX = /\\[\\[kv_namespaces\\]\\][\\s\\S]*?id\\s*=\\s*\"([0-9a-f]+)\"/;\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Generate a project hash from vault dir for unique resource naming. */\nfunction projectHash(vaultDir: string): string {\n  const hash = crypto.createHash('sha256').update(vaultDir).digest('hex');\n  return hash.slice(0, PROJECT_HASH_LENGTH);\n}\n\n/** Build the unique resource name for this project's team infrastructure. */\nfunction resourceName(vaultDir: string): string {\n  return `${TEAM_RESOURCE_PREFIX}-${projectHash(vaultDir)}`;\n}\n\nfunction resolvePackageRoot(): string {\n  const override = process.env.MYCO_TEAM_PACKAGE_ROOT?.trim();\n  if (override) return override;\n  return path.resolve(path.dirname(fileURLToPath(import.meta.url)), '..');\n}\n\nexport function getTeamPackageVersion(): string {\n  if (typeof __MYCO_TEAM_VERSION__ !== 'undefined') {\n    return __MYCO_TEAM_VERSION__;\n  }\n\n  const packageRoot = resolvePackageRoot();\n  const candidatePaths = [\n    path.join(packageRoot, 'package.json'),\n    path.join(path.resolve(path.dirname(fileURLToPath(import.meta.url)), '..'), 'package.json'),\n  ];\n\n  for (const candidatePath of candidatePaths) {\n    if (!fs.existsSync(candidatePath)) continue;\n    const packageJson = JSON.parse(fs.readFileSync(candidatePath, 'utf-8')) as { version?: string };\n    if (packageJson.version) return packageJson.version;\n  }\n\n  return '0.1.0';\n}\n\nfunction getMycoSchemaVersion(): string {\n  return String(SCHEMA_VERSION);\n}\n\nexport interface TeamLocalConfig {\n  worker_name: string;\n  worker_url: string;\n  package_version: string;\n  created_at: string;\n  last_upgraded: string;\n  config_version: number;\n}\n\ninterface LegacyTeamLocalConfig extends TeamLocalConfig {\n  api_key?: string;\n  mcp_token?: string | null;\n  vault_dir?: string;\n}\n\nfunction resolveLocalConfigPath(vaultDir: string): string {\n  return resolveVaultConfigPath(vaultDir, TEAM_STATE_DIR, TEAM_CONFIG_FILE);\n}\n\nfunction resolveLegacyLocalConfigPath(): string {\n  return resolveHomeConfigPath(LEGACY_TEAM_CONFIG_DIR, TEAM_CONFIG_FILE);\n}\n\nfunction resolveDeployDir(vaultDir: string): string {\n  return path.join(vaultDir, TEAM_STATE_DIR, TEAM_DEPLOY_DIR);\n}\n\nfunction resolveLegacyDeployDir(vaultDir: string): string {\n  return path.join(vaultDir, LEGACY_TEAM_DEPLOY_DIR);\n}\n\nfunction writeLocalConfig(vaultDir: string, config: TeamLocalConfig): void {\n  writeJsonConfig(resolveLocalConfigPath(vaultDir), config);\n}\n\nfunction migrateLegacyDeployDir(vaultDir: string): void {\n  const legacyDeployDir = resolveLegacyDeployDir(vaultDir);\n  const nextDeployDir = resolveDeployDir(vaultDir);\n  if (!fs.existsSync(legacyDeployDir) || fs.existsSync(nextDeployDir)) return;\n\n  fs.mkdirSync(path.dirname(nextDeployDir), { recursive: true });\n  fs.renameSync(legacyDeployDir, nextDeployDir);\n}\n\nfunction readLocalConfig(vaultDir: string): TeamLocalConfig | null {\n  const config = readJsonConfig<TeamLocalConfig>(resolveLocalConfigPath(vaultDir));\n  if (config) {\n    migrateLegacyDeployDir(vaultDir);\n    return config;\n  }\n\n  const legacyConfig = readJsonConfig<LegacyTeamLocalConfig>(resolveLegacyLocalConfigPath());\n  if (!legacyConfig) return null;\n  if (legacyConfig.vault_dir && legacyConfig.vault_dir !== vaultDir) return null;\n\n  const migrated: TeamLocalConfig = {\n    worker_name: legacyConfig.worker_name,\n    worker_url: legacyConfig.worker_url,\n    package_version: legacyConfig.package_version,\n    created_at: legacyConfig.created_at,\n    last_upgraded: legacyConfig.last_upgraded,\n    config_version: legacyConfig.config_version ?? TEAM_CONFIG_VERSION,\n  };\n  writeLocalConfig(vaultDir, migrated);\n  if (legacyConfig.api_key) writeSecret(vaultDir, TEAM_API_KEY_SECRET, legacyConfig.api_key);\n  if (legacyConfig.mcp_token) writeSecret(vaultDir, TEAM_MCP_TOKEN_SECRET, legacyConfig.mcp_token);\n  migrateLegacyDeployDir(vaultDir);\n  return migrated;\n}\n\nfunction requireLocalConfig(vaultDir: string): TeamLocalConfig {\n  const config = readLocalConfig(vaultDir);\n  if (config) return config;\n\n  console.error(`No local myco-team config found at ${resolveLocalConfigPath(vaultDir)}`);\n  process.exit(1);\n}\n\nfunction delay(ms: number): Promise<void> {\n  return new Promise((resolve) => setTimeout(resolve, ms));\n}\n\nasync function rotateMcpTokenWithRetry(workerUrl: string, apiKey: string): Promise<string> {\n  let lastError: Error | null = null;\n\n  for (let attempt = 1; attempt <= TEAM_MCP_ROTATION_RETRY_ATTEMPTS; attempt += 1) {\n    try {\n      return await rotateMcpTokenForWorker(workerUrl, apiKey);\n    } catch (error) {\n      lastError = error as Error;\n      const isRetryable =\n        lastError.message.includes('401') &&\n        lastError.message.includes('Invalid API key') &&\n        attempt < TEAM_MCP_ROTATION_RETRY_ATTEMPTS;\n      if (!isRetryable) {\n        throw lastError;\n      }\n      await delay(TEAM_MCP_ROTATION_RETRY_DELAY_MS);\n    }\n  }\n\n  throw lastError ?? new Error('MCP token rotation failed');\n}\n\n/** Run a wrangler command and return stdout. Throws on failure, surfacing stderr. */\nfunction wrangler(args: string[], options?: { cwd?: string }): string {\n  return runWrangler(args, { cwd: options?.cwd, timeoutMs: WRANGLER_COMMAND_TIMEOUT_MS });\n}\n\n/** Find the worker source directory. Checks dist layout first (installed), then source layout (dev). */\nfunction locateWorkerSource(): string {\n  const root = resolvePackageRoot();\n  const distPath = path.join(root, 'dist', WORKER_SOURCE_DIR);\n  if (fs.existsSync(distPath)) return distPath;\n  const srcPath = path.join(root, WORKER_SOURCE_DIR);\n  if (fs.existsSync(srcPath)) return srcPath;\n  throw new Error(`Cannot find ${WORKER_SOURCE_DIR} — are you running from the myco-team package?`);\n}\n\n/**\n * Copy worker source to the vault deployment directory and patch wrangler.toml\n * with actual D1 database ID and resource names.\n */\nfunction prepareDeployDir(vaultDir: string, d1Id: string, kvId: string): string {\n  const srcDir = locateWorkerSource();\n  const deployDir = resolveDeployDir(vaultDir);\n  const name = resourceName(vaultDir);\n  return stageDeploymentDir({\n    sourceDir: srcDir,\n    deployDir,\n    reset: true,\n    textPatches: [{\n      filePath: 'wrangler.toml',\n      transforms: [\n        (toml) => toml.replace(TOML_NAME_REGEX, `name = \"${name}\"`),\n        (toml) => toml.replace(TOML_D1_PLACEHOLDER_REGEX, d1Id),\n        (toml) => toml.replace(TOML_DB_NAME_REGEX, `database_name = \"${name}\"`),\n        (toml) => toml.replace(TOML_INDEX_NAME_REGEX, `index_name = \"${name}-vectors\"`),\n        (toml) => toml.replace(TOML_KV_PLACEHOLDER_REGEX, kvId),\n        (toml) => toml.replace(TOML_TEAM_PACKAGE_VERSION_REGEX, `MYCO_TEAM_PACKAGE_VERSION = \"${getTeamPackageVersion()}\"`),\n        (toml) => toml.replace(TOML_MYCO_SCHEMA_VERSION_REGEX, `MYCO_SCHEMA_VERSION = \"${getMycoSchemaVersion()}\"`),\n      ],\n    }],\n    installDepsTimeoutMs: WRANGLER_COMMAND_TIMEOUT_MS * 3,\n  });\n}\n\n/** Ensure a KV namespace exists for this project. Returns the namespace ID. */\nfunction ensureKvNamespace(name: string): string {\n  const kvName = `${name}-secrets`;\n  const lookupExisting = (): string => {\n    const listOutput = wrangler(['kv', 'namespace', 'list']);\n    const namespaces = extractJsonArray(listOutput) as Array<{ id: string; title: string }>;\n    // Wrangler sometimes rewrites hyphens to underscores in titles\n    const normalize = (s: string) => s.replace(/[-_]/g, '');\n    const target = normalize(kvName);\n    const existing = namespaces.find((ns) => normalize(ns.title) === target || normalize(ns.title).endsWith(target));\n    if (!existing) throw new Error(`KV namespace \"${kvName}\" not found in list of ${namespaces.length} namespaces`);\n    return existing.id;\n  };\n\n  try {\n    const output = wrangler(['kv', 'namespace', 'create', kvName]);\n    return parseKvNamespaceId(output);\n    // Created successfully but we couldn't parse — fall back to list lookup\n  } catch (err) {\n    const errMsg = (err as Error).message;\n    if (errMsg.includes('already exists') || errMsg.includes('duplicate') || errMsg.includes('same title')) {\n      return lookupExisting();\n    }\n    throw err;\n  }\n}\n\nasync function rotateMcpTokenForWorker(workerUrl: string, apiKey: string): Promise<string> {\n  const response = await fetch(`${workerUrl}/mcp/rotate`, {\n    method: 'POST',\n    headers: {\n      Authorization: `Bearer ${apiKey}`,\n      'Content-Type': 'application/json',\n    },\n  });\n  if (!response.ok) {\n    throw new Error(`MCP token rotation failed: ${response.status} ${await response.text()}`);\n  }\n  const body = await response.json() as { token?: string };\n  if (!body.token) {\n    throw new Error('MCP token rotation response did not include a token');\n  }\n  return body.token;\n}\n\n// ---------------------------------------------------------------------------\n// Commands\n// ---------------------------------------------------------------------------\n\nexport async function teamInit(vaultDir: string): Promise<void> {\n  console.log('Provisioning team sync infrastructure...\\n');\n\n  // 1. Check for wrangler\n  try {\n    const version = wrangler(['--version']).trim();\n    console.log(`wrangler: ${version}`);\n  } catch {\n    console.error('Error: wrangler CLI not found. Install it with: npm install -g wrangler');\n    process.exit(1);\n  }\n\n  // 2. Check auth\n  try {\n    wrangler(['whoami']);\n    console.log('Cloudflare auth: OK\\n');\n  } catch {\n    console.error('Error: Not authenticated with Cloudflare. Run: wrangler login');\n    process.exit(1);\n  }\n\n  const name = resourceName(vaultDir);\n  console.log(`Resource name: ${name}\\n`);\n\n  // 3. Create D1 database (or reuse existing)\n  console.log('Creating D1 database...');\n  let d1Id: string;\n  try {\n    const d1Output = wrangler(['d1', 'create', name]);\n    d1Id = parseD1Id(d1Output);\n    console.log(`D1 database created: ${d1Id}\\n`);\n  } catch (err) {\n    const errMsg = (err as Error).message;\n    if (errMsg.includes('already exists')) {\n      console.log('D1 database already exists, looking up ID...');\n      const listOutput = wrangler(['d1', 'list', '--json']);\n      const databases = JSON.parse(listOutput) as Array<{ name: string; uuid: string }>;\n      const existing = databases.find((db) => db.name === name);\n      if (!existing) {\n        console.error(`D1 database \"${name}\" reported as existing but not found in list`);\n        process.exit(1);\n      }\n      d1Id = existing.uuid;\n      console.log(`Reusing D1 database: ${d1Id}\\n`);\n    } else {\n      console.error(`Failed to create D1 database: ${errMsg}`);\n      process.exit(1);\n    }\n  }\n\n  // 4. Create Vectorize index (or reuse existing)\n  console.log('Creating Vectorize index...');\n  try {\n    wrangler(['vectorize', 'create', `${name}-vectors`, '--dimensions', VECTORIZE_DIMENSIONS, '--metric', VECTORIZE_METRIC]);\n    console.log('Vectorize index created\\n');\n  } catch (err) {\n    const errMsg = (err as Error).message;\n    if (errMsg.includes('already exists') || errMsg.includes('duplicate_name')) {\n      console.log('Vectorize index already exists, reusing\\n');\n    } else {\n      console.error(`Failed to create Vectorize index: ${errMsg}`);\n      process.exit(1);\n    }\n  }\n\n  // 5. Create KV namespace for runtime secrets (MCP tokens)\n  console.log('Creating KV namespace for secrets...');\n  let kvId: string;\n  try {\n    kvId = ensureKvNamespace(name);\n    console.log(`KV namespace ready: ${kvId}\\n`);\n  } catch (err) {\n    console.error(`Failed to create KV namespace: ${(err as Error).message}`);\n    process.exit(1);\n  }\n\n  // 6. Generate API key\n  const apiKey = crypto.randomBytes(API_KEY_BYTES).toString('hex');\n\n  // 7. Prepare deployment directory\n  console.log('Preparing worker deployment...');\n  const deployDir = prepareDeployDir(vaultDir, d1Id, kvId);\n\n  // 7. Set API key secret via wrangler\n  console.log('Setting API key secret...');\n  try {\n    runWrangler(['secret', 'put', TEAM_API_KEY_SECRET, '--name', name], {\n      cwd: deployDir,\n      input: apiKey,\n      timeoutMs: WRANGLER_COMMAND_TIMEOUT_MS,\n    });\n    console.log('Secret set\\n');\n  } catch (err) {\n    console.error(`Failed to set API key secret: ${(err as Error).message}`);\n    process.exit(1);\n  }\n\n  // 8. Deploy worker\n  console.log('Deploying worker...');\n  let workerUrl: string;\n  try {\n    const deployOutput = wrangler(['deploy'], { cwd: deployDir });\n    workerUrl = parseWorkerUrl(deployOutput);\n    console.log(`Worker deployed: ${workerUrl}\\n`);\n  } catch (err) {\n    console.error(`Failed to deploy worker: ${(err as Error).message}`);\n    process.exit(1);\n  }\n\n  // 9. Seed team config in the Worker\n  console.log('Setting team configuration...');\n  try {\n    const { getMachineId } = await import('@myco/daemon/machine-id.js');\n    const creatorMachineId = await getMachineId(vaultDir);\n    await fetch(`${workerUrl}/config`, {\n      method: 'PUT',\n      headers: { 'Authorization': `Bearer ${apiKey}`, 'Content-Type': 'application/json' },\n      body: JSON.stringify({\n        team_name: name,\n        embedding_model: '@cf/baai/bge-m3',\n        embedding_dimensions: '1024',\n        created_at: String(Math.floor(Date.now() / 1000)),\n        created_by: creatorMachineId,\n      }),\n    });\n    console.log('Team config saved\\n');\n  } catch {\n    console.log('Warning: could not seed team config (non-fatal)\\n');\n  }\n\n  let mcpToken: string | null = null;\n  try {\n    mcpToken = await rotateMcpTokenForWorker(workerUrl, apiKey);\n  } catch {\n    // Non-fatal. The daemon can also fetch the token later through /connect.\n  }\n\n  // 10. Save config and API key locally\n  updateTeamConfig(vaultDir, {\n    enabled: true,\n    worker_url: workerUrl,\n  });\n  writeSecret(vaultDir, TEAM_API_KEY_SECRET, apiKey);\n  if (mcpToken) writeSecret(vaultDir, TEAM_MCP_TOKEN_SECRET, mcpToken);\n  writeLocalConfig(vaultDir, {\n    worker_name: name,\n    worker_url: workerUrl,\n    package_version: getTeamPackageVersion(),\n    created_at: new Date().toISOString(),\n    last_upgraded: new Date().toISOString(),\n    config_version: TEAM_CONFIG_VERSION,\n  });\n\n  console.log('Team sync configured!\\n');\n  console.log(`  URL:     ${workerUrl}`);\n  console.log(`  API Key: ${apiKey.slice(0, 8)}...${apiKey.slice(-4)}`);\n  if (mcpToken) {\n    console.log(`  MCP:     ${mcpToken.slice(0, 8)}...${mcpToken.slice(-4)}`);\n  }\n  console.log('\\nShare the URL and API key with teammates so they can connect.');\n}\n\n// ---------------------------------------------------------------------------\n// Shared upgrade logic (used by CLI and daemon API)\n// ---------------------------------------------------------------------------\n\nexport interface UpgradeResult {\n  success: boolean;\n  worker_url?: string;\n  version?: string;\n  error?: string;\n}\n\n/**\n * Upgrade the team sync worker: re-copy source, patch config, redeploy.\n * Returns a result instead of calling process.exit — safe for both CLI and daemon.\n */\nexport function upgradeWorker(vaultDir: string): UpgradeResult {\n  const config = loadConfig(vaultDir);\n  if (!config.team.worker_url) {\n    return { success: false, error: 'No team sync configured. Run: myco team init' };\n  }\n\n  migrateLegacyDeployDir(vaultDir);\n  const deployDir = resolveDeployDir(vaultDir);\n  const tomlPath = path.join(deployDir, 'wrangler.toml');\n\n  if (!fs.existsSync(tomlPath)) {\n    return { success: false, error: 'No deployment directory found. Run: myco team init' };\n  }\n\n  // Read ALL existing resource identifiers from current wrangler.toml.\n  const existingToml = fs.readFileSync(tomlPath, 'utf-8');\n  const d1Match = existingToml.match(TOML_DB_ID_REGEX);\n  if (!d1Match || d1Match[1] === '<YOUR_D1_DATABASE_ID>') {\n    return { success: false, error: 'Cannot determine D1 database ID from existing deployment. Run: myco team init' };\n  }\n  const d1Id = d1Match[1];\n\n  const nameMatch = existingToml.match(/^name\\s*=\\s*\"([^\"]*)\"/m);\n  const dbNameMatch = existingToml.match(/database_name\\s*=\\s*\"([^\"]*)\"/);\n  const indexNameMatch = existingToml.match(/index_name\\s*=\\s*\"([^\"]*)\"/);\n  const workerName = nameMatch?.[1] ?? resourceName(vaultDir);\n\n  // KV namespace may not exist on older deployments — create or reuse.\n  const kvMatch = existingToml.match(TOML_KV_ID_REGEX);\n  let kvId: string;\n  if (kvMatch) {\n    kvId = kvMatch[1];\n  } else {\n    try {\n      kvId = ensureKvNamespace(workerName);\n    } catch (err) {\n      return { success: false, error: `Failed to provision KV namespace: ${(err as Error).message}` };\n    }\n  }\n\n  try {\n    stageDeploymentDir({\n      sourceDir: locateWorkerSource(),\n      deployDir,\n      textPatches: [{\n        filePath: 'wrangler.toml',\n        transforms: [\n          (toml) => toml.replace(TOML_NAME_REGEX, `name = \"${workerName}\"`),\n          (toml) => toml.replace(TOML_D1_PLACEHOLDER_REGEX, d1Id),\n          (toml) => toml.replace(TOML_DB_NAME_REGEX, `database_name = \"${dbNameMatch?.[1] ?? workerName}\"`),\n          (toml) => toml.replace(TOML_INDEX_NAME_REGEX, `index_name = \"${indexNameMatch?.[1] ?? `${workerName}-vectors`}\"`),\n          (toml) => toml.replace(TOML_KV_PLACEHOLDER_REGEX, kvId),\n          (toml) => toml.replace(TOML_TEAM_PACKAGE_VERSION_REGEX, `MYCO_TEAM_PACKAGE_VERSION = \"${getTeamPackageVersion()}\"`),\n          (toml) => toml.replace(TOML_MYCO_SCHEMA_VERSION_REGEX, `MYCO_SCHEMA_VERSION = \"${getMycoSchemaVersion()}\"`),\n        ],\n      }],\n      installDepsTimeoutMs: WRANGLER_COMMAND_TIMEOUT_MS * 3,\n    });\n  } catch (err) {\n    return { success: false, error: `Failed to install worker dependencies: ${(err as Error).message}` };\n  }\n\n  // Re-set API key secret before deploy (deploy can wipe secrets)\n  const secrets = readSecrets(vaultDir);\n  const apiKey = secrets[TEAM_API_KEY_SECRET];\n  if (apiKey) {\n    try {\n      runWrangler(['secret', 'put', TEAM_API_KEY_SECRET, '--name', workerName], {\n        cwd: deployDir,\n        input: apiKey,\n        timeoutMs: WRANGLER_COMMAND_TIMEOUT_MS,\n      });\n    } catch {\n      // Non-fatal — secret may already be set\n    }\n  }\n\n  // Redeploy\n  try {\n    const deployOutput = wrangler(['deploy'], { cwd: deployDir });\n    const workerUrl = parseWorkerUrl(deployOutput);\n    const version = getTeamPackageVersion();\n\n    updateTeamConfig(vaultDir, {\n      worker_url: workerUrl,\n    });\n    const localConfig = readLocalConfig(vaultDir);\n    if (localConfig) {\n      writeLocalConfig(vaultDir, {\n        ...localConfig,\n        worker_name: workerName,\n        worker_url: workerUrl,\n        package_version: version,\n        last_upgraded: new Date().toISOString(),\n      });\n    }\n\n    return { success: true, worker_url: workerUrl, version };\n  } catch (err) {\n    return { success: false, error: `Failed to deploy worker: ${(err as Error).message}` };\n  }\n}\n\n// ---------------------------------------------------------------------------\n// CLI wrapper\n// ---------------------------------------------------------------------------\n\nexport async function teamUpgrade(vaultDir: string): Promise<void> {\n  console.log('Upgrading team sync worker...\\n');\n  const result = upgradeWorker(vaultDir);\n  if (!result.success) {\n    console.error(result.error);\n    process.exit(1);\n  }\n  console.log(`Worker deployed: ${result.worker_url}`);\n  console.log(`Version: ${result.version}`);\n  console.log('\\nUpgrade complete.');\n}\n\nexport async function teamStatus(vaultDir: string): Promise<void> {\n  const config = requireLocalConfig(vaultDir);\n  const secrets = readSecrets(vaultDir);\n\n  console.log(`Worker:      ${config.worker_name}`);\n  console.log(`URL:         ${config.worker_url}`);\n  console.log(`API Key:     ${maskSecret(secrets[TEAM_API_KEY_SECRET] ?? null)}`);\n  console.log(`MCP Token:   ${maskSecret(secrets[TEAM_MCP_TOKEN_SECRET] ?? null)}`);\n  console.log(`Package v:   ${config.package_version}`);\n  console.log(`Created:     ${config.created_at}`);\n  console.log(`Upgraded:    ${config.last_upgraded}`);\n  console.log(`Config v:    ${config.config_version}`);\n}\n\nexport async function teamRotateTokens(vaultDir: string, which: 'api' | 'mcp' | 'all' = 'all'): Promise<void> {\n  const config = requireLocalConfig(vaultDir);\n  const secrets = readSecrets(vaultDir);\n  let currentApiKey = secrets[TEAM_API_KEY_SECRET] ?? '';\n  let currentMcpToken = secrets[TEAM_MCP_TOKEN_SECRET] ?? null;\n\n  let nextConfig = { ...config };\n\n  if (which === 'api' || which === 'all') {\n    const apiKey = crypto.randomBytes(API_KEY_BYTES).toString('hex');\n    runWrangler(['secret', 'put', TEAM_API_KEY_SECRET, '--name', config.worker_name], {\n      cwd: resolveDeployDir(vaultDir),\n      input: apiKey,\n      timeoutMs: WRANGLER_COMMAND_TIMEOUT_MS,\n    });\n    writeSecret(vaultDir, TEAM_API_KEY_SECRET, apiKey);\n    currentApiKey = apiKey;\n    nextConfig = {\n      ...nextConfig,\n      package_version: getTeamPackageVersion(),\n      last_upgraded: new Date().toISOString(),\n    };\n    writeLocalConfig(vaultDir, nextConfig);\n  }\n\n  if (which === 'mcp' || which === 'all') {\n    try {\n      currentMcpToken = await rotateMcpTokenWithRetry(config.worker_url, currentApiKey);\n      if (currentMcpToken) writeSecret(vaultDir, TEAM_MCP_TOKEN_SECRET, currentMcpToken);\n    } catch (error) {\n      writeLocalConfig(vaultDir, {\n        ...nextConfig,\n        last_upgraded: new Date().toISOString(),\n      });\n      throw new Error(\n        `API key rotation completed, but MCP token rotation failed. Local config was updated to the new API key.\\n${(error as Error).message}`,\n      );\n    }\n  }\n\n  nextConfig.last_upgraded = new Date().toISOString();\n  writeLocalConfig(vaultDir, nextConfig);\n\n  console.log(`API Key:   ${maskSecret(currentApiKey)}`);\n  console.log(`MCP Token: ${maskSecret(currentMcpToken)}`);\n}\n\nexport async function teamDestroy(vaultDir: string): Promise<void> {\n  const config = requireLocalConfig(vaultDir);\n  const errors: string[] = [];\n  const deployDir = resolveDeployDir(vaultDir);\n\n  try {\n    wrangler(['delete', config.worker_name], { cwd: deployDir });\n  } catch (error) {\n    errors.push(`worker delete failed: ${(error as Error).message}`);\n  }\n\n  try {\n    wrangler(['vectorize', 'delete', `${config.worker_name}-vectors`]);\n  } catch (error) {\n    errors.push(`vectorize delete failed: ${(error as Error).message}`);\n  }\n\n  try {\n    const databases = JSON.parse(wrangler(['d1', 'list', '--json'])) as Array<{ name: string; uuid: string }>;\n    const database = databases.find((entry) => entry.name === config.worker_name);\n    if (database) {\n      wrangler(['d1', 'delete', database.name, '--skip-confirmation']);\n    }\n  } catch (error) {\n    errors.push(`d1 delete failed: ${(error as Error).message}`);\n  }\n\n  try {\n    const namespaces = extractJsonArray(wrangler(['kv', 'namespace', 'list'])) as Array<{ id: string; title: string }>;\n    const namespace = namespaces.find((entry) => entry.title === `${config.worker_name}-secrets`);\n    if (namespace) {\n      wrangler(['kv', 'namespace', 'delete', '--namespace-id', namespace.id, '--skip-confirmation']);\n    }\n  } catch (error) {\n    errors.push(`kv delete failed: ${(error as Error).message}`);\n  }\n\n  if (errors.length > 0) {\n    throw new Error(`Team destroy incomplete. Local state preserved for retry.\\n${errors.join('\\n')}`);\n  }\n\n  fs.rmSync(path.join(vaultDir, TEAM_STATE_DIR), { recursive: true, force: true });\n  console.log(`Destroyed local myco-team state for ${config.worker_name}.`);\n}\n","/**\n * Secrets file utilities for API key storage outside git.\n *\n * Secrets are stored in `secrets.env` inside the vault directory.\n * This file is gitignored (see VAULT_GITIGNORE) and never committed.\n * Format: KEY=value, one per line (same as .env).\n */\nimport fs from 'node:fs';\nimport path from 'node:path';\n\nconst SECRETS_FILE = 'secrets.env';\n\n/** Read all secrets from <vault>/secrets.env as key-value pairs. */\nexport function readSecrets(vaultDir: string): Record<string, string> {\n  const secretsPath = path.join(vaultDir, SECRETS_FILE);\n  if (!fs.existsSync(secretsPath)) return {};\n\n  const secrets: Record<string, string> = {};\n  for (const line of fs.readFileSync(secretsPath, 'utf-8').split('\\n')) {\n    const match = line.match(/^\\s*([^#=]+?)\\s*=\\s*(.*?)\\s*$/);\n    if (match) {\n      secrets[match[1]] = match[2];\n    }\n  }\n  return secrets;\n}\n\n/** Write a secret to <vault>/secrets.env, preserving existing entries. */\nexport function writeSecret(vaultDir: string, key: string, value: string): void {\n  const secretsPath = path.join(vaultDir, SECRETS_FILE);\n  const existing = readSecrets(vaultDir);\n  existing[key] = value;\n\n  const content = Object.entries(existing)\n    .map(([k, v]) => `${k}=${v}`)\n    .join('\\n') + '\\n';\n\n  fs.writeFileSync(secretsPath, content, 'utf-8');\n}\n\n/** Remove one or more secrets from <vault>/secrets.env, preserving remaining entries. */\nexport function deleteSecrets(vaultDir: string, keys: string[]): void {\n  const secretsPath = path.join(vaultDir, SECRETS_FILE);\n  if (!fs.existsSync(secretsPath)) return;\n\n  const existing = readSecrets(vaultDir);\n  for (const key of keys) delete existing[key];\n\n  const entries = Object.entries(existing);\n  if (entries.length === 0) {\n    fs.rmSync(secretsPath, { force: true });\n    return;\n  }\n\n  const content = entries\n    .map(([k, v]) => `${k}=${v}`)\n    .join('\\n') + '\\n';\n\n  fs.writeFileSync(secretsPath, content, 'utf-8');\n}\n\n/** Load secrets from <vault>/secrets.env into process.env (without overwriting existing vars). */\nexport function loadSecrets(vaultDir: string): void {\n  const secrets = readSecrets(vaultDir);\n  for (const [key, value] of Object.entries(secrets)) {\n    if (!process.env[key]) {\n      process.env[key] = value;\n    }\n  }\n}\n","import { execFileSync } from 'node:child_process';\nimport fs from 'node:fs';\nimport path from 'node:path';\n\nconst WORKER_URL_REGEX = /(https:\\/\\/[^\\s]+\\.workers\\.dev)/;\nconst D1_ID_JSON_REGEX = /\"database_id\"\\s*:\\s*\"([0-9a-f-]{36})\"/i;\nconst D1_ID_TEXT_REGEX = /id:\\s*([0-9a-f-]{36})/i;\nconst KV_ID_REGEX = /\"id\":\\s*\"([0-9a-f]+)\"/i;\n\nexport interface WranglerOptions {\n  cwd?: string;\n  input?: string;\n  timeoutMs: number;\n}\n\nexport interface TextPatch {\n  filePath: string;\n  transforms: Array<(text: string) => string>;\n}\n\nexport interface StageDeploymentDirOptions {\n  sourceDir: string;\n  deployDir: string;\n  reset?: boolean;\n  extraCopies?: Array<{ sourceDir: string; destinationSubdir: string }>;\n  textPatches?: TextPatch[];\n  installDepsTimeoutMs?: number | null;\n}\n\nexport function buildCommandEnv(): NodeJS.ProcessEnv {\n  const nodeBinDir = path.dirname(process.execPath);\n  const pathValue = process.env.PATH\n    ? `${nodeBinDir}${path.delimiter}${process.env.PATH}`\n    : nodeBinDir;\n  return { ...process.env, PATH: pathValue };\n}\n\nexport function runWrangler(args: string[], options: WranglerOptions): string {\n  try {\n    return execFileSync('wrangler', args, {\n      cwd: options.cwd,\n      env: buildCommandEnv(),\n      input: options.input,\n      encoding: 'utf-8',\n      timeout: options.timeoutMs,\n      stdio: ['pipe', 'pipe', 'pipe'],\n    });\n  } catch (error) {\n    const execError = error as Error & { stderr?: Buffer | string; stdout?: Buffer | string };\n    const stderr = execError.stderr?.toString() ?? '';\n    const stdout = execError.stdout?.toString() ?? 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[]) {\n    fs.cpSync(copy.sourceDir, path.join(options.deployDir, copy.destinationSubdir), { recursive: true });\n  }\n\n  for (const patch of options.textPatches ?? 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package/dist/chunk-VHNRMM4O.js.map

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-{"version":3,"sources":["../src/symbionts/installer.ts","../src/symbionts/toml-helpers.ts","../src/symbionts/settings-merge.ts","../src/symbionts/json-helpers.ts","../src/symbionts/install-helpers.ts"],"sourcesContent":["import type { SymbiontManifest } from './manifest-schema.js';\nimport fs from 'node:fs';\nimport path from 'node:path';\nimport { findTomlSectionEnd, buildTomlMcpSection, upsertTomlSection, removeTomlSectionKeys } from './toml-helpers.js';\nimport { deepMergeSettings, deepRemoveSettings } from './settings-merge.js';\nimport { readJsonFile, writeJsonFile, writeOrDeleteJsonFile } from './json-helpers.js';\nimport { ensureAgentsMd, ensureSymlink, isMycoHookGroup } from './install-helpers.js';\nimport { loadMergedConfig } from '../config/loader.js';\n\n/** Current comment header for Myco-managed .gitignore block. */\nconst GITIGNORE_COMMENT = '# Myco managed (machine-specific)';\n\n/** Legacy comment header — recognized for cleanup during reconciliation. */\nconst GITIGNORE_SKILLS_COMMENT_LEGACY = '# Myco skill symlinks (machine-specific)';\n\n/** Wrangler cache directory created by team sync operations. */\nconst WRANGLER_CACHE_DIR = '.wrangler/';\nconst AGENTS_MANAGED_START = '<!-- myco:managed:start -->';\nconst AGENTS_MANAGED_END = '<!-- myco:managed:end -->';\nconst AGENTS_MANAGED_BLOCK = `${AGENTS_MANAGED_START}\n## Myco Managed Guidance\n\n- When \\`capture.ignore_plan_dirs_in_git\\` is enabled, custom directories in \\`capture.plan_dirs\\` may be intentionally gitignored after capture into Myco.\n- Do not force-add files from intentionally gitignored custom plan directories unless the user explicitly asks.\n${AGENTS_MANAGED_END}\n`;\n\n/** Subdirectory within the package where symbiont templates live. */\nconst TEMPLATES_SUBDIR = 'src/symbionts/templates';\n\n/** Filename of the hook guard template in the templates directory. */\nconst HOOK_GUARD_TEMPLATE_FILENAME = 'myco-run.cjs';\n\n/** Filename when installed into the project .agents/ directory. */\nconst HOOK_GUARD_INSTALLED_FILENAME = 'myco-run.cjs';\n\n/** Project-relative path where the hook guard is installed. */\nconst HOOK_GUARD_PROJECT_PATH = `.agents/${HOOK_GUARD_INSTALLED_FILENAME}`;\n\n/**\n * Legacy guard filename we still delete on install to clean up previous\n * installations that used `.agents/myco-hook.cjs` before the rename.\n */\nconst LEGACY_HOOK_GUARD_PATH = '.agents/myco-hook.cjs';\n\n/** Subdirectory within the package where skills live. */\nconst SKILLS_SUBDIR = 'skills';\n\n/** Canonical cross-agent skills directory. */\nconst CANONICAL_SKILLS_DIR = '.agents/skills';\n\n/** MCP server name used by Myco in all symbiont configurations. */\nexport const MYCO_MCP_SERVER_NAME = 'myco';\nconst MCP_ENV_PROJECT_ROOT_TOKEN = '{projectRoot}';\nconst MCP_ENV_VAULT_DIR_TOKEN = '{vaultDir}';\n\ninterface McpLaunchOverrides {\n  cwd?: string;\n  env: Record<string, string>;\n}\n\n/**\n * Marker substring written into plugin-file hook templates (e.g., opencode's plugin.ts).\n * Uninstall only deletes plugin files whose content contains this marker, so\n * contributors who hand-edit a plugin file without removing the marker are protected.\n */\nconst MYCO_PLUGIN_FILE_MARKER = 'myco:plugin-marker';\n\n/** `hooksFormat` value selecting verbatim plugin-file install over JSON merge. */\nconst HOOKS_FORMAT_PLUGIN_FILE = 'plugin-file';\n\n/** Marker text used to identify unmodified instruction stubs. */\nconst INSTRUCTIONS_STUB_MARKER = 'Edit AGENTS.md, not this file';\n\n/** Start/end markers for the reference block prepended to existing instruction files. */\nconst INSTRUCTIONS_REF_START = '<!-- myco:agents-ref:start -->';\nconst INSTRUCTIONS_REF_END = '<!-- myco:agents-ref:end -->';\n\n/** Reference block prepended to existing instruction files. */\nconst INSTRUCTIONS_REF_BLOCK = `${INSTRUCTIONS_REF_START}\n> **Project intelligence:** This project uses [Myco](https://myco.sh). The canonical project rules are in [\\`AGENTS.md\\`](AGENTS.md) — read and follow it alongside this file.\n${INSTRUCTIONS_REF_END}\n\n`;\n\nexport interface InstallResult {\n  hooks: boolean;\n  mcp: boolean;\n  skills: boolean;\n  settings: boolean;\n  instructions: boolean;\n  /**\n   * Plugin deps package.json (e.g., .opencode/package.json). Only present for agents\n   * with `registration.pluginPackageTarget` set. False otherwise.\n   */\n  pluginPackage: boolean;\n}\n\nexport class SymbiontInstaller {\n  constructor(\n    private manifest: SymbiontManifest,\n    private projectRoot: string,\n    private packageRoot: string,\n  ) {}\n\n  /**\n   * Read a template file as raw text, checking both source and dist layouts.\n   * `relPath` is relative to `TEMPLATES_SUBDIR` — e.g. `'hook-guard.cjs'` for\n   * a shared template or `'opencode/plugin.ts'` for a per-agent template.\n   */\n  private readTemplateFile(relPath: string): string | null {\n    const candidates = [\n      path.join(this.packageRoot, TEMPLATES_SUBDIR, relPath),\n      // tsup preserves the src/ prefix under dist/, so the same subdir works in both layouts\n      path.join(this.packageRoot, 'dist', TEMPLATES_SUBDIR, relPath),\n    ];\n    for (const filePath of candidates) {\n      try { return fs.readFileSync(filePath, 'utf-8'); } catch { /* try next */ }\n    }\n    return null;\n  }\n\n  /**\n   * Write a Myco-managed file with a content-diff gate. Creates parent dirs as\n   * needed. Returns `true` if the file was written (new or updated), `false` if\n   * the on-disk content already matches and the write was skipped.\n   */\n  private writeManagedFile(absPath: string, content: string): boolean {\n    try {\n      if (fs.readFileSync(absPath, 'utf-8') === content) return false;\n    } catch { /* doesn't exist — proceed */ }\n    fs.mkdirSync(path.dirname(absPath), { recursive: true });\n    fs.writeFileSync(absPath, content, 'utf-8');\n    return true;\n  }\n\n  /**\n   * Copy the hook guard script into .agents/myco-run.cjs and delete the\n   * legacy .agents/myco-hook.cjs if present.\n   *\n   * The guard is the cross-platform entry point for lifecycle hooks.\n   * Hook commands invoke `node .agents/myco-run.cjs …`, and the guard\n   * resolves which myco binary to exec via `.myco/runtime.command`.\n   * MCP server spawn continues to use the published `myco-run` binary.\n   * Returns true if the file was written (or updated); false if skipped\n   * or N/A.\n   */\n  installHookGuard(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.hooksTarget) return false;\n\n    const guardTemplate = this.readTemplateFile(HOOK_GUARD_TEMPLATE_FILENAME);\n    if (!guardTemplate) return false;\n\n    // Sweep legacy guard file on every install — harmless no-op if absent.\n    // Prevents the old and new guard files coexisting for projects that\n    // were last installed under the `myco-hook.cjs` naming.\n    try {\n      fs.unlinkSync(path.join(this.projectRoot, LEGACY_HOOK_GUARD_PATH));\n    } catch { /* no legacy file present */ }\n\n    return this.writeManagedFile(\n      path.join(this.projectRoot, HOOK_GUARD_PROJECT_PATH),\n      guardTemplate,\n    );\n  }\n\n  /**\n   * Remove the hook guard script from .agents/myco-run.cjs.\n   * Also deletes the legacy .agents/myco-hook.cjs if present.\n   * Returns true if any file was removed; false otherwise.\n   */\n  uninstallHookGuard(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.hooksTarget) return false;\n\n    let removed = false;\n    for (const relPath of [HOOK_GUARD_PROJECT_PATH, LEGACY_HOOK_GUARD_PATH]) {\n      try {\n        fs.unlinkSync(path.join(this.projectRoot, relPath));\n        removed = true;\n      } catch { /* not present */ }\n    }\n    return removed;\n  }\n\n  /** Load a JSON template file for this symbiont. Returns null if not found. */\n  loadTemplate(name: string): Record<string, unknown> | null {\n    const raw = this.readTemplateFile(path.join(this.manifest.name, `${name}.json`));\n    if (raw === null) return null;\n    try { return JSON.parse(raw); } catch { return null; }\n  }\n\n  /**\n   * Load a template file verbatim (no JSON parsing).\n   * Used for plugin-file hook templates (e.g., opencode's plugin.ts) and any\n   * other template that is copied to the project without structural merging.\n   */\n  loadTemplateRaw(filename: string): string | null {\n    return this.readTemplateFile(path.join(this.manifest.name, filename));\n  }\n\n  /** Run all registration steps. */\n  install(): InstallResult {\n    const reg = this.manifest.registration;\n    this.reconcileAgentsMd();\n    // Install hook guard before hooks so the guard script is in place when hooks reference it\n    this.installHookGuard();\n    // One-time migration: sweep legacy MYCO_CMD / myco-run entries that\n    // the pre-runtime.command dispatch pattern wrote into symbiont config\n    // files. Idempotent — no-op on clean files. Runs before installSettings\n    // so the stale entries don't survive a deep-merge into the new template.\n    this.cleanupLegacyMycoCmdEntries();\n    const result = this.shouldBatchJsonTargets(reg)\n      ? this.installBatchedJson(reg!)\n      : {\n          hooks: this.installHooks(),\n          mcp: this.installMcp(),\n          skills: this.installSkills(),\n          settings: this.installSettings(),\n          instructions: this.installInstructions(),\n          pluginPackage: this.installPluginPackage(),\n        };\n    this.updateGitignore();\n    return result;\n  }\n\n  private reconcileAgentsMd(): void {\n    ensureAgentsMd(this.projectRoot, this.packageRoot);\n    const agentsPath = path.join(this.projectRoot, 'AGENTS.md');\n    let content = '';\n    try {\n      content = fs.readFileSync(agentsPath, 'utf-8');\n    } catch {\n      return;\n    }\n\n    const stripped = this.stripManagedAgentsBlock(content);\n    const separator = stripped.length > 0 && !stripped.endsWith('\\n') ? '\\n' : '';\n    const spacer = stripped.trimEnd().length > 0 ? '\\n\\n' : '';\n    const result = `${stripped}${separator}${spacer}${AGENTS_MANAGED_BLOCK}`;\n    if (result === content) return;\n    fs.writeFileSync(agentsPath, result, 'utf-8');\n  }\n\n  private stripManagedAgentsBlock(content: string): string {\n    const startIdx = content.indexOf(AGENTS_MANAGED_START);\n    if (startIdx === -1) return content.trimEnd();\n    const endIdx = content.indexOf(AGENTS_MANAGED_END, startIdx);\n    if (endIdx === -1) return content.trimEnd();\n    const afterEnd = endIdx + AGENTS_MANAGED_END.length;\n    return (content.slice(0, startIdx) + content.slice(afterEnd)).trimEnd();\n  }\n\n  private getCustomPlanGitignoreEntries(): string[] {\n    const config = this.loadProjectConfig();\n    if (!config?.capture.ignore_plan_dirs_in_git) return [];\n\n    return [...new Set(\n      config.capture.plan_dirs\n        .map((dir) => this.normalizeProjectRelativeDir(dir))\n        .filter((dir): dir is string => dir !== null),\n    )];\n  }\n\n  private loadProjectConfig() {\n    try {\n      return loadMergedConfig(path.join(this.projectRoot, '.myco'));\n    } catch {\n      return null;\n    }\n  }\n\n  private normalizeProjectRelativeDir(dir: string): string | null {\n    const slashNormalized = dir.trim().replaceAll('\\\\', '/');\n    if (!slashNormalized) return null;\n    if (slashNormalized.startsWith('~/')) return null;\n    if (path.posix.isAbsolute(slashNormalized) || path.win32.isAbsolute(slashNormalized)) return null;\n\n    const withoutDotPrefix = slashNormalized.replace(/^\\.\\//, '');\n    const normalized = path.posix.normalize(withoutDotPrefix);\n    if (normalized === '.' || normalized === '..' || normalized.startsWith('../')) return null;\n    return normalized.endsWith('/') ? normalized : `${normalized}/`;\n  }\n\n  /**\n   * Sweep legacy `MYCO_CMD` env-var writes and `myco-run` command-name\n   * entries from this symbiont's installed config files.\n   *\n   * Background: prior to the `.myco/runtime.command` refactor, `make\n   * dev-link` injected `MYCO_CMD=myco-dev` into each symbiont's env\n   * block (`.claude/settings.json` → `env`, `.cursor/mcp.json` →\n   * `mcp.myco.env`, `.codex/config.toml` →\n   * `[shell_environment_policy.set]`), and each symbiont's template\n   * permission allowlist listed `myco-run` as a callable command. The\n   * env-var pattern is now obsolete — `.myco/runtime.command` is the\n   * hook-side source of truth — while the old allowlist entries remain\n   * legacy noise after the permissions refactor.\n   *\n   * This cleanup runs automatically on every install/update pass so\n   * contributors upgrading across this refactor don't need to manually\n   * edit any config file. Idempotent: a second run after cleanup is a\n   * no-op. Safe to remove from the install pipeline once every known\n   * contributor has updated at least once.\n   */\n  private cleanupLegacyMycoCmdEntries(): void {\n    const reg = this.manifest.registration;\n    if (!reg) return;\n\n    if (reg.settingsTarget) {\n      const settingsPath = path.join(this.projectRoot, reg.settingsTarget);\n      const format = reg.settingsFormat ?? 'json';\n      if (format === 'toml') {\n        this.stripLegacyFromToml(settingsPath);\n      } else {\n        this.stripLegacyFromJson(settingsPath);\n      }\n    }\n\n    if (reg.mcpTarget && reg.mcpFormat !== 'toml') {\n      // MCP server env blocks — cursor writes MYCO_CMD here under\n      // `mcp.myco.env` / `mcpServers.myco.env`. TOML MCP targets live\n      // inside the same config.toml already handled above.\n      this.stripLegacyFromJson(path.join(this.projectRoot, reg.mcpTarget));\n    }\n  }\n\n  /**\n   * Walk a JSON settings/MCP file and delete legacy MYCO_CMD + myco-run\n   * entries. Writes back only if something changed.\n   *\n   * Removes:\n   * - `MYCO_CMD` key from any object named `env` anywhere in the tree\n   * - `myco-run` / `myco-run *` / `myco-run:*` / `Bash(myco-run *)` /\n   *   `Bash(myco-run:*)` / `ShellTool(myco-run *)` from string arrays\n   * - `myco-run` / `myco-run *` keys from object-boolean maps like\n   *   `chat.tools.terminal.autoApprove`\n   */\n  private stripLegacyFromJson(filePath: string): void {\n    let raw: string;\n    try { raw = fs.readFileSync(filePath, 'utf-8'); } catch { return; }\n    let data: unknown;\n    try { data = JSON.parse(raw); } catch { return; }\n\n    let changed = false;\n    const LEGACY_STRINGS = new Set([\n      'myco-run',\n      'myco-run *',\n      'myco-run:*',\n      'Bash(myco-run *)',\n      'Bash(myco-run:*)',\n      'ShellTool(myco-run *)',\n    ]);\n    const LEGACY_OBJECT_KEYS = ['myco-run', 'myco-run *'];\n    // Fields whose array values are exec argvs (process invocation arrays),\n    // NOT allowlist tokens. The cleanup sweep must not touch these because\n    // `myco-run` remains the PUBLISHED MCP launcher command — stripping it\n    // from an opencode-style `command: [\"myco-run\", \"mcp\"]` array would\n    // corrupt the MCP spawn. Only works today because installMcp() deep-\n    // merges the template back in after cleanup; don't rely on that mask.\n    const EXEC_ARGV_KEYS = new Set(['command', 'args']);\n\n    const walk = (node: unknown, parentKey?: string): void => {\n      if (node === null || typeof node !== 'object') return;\n      if (Array.isArray(node)) {\n        // Exec argv arrays are process invocations (e.g. opencode's\n        // `command: [\"myco-run\", \"mcp\"]`). Never strip tokens from these\n        // — `myco-run` is the intended MCP command.\n        if (parentKey !== undefined && EXEC_ARGV_KEYS.has(parentKey)) return;\n        // String arrays: filter out legacy allowlist tokens in place.\n        for (let i = node.length - 1; i >= 0; i--) {\n          if (typeof node[i] === 'string' && LEGACY_STRINGS.has(node[i] as string)) {\n            node.splice(i, 1);\n            changed = true;\n          } else {\n            walk(node[i]);\n          }\n        }\n        return;\n      }\n      const obj = node as Record<string, unknown>;\n      // Env blocks: strip MYCO_CMD specifically. We check by key name so\n      // we match any `env` object at any nesting level.\n      if (parentKey === 'env' && 'MYCO_CMD' in obj) {\n        delete obj.MYCO_CMD;\n        changed = true;\n      }\n      // Object-boolean maps keyed on command name: strip legacy keys.\n      // Skip inside exec argv scalar fields (e.g. `command: \"myco-run\"`)\n      // would be caught by the LEGACY_OBJECT_KEYS lookup only when the\n      // key is literally `myco-run`, which is a command-name key in\n      // allowlist objects — exec argv scalars are fine because the\n      // scalar value `\"myco-run\"` is walked as a string and skipped.\n      for (const key of LEGACY_OBJECT_KEYS) {\n        if (key in obj) {\n          delete obj[key];\n          changed = true;\n        }\n      }\n      for (const [k, v] of Object.entries(obj)) {\n        walk(v, k);\n      }\n    };\n\n    walk(data);\n\n    if (changed) {\n      fs.writeFileSync(filePath, JSON.stringify(data, null, 2) + '\\n', 'utf-8');\n    }\n  }\n\n  /**\n   * Strip `MYCO_CMD = \"...\"` from the `[shell_environment_policy.set]`\n   * section of a TOML settings file. Leaves the rest of the file\n   * untouched. Drops the `[shell_environment_policy.set]` header entirely\n   * when the section becomes empty.\n   */\n  private stripLegacyFromToml(filePath: string): void {\n    let raw: string;\n    try { raw = fs.readFileSync(filePath, 'utf-8'); } catch { return; }\n    const next = removeTomlSectionKeys(raw, 'shell_environment_policy.set', ['MYCO_CMD']);\n    if (next !== raw) {\n      fs.writeFileSync(filePath, next, 'utf-8');\n    }\n  }\n\n  /**\n   * Check if ALL non-null JSON targets share the same file (e.g., Gemini).\n   * Only batches when every target resolves to one path — partial overlaps\n   * (e.g., Claude Code: hooks+settings share but MCP is separate) use normal path.\n   *\n   * Plugin-file hooks (e.g., opencode) naturally fall out of batching because their\n   * hooksTarget is a distinct .ts file path, yielding a Set size ≥ 2.\n   */\n  private shouldBatchJsonTargets(reg: typeof this.manifest.registration): boolean {\n    if (!reg) return false;\n    const mcpFormat = reg.mcpFormat ?? 'json';\n    if (mcpFormat !== 'json') return false;\n    const targets = [reg.hooksTarget, reg.mcpTarget, reg.settingsTarget].filter(Boolean);\n    return targets.length > 1 && new Set(targets).size === 1;\n  }\n\n  /**\n   * Batched install for agents where hooks, MCP, and settings share one JSON file.\n   * Single read → apply all transforms in memory → single write.\n   */\n  private installBatchedJson(reg: NonNullable<typeof this.manifest.registration>): InstallResult {\n    const targetPath = path.join(this.projectRoot, reg.hooksTarget ?? reg.mcpTarget ?? reg.settingsTarget!);\n    let data = readJsonFile(targetPath);\n    let hooks = false, mcp = false, settings = false;\n\n    // Apply hooks transform\n    const hooksTemplate = reg.hooksTarget ? this.loadTemplate('hooks') : null;\n    if (hooksTemplate) {\n      const existingHooks = (data.hooks ?? {}) as Record<string, unknown[]>;\n      const mergedHooks: Record<string, unknown[]> = {};\n      for (const [event, groups] of Object.entries(existingHooks)) {\n        const nonMyco = (groups as Array<Record<string, unknown>>).filter((g) => !isMycoHookGroup(g));\n        if (nonMyco.length > 0) mergedHooks[event] = nonMyco;\n      }\n      for (const [event, groups] of Object.entries(hooksTemplate)) {\n        mergedHooks[event] = [...(mergedHooks[event] ?? []), ...(groups as unknown[])];\n      }\n      data.hooks = mergedHooks;\n      hooks = true;\n    }\n\n    // Apply MCP transform\n    const mcpTemplate = reg.mcpTarget ? this.loadTemplate('mcp') : null;\n    if (mcpTemplate) {\n      const serversKey = reg.mcpServersKey ?? 'mcpServers';\n      const servers = (data[serversKey] ?? {}) as Record<string, unknown>;\n      for (const [name, def] of Object.entries(mcpTemplate)) {\n        servers[name] = def;\n      }\n      data[serversKey] = servers;\n      mcp = true;\n    }\n\n    // Apply settings transform\n    const settingsTemplate = reg.settingsTarget ? this.loadTemplate('settings') : null;\n    if (settingsTemplate) {\n      data = deepMergeSettings(data, settingsTemplate);\n      settings = true;\n    }\n\n    writeJsonFile(targetPath, data);\n\n    return {\n      hooks,\n      mcp,\n      skills: this.installSkills(),\n      settings,\n      instructions: this.installInstructions(),\n      pluginPackage: this.installPluginPackage(),\n    };\n  }\n\n  /** Remove all Myco registration from this symbiont's project files. */\n  uninstall(): InstallResult {\n    const reg = this.manifest.registration;\n    const result = this.shouldBatchJsonTargets(reg)\n      ? this.uninstallBatchedJson(reg!)\n      : {\n          hooks: this.uninstallHooks(),\n          mcp: this.uninstallMcp(),\n          skills: this.uninstallSkills(),\n          settings: this.uninstallSettings(),\n          instructions: this.uninstallInstructions(),\n          pluginPackage: false,\n        };\n    // Remove hook guard after hooks/settings so the file is cleaned up last\n    this.uninstallHookGuard();\n    this.cleanGitignore();\n    return result;\n  }\n\n  /**\n   * Batched uninstall for agents where hooks, MCP, and settings share one JSON file.\n   */\n  private uninstallBatchedJson(reg: NonNullable<typeof this.manifest.registration>): InstallResult {\n    const targetPath = path.join(this.projectRoot, reg.hooksTarget ?? reg.mcpTarget ?? reg.settingsTarget!);\n    const data = readJsonFile(targetPath);\n    if (Object.keys(data).length === 0) {\n      return {\n        hooks: false,\n        mcp: false,\n        skills: this.uninstallSkills(),\n        settings: false,\n        instructions: this.uninstallInstructions(),\n        pluginPackage: false,\n      };\n    }\n\n    let hooks = false, mcp = false, settings = false;\n\n    // Remove hooks\n    if (reg.hooksTarget) {\n      const existingHooks = (data.hooks ?? {}) as Record<string, unknown[]>;\n      if (Object.keys(existingHooks).length > 0) {\n        const cleaned: Record<string, unknown[]> = {};\n        for (const [event, groups] of Object.entries(existingHooks)) {\n          const nonMyco = (groups as Array<Record<string, unknown>>).filter((g) => !isMycoHookGroup(g));\n          if (nonMyco.length > 0) cleaned[event] = nonMyco;\n        }\n        if (Object.keys(cleaned).length === 0) {\n          delete data.hooks;\n        } else {\n          data.hooks = cleaned;\n        }\n        hooks = true;\n      }\n    }\n\n    // Remove MCP\n    if (reg.mcpTarget) {\n      const serversKey = reg.mcpServersKey ?? 'mcpServers';\n      const servers = (data[serversKey] ?? {}) as Record<string, unknown>;\n      if (servers[MYCO_MCP_SERVER_NAME]) {\n        delete servers[MYCO_MCP_SERVER_NAME];\n        if (Object.keys(servers).length === 0) delete data[serversKey];\n        else data[serversKey] = servers;\n        mcp = true;\n      }\n    }\n\n    // Remove settings\n    const settingsTemplate = reg.settingsTarget ? this.loadTemplate('settings') : null;\n    if (settingsTemplate) {\n      settings = deepRemoveSettings(data, settingsTemplate);\n    }\n\n    writeOrDeleteJsonFile(targetPath, data);\n\n    return {\n      hooks,\n      mcp,\n      skills: this.uninstallSkills(),\n      settings,\n      instructions: this.uninstallInstructions(),\n      pluginPackage: false,\n    };\n  }\n\n  /**\n   * Ensure the instruction file references AGENTS.md.\n   * - File doesn't exist: write the full stub template.\n   * - File exists without reference: prepend a reference block.\n   * - File already has reference: skip (idempotent).\n   *\n   * Also ensures AGENTS.md exists — creates a starter if missing.\n   */\n  installInstructions(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.instructionsFile) return false;\n\n    // Ensure AGENTS.md exists before creating stubs that reference it\n    ensureAgentsMd(this.projectRoot, this.packageRoot);\n\n    const targetPath = path.join(this.projectRoot, reg.instructionsFile);\n\n    // Check if file already exists\n    let existing: string | null = null;\n    try { existing = fs.readFileSync(targetPath, 'utf-8'); } catch { /* doesn't exist */ }\n\n    if (existing !== null) {\n      // File exists — check if it already has our reference\n      if (existing.includes(INSTRUCTIONS_REF_START) || existing.includes(INSTRUCTIONS_STUB_MARKER)) {\n        return false; // Already has reference — idempotent\n      }\n      // Prepend reference block to existing content\n      fs.writeFileSync(targetPath, INSTRUCTIONS_REF_BLOCK + existing, 'utf-8');\n      return true;\n    }\n\n    // File doesn't exist — write the full stub template\n    const templateCandidates = [\n      path.join(this.packageRoot, 'src/symbionts/templates/instructions-stub.md'),\n      path.join(this.packageRoot, 'dist/src/symbionts/templates/instructions-stub.md'),\n    ];\n    let stub: string | null = null;\n    for (const p of templateCandidates) {\n      try { stub = fs.readFileSync(p, 'utf-8'); break; } catch { /* try next */ }\n    }\n    if (!stub) return false;\n\n    stub = stub.replace('{agentDisplayName}', this.manifest.displayName);\n    fs.mkdirSync(path.dirname(targetPath), { recursive: true });\n    fs.writeFileSync(targetPath, stub, 'utf-8');\n    return true;\n  }\n\n  /**\n   * Remove Myco's instruction file reference.\n   * - If file is the full stub (only Myco content): delete it.\n   * - If file has user content + prepended reference: remove just the reference block.\n   */\n  uninstallInstructions(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.instructionsFile) return false;\n\n    const targetPath = path.join(this.projectRoot, reg.instructionsFile);\n    let content: string;\n    try { content = fs.readFileSync(targetPath, 'utf-8'); } catch { return false; }\n\n    // Case 1: Full stub — delete the file entirely\n    if (content.includes(INSTRUCTIONS_STUB_MARKER)) {\n      fs.unlinkSync(targetPath);\n      return true;\n    }\n\n    // Case 2: Prepended reference block — remove just the block\n    if (content.includes(INSTRUCTIONS_REF_START)) {\n      const startIdx = content.indexOf(INSTRUCTIONS_REF_START);\n      const endIdx = content.indexOf(INSTRUCTIONS_REF_END);\n      if (endIdx > startIdx) {\n        // Remove from start marker through end marker + trailing whitespace\n        const afterEnd = endIdx + INSTRUCTIONS_REF_END.length;\n        const cleaned = (content.slice(0, startIdx) + content.slice(afterEnd)).replace(/^\\n+/, '');\n        fs.writeFileSync(targetPath, cleaned, 'utf-8');\n        return true;\n      }\n    }\n\n    return false;\n  }\n\n  /** List skill directory names from the package root. Returns empty array if not found. */\n  private listSkillDirs(): string[] {\n    try {\n      return fs.readdirSync(path.join(this.packageRoot, SKILLS_SUBDIR), { withFileTypes: true })\n        .filter((d) => d.isDirectory())\n        .map((d) => d.name);\n    } catch { return []; }\n  }\n\n  /**\n   * Reconcile Myco-owned skill entries in project .gitignore.\n   * Computes the desired entry set, strips any existing Myco block\n   * (and legacy entries), then writes the current block if changed.\n   */\n  private updateGitignore(): void {\n    const reg = this.manifest.registration;\n    if (!reg?.skillsTarget) return;\n\n    const skillNames = this.listSkillDirs();\n\n    // Desired state: canonical per-skill entries + infrastructure artifacts.\n    // Agent-specific targets (e.g. .claude/skills/) use local .gitignore files\n    // instead of polluting the project-level .gitignore.\n    const desired = [\n      ...skillNames.map((name) => `${CANONICAL_SKILLS_DIR}/${name}`),\n      ...this.getCustomPlanGitignoreEntries(),\n      WRANGLER_CACHE_DIR,\n    ];\n\n    const gitignorePath = path.join(this.projectRoot, '.gitignore');\n    let content = '';\n    try { content = fs.readFileSync(gitignorePath, 'utf-8'); } catch { /* doesn't exist yet */ }\n\n    // Strip existing Myco block and any legacy entries\n    const stripped = this.stripMycoGitignoreBlock(content, skillNames);\n\n    // Build the new block\n    const desiredBlock = desired.length > 0\n      ? `${GITIGNORE_COMMENT}\\n${desired.join('\\n')}\\n`\n      : '';\n\n    // Check if anything changed\n    if (stripped === content && desiredBlock === '') return;\n    const separator = stripped.length > 0 && !stripped.endsWith('\\n') ? '\\n' : '';\n    const spacer = stripped.length > 0 && desiredBlock.length > 0 ? '\\n' : '';\n    const result = stripped + separator + spacer + desiredBlock;\n    if (result === content) return;\n\n    fs.writeFileSync(gitignorePath, result, 'utf-8');\n  }\n\n  /**\n   * Remove all Myco-owned gitignore entries: the comment header, per-skill\n   * entries for both canonical and agent-specific paths, and legacy blanket\n   * directory entries. Returns the cleaned content.\n   */\n  private stripMycoGitignoreBlock(content: string, skillNames: string[]): string {\n    let stripped = content;\n\n    const managedStart = stripped.indexOf(GITIGNORE_COMMENT);\n    if (managedStart !== -1) {\n      const managedEndMatch = stripped.slice(managedStart).match(/\\n\\n/);\n      const managedEnd = managedEndMatch\n        ? managedStart + managedEndMatch.index! + managedEndMatch[0].length\n        : stripped.length;\n      stripped = stripped.slice(0, managedStart) + stripped.slice(managedEnd);\n    }\n\n    const reg = this.manifest.registration;\n    const legacyOwnedLines = new Set<string>([\n      GITIGNORE_SKILLS_COMMENT_LEGACY,\n      `${CANONICAL_SKILLS_DIR}/`,\n      WRANGLER_CACHE_DIR,\n    ]);\n    for (const name of skillNames) {\n      legacyOwnedLines.add(`${CANONICAL_SKILLS_DIR}/${name}`);\n      if (reg?.skillsTarget && reg.skillsTarget !== CANONICAL_SKILLS_DIR) {\n        legacyOwnedLines.add(`${reg.skillsTarget}/${name}`);\n      }\n    }\n\n    const filtered = stripped\n      .split('\\n')\n      .filter((line) => !legacyOwnedLines.has(line));\n    return filtered.join('\\n').replace(/\\n{3,}/g, '\\n\\n').trimEnd() + (filtered.length > 0 ? '\\n' : '');\n  }\n\n  /**\n   * Merge hooks template into the target settings file.\n   * Replaces all Myco-owned hook groups; preserves non-Myco hooks.\n   *\n   * For plugin-file agents (e.g., opencode) this dispatches to `installPluginHookFile()`\n   * which writes a verbatim .ts plugin source to hooksTarget instead of merging JSON.\n   */\n  installHooks(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.hooksTarget) return false;\n\n    if (reg.hooksFormat === HOOKS_FORMAT_PLUGIN_FILE) return this.installPluginHookFile();\n\n    const template = this.loadTemplate('hooks');\n    if (!template) return false;\n\n    const targetPath = path.join(this.projectRoot, reg.hooksTarget);\n    const settings = readJsonFile(targetPath);\n    const existingHooks = (settings.hooks ?? {}) as Record<string, unknown[]>;\n\n    // Build merged hooks: for each event, keep non-Myco groups + add template groups\n    const mergedHooks: Record<string, unknown[]> = {};\n\n    // Preserve non-Myco hooks from existing config\n    for (const [event, groups] of Object.entries(existingHooks)) {\n      const nonMycoGroups = (groups as Array<Record<string, unknown>>).filter(\n        (group) => !isMycoHookGroup(group),\n      );\n      if (nonMycoGroups.length > 0) {\n        mergedHooks[event] = nonMycoGroups;\n      }\n    }\n\n    // Add template hooks\n    for (const [event, groups] of Object.entries(template)) {\n      mergedHooks[event] = [...(mergedHooks[event] ?? []), ...(groups as unknown[])];\n    }\n\n    settings.hooks = mergedHooks;\n    writeJsonFile(targetPath, settings);\n    return true;\n  }\n\n  /**\n   * Install a plugin-file hook target by copying a verbatim template.\n   * Used for agents whose hook system is plugin-based rather than JSON entry-based\n   * (e.g., opencode's TypeScript plugin system).\n   */\n  private installPluginHookFile(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.hooksTarget) return false;\n\n    const templateContent = this.loadTemplateRaw('plugin.ts');\n    if (templateContent === null) return false;\n\n    return this.writeManagedFile(\n      path.join(this.projectRoot, reg.hooksTarget),\n      templateContent,\n    );\n  }\n\n  /**\n   * Remove a plugin-file hook target.\n   * Only deletes files whose content contains the Myco plugin marker — contributors\n   * who hand-edit the plugin file without removing the marker are protected.\n   */\n  private uninstallPluginHookFile(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.hooksTarget) return false;\n\n    const targetPath = path.join(this.projectRoot, reg.hooksTarget);\n    let content: string;\n    try { content = fs.readFileSync(targetPath, 'utf-8'); } catch { return false; }\n\n    if (!content.includes(MYCO_PLUGIN_FILE_MARKER)) return false;\n\n    try {\n      fs.unlinkSync(targetPath);\n      // Remove parent plugins dir if now empty\n      try { fs.rmdirSync(path.dirname(targetPath)); } catch { /* not empty or missing */ }\n      return true;\n    } catch {\n      return false;\n    }\n  }\n\n  /**\n   * Install a plugin deps package.json for plugin-file agents (e.g., opencode).\n   * Writes the template verbatim so the agent's package manager can install the SDK.\n   */\n  private installPluginPackage(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.pluginPackageTarget) return false;\n\n    const templateContent = this.loadTemplateRaw('package.json');\n    if (templateContent === null) return false;\n\n    return this.writeManagedFile(\n      path.join(this.projectRoot, reg.pluginPackageTarget),\n      templateContent,\n    );\n  }\n\n  /**\n   * Merge MCP server template into the target config file.\n   * Replaces the `myco` server entry; preserves other servers.\n   */\n  installMcp(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.mcpTarget) return false;\n\n    const template = this.buildMcpTemplate(this.loadTemplate('mcp'));\n    if (!template) return false;\n\n    const targetPath = path.join(this.projectRoot, reg.mcpTarget);\n    if (reg.mcpFormat === 'toml') {\n      return this.installMcpToml(targetPath, template);\n    }\n    return this.installMcpJson(targetPath, template);\n  }\n\n  private buildMcpTemplate(\n    template: Record<string, unknown> | null,\n  ): Record<string, unknown> | null {\n    if (!template) return null;\n\n    const overrides = this.resolveMcpLaunchOverrides();\n    if (!overrides.cwd && Object.keys(overrides.env).length === 0) return template;\n\n    return Object.fromEntries(\n      Object.entries(template).map(([name, def]) => {\n        if (!def || typeof def !== 'object' || Array.isArray(def)) return [name, def];\n        const server = def as Record<string, unknown>;\n        const mergedEnv = {\n          ...(\n            server.env && typeof server.env === 'object' && !Array.isArray(server.env)\n              ? server.env\n              : {}\n          ),\n          ...overrides.env,\n        } as Record<string, unknown>;\n        return [\n          name,\n          {\n            ...server,\n            ...(overrides.cwd ? { cwd: overrides.cwd } : {}),\n            ...(Object.keys(mergedEnv).length > 0 ? { env: mergedEnv } : {}),\n          },\n        ];\n      }),\n    );\n  }\n\n  private resolveMcpLaunchOverrides(): McpLaunchOverrides {\n    const vaultDir = path.join(this.projectRoot, '.myco');\n    const registration = this.manifest.registration;\n    const envEntries = Object.entries(registration?.mcpEnv ?? {});\n    return {\n      cwd: this.resolveMcpPlaceholderValue(registration?.mcpCwd, vaultDir),\n      env: Object.fromEntries(\n        envEntries.flatMap(([key, value]) => {\n          const resolved = this.resolveMcpPlaceholderValue(value, vaultDir);\n          return resolved ? [[key, resolved] as const] : [];\n        }),\n      ),\n    };\n  }\n\n  private resolveMcpPlaceholderValue(\n    value: string | undefined,\n    vaultDir: string,\n  ): string | undefined {\n    if (!value) return value;\n    return value\n      .replaceAll(MCP_ENV_PROJECT_ROOT_TOKEN, this.projectRoot)\n      .replaceAll(MCP_ENV_VAULT_DIR_TOKEN, vaultDir);\n  }\n\n  /**\n   * Write MCP servers to a JSON config file under the manifest-configured key.\n   * Most agents use the canonical `mcpServers` key; opencode uses `mcp`.\n   *\n   * The `?? 'mcpServers'` fallback protects against test fixtures that construct\n   * manifests as plain object literals and bypass the schema's default.\n   */\n  private installMcpJson(targetPath: string, template: Record<string, unknown>): boolean {\n    const serversKey = this.manifest.registration!.mcpServersKey ?? 'mcpServers';\n    const config = readJsonFile(targetPath);\n    const servers = (config[serversKey] ?? {}) as Record<string, unknown>;\n\n    for (const [name, def] of Object.entries(template)) {\n      servers[name] = def;\n    }\n\n    config[serversKey] = servers;\n    writeJsonFile(targetPath, config);\n    return true;\n  }\n\n  /** Write MCP servers to a TOML config file. */\n  private installMcpToml(targetPath: string, template: Record<string, unknown>): boolean {\n    let raw = '';\n    try { raw = fs.readFileSync(targetPath, 'utf-8'); } catch { /* doesn't exist */ }\n\n    for (const [name, def] of Object.entries(template)) {\n      raw = buildTomlMcpSection(raw, name, def as Record<string, unknown>);\n    }\n\n    fs.mkdirSync(path.dirname(targetPath), { recursive: true });\n    fs.writeFileSync(targetPath, raw, 'utf-8');\n    return true;\n  }\n\n  /**\n   * Create symlinks for skills through .agents/skills/ canonical layer.\n   * Canonical: .agents/skills/<name> -> <packageRoot>/skills/<name>\n   * Agent-specific: <skillsTarget>/<name> -> ../../.agents/skills/<name>\n   */\n  installSkills(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.skillsTarget) return false;\n\n    const skillNames = this.listSkillDirs();\n    if (skillNames.length === 0) return false;\n\n    const skillsSrc = path.join(this.packageRoot, SKILLS_SUBDIR);\n\n    // Create canonical symlinks: .agents/skills/<name> -> package skills\n    const canonicalDir = path.join(this.projectRoot, CANONICAL_SKILLS_DIR);\n    fs.mkdirSync(canonicalDir, { recursive: true });\n\n    for (const name of skillNames) {\n      const canonicalLink = path.join(canonicalDir, name);\n      const target = path.join(skillsSrc, name);\n      ensureSymlink(canonicalLink, target);\n    }\n\n    // Create agent-specific symlinks if skillsTarget differs from canonical\n    const agentSkillsDir = path.join(this.projectRoot, reg.skillsTarget);\n    const canonicalRel = path.relative(agentSkillsDir, canonicalDir);\n\n    if (reg.skillsTarget !== CANONICAL_SKILLS_DIR) {\n      fs.mkdirSync(agentSkillsDir, { recursive: true });\n      for (const name of skillNames) {\n        const agentLink = path.join(agentSkillsDir, name);\n        const relTarget = path.join(canonicalRel, name);\n        ensureSymlink(agentLink, relTarget);\n      }\n      ensureLocalSkillsGitignore(agentSkillsDir);\n    }\n\n    return true;\n  }\n\n  /**\n   * Merge settings template into the target settings file.\n   * JSON targets: deep-merges objects and deduplicates arrays.\n   * TOML targets: emits each top-level template key as a [section] with scalar children.\n   */\n  installSettings(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.settingsTarget) return false;\n\n    const template = this.loadTemplate('settings');\n    if (!template) return false;\n\n    const targetPath = path.join(this.projectRoot, reg.settingsTarget);\n    const settingsFormat = reg.settingsFormat ?? 'json';\n\n    if (settingsFormat === 'toml') {\n      return this.installSettingsToml(targetPath, template);\n    }\n\n    const existing = readJsonFile(targetPath);\n    const merged = deepMergeSettings(existing, template);\n    writeJsonFile(targetPath, merged);\n    return true;\n  }\n\n  /**\n   * Merge a settings template into a TOML config file.\n   * Each top-level key in the template becomes a [section] header, with its\n   * children written as scalar key = value lines. Existing sections and keys\n   * outside the template (including unrelated sections like [mcp_servers.*])\n   * are preserved.\n   */\n  private installSettingsToml(targetPath: string, template: Record<string, unknown>): boolean {\n    let raw = '';\n    try { raw = fs.readFileSync(targetPath, 'utf-8'); } catch { /* doesn't exist */ }\n\n    for (const [sectionName, values] of Object.entries(template)) {\n      if (!values || typeof values !== 'object' || Array.isArray(values)) continue;\n      raw = upsertTomlSection(raw, sectionName, values as Record<string, unknown>);\n    }\n\n    fs.mkdirSync(path.dirname(targetPath), { recursive: true });\n    fs.writeFileSync(targetPath, raw, 'utf-8');\n    return true;\n  }\n\n  /**\n   * Remove Myco entries from the target settings file.\n   * Template-driven: loads the settings template and removes matching values.\n   * JSON: arrays filtered by template values, object keys deleted by name.\n   * TOML: removes each template key from its section; empty sections are dropped.\n   */\n  uninstallSettings(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.settingsTarget) return false;\n\n    const template = this.loadTemplate('settings');\n    if (!template) return false;\n\n    const targetPath = path.join(this.projectRoot, reg.settingsTarget);\n    const settingsFormat = reg.settingsFormat ?? 'json';\n\n    if (settingsFormat === 'toml') {\n      return this.uninstallSettingsToml(targetPath, template);\n    }\n\n    const settings = readJsonFile(targetPath);\n    if (Object.keys(settings).length === 0) return false;\n\n    const changed = deepRemoveSettings(settings, template);\n    if (!changed) return false;\n\n    writeOrDeleteJsonFile(targetPath, settings);\n    return true;\n  }\n\n  /**\n   * Remove template-defined keys from TOML settings file.\n   * For each section in the template, deletes only the keys the template owns;\n   * other keys and unrelated sections stay intact. Empty sections are stripped.\n   * Deletes the file entirely if no TOML content remains.\n   */\n  private uninstallSettingsToml(targetPath: string, template: Record<string, unknown>): boolean {\n    let raw = '';\n    try { raw = fs.readFileSync(targetPath, 'utf-8'); } catch { return false; }\n    if (!raw.trim()) return false;\n\n    let changed = false;\n    for (const [sectionName, values] of Object.entries(template)) {\n      if (!values || typeof values !== 'object' || Array.isArray(values)) continue;\n      const keys = Object.keys(values as Record<string, unknown>);\n      const next = removeTomlSectionKeys(raw, sectionName, keys);\n      if (next !== raw) {\n        raw = next;\n        changed = true;\n      }\n    }\n\n    if (!changed) return false;\n\n    if (!raw.trim()) {\n      try { fs.unlinkSync(targetPath); } catch { /* ignore */ }\n    } else {\n      fs.writeFileSync(targetPath, raw, 'utf-8');\n    }\n    return true;\n  }\n\n  /**\n   * Remove Myco hook groups from the target settings file.\n   *\n   * For plugin-file agents (e.g., opencode) this dispatches to `uninstallPluginHookFile()`\n   * which deletes the verbatim plugin file (guarded by the Myco plugin marker).\n   */\n  uninstallHooks(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.hooksTarget) return false;\n\n    if (reg.hooksFormat === HOOKS_FORMAT_PLUGIN_FILE) return this.uninstallPluginHookFile();\n\n    const targetPath = path.join(this.projectRoot, reg.hooksTarget);\n    const settings = readJsonFile(targetPath);\n    const existingHooks = (settings.hooks ?? {}) as Record<string, unknown[]>;\n    if (Object.keys(existingHooks).length === 0) return false;\n\n    const cleaned: Record<string, unknown[]> = {};\n    for (const [event, groups] of Object.entries(existingHooks)) {\n      const nonMyco = (groups as Array<Record<string, unknown>>).filter(\n        (group) => !isMycoHookGroup(group),\n      );\n      if (nonMyco.length > 0) {\n        cleaned[event] = nonMyco;\n      }\n    }\n\n    if (Object.keys(cleaned).length === 0) {\n      delete settings.hooks;\n    } else {\n      settings.hooks = cleaned;\n    }\n\n    writeOrDeleteJsonFile(targetPath, settings);\n    return true;\n  }\n\n  /** Remove Myco MCP server entry from the target config file. */\n  uninstallMcp(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.mcpTarget) return false;\n\n    const targetPath = path.join(this.projectRoot, reg.mcpTarget);\n    if (reg.mcpFormat === 'toml') {\n      return this.uninstallMcpToml(targetPath);\n    }\n    return this.uninstallMcpJson(targetPath);\n  }\n\n  private uninstallMcpJson(targetPath: string): boolean {\n    // Fallback matches the schema default; protects test fixtures that bypass .parse().\n    const serversKey = this.manifest.registration!.mcpServersKey ?? 'mcpServers';\n    const config = readJsonFile(targetPath);\n    const servers = (config[serversKey] ?? {}) as Record<string, unknown>;\n    if (!servers[MYCO_MCP_SERVER_NAME]) return false;\n\n    delete servers[MYCO_MCP_SERVER_NAME];\n\n    if (Object.keys(servers).length === 0) {\n      delete config[serversKey];\n    } else {\n      config[serversKey] = servers;\n    }\n\n    writeOrDeleteJsonFile(targetPath, config);\n    return true;\n  }\n\n  private uninstallMcpToml(targetPath: string): boolean {\n    let raw = '';\n    try { raw = fs.readFileSync(targetPath, 'utf-8'); } catch { return false; }\n\n    const sectionHeader = `[mcp_servers.${MYCO_MCP_SERVER_NAME}]`;\n    if (!raw.includes(sectionHeader)) return false;\n\n    const startIdx = raw.indexOf(sectionHeader);\n    const endIdx = findTomlSectionEnd(raw, startIdx + sectionHeader.length, `mcp_servers.${MYCO_MCP_SERVER_NAME}`);\n    const before = raw.slice(0, startIdx).trimEnd();\n    const after = raw.slice(endIdx).trimStart();\n    const updated = (before + (before && after ? '\\n\\n' : '') + after).trimEnd();\n\n    if (!updated.trim()) {\n      try { fs.unlinkSync(targetPath); } catch { /* ignore */ }\n    } else {\n      fs.writeFileSync(targetPath, updated + '\\n', 'utf-8');\n    }\n    return true;\n  }\n\n  /** Remove skill symlinks (canonical + agent-specific). */\n  uninstallSkills(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.skillsTarget) return false;\n\n    const skillNames = this.listSkillDirs();\n    if (skillNames.length === 0) return false;\n\n    let removed = false;\n\n    // Remove agent-specific symlinks\n    if (reg.skillsTarget !== CANONICAL_SKILLS_DIR) {\n      for (const name of skillNames) {\n        const link = path.join(this.projectRoot, reg.skillsTarget, name);\n        try { fs.unlinkSync(link); removed = true; } catch { /* doesn't exist */ }\n      }\n      // Remove agent skills dir if now empty (rmdirSync fails atomically if non-empty)\n      try { fs.rmdirSync(path.join(this.projectRoot, reg.skillsTarget)); } catch { /* not empty or missing */ }\n    }\n\n    // Remove canonical symlinks\n    const canonicalDir = path.join(this.projectRoot, CANONICAL_SKILLS_DIR);\n    for (const name of skillNames) {\n      const link = path.join(canonicalDir, name);\n      try { fs.unlinkSync(link); removed = true; } catch { /* doesn't exist */ }\n    }\n    // Remove empty dirs (rmdirSync fails atomically if non-empty)\n    try { fs.rmdirSync(canonicalDir); } catch { /* not empty or missing */ }\n    try { fs.rmdirSync(path.join(this.projectRoot, '.agents')); } catch { /* not empty or missing */ }\n\n    return removed;\n  }\n\n  /** Remove Myco entries from project .gitignore. */\n  private cleanGitignore(): void {\n    const gitignorePath = path.join(this.projectRoot, '.gitignore');\n    let content = '';\n    try { content = fs.readFileSync(gitignorePath, 'utf-8'); } catch { return; }\n\n    const cleaned = this.stripMycoGitignoreBlock(content, this.listSkillDirs()).trim();\n    if (cleaned) {\n      fs.writeFileSync(gitignorePath, cleaned + '\\n', 'utf-8');\n    } else {\n      try { fs.unlinkSync(gitignorePath); } catch { /* ignore */ }\n    }\n  }\n}\n\n/**\n * Create agent-specific symlinks for a skill in `.agents/skills/<name>`.\n *\n * Reads all symbiont manifests to find skillsTarget paths that differ\n * from the canonical `.agents/skills/` directory, then creates relative\n * symlinks from each target to the canonical location.\n *\n * Called by vault_write_skill after writing a generated skill to disk.\n * Also handles removal: when `remove` is true, deletes the symlinks.\n */\nexport function syncSkillSymlinks(\n  projectRoot: string,\n  skillName: string,\n  opts?: { remove?: boolean },\n): void {\n  // Resolve manifests dir — try sibling (source layout) then dist layout\n  // (tsup bundles into dist/chunk-*.js, but manifests are at dist/src/symbionts/manifests/)\n  const selfDir = path.dirname(new URL(import.meta.url).pathname);\n  const candidates = [\n    path.join(selfDir, 'manifests'),\n    path.join(selfDir, 'src', 'symbionts', 'manifests'),\n  ];\n  const manifestDir = candidates.find((d) => fs.existsSync(d));\n  if (!manifestDir) return;\n\n  const targets = new Set<string>();\n  for (const file of fs.readdirSync(manifestDir).filter((f) => f.endsWith('.yaml'))) {\n    try {\n      const content = fs.readFileSync(path.join(manifestDir, file), 'utf-8');\n      const match = content.match(/skillsTarget:\\s*(.+)/);\n      if (match) targets.add(match[1].trim());\n    } catch { /* skip unreadable manifests */ }\n  }\n\n  for (const target of targets) {\n    if (target === CANONICAL_SKILLS_DIR) continue; // canonical is the source, not a link target\n\n    const agentSkillsDir = path.join(projectRoot, target);\n    const linkPath = path.join(agentSkillsDir, skillName);\n\n    if (opts?.remove) {\n      try { fs.unlinkSync(linkPath); } catch { /* doesn't exist */ }\n      try { fs.rmdirSync(agentSkillsDir); } catch { /* not empty or missing */ }\n    } else {\n      fs.mkdirSync(agentSkillsDir, { recursive: true });\n      const canonicalDir = path.join(projectRoot, CANONICAL_SKILLS_DIR);\n      const relTarget = path.join(path.relative(agentSkillsDir, canonicalDir), skillName);\n      ensureSymlink(linkPath, relTarget);\n      // Ensure a local .gitignore ignores all symlinks in this directory.\n      // Localized to the agent's skills dir — doesn't pollute the project .gitignore.\n      ensureLocalSkillsGitignore(agentSkillsDir);\n    }\n  }\n}\n\n/** Content for the local .gitignore that ignores Myco-created symlinks. */\nconst LOCAL_SKILLS_GITIGNORE = `# Myco-managed symlinks — generated skills are symlinked here automatically.\n# The canonical location for all skills is .agents/skills/.\n#\n# To add your own skill to this directory, un-ignore it:\n#   !my-skill\n*\n!.gitignore\n`;\n\n/**\n * Write a .gitignore inside an agent's skills directory that ignores all\n * symlinks Myco creates there. Idempotent — skips if already present.\n */\nfunction ensureLocalSkillsGitignore(agentSkillsDir: string): void {\n  const gitignorePath = path.join(agentSkillsDir, '.gitignore');\n  try {\n    if (fs.readFileSync(gitignorePath, 'utf-8') === LOCAL_SKILLS_GITIGNORE) return;\n  } catch { /* doesn't exist — proceed */ }\n  fs.writeFileSync(gitignorePath, LOCAL_SKILLS_GITIGNORE, 'utf-8');\n}\n","/** TOML section header pattern. */\nconst TOML_SECTION_RE = /^\\[([^\\]]+)\\]/;\n\n/**\n * Find where a named TOML section ends.\n *\n * Walks forward from `searchStart` until it hits a section header that is\n * NEITHER the named section itself NOR any of its subtables (headers that\n * start with `${sectionName}.`). Returns `raw.length` if the section extends\n * to the end of the file.\n */\nexport function findTomlSectionEnd(\n  raw: string,\n  searchStart: number,\n  sectionName: string,\n): number {\n  const subsectionPrefix = `${sectionName}.`;\n  const rawLines = raw.slice(searchStart).split('\\n');\n  let offset = searchStart;\n  for (const line of rawLines) {\n    offset += line.length + 1;\n    const m = line.match(TOML_SECTION_RE);\n    if (m && !m[1].startsWith(subsectionPrefix) && m[1] !== sectionName) {\n      return offset - line.length - 1;\n    }\n  }\n  return raw.length;\n}\n\n/** Format a single TOML key = value line from a JS value. Skips unsupported types. */\nfunction formatTomlScalarLine(key: string, val: unknown): string | null {\n  if (typeof val === 'string') return `${key} = \"${val}\"`;\n  if (typeof val === 'boolean') return `${key} = ${val}`;\n  if (typeof val === 'number' && Number.isFinite(val)) return `${key} = ${val}`;\n  if (Array.isArray(val)) {\n    return `${key} = [${val.map((v: unknown) => `\"${v}\"`).join(', ')}]`;\n  }\n  return null;\n}\n\n/**\n * Insert or replace a top-level TOML section with the given scalar key/value pairs.\n *\n * - Scalar values (string, boolean, number, string[]) are written as `key = value`.\n * - Nested objects are ignored — use {@link buildTomlMcpSection} or call\n *   `upsertTomlSection` once per subtable if you need nested tables.\n * - Idempotent: running twice with the same inputs produces identical output.\n * - Preserves content before and after the section.\n */\nexport function upsertTomlSection(\n  raw: string,\n  sectionName: string,\n  values: Record<string, unknown>,\n): string {\n  const sectionHeader = `[${sectionName}]`;\n\n  const lines: string[] = [sectionHeader];\n  for (const [key, val] of Object.entries(values)) {\n    const line = formatTomlScalarLine(key, val);\n    if (line !== null) lines.push(line);\n  }\n  const block = lines.join('\\n');\n\n  if (raw.includes(sectionHeader)) {\n    const startIdx = raw.indexOf(sectionHeader);\n    const endIdx = findTomlSectionEnd(raw, startIdx + sectionHeader.length, sectionName);\n    const before = raw.slice(0, startIdx).trimEnd();\n    const after = raw.slice(endIdx);\n    const separator = before ? '\\n\\n' : '';\n    return (before + separator + block + after).trimEnd() + '\\n';\n  }\n\n  const separator = raw.trim() ? '\\n\\n' : '';\n  return (raw.trimEnd() + separator + block).trimEnd() + '\\n';\n}\n\n/**\n * Remove specific keys from a top-level TOML section.\n *\n * - Only the listed keys are removed. Other keys in the section are preserved.\n * - If the section ends up with no content after removal, the whole section\n *   (header and body) is stripped.\n * - Returns the updated string; equal to the input if no changes were made.\n */\nexport function removeTomlSectionKeys(\n  raw: string,\n  sectionName: string,\n  keys: string[],\n): string {\n  const sectionHeader = `[${sectionName}]`;\n  if (!raw.includes(sectionHeader)) return raw;\n\n  const startIdx = raw.indexOf(sectionHeader);\n  const endIdx = findTomlSectionEnd(raw, startIdx + sectionHeader.length, sectionName);\n  const sectionBody = raw.slice(startIdx + sectionHeader.length, endIdx);\n\n  const keyRes = keys.map((k) => new RegExp(`^\\\\s*${escapeRegExp(k)}\\\\s*=`));\n  const bodyLines = sectionBody.split('\\n');\n  const kept: string[] = [];\n  let removedAny = false;\n  let subtableSeen = false;\n  for (const line of bodyLines) {\n    // Once we hit a subtable header, everything after stays (keys belong to the parent)\n    if (subtableSeen || TOML_SECTION_RE.test(line.trim())) {\n      subtableSeen = true;\n      kept.push(line);\n      continue;\n    }\n    if (keyRes.some((re) => re.test(line))) {\n      removedAny = true;\n      continue;\n    }\n    kept.push(line);\n  }\n  if (!removedAny) return raw;\n\n  // Determine whether the parent section still has any key = value lines.\n  const hasRemainingKeys = kept.some((line) => {\n    const trimmed = line.trim();\n    if (!trimmed || trimmed.startsWith('#')) return false;\n    if (TOML_SECTION_RE.test(trimmed)) return false;\n    return /=/.test(trimmed);\n  });\n\n  const before = raw.slice(0, startIdx).trimEnd();\n  let rebuilt: string;\n  if (hasRemainingKeys) {\n    const newBody = kept.join('\\n');\n    const separator = before ? '\\n\\n' : '';\n    rebuilt = before + separator + sectionHeader + newBody;\n  } else {\n    // Drop the header entirely; keep any trailing subtables we preserved above.\n    const trailing = kept.join('\\n').trimStart();\n    const separator = before && trailing ? '\\n\\n' : '';\n    rebuilt = before + separator + trailing;\n  }\n  return rebuilt.trimEnd() + (rebuilt.trim() ? '\\n' : '');\n}\n\nfunction escapeRegExp(s: string): string {\n  return s.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\$&');\n}\n\n/**\n * Build/update a specific mcp_servers entry in a TOML string.\n * Pure transformation — returns updated content without writing to disk.\n *\n * Handles the MCP-specific `env` subtable pattern; for plain sections use\n * {@link upsertTomlSection}.\n */\nexport function buildTomlMcpSection(\n  raw: string,\n  serverName: string,\n  server: Record<string, unknown>,\n): string {\n  const sectionName = `mcp_servers.${serverName}`;\n  const sectionHeader = `[${sectionName}]`;\n\n  // Build the TOML block for this server\n  const lines: string[] = [sectionHeader];\n  for (const [key, val] of Object.entries(server)) {\n    if (key === 'env' && typeof val === 'object' && val !== null) continue; // Handle env as subtable\n    const line = formatTomlScalarLine(key, val);\n    if (line !== null) lines.push(line);\n  }\n\n  // Add env subtable if present\n  const env = server.env as Record<string, string> | undefined;\n  if (env && Object.keys(env).length > 0) {\n    lines.push('');\n    lines.push(`[${sectionName}.env]`);\n    for (const [key, val] of Object.entries(env)) {\n      lines.push(`${key} = \"${val}\"`);\n    }\n  }\n\n  const block = lines.join('\\n');\n\n  let updated: string;\n  if (raw.includes(sectionHeader)) {\n    const startIdx = raw.indexOf(sectionHeader);\n    const endIdx = findTomlSectionEnd(raw, startIdx + sectionHeader.length, sectionName);\n    const before = raw.slice(0, startIdx).trimEnd();\n    const after = raw.slice(endIdx);\n    const separator = before ? '\\n\\n' : '';\n    updated = (before + separator + block + after).trimEnd() + '\\n';\n  } else {\n    // Append new section\n    const separator = raw.trim() ? '\\n\\n' : '';\n    updated = (raw.trimEnd() + separator + block).trimEnd() + '\\n';\n  }\n\n  return updated;\n}\n","import { deepMerge, isPlainObject } from '../utils/deep-merge.js';\n\n/** Symbiont settings merge uses union semantics: arrays are concatenated and deduped. */\nexport function deepMergeSettings(\n  target: Record<string, unknown>,\n  source: Record<string, unknown>,\n): Record<string, unknown> {\n  return deepMerge(target, source, { arrayStrategy: 'union' });\n}\n\nexport { isPlainObject };\n\n/**\n * Remove values from target that match the template structure.\n * Arrays: filter out values present in the template array.\n * Objects: delete keys present in the template object, recurse into nested objects.\n * Returns true if anything was removed.\n */\nexport function deepRemoveSettings(\n  target: Record<string, unknown>,\n  template: Record<string, unknown>,\n): boolean {\n  let changed = false;\n  for (const [key, templateVal] of Object.entries(template)) {\n    const targetVal = target[key];\n    if (targetVal === undefined) continue;\n\n    if (Array.isArray(templateVal) && Array.isArray(targetVal)) {\n      // Filter out values that appear in the template array\n      const templateSet = new Set(templateVal.map(String));\n      const filtered = targetVal.filter((v) => !templateSet.has(String(v)));\n      if (filtered.length !== targetVal.length) {\n        if (filtered.length > 0) {\n          target[key] = filtered;\n        } else {\n          delete target[key];\n        }\n        changed = true;\n      }\n    } else if (isPlainObject(templateVal) && isPlainObject(targetVal)) {\n      // Recurse into nested objects, then prune if empty\n      if (deepRemoveSettings(targetVal, templateVal)) {\n        if (Object.keys(targetVal).length === 0) {\n          delete target[key];\n        }\n        changed = true;\n      }\n    } else {\n      // Scalar: delete if value matches\n      if (String(targetVal) === String(templateVal)) {\n        delete target[key];\n        changed = true;\n      }\n    }\n  }\n  return changed;\n}\n","import fs from 'node:fs';\nimport path from 'node:path';\n\nexport function readJsonFile(filePath: string): Record<string, unknown> {\n  try {\n    return JSON.parse(fs.readFileSync(filePath, 'utf-8'));\n  } catch {\n    return {};\n  }\n}\n\nexport function writeJsonFile(filePath: string, data: Record<string, unknown>): void {\n  fs.mkdirSync(path.dirname(filePath), { recursive: true });\n  fs.writeFileSync(filePath, JSON.stringify(data, null, 2) + '\\n', 'utf-8');\n}\n\n/** Write a JSON file, or delete it if the object is empty. */\nexport function writeOrDeleteJsonFile(filePath: string, data: Record<string, unknown>): void {\n  if (Object.keys(data).length === 0) {\n    try { fs.unlinkSync(filePath); } catch { /* ignore */ }\n  } else {\n    writeJsonFile(filePath, data);\n  }\n}\n","import fs from 'node:fs';\nimport path from 'node:path';\n\nconst DEFAULT_AGENTS_STARTER = `# Project Rules\n\n<!-- This starter file was created by Myco. Replace it with your project's rules and conventions. -->\n\nRules haven't been defined yet. Use the /rules skill to generate project rules, or edit this file directly.\n`;\n\n/**\n * Check if a command string belongs to Myco.\n *\n * Three legacy shapes we still need to recognize so uninstall / re-install\n * can strip old entries cleanly:\n *   1. `.agents/myco-run.cjs`  — current hook guard entry point\n *   2. `.agents/myco-hook.cjs` — prior cross-platform guard (pre-rename)\n *   3. `myco-run` bare         — published MCP entry point and old shell shim\n *\n * Any of these signals \"this is our group, safe to replace on reinstall.\"\n */\nexport function isMycoHookCommand(command: string): boolean {\n  return (\n    command.includes('.agents/myco-run.cjs') ||\n    command.includes('.agents/myco-hook.cjs') ||\n    command.startsWith('myco-run')\n  );\n}\n\n/**\n * Check if a hook group is Myco-owned.\n * Handles both nested format (Claude Code, Codex, etc.) and flat format (Windsurf).\n *\n * Nested: { hooks: [{ command: \"cd \\\"$(git rev-parse ...)\\\" && node .agents/myco-run.cjs ...\" }] }\n * Flat:   { command: \"cd \\\"$(git rev-parse ...)\\\" && node .agents/myco-run.cjs ...\" }\n */\nexport function isMycoHookGroup(group: Record<string, unknown>): boolean {\n  // Nested format: { hooks: [{ command: \"...\" }] }\n  if (Array.isArray(group.hooks) && group.hooks.some((h: { command?: string }) => h.command && isMycoHookCommand(h.command))) return true;\n  // Flat format: { command: \"...\" }\n  if (typeof group.command === 'string' && isMycoHookCommand(group.command)) return true;\n  return false;\n}\n\n/**\n * Create a starter AGENTS.md if the project doesn't have one.\n * Idempotent — skips if AGENTS.md already exists.\n */\nexport function ensureAgentsMd(projectRoot: string, packageRoot: string): void {\n  const agentsMdPath = path.join(projectRoot, 'AGENTS.md');\n  if (fs.existsSync(agentsMdPath)) return;\n\n  const candidates = [\n    path.join(packageRoot, 'src/symbionts/templates/agents-starter.md'),\n    path.join(packageRoot, 'dist/src/symbionts/templates/agents-starter.md'),\n  ];\n  for (const p of candidates) {\n    try {\n      const content = fs.readFileSync(p, 'utf-8');\n      fs.writeFileSync(agentsMdPath, content, 'utf-8');\n      return;\n    } catch { /* try next */ }\n  }\n\n  fs.writeFileSync(agentsMdPath, DEFAULT_AGENTS_STARTER, 'utf-8');\n}\n\nexport function ensureSymlink(linkPath: string, target: string): void {\n  try {\n    if (fs.readlinkSync(linkPath) === target) return;\n  } catch { /* does not exist or is not a symlink — proceed */ }\n  try { fs.rmSync(linkPath, { recursive: true, force: true }); } catch { /* ignore */ }\n  fs.symlinkSync(target, 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package/dist/chunk-XL75KZGI.js.map

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-{"version":3,"sources":["../src/hooks/capture-rules.ts","../src/hooks/transcript-meta.ts"],"sourcesContent":["/**\n * Generic capture-rule evaluator.\n *\n * Each symbiont manifest declares `capture.rules` — a list of `{ event,\n * when, action }` records that describe how Myco should filter captured\n * events for that agent. This module loads rules from every manifest\n * in one place and exposes a pure evaluator the hook handlers call\n * without knowing anything symbiont-specific.\n *\n * Adding a new symbiont's capture behavior is a YAML-only change: edit\n * that agent's manifest file, no hook or evaluator changes needed.\n *\n * Rule scope (`this_agent` vs `any_agent`) lets rules opt into running\n * even when agent detection itself fails — useful for ephemeral\n * sub-invocations that legitimately lack the signals we key on.\n *\n * Conditions should prefer structural signals (e.g.,\n * `transcript_path_missing`) over text matching so rules stay robust\n * across upstream agent updates.\n */\n\nimport type { CaptureRule, SymbiontManifest } from '../symbionts/manifest-schema.js';\nimport { getAtPath } from '../utils/dot-path.js';\n\n/** Structured context a rule can match against at UserPromptSubmit time. */\nexport interface UserPromptRuleContext {\n  /** The user prompt text as received from the hook. */\n  prompt: string;\n  /** Transcript path from the hook payload, if any. Empty/undefined signals an ephemeral session. */\n  transcriptPath?: string;\n  /** Parsed first JSON line (session_meta) from the transcript, if available. */\n  transcriptMeta?: Record<string, unknown>;\n}\n\n/** Structured context a rule can match against at SessionStart time. */\nexport interface SessionStartRuleContext {\n  /** Transcript path from the hook payload, if any. Empty/undefined signals an ephemeral session. */\n  transcriptPath?: string;\n  /** Parsed first JSON line (session_meta) from the transcript, if available. */\n  transcriptMeta?: Record<string, unknown>;\n}\n\n/** Outcome of evaluating user_prompt rules. */\nexport type UserPromptDecision =\n  | { action: 'pass'; prompt: string }\n  | { action: 'rewrite'; prompt: string; reason?: string }\n  | { action: 'drop'; reason?: string };\n\n/** Outcome of evaluating session capture rules. No rewrite — there's no prompt text yet. */\nexport type SessionStartDecision =\n  | { action: 'pass' }\n  | { action: 'drop'; reason?: string };\n\n/**\n * Evaluate all user_prompt rules from every manifest against one context.\n *\n * Rules are checked in declaration order, first-match-wins. A rule only\n * fires when:\n *   1. its `event` is `user_prompt`,\n *   2. its scope permits it (see scope semantics in manifest-schema.ts),\n *   3. every condition in its `when` block matches the context.\n *\n * If no rule matches, the prompt passes through unchanged.\n */\nexport function evaluateUserPromptRules(\n  manifests: SymbiontManifest[],\n  detectedAgent: string,\n  ctx: UserPromptRuleContext,\n): UserPromptDecision {\n  for (const manifest of manifests) {\n    const rules = manifest.capture?.rules ?? [];\n    for (const rule of rules) {\n      if (rule.event !== 'user_prompt') continue;\n      if (!scopePermits(rule, manifest.name, detectedAgent)) continue;\n      if (!whenMatches(rule, ctx)) continue;\n      return applyAction(rule, ctx);\n    }\n  }\n  return { action: 'pass', prompt: ctx.prompt };\n}\n\n/**\n * Evaluate all session_start rules from every manifest.\n *\n * Same first-match-wins semantics as user_prompt rules. The only action\n * session_start rules can take is `drop` — text rewriting doesn't apply\n * because there's no prompt text at SessionStart time. Rules that\n * specify prompt-based conditions (prompt_starts_with / prompt_contains)\n * match against an empty prompt here, so they'll never fire on the\n * session_start pass.\n *\n * Callers should skip session registration when the result is `drop`.\n */\nexport function evaluateSessionStartRules(\n  manifests: SymbiontManifest[],\n  detectedAgent: string,\n  ctx: SessionStartRuleContext,\n): SessionStartDecision {\n  for (const manifest of manifests) {\n    const rules = manifest.capture?.rules ?? [];\n    for (const rule of rules) {\n      if (rule.event !== 'session_start') continue;\n      if (!scopePermits(rule, manifest.name, detectedAgent)) continue;\n      if (!whenMatches(rule, { prompt: '', transcriptPath: ctx.transcriptPath, transcriptMeta: ctx.transcriptMeta })) continue;\n      if (rule.action === 'drop') {\n        return { action: 'drop', reason: rule.reason };\n      }\n      // rewrite_prompt is meaningless at session_start — skip and let\n      // later rules have a chance to match.\n    }\n  }\n  return { action: 'pass' };\n}\n\n/**\n * Evaluate whether a session should be materialized at a lifecycle boundary.\n *\n * SessionStart uses this before registering a session row. Stop processing uses\n * the same decision before transcript-backed capture or stop-driven\n * auto-registration. Keeping both boundaries on the same manifest-driven\n * evaluator makes the rule sustainable for every symbiont, not just the one\n * that first exposed the gap.\n */\nexport function evaluateSessionCaptureRules(\n  manifests: SymbiontManifest[],\n  detectedAgent: string,\n  ctx: SessionStartRuleContext,\n): SessionStartDecision {\n  return evaluateSessionStartRules(manifests, detectedAgent, ctx);\n}\n\nfunction scopePermits(rule: CaptureRule, owningAgent: string, detectedAgent: string): boolean {\n  if (rule.scope === 'any_agent') return true;\n  return owningAgent === detectedAgent;\n}\n\nfunction whenMatches(rule: CaptureRule, ctx: UserPromptRuleContext): boolean {\n  const {\n    prompt_starts_with,\n    prompt_contains,\n    transcript_path_missing,\n    transcript_meta_field_exists,\n    transcript_meta_field_equals,\n  } = rule.when;\n\n  // Refuse rules with no conditions — prevents a mistyped YAML file from\n  // accidentally creating a blanket \"drop everything\" rule.\n  const hasAnyCondition =\n    prompt_starts_with !== undefined ||\n    prompt_contains !== undefined ||\n    transcript_path_missing !== undefined ||\n    transcript_meta_field_exists !== undefined ||\n    transcript_meta_field_equals !== undefined;\n  if (!hasAnyCondition) return false;\n\n  if (prompt_starts_with && !ctx.prompt.startsWith(prompt_starts_with)) return false;\n  if (prompt_contains && !ctx.prompt.includes(prompt_contains)) return false;\n\n  if (transcript_path_missing !== undefined) {\n    const missing = !ctx.transcriptPath || ctx.transcriptPath.length === 0;\n    if (transcript_path_missing && !missing) return false;\n    if (!transcript_path_missing && missing) return false;\n  }\n\n  if (transcript_meta_field_exists !== undefined) {\n    if (!ctx.transcriptMeta) return false;\n    if (!getAtPath(ctx.transcriptMeta, transcript_meta_field_exists)) return false;\n  }\n\n  if (transcript_meta_field_equals !== undefined) {\n    if (!ctx.transcriptMeta) return false;\n    if (getAtPath(ctx.transcriptMeta, transcript_meta_field_equals.path) !== transcript_meta_field_equals.value) {\n      return false;\n    }\n  }\n\n  return true;\n}\n\nfunction applyAction(rule: CaptureRule, ctx: UserPromptRuleContext): UserPromptDecision {\n  if (rule.action === 'drop') {\n    return { action: 'drop', reason: rule.reason };\n  }\n  // rewrite_prompt — keep only the substring after the extract_after marker.\n  // If the marker isn't in the prompt, fall through to `pass` so we don't\n  // accidentally blank out a prompt that turned out not to match after all.\n  const marker = rule.extract_after;\n  if (!marker) return { action: 'pass', prompt: ctx.prompt };\n  const idx = ctx.prompt.indexOf(marker);\n  if (idx === -1) return { action: 'pass', prompt: ctx.prompt };\n  const after = ctx.prompt.slice(idx + marker.length);\n  const next = rule.trim ? after.trim() : after;\n  if (!next) return { action: 'pass', prompt: ctx.prompt };\n  return { action: 'rewrite', prompt: next, reason: rule.reason };\n}\n","/**\n * Read the first JSON line (session_meta) from an agent's transcript file.\n *\n * Every supported agent writes a JSONL transcript where the first entry\n * is a `session_meta` record containing session identity, source info,\n * model, and other structural signals. This reader extracts that record\n * so capture rules can make decisions based on it — e.g., detecting\n * sub-agent thread spawns that have real transcript files but aren't\n * user-initiated sessions.\n *\n * Returns the parsed `payload` object from the session_meta entry, or\n * null if the file doesn't exist, isn't readable, or doesn't contain\n * valid session_meta JSON.\n */\n\nimport fs from 'node:fs';\n\n/**\n * Read and parse the session_meta payload from a transcript file.\n *\n * @param transcriptPath - Absolute path to the JSONL transcript.\n * @returns The session_meta payload object, or null on any failure.\n */\nexport function readTranscriptMeta(transcriptPath: string): Record<string, unknown> | null {\n  try {\n    const fd = fs.openSync(transcriptPath, 'r');\n    try {\n      // Read enough bytes for the first line. Session meta can be large\n      // when it embeds the full system prompt (base_instructions) — Codex\n      // sessions routinely exceed 16 KB. 128 KB covers all known cases.\n      const buf = Buffer.alloc(131072);\n      const bytesRead = fs.readSync(fd, buf, 0, buf.length, 0);\n      if (bytesRead === 0) return null;\n\n      const chunk = buf.toString('utf-8', 0, bytesRead);\n      const newlineIdx = chunk.indexOf('\\n');\n      const firstLine = newlineIdx >= 0 ? chunk.slice(0, newlineIdx) : chunk;\n      if (!firstLine) return null;\n\n      const entry = JSON.parse(firstLine);\n\n      // session_meta entries have { type: \"session_meta\", payload: {...} }\n      if (entry?.type === 'session_meta' && typeof entry.payload === 'object') {\n        return entry.payload as Record<string, unknown>;\n      }\n\n      // Some agents may write the meta directly without the wrapper\n      if (typeof entry === 'object' && entry !== null) {\n        return entry as Record<string, unknown>;\n      }\n\n      return null;\n    } finally {\n      fs.closeSync(fd);\n    }\n  } catch {\n    return null;\n  }\n}\n"],"mappings":";;;;;;AAgEO,SAAS,wBACd,WACA,eACA,KACoB;AACpB,aAAW,YAAY,WAAW;AAChC,UAAM,QAAQ,SAAS,SAAS,SAAS,CAAC;AAC1C,eAAW,QAAQ,OAAO;AACxB,UAAI,KAAK,UAAU,cAAe;AAClC,UAAI,CAAC,aAAa,MAAM,SAAS,MAAM,aAAa,EAAG;AACvD,UAAI,CAAC,YAAY,MAAM,GAAG,EAAG;AAC7B,aAAO,YAAY,MAAM,GAAG;AAAA,IAC9B;AAAA,EACF;AACA,SAAO,EAAE,QAAQ,QAAQ,QAAQ,IAAI,OAAO;AAC9C;AAcO,SAAS,0BACd,WACA,eACA,KACsB;AACtB,aAAW,YAAY,WAAW;AAChC,UAAM,QAAQ,SAAS,SAAS,SAAS,CAAC;AAC1C,eAAW,QAAQ,OAAO;AACxB,UAAI,KAAK,UAAU,gBAAiB;AACpC,UAAI,CAAC,aAAa,MAAM,SAAS,MAAM,aAAa,EAAG;AACvD,UAAI,CAAC,YAAY,MAAM,EAAE,QAAQ,IAAI,gBAAgB,IAAI,gBAAgB,gBAAgB,IAAI,eAAe,CAAC,EAAG;AAChH,UAAI,KAAK,WAAW,QAAQ;AAC1B,eAAO,EAAE,QAAQ,QAAQ,QAAQ,KAAK,OAAO;AAAA,MAC/C;AAAA,IAGF;AAAA,EACF;AACA,SAAO,EAAE,QAAQ,OAAO;AAC1B;AAWO,SAAS,4BACd,WACA,eACA,KACsB;AACtB,SAAO,0BAA0B,WAAW,eAAe,GAAG;AAChE;AAEA,SAAS,aAAa,MAAmB,aAAqB,eAAgC;AAC5F,MAAI,KAAK,UAAU,YAAa,QAAO;AACvC,SAAO,gBAAgB;AACzB;AAEA,SAAS,YAAY,MAAmB,KAAqC;AAC3E,QAAM;AAAA,IACJ;AAAA,IACA;AAAA,IACA;AAAA,IACA;AAAA,IACA;AAAA,EACF,IAAI,KAAK;AAIT,QAAM,kBACJ,uBAAuB,UACvB,oBAAoB,UACpB,4BAA4B,UAC5B,iCAAiC,UACjC,iCAAiC;AACnC,MAAI,CAAC,gBAAiB,QAAO;AAE7B,MAAI,sBAAsB,CAAC,IAAI,OAAO,WAAW,kBAAkB,EAAG,QAAO;AAC7E,MAAI,mBAAmB,CAAC,IAAI,OAAO,SAAS,eAAe,EAAG,QAAO;AAErE,MAAI,4BAA4B,QAAW;AACzC,UAAM,UAAU,CAAC,IAAI,kBAAkB,IAAI,eAAe,WAAW;AACrE,QAAI,2BAA2B,CAAC,QAAS,QAAO;AAChD,QAAI,CAAC,2BAA2B,QAAS,QAAO;AAAA,EAClD;AAEA,MAAI,iCAAiC,QAAW;AAC9C,QAAI,CAAC,IAAI,eAAgB,QAAO;AAChC,QAAI,CAAC,UAAU,IAAI,gBAAgB,4BAA4B,EAAG,QAAO;AAAA,EAC3E;AAEA,MAAI,iCAAiC,QAAW;AAC9C,QAAI,CAAC,IAAI,eAAgB,QAAO;AAChC,QAAI,UAAU,IAAI,gBAAgB,6BAA6B,IAAI,MAAM,6BAA6B,OAAO;AAC3G,aAAO;AAAA,IACT;AAAA,EACF;AAEA,SAAO;AACT;AAEA,SAAS,YAAY,MAAmB,KAAgD;AACtF,MAAI,KAAK,WAAW,QAAQ;AAC1B,WAAO,EAAE,QAAQ,QAAQ,QAAQ,KAAK,OAAO;AAAA,EAC/C;AAIA,QAAM,SAAS,KAAK;AACpB,MAAI,CAAC,OAAQ,QAAO,EAAE,QAAQ,QAAQ,QAAQ,IAAI,OAAO;AACzD,QAAM,MAAM,IAAI,OAAO,QAAQ,MAAM;AACrC,MAAI,QAAQ,GAAI,QAAO,EAAE,QAAQ,QAAQ,QAAQ,IAAI,OAAO;AAC5D,QAAM,QAAQ,IAAI,OAAO,MAAM,MAAM,OAAO,MAAM;AAClD,QAAM,OAAO,KAAK,OAAO,MAAM,KAAK,IAAI;AACxC,MAAI,CAAC,KAAM,QAAO,EAAE,QAAQ,QAAQ,QAAQ,IAAI,OAAO;AACvD,SAAO,EAAE,QAAQ,WAAW,QAAQ,MAAM,QAAQ,KAAK,OAAO;AAChE;;;ACnLA,OAAO,QAAQ;AAQR,SAAS,mBAAmB,gBAAwD;AACzF,MAAI;AACF,UAAM,KAAK,GAAG,SAAS,gBAAgB,GAAG;AAC1C,QAAI;AAIF,YAAM,MAAM,OAAO,MAAM,MAAM;AAC/B,YAAM,YAAY,GAAG,SAAS,IAAI,KAAK,GAAG,IAAI,QAAQ,CAAC;AACvD,UAAI,cAAc,EAAG,QAAO;AAE5B,YAAM,QAAQ,IAAI,SAAS,SAAS,GAAG,SAAS;AAChD,YAAM,aAAa,MAAM,QAAQ,IAAI;AACrC,YAAM,YAAY,cAAc,IAAI,MAAM,MAAM,GAAG,UAAU,IAAI;AACjE,UAAI,CAAC,UAAW,QAAO;AAEvB,YAAM,QAAQ,KAAK,MAAM,SAAS;AAGlC,UAAI,OAAO,SAAS,kBAAkB,OAAO,MAAM,YAAY,UAAU;AACvE,eAAO,MAAM;AAAA,MACf;AAGA,UAAI,OAAO,UAAU,YAAY,UAAU,MAAM;AAC/C,eAAO;AAAA,MACT;AAEA,aAAO;AAAA,IACT,UAAE;AACA,SAAG,UAAU,EAAE;AAAA,IACjB;AAAA,EACF,QAAQ;AACN,WAAO;AAAA,EACT;AACF;","names":[]}