@goondocks/myco 0.19.6 → 0.20.1

package/dist/chunk-AULBWINA.js

@@ -1,227 +0,0 @@
-import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
-import {
-  getDatabase
-} from "./chunk-MYX5NCRH.js";
-import {
-  DEFAULT_MACHINE_ID
-} from "./chunk-I54KLC6H.js";
-
-// src/daemon/team-context.ts
-var teamSyncEnabled = false;
-var teamMachineId = DEFAULT_MACHINE_ID;
-function initTeamContext(enabled, machineId) {
-  teamSyncEnabled = enabled;
-  teamMachineId = machineId;
-}
-function isTeamSyncEnabled() {
-  return teamSyncEnabled;
-}
-function getTeamMachineId() {
-  return teamMachineId;
-}
-
-// src/db/queries/team-outbox.ts
-var BURST_BATCH_SIZE = 200;
-var SENT_PRUNE_AGE_SECONDS = 86400;
-var MAX_OUTBOX_RETRIES = 10;
-var MS_PER_SECOND = 1e3;
-var OUTBOX_COLUMNS = [
-  "id",
-  "table_name",
-  "row_id",
-  "operation",
-  "payload",
-  "machine_id",
-  "created_at",
-  "sent_at",
-  "retry_count",
-  "last_attempt_at"
-];
-var SELECT_COLUMNS = OUTBOX_COLUMNS.join(", ");
-function toOutboxRow(row) {
-  return {
-    id: row.id,
-    table_name: row.table_name,
-    row_id: row.row_id,
-    operation: row.operation,
-    payload: row.payload,
-    machine_id: row.machine_id,
-    created_at: row.created_at,
-    sent_at: row.sent_at ?? null,
-    retry_count: row.retry_count ?? 0,
-    last_attempt_at: row.last_attempt_at ?? null
-  };
-}
-function syncRow(tableName, row) {
-  if (!isTeamSyncEnabled()) return;
-  enqueueOutbox({
-    table_name: tableName,
-    row_id: String(row.id),
-    payload: JSON.stringify(row),
-    machine_id: getTeamMachineId(),
-    created_at: row.created_at ?? Math.floor(Date.now() / 1e3)
-  });
-}
-function enqueueOutbox(data) {
-  const db = getDatabase();
-  const info = db.prepare(
-    `INSERT INTO team_outbox (
-       table_name, row_id, operation, payload, machine_id, created_at
-     ) VALUES (?, ?, ?, ?, ?, ?)`
-  ).run(
-    data.table_name,
-    data.row_id,
-    data.operation ?? "upsert",
-    data.payload,
-    data.machine_id,
-    data.created_at
-  );
-  const id = Number(info.lastInsertRowid);
-  return toOutboxRow(
-    db.prepare(`SELECT ${SELECT_COLUMNS} FROM team_outbox WHERE id = ?`).get(id)
-  );
-}
-function listPending(limit) {
-  const db = getDatabase();
-  const rows = db.prepare(
-    `SELECT ${SELECT_COLUMNS}
-     FROM team_outbox
-     WHERE sent_at IS NULL AND retry_count < ?
-     ORDER BY created_at ASC
-     LIMIT ?`
-  ).all(MAX_OUTBOX_RETRIES, limit ?? BURST_BATCH_SIZE);
-  return rows.map(toOutboxRow);
-}
-function markSent(ids, sentAt) {
-  if (ids.length === 0) return;
-  const db = getDatabase();
-  const placeholders = ids.map(() => "?").join(", ");
-  db.prepare(
-    `UPDATE team_outbox
-     SET sent_at = ?
-     WHERE id IN (${placeholders})`
-  ).run(sentAt, ...ids);
-}
-function incrementRetryCount(ids, attemptAt) {
-  if (ids.length === 0) return [];
-  const db = getDatabase();
-  const placeholders = ids.map(() => "?").join(", ");
-  db.prepare(
-    `UPDATE team_outbox
-     SET retry_count = retry_count + 1, last_attempt_at = ?
-     WHERE id IN (${placeholders})`
-  ).run(attemptAt, ...ids);
-  const deadLettered = db.prepare(
-    `SELECT id FROM team_outbox
-     WHERE id IN (${placeholders}) AND retry_count >= ?`
-  ).all(...ids, MAX_OUTBOX_RETRIES);
-  return deadLettered.map((r) => r.id);
-}
-function retryDeadLettered() {
-  const db = getDatabase();
-  const info = db.prepare(
-    `UPDATE team_outbox
-     SET retry_count = 0, last_attempt_at = NULL
-     WHERE sent_at IS NULL AND retry_count >= ?`
-  ).run(MAX_OUTBOX_RETRIES);
-  return info.changes;
-}
-function countDeadLettered() {
-  const db = getDatabase();
-  const row = db.prepare(
-    `SELECT COUNT(*) as count FROM team_outbox WHERE sent_at IS NULL AND retry_count >= ?`
-  ).get(MAX_OUTBOX_RETRIES);
-  return row.count;
-}
-function pruneOld() {
-  const db = getDatabase();
-  const cutoff = Math.floor(Date.now() / MS_PER_SECOND) - SENT_PRUNE_AGE_SECONDS;
-  const info = db.prepare(
-    `DELETE FROM team_outbox
-     WHERE sent_at IS NOT NULL AND sent_at < ?`
-  ).run(cutoff);
-  return info.changes;
-}
-function countPending() {
-  const db = getDatabase();
-  const row = db.prepare(
-    `SELECT COUNT(*) as count FROM team_outbox WHERE sent_at IS NULL AND retry_count < ?`
-  ).get(MAX_OUTBOX_RETRIES);
-  return row.count;
-}
-var BACKFILL_TABLES = [
-  "sessions",
-  "prompt_batches",
-  "spores",
-  "entities",
-  "graph_edges",
-  "resolution_events",
-  "plans",
-  "artifacts",
-  "digest_extracts",
-  "skill_candidates",
-  "skill_records"
-];
-var BACKFILL_TABLE_SET = new Set(BACKFILL_TABLES);
-function markSourceRowsSynced(records, syncedAt) {
-  const db = getDatabase();
-  const byTable = /* @__PURE__ */ new Map();
-  for (const rec of records) {
-    if (!BACKFILL_TABLE_SET.has(rec.table_name)) continue;
-    const ids = byTable.get(rec.table_name) ?? [];
-    ids.push(rec.row_id);
-    byTable.set(rec.table_name, ids);
-  }
-  for (const [table, ids] of byTable) {
-    const placeholders = ids.map(() => "?").join(", ");
-    db.prepare(
-      `UPDATE ${table} SET synced_at = ? WHERE id IN (${placeholders}) AND synced_at IS NULL`
-    ).run(syncedAt, ...ids);
-  }
-}
-function backfillUnsynced(machineId) {
-  const db = getDatabase();
-  let total = 0;
-  const now = Math.floor(Date.now() / MS_PER_SECOND);
-  for (const table of BACKFILL_TABLES) {
-    const rows = db.prepare(
-      `SELECT * FROM ${table}
-       WHERE synced_at IS NULL
-       AND NOT EXISTS (
-         SELECT 1 FROM team_outbox
-         WHERE team_outbox.table_name = ? AND team_outbox.row_id = CAST(${table}.id AS TEXT)
-       )`
-    ).all(table);
-    if (rows.length === 0) continue;
-    const insertBatch = db.transaction((batchRows) => {
-      const stmt = db.prepare(
-        `INSERT INTO team_outbox (table_name, row_id, operation, payload, machine_id, created_at)
-         VALUES (?, ?, 'upsert', ?, ?, ?)`
-      );
-      for (const row of batchRows) {
-        stmt.run(table, String(row.id), JSON.stringify(row), machineId, now);
-      }
-    });
-    insertBatch(rows);
-    total += rows.length;
-  }
-  return total;
-}
-
-export {
-  initTeamContext,
-  isTeamSyncEnabled,
-  getTeamMachineId,
-  syncRow,
-  enqueueOutbox,
-  listPending,
-  markSent,
-  incrementRetryCount,
-  retryDeadLettered,
-  countDeadLettered,
-  pruneOld,
-  countPending,
-  markSourceRowsSynced,
-  backfillUnsynced
-};
-//# sourceMappingURL=chunk-AULBWINA.js.map

package/dist/chunk-AULBWINA.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/daemon/team-context.ts","../src/db/queries/team-outbox.ts"],"sourcesContent":["/**\n * Module-level state for team sync.\n *\n * Initialized once by the daemon on startup. Query modules import\n * `isTeamSyncEnabled()` and `getTeamMachineId()` to decide whether\n * to enqueue outbox records on write.\n */\n\nimport { SYNC_PROTOCOL_VERSION, DEFAULT_MACHINE_ID } from '@myco/constants.js';\n\n// ---------------------------------------------------------------------------\n// Module state\n// ---------------------------------------------------------------------------\n\nlet teamSyncEnabled = false;\nlet teamMachineId = DEFAULT_MACHINE_ID;\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Initialize team context. Called once on daemon startup.\n */\nexport function initTeamContext(enabled: boolean, machineId: string): void {\n  teamSyncEnabled = enabled;\n  teamMachineId = machineId;\n}\n\n/**\n * Whether team sync is currently enabled.\n *\n * Query modules check this before enqueuing outbox records.\n */\nexport function isTeamSyncEnabled(): boolean {\n  return teamSyncEnabled;\n}\n\n/**\n * The machine ID for this instance.\n */\nexport function getTeamMachineId(): string {\n  return teamMachineId;\n}\n\n/**\n * The sync protocol version in use.\n */\nexport function getTeamSyncProtocolVersion(): number {\n  return SYNC_PROTOCOL_VERSION;\n}\n\n/**\n * Reset team context (for testing).\n */\nexport function resetTeamContext(): void {\n  teamSyncEnabled = false;\n  teamMachineId = DEFAULT_MACHINE_ID;\n}\n","/**\n * Team outbox CRUD query helpers.\n *\n * The outbox pattern: write paths enqueue records here when team sync is enabled.\n * The sync client flushes pending records in batches to the Cloudflare Worker.\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport { getDatabase } from '@myco/db/client.js';\nimport { isTeamSyncEnabled, getTeamMachineId } from '@myco/daemon/team-context.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Max records returned per listPending call. */\nconst BURST_BATCH_SIZE = 200;\n\n/** Age in seconds after which sent records are pruned (24 hours). */\nconst SENT_PRUNE_AGE_SECONDS = 86_400;\n\n/** Max retry attempts before a record is dead-lettered. */\nexport const MAX_OUTBOX_RETRIES = 10;\n\n/** Milliseconds-per-second multiplier for epoch math. */\nconst MS_PER_SECOND = 1000;\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Fields required when enqueuing an outbox record. */\nexport interface OutboxInsert {\n  table_name: string;\n  row_id: string;\n  operation?: string;\n  payload: string;\n  machine_id: string;\n  created_at: number;\n}\n\n/** Row shape returned from outbox queries. */\nexport interface OutboxRow {\n  id: number;\n  table_name: string;\n  row_id: string;\n  operation: string;\n  payload: string;\n  machine_id: string;\n  created_at: number;\n  sent_at: number | null;\n  retry_count: number;\n  last_attempt_at: number | null;\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst OUTBOX_COLUMNS = [\n  'id',\n  'table_name',\n  'row_id',\n  'operation',\n  'payload',\n  'machine_id',\n  'created_at',\n  'sent_at',\n  'retry_count',\n  'last_attempt_at',\n] as const;\n\nconst SELECT_COLUMNS = OUTBOX_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Normalize a SQLite result row into a typed OutboxRow. */\nfunction toOutboxRow(row: Record<string, unknown>): OutboxRow {\n  return {\n    id: row.id as number,\n    table_name: row.table_name as string,\n    row_id: row.row_id as string,\n    operation: row.operation as string,\n    payload: row.payload as string,\n    machine_id: row.machine_id as string,\n    created_at: row.created_at as number,\n    sent_at: (row.sent_at as number) ?? null,\n    retry_count: (row.retry_count as number) ?? 0,\n    last_attempt_at: (row.last_attempt_at as number) ?? null,\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Convenience helper — used by query modules\n// ---------------------------------------------------------------------------\n\n/**\n * Enqueue a row for team sync if sync is enabled.\n *\n * Centralizes the if-enabled / enqueue / serialize pattern that every\n * write-path query module previously duplicated inline.\n */\nexport function syncRow(tableName: string, row: { id: string | number; created_at?: number }): void {\n  if (!isTeamSyncEnabled()) return;\n  enqueueOutbox({\n    table_name: tableName,\n    row_id: String(row.id),\n    payload: JSON.stringify(row),\n    machine_id: getTeamMachineId(),\n    created_at: row.created_at ?? Math.floor(Date.now() / 1000),\n  });\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Enqueue a record into the team outbox for later sync.\n *\n * Inserted with `sent_at = NULL` (pending).\n */\nexport function enqueueOutbox(data: OutboxInsert): OutboxRow {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `INSERT INTO team_outbox (\n       table_name, row_id, operation, payload, machine_id, created_at\n     ) VALUES (?, ?, ?, ?, ?, ?)`,\n  ).run(\n    data.table_name,\n    data.row_id,\n    data.operation ?? 'upsert',\n    data.payload,\n    data.machine_id,\n    data.created_at,\n  );\n\n  const id = Number(info.lastInsertRowid);\n\n  return toOutboxRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM team_outbox WHERE id = ?`).get(id) as Record<string, unknown>,\n  );\n}\n\n/**\n * List pending outbox records (oldest-first).\n *\n * Uses burst sizing: fetches BURST_BATCH_SIZE rows and returns them all.\n * If fewer than BURST_THRESHOLD rows come back, callers get a normal-size\n * batch; if more, the full burst. This avoids a separate COUNT query.\n */\nexport function listPending(limit?: number): OutboxRow[] {\n  const db = getDatabase();\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM team_outbox\n     WHERE sent_at IS NULL AND retry_count < ?\n     ORDER BY created_at ASC\n     LIMIT ?`,\n  ).all(MAX_OUTBOX_RETRIES, limit ?? BURST_BATCH_SIZE) as Record<string, unknown>[];\n\n  return rows.map(toOutboxRow);\n}\n\n/**\n * Mark outbox records as sent by setting sent_at.\n */\nexport function markSent(ids: number[], sentAt: number): void {\n  if (ids.length === 0) return;\n\n  const db = getDatabase();\n  const placeholders = ids.map(() => '?').join(', ');\n\n  db.prepare(\n    `UPDATE team_outbox\n     SET sent_at = ?\n     WHERE id IN (${placeholders})`,\n  ).run(sentAt, ...ids);\n}\n\n/**\n * Reset sent_at to NULL for records that need to be retried.\n *\n * This allows the sync client to re-enqueue specific records for retry.\n */\nexport function markForRetry(ids: number[]): void {\n  if (ids.length === 0) return;\n\n  const db = getDatabase();\n  const placeholders = ids.map(() => '?').join(', ');\n\n  db.prepare(\n    `UPDATE team_outbox\n     SET sent_at = NULL\n     WHERE id IN (${placeholders})`,\n  ).run(...ids);\n}\n\n/**\n * Increment retry_count and set last_attempt_at for failed outbox records.\n *\n * @returns IDs of records that have now reached MAX_OUTBOX_RETRIES (newly dead-lettered).\n */\nexport function incrementRetryCount(ids: number[], attemptAt: number): number[] {\n  if (ids.length === 0) return [];\n\n  const db = getDatabase();\n  const placeholders = ids.map(() => '?').join(', ');\n\n  db.prepare(\n    `UPDATE team_outbox\n     SET retry_count = retry_count + 1, last_attempt_at = ?\n     WHERE id IN (${placeholders})`,\n  ).run(attemptAt, ...ids);\n\n  // Return IDs that just hit the threshold\n  const deadLettered = db.prepare(\n    `SELECT id FROM team_outbox\n     WHERE id IN (${placeholders}) AND retry_count >= ?`,\n  ).all(...ids, MAX_OUTBOX_RETRIES) as Array<{ id: number }>;\n\n  return deadLettered.map((r) => r.id);\n}\n\n/**\n * Reset all dead-lettered records back to pending for retry.\n *\n * @returns the number of records reset.\n */\nexport function retryDeadLettered(): number {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `UPDATE team_outbox\n     SET retry_count = 0, last_attempt_at = NULL\n     WHERE sent_at IS NULL AND retry_count >= ?`,\n  ).run(MAX_OUTBOX_RETRIES);\n\n  return info.changes;\n}\n\n/**\n * Count dead-lettered outbox records (exceeded max retries, never sent).\n */\nexport function countDeadLettered(): number {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT COUNT(*) as count FROM team_outbox WHERE sent_at IS NULL AND retry_count >= ?`,\n  ).get(MAX_OUTBOX_RETRIES) as { count: number };\n\n  return row.count;\n}\n\n/**\n * Prune old outbox records.\n *\n * Removes sent records older than 24 hours.\n *\n * @returns the number of records deleted.\n */\nexport function pruneOld(): number {\n  const db = getDatabase();\n  const cutoff = Math.floor(Date.now() / MS_PER_SECOND) - SENT_PRUNE_AGE_SECONDS;\n\n  const info = db.prepare(\n    `DELETE FROM team_outbox\n     WHERE sent_at IS NOT NULL AND sent_at < ?`,\n  ).run(cutoff);\n\n  return info.changes;\n}\n\n/**\n * Count pending (unsent) outbox records.\n */\nexport function countPending(): number {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT COUNT(*) as count FROM team_outbox WHERE sent_at IS NULL AND retry_count < ?`,\n  ).get(MAX_OUTBOX_RETRIES) as { count: number };\n\n  return row.count;\n}\n\n// ---------------------------------------------------------------------------\n// Source-row sync bookkeeping\n// ---------------------------------------------------------------------------\n\n/** Tables eligible for backfill/sync (must have id, machine_id, synced_at columns). */\nconst BACKFILL_TABLES = [\n  'sessions',\n  'prompt_batches',\n  'spores',\n  'entities',\n  'graph_edges',\n  'resolution_events',\n  'plans',\n  'artifacts',\n  'digest_extracts',\n  'skill_candidates',\n  'skill_records',\n] as const;\n// entity_mentions excluded — no `id` column (composite key entity_id+note_id+note_type)\n// skill_usage excluded — no `synced_at` column (syncs via syncRow on insert)\n\nconst BACKFILL_TABLE_SET = new Set<string>(BACKFILL_TABLES);\n\n/**\n * Mark source rows as synced after successful outbox flush.\n *\n * Groups outbox records by table_name, then sets `synced_at` on the\n * corresponding source rows. This closes the re-enqueue loop: once\n * synced_at is non-NULL, `backfillUnsynced` skips the row even after\n * the outbox entry is pruned.\n */\nexport function markSourceRowsSynced(records: OutboxRow[], syncedAt: number): void {\n  const db = getDatabase();\n\n  // Group row_ids by table\n  const byTable = new Map<string, string[]>();\n  for (const rec of records) {\n    if (!BACKFILL_TABLE_SET.has(rec.table_name)) continue;\n    const ids = byTable.get(rec.table_name) ?? [];\n    ids.push(rec.row_id);\n    byTable.set(rec.table_name, ids);\n  }\n\n  for (const [table, ids] of byTable) {\n    const placeholders = ids.map(() => '?').join(', ');\n    db.prepare(\n      `UPDATE ${table} SET synced_at = ? WHERE id IN (${placeholders}) AND synced_at IS NULL`,\n    ).run(syncedAt, ...ids);\n  }\n}\n\n// ---------------------------------------------------------------------------\n// Backfill\n// ---------------------------------------------------------------------------\n\n/**\n * Enqueue all unsynced records across all synced tables into the outbox.\n *\n * Scans each table for rows where `synced_at IS NULL`, serializes the full\n * row as JSON, and inserts into the outbox. Idempotent — re-running only\n * picks up rows not yet in the outbox (checked via existing outbox entries).\n *\n * @returns the total number of records enqueued.\n */\nexport function backfillUnsynced(machineId: string): number {\n  const db = getDatabase();\n  let total = 0;\n\n  const now = Math.floor(Date.now() / MS_PER_SECOND);\n\n  // Process one table at a time in separate transactions to avoid long locks\n  for (const table of BACKFILL_TABLES) {\n    const rows = db.prepare(\n      `SELECT * FROM ${table}\n       WHERE synced_at IS NULL\n       AND NOT EXISTS (\n         SELECT 1 FROM team_outbox\n         WHERE team_outbox.table_name = ? 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package/dist/chunk-DURKJTVO.js.map

@@ -1 +0,0 @@
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package/dist/chunk-GFR542SM.js.map

@@ -1 +0,0 @@
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package/dist/chunk-NCBLB2C6.js.map

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package/dist/chunk-NKQZ73LL.js.map

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Run /myco:setup-llm to reconfigure for v2.',\n    );\n  }\n\n  // --- v2 → v3 migration ---\n  let v2Migrated = false;\n  if (parsed.version === 2) {\n    // Extract intelligence.embedding to top-level embedding\n    const intel = parsed.intelligence as Record<string, unknown> | undefined;\n    const embeddingConfig = intel?.embedding as Record<string, unknown> | undefined;\n    if (embeddingConfig && !parsed.embedding) {\n      // Map v2 'lm-studio' to v3 'openai-compatible' for embedding provider\n      if (embeddingConfig.provider === 'lm-studio') {\n        embeddingConfig.provider = 'openai-compatible';\n      }\n      parsed.embedding = embeddingConfig;\n    }\n\n    // Keep daemon.port and daemon.log_level, drop grace_period and max_log_size\n    const daemon = parsed.daemon as Record<string, unknown> | undefined;\n    if (daemon) {\n      const { port, log_level } = daemon;\n      parsed.daemon = { port: port ?? null, log_level: log_level ?? 'info' };\n    }\n\n    // Keep capture basics, drop token-related fields; migrate artifact_watch → plan_dirs\n    const capture = parsed.capture as Record<string, unknown> | undefined;\n    if (capture) {\n      const { transcript_paths, artifact_watch, plan_dirs, artifact_extensions, buffer_max_events } = capture;\n      parsed.capture = {\n        transcript_paths,\n        plan_dirs: plan_dirs ?? artifact_watch,\n        artifact_extensions,\n        buffer_max_events,\n      };\n    }\n\n    // Drop removed top-level sections\n    delete parsed.intelligence;\n    delete parsed.context;\n    delete parsed.team;\n    delete parsed.digest;\n    delete parsed.pipeline;\n\n    // Set version to 3\n    parsed.version = 3;\n    v2Migrated = true;\n\n    process.stderr.write('[myco migration] Migrated config from v2 to v3\\n');\n  }\n\n  // Run numbered migrations (for v3+ forward migrations)\n  const migrationsRan = runMigrations(parsed, vaultDir, (msg) => {\n    process.stderr.write(`[myco migration] ${msg}\\n`);\n  });\n\n  // Parse with Zod to fill in defaults for new config sections\n  const config = MycoConfigSchema.parse(parsed);\n\n  // Write back if v2→v3 migration ran, numbered migrations ran, or new defaults were added\n  const needsWrite = v2Migrated\n    || migrationsRan\n    || (parsed.config_version as number ?? 0) < CURRENT_MIGRATION_VERSION\n    || parsed.version !== config.version;\n\n  if (needsWrite) {\n    const fullConfig = JSON.parse(JSON.stringify(config)) as Record<string, unknown>;\n    fs.writeFileSync(configPath, YAML.stringify(fullConfig), 'utf-8');\n  }\n\n  return config;\n}\n\nexport function saveConfig(vaultDir: string, config: MycoConfig): void {\n  // Validate before writing — OAK lesson: validate on write, not just read\n  const validated = MycoConfigSchema.parse(config);\n\n  const configPath = path.join(vaultDir, CONFIG_FILENAME);\n  fs.mkdirSync(vaultDir, { recursive: true });\n  fs.writeFileSync(configPath, YAML.stringify(validated), 'utf-8');\n}\n\nexport function updateConfig(\n  vaultDir: string,\n  fn: (config: MycoConfig) => MycoConfig,\n): MycoConfig {\n  const current = loadConfig(vaultDir);\n  const updated = fn(current);\n  saveConfig(vaultDir, updated);\n  return updated;\n}\n\nexport function updateBackupConfig(\n  vaultDir: string,\n  backup: Partial<BackupConfig>,\n): MycoConfig {\n  return updateConfig(vaultDir, (config) => ({\n    ...config,\n    backup: { ...config.backup, ...backup },\n  }));\n}\n\n/**\n * Extract the set of enabled symbiont names from config.\n * Returns null when the `symbionts` section is absent (pre-existing installs),\n * signalling callers to fall back to their own heuristic.\n */\nexport function getEnabledSymbiontNames(config: MycoConfig): Set<string> | null {\n  if (!config.symbionts) return null;\n  return new Set(\n    Object.entries(config.symbionts)\n      .filter(([, entry]) => entry.enabled)\n      .map(([name]) => name),\n  );\n}\n\nexport function updateTeamConfig(\n  vaultDir: string,\n  team: Partial<TeamConfig>,\n): MycoConfig {\n  return updateConfig(vaultDir, (config) => ({\n    ...config,\n    team: { ...config.team, ...team },\n  }));\n}\n","import { z } from 'zod';\nimport { SCHEDULABLE_POWER_STATES } from '@myco/constants.js';\n\nconst EmbeddingProviderSchema = z.object({\n  provider: z.enum(['ollama', 'openai-compatible', 'openrouter', 'openai']).default('ollama'),\n  model: z.string().default('bge-m3'),\n  base_url: z.string().url().optional(),\n});\n\nconst DaemonSchema = z.object({\n  port: z.number().int().min(1024).max(65535).nullable().default(null),\n  log_level: z.enum(['debug', 'info', 'warn', 'error']).default('info'),\n  log_retention_days: z.number().int().min(1).max(365).default(30),\n  /**\n   * Time without new prompts before an active session is auto-completed (ms).\n   * Intelligence tasks (full-intelligence, skill-survey, etc.) only process\n   * settled sessions, so this threshold directly controls how fresh their\n   * inputs are. Defaults to 1 hour.\n   */\n  stale_session_threshold_ms: z.number().int().min(60_000).default(60 * 60 * 1000),\n});\n\nconst CaptureSchema = z.object({\n  transcript_paths: z.array(z.string()).default([]),\n  plan_dirs: z.array(z.string()).default([]),\n  ignore_plan_dirs_in_git: z.boolean().default(false),\n  artifact_extensions: z.array(z.string()).default(['.md']),\n  buffer_max_events: z.number().int().positive().default(500),\n});\n\n/** Provider config shape used in both task-level and phase-level overrides. */\nconst ProviderOverrideSchema = z.object({\n  type: z.enum(['anthropic', 'ollama', 'lmstudio']),\n  base_url: z.string().optional(),\n  model: z.string().optional(),\n  /** Context window size for local models (Ollama num_ctx, LM Studio context_length). */\n  context_length: z.number().int().positive().optional(),\n});\n\n/** Per-phase overrides within a task — keyed by phase name. */\nconst PhaseOverrideSchema = z.object({\n  provider: ProviderOverrideSchema.optional(),\n  model: z.string().optional(),\n  maxTurns: z.number().int().positive().optional(),\n});\n\n/** Per-task schedule override — partial, merges with YAML defaults. */\nconst ScheduleOverrideSchema = z.object({\n  enabled: z.boolean().optional(),\n  intervalSeconds: z.number().int().positive().optional(),\n  runIn: z.array(z.enum([...SCHEDULABLE_POWER_STATES])).optional(),\n  preCondition: z.enum(['has-unprocessed-batches', 'has-active-skills', 'has-approved-candidates']).optional(),\n}).optional();\n\n/** Per-task config override — stored in myco.yaml under agent.tasks. */\nconst TaskProviderOverrideSchema = z.object({\n  provider: ProviderOverrideSchema.optional(),\n  model: z.string().optional(),\n  maxTurns: z.number().int().positive().optional(),\n  timeoutSeconds: z.number().int().positive().optional(),\n  phases: z.record(z.string(), PhaseOverrideSchema).optional(),\n  schedule: ScheduleOverrideSchema,\n  /** Task-specific params — keys and types vary per task. */\n  params: z.record(z.string(), z.union([z.string(), z.number(), z.boolean()])).optional(),\n});\n\nconst ContextSchema = z.object({\n  /** Which digest tier to inject at session start. */\n  digest_tier: z.number().int().default(5000),\n  /** Enable semantic spore search on each user prompt. */\n  prompt_search: z.boolean().default(true),\n  /** Max spores to inject per prompt (0-10). */\n  prompt_max_spores: z.number().int().min(0).max(10).default(3),\n});\n\nconst AgentSchema = z.object({\n  /** Number of batches between event-driven summary triggers (0 to disable). */\n  summary_batch_interval: z.number().int().min(0).default(5),\n  /** Global toggle for PowerManager-scheduled agent tasks. */\n  scheduled_tasks_enabled: z.boolean().default(true),\n  /** Global toggle for event-driven agent tasks (title-summary). */\n  event_tasks_enabled: z.boolean().default(true),\n  /** Global default provider — applies to all tasks unless overridden per-task. */\n  provider: ProviderOverrideSchema.optional(),\n  /** Global default model — applies to all tasks unless overridden per-task. */\n  model: z.string().optional(),\n  /** Per-task overrides keyed by task name. */\n  tasks: z.record(z.string(), TaskProviderOverrideSchema).optional(),\n});\n\nconst BackupSchema = z.object({\n  /** Override directory for backup files. Supports ~ for home directory. When unset, defaults to .myco/backups. */\n  dir: z.string().optional(),\n});\n\nconst MaintenanceSchema = z.object({\n  /** Automatically run PRAGMA optimize on a schedule. */\n  auto_optimize: z.boolean().default(true),\n  /** How often to run auto-optimize, in hours (1–720). */\n  auto_optimize_interval_hours: z.number().int().min(1).max(720).default(24),\n});\n\nconst TeamSchema = z.object({\n  /** Whether team sync is enabled. */\n  enabled: z.boolean().default(false),\n  /** Cloudflare Worker URL for team sync. */\n  worker_url: z.string().url().optional(),\n  /** Team identifier for sync grouping. */\n  team_id: z.string().optional(),\n  /** Sync interval in minutes. */\n  interval_minutes: z.number().int().min(1).max(1440).default(15),\n});\n\nconst SkillsSchema = z.object({\n  /** Auto-generate candidates above this confidence score. */\n  confidence_threshold: z.number().min(0).max(1).default(0.7),\n  /** Flag unused skills after this many days. */\n  usage_stale_days: z.number().int().positive().default(30),\n});\n\nconst NotificationsSchema = z.object({\n  /** Master switch — disables all notifications when false. */\n  enabled: z.boolean().default(true),\n  /** Allow browser system notifications (Notification API). */\n  system_notifications: z.boolean().default(false),\n  /** Default display mode for new notification types. */\n  default_mode: z.enum(['banner', 'summary']).default('summary'),\n  /** Per-domain settings. Keys are domain names from the registry. */\n  domains: z.record(z.string(), z.object({\n    enabled: z.boolean().default(true),\n    /** Override display mode for this domain. Omit to use global default_mode. */\n    mode: z.enum(['banner', 'summary']).optional(),\n  })).default({}),\n});\n\nconst SymbiontEntrySchema = z.object({\n  enabled: z.boolean().default(true),\n});\n\nexport const MycoConfigSchema = z.preprocess(\n  (raw: unknown) => {\n    if (raw && typeof raw === 'object' && 'curation' in raw && !('agent' in raw)) {\n      const { curation, ...rest } = raw as Record<string, unknown>;\n      return { ...rest, agent: curation };\n    }\n    return raw;\n  },\n  z.object({\n    version: z.literal(3),\n    config_version: z.number().int().nonnegative().default(0),\n    embedding: EmbeddingProviderSchema.default(() => EmbeddingProviderSchema.parse({})),\n    daemon: DaemonSchema.default(() => DaemonSchema.parse({})),\n    capture: CaptureSchema.default(() => CaptureSchema.parse({})),\n    agent: AgentSchema.default(() => AgentSchema.parse({})),\n    context: ContextSchema.default(() => ContextSchema.parse({})),\n    backup: BackupSchema.default(() => BackupSchema.parse({})),\n    maintenance: MaintenanceSchema.default(() => MaintenanceSchema.parse({})),\n    team: TeamSchema.default(() => TeamSchema.parse({})),\n    skills: SkillsSchema.default(() => SkillsSchema.parse({})),\n    notifications: NotificationsSchema.default(() => NotificationsSchema.parse({})),\n    symbionts: z.record(z.string(), SymbiontEntrySchema).optional(),\n  }),\n);\n\nexport type MycoConfig = z.output<typeof MycoConfigSchema>;\nexport type EmbeddingProviderConfig = z.infer<typeof EmbeddingProviderSchema>;\nexport type TaskProviderOverride = z.infer<typeof TaskProviderOverrideSchema>;\nexport type PhaseOverride = z.infer<typeof PhaseOverrideSchema>;\nexport type ScheduleOverride = z.infer<typeof ScheduleOverrideSchema>;\nexport type ContextConfig = z.infer<typeof ContextSchema>;\nexport type BackupConfig = z.infer<typeof BackupSchema>;\nexport type TeamConfig = z.infer<typeof TeamSchema>;\nexport type SkillsConfig = z.infer<typeof SkillsSchema>;\nexport type NotificationsConfig = z.infer<typeof NotificationsSchema>;\nexport type SymbiontEntry = z.infer<typeof SymbiontEntrySchema>;\n","/**\n * Config and vault migrations — run once per version, tracked by config_version.\n *\n * Each migration has a version number, a name, and a function that receives\n * the raw parsed YAML doc and the vault directory. Migrations run in order\n * and are skipped if config_version is already past them.\n *\n * To add a new migration:\n * 1. Add an entry to MIGRATIONS with the next version number\n * 2. Write the migrate function — it receives the mutable doc and vaultDir\n * 3. The framework handles version tracking and writing the config back\n */\n\nimport fs from 'node:fs';\nimport path from 'node:path';\n\nexport interface Migration {\n  version: number;\n  name: string;\n  migrate: (doc: Record<string, unknown>, vaultDir: string) => void;\n}\n\n/** Regex matching both quoted and unquoted YAML: type: memory, type: \"memory\", type: 'memory' */\nconst MEMORY_TYPE_PATTERN = /type:\\s*[\"']?memory[\"']?/g;\n\nexport const MIGRATIONS: Migration[] = [\n  {\n    version: 1,\n    name: 'rename-memories-to-spores',\n    migrate: (doc, vaultDir) => {\n      // Config: rename context.layers.memories → context.layers.spores\n      const context = doc.context as Record<string, unknown> | undefined;\n      const layers = context?.layers as Record<string, unknown> | undefined;\n      if (layers && 'memories' in layers && !('spores' in layers)) {\n        layers.spores = layers.memories;\n        delete layers.memories;\n      }\n\n      // Vault: rename memories/ directory → spores/\n      const memoriesDir = path.join(vaultDir, 'memories');\n      const sporesDir = path.join(vaultDir, 'spores');\n\n      if (!fs.existsSync(memoriesDir)) return;\n\n      if (fs.existsSync(sporesDir)) {\n        // Both exist (interrupted migration) — merge remaining files\n        const moveRemaining = (srcDir: string, destDir: string): void => {\n          for (const entry of fs.readdirSync(srcDir, { withFileTypes: true })) {\n            const srcPath = path.join(srcDir, entry.name);\n            const destPath = path.join(destDir, entry.name);\n            if (entry.isDirectory()) {\n              if (!fs.existsSync(destPath)) fs.mkdirSync(destPath, { recursive: true });\n              moveRemaining(srcPath, destPath);\n            } else if (!fs.existsSync(destPath)) {\n              fs.renameSync(srcPath, destPath);\n            }\n          }\n        };\n        moveRemaining(memoriesDir, sporesDir);\n        fs.rmSync(memoriesDir, { recursive: true, force: true });\n      } else {\n        fs.renameSync(memoriesDir, sporesDir);\n      }\n\n      // Update frontmatter type: memory → type: spore (handles quoted and unquoted)\n      const walkUpdate = (dir: string): void => {\n        for (const entry of fs.readdirSync(dir, { withFileTypes: true })) {\n          const fullPath = path.join(dir, entry.name);\n          if (entry.isDirectory()) { walkUpdate(fullPath); continue; }\n          if (!entry.name.endsWith('.md')) continue;\n          const content = fs.readFileSync(fullPath, 'utf-8');\n          MEMORY_TYPE_PATTERN.lastIndex = 0;\n          if (MEMORY_TYPE_PATTERN.test(content)) {\n            MEMORY_TYPE_PATTERN.lastIndex = 0;\n            fs.writeFileSync(fullPath, content.replace(MEMORY_TYPE_PATTERN, 'type: spore'));\n          }\n        }\n      };\n      walkUpdate(sporesDir);\n\n      // Legacy: update wikilink references in Markdown files (pre-SQLite migration): [[memories/...]] → [[spores/...]]\n      const walkLinks = (dir: string): void => {\n        for (const entry of fs.readdirSync(dir, { withFileTypes: true })) {\n          const fullPath = path.join(dir, entry.name);\n          if (entry.isDirectory()) { walkLinks(fullPath); continue; }\n          if (!entry.name.endsWith('.md')) continue;\n          const content = fs.readFileSync(fullPath, 'utf-8');\n          if (content.includes('memories/')) {\n            fs.writeFileSync(fullPath, content.replace(/memories\\//g, 'spores/'));\n          }\n        }\n      };\n      walkLinks(vaultDir);\n    },\n  },\n  {\n    version: 2,\n    name: 'consolidation-boolean-to-object',\n    migrate: (doc) => {\n      const digest = doc.digest as Record<string, unknown> | undefined;\n      if (!digest) return;\n\n      const consolidation = digest.consolidation;\n      if (typeof consolidation === 'boolean') {\n        digest.consolidation = { enabled: consolidation, max_tokens: 2048 };\n      }\n    },\n  },\n  {\n    version: 3,\n    name: 'schedule-to-task-level',\n    migrate(doc: Record<string, unknown>, _vaultDir: string): void {\n      const agent = (doc.agent ?? {}) as Record<string, unknown>;\n      const skills = (doc.skills ?? {}) as Record<string, unknown>;\n      const tasks = ((agent.tasks ?? {}) as Record<string, Record<string, unknown>>);\n\n      /** Default interval for full-intelligence task (5 minutes). */\n      const DEFAULT_INTELLIGENCE_INTERVAL_SECONDS = 300;\n\n      const VALID_SCHEDULE_STATES = ['active', 'idle', 'sleep'] as const;\n\n      // Migrate agent.auto_run + interval_seconds → full-intelligence schedule\n      if ('auto_run' in agent || 'interval_seconds' in agent) {\n        const fiTask = tasks['full-intelligence'] ?? {};\n        fiTask.schedule = {\n          enabled: agent.auto_run ?? true,\n          intervalSeconds: agent.interval_seconds ?? DEFAULT_INTELLIGENCE_INTERVAL_SECONDS,\n        };\n        tasks['full-intelligence'] = fiTask;\n        delete agent.auto_run;\n        delete agent.interval_seconds;\n      }\n\n      // Migrate skills.auto_survey → skill-survey schedule\n      if ('auto_survey' in skills) {\n        const ssTask = tasks['skill-survey'] ?? {};\n        ssTask.schedule = {\n          enabled: skills.auto_survey ?? false,\n        };\n        tasks['skill-survey'] = ssTask;\n        delete skills.auto_survey;\n      }\n\n      // Migrate skills.auto_evolve + evolve_cadence → skill-evolve schedule\n      if ('auto_evolve' in skills || 'evolve_cadence' in skills) {\n        const seTask = tasks['skill-evolve'] ?? {};\n        const schedule: Record<string, unknown> = {\n          enabled: skills.auto_evolve ?? false,\n        };\n        if ('evolve_cadence' in skills) {\n          const cadence = String(skills.evolve_cadence);\n          schedule.runIn = VALID_SCHEDULE_STATES.includes(cadence as typeof VALID_SCHEDULE_STATES[number])\n            ? [cadence]\n            : ['idle']; // fallback to safe default\n        }\n        seTask.schedule = schedule;\n        tasks['skill-evolve'] = seTask;\n        delete skills.auto_evolve;\n        delete skills.evolve_cadence;\n      }\n\n      // Write back tasks if any were created\n      if (Object.keys(tasks).length > 0) {\n        agent.tasks = tasks;\n      }\n      doc.agent = agent;\n      doc.skills = skills;\n    },\n  },\n  {\n    version: 4,\n    name: 'rename-cloud-provider-to-anthropic',\n    migrate(doc: Record<string, unknown>, _vaultDir: string): void {\n      // Rename `provider.type: cloud` -> `provider.type: anthropic` everywhere\n      // it appears in the agent config: global default, per-task, per-phase.\n      const renameProvider = (provider: unknown): void => {\n        if (\n          provider &&\n          typeof provider === 'object' &&\n          (provider as Record<string, unknown>).type === 'cloud'\n        ) {\n          (provider as Record<string, unknown>).type = 'anthropic';\n        }\n      };\n\n      const agent = doc.agent as Record<string, unknown> | undefined;\n      if (!agent) return;\n\n      // Global default provider\n      renameProvider(agent.provider);\n\n      // Per-task overrides\n      const tasks = agent.tasks as Record<string, Record<string, unknown>> | undefined;\n      if (tasks) {\n        for (const taskConfig of Object.values(tasks)) {\n          renameProvider(taskConfig.provider);\n\n          // Per-phase overrides within a task\n          const phases = taskConfig.phases as Record<string, Record<string, unknown>> | undefined;\n          if (phases) {\n            for (const phaseConfig of Object.values(phases)) {\n              renameProvider(phaseConfig.provider);\n            }\n          }\n        }\n      }\n    },\n  },\n];\n\n/** Current migration version — the highest version in MIGRATIONS. */\nexport const CURRENT_MIGRATION_VERSION = MIGRATIONS[MIGRATIONS.length - 1]?.version ?? 0;\n\n/**\n * Run all pending migrations on the raw config doc.\n * Returns true if any migrations ran (caller should reindex).\n */\nexport function runMigrations(\n  doc: Record<string, unknown>,\n  vaultDir: string,\n  log?: (message: string) => void,\n): boolean {\n  const currentVersion = (doc.config_version as number) ?? 0;\n  let ran = false;\n\n  for (const migration of MIGRATIONS) {\n    if (migration.version <= currentVersion) continue;\n\n    migration.migrate(doc, vaultDir);\n    doc.config_version = migration.version;\n    ran = true;\n  }\n\n  if (ran) {\n    const from = currentVersion;\n    const to = (doc.config_version as number) ?? 0;\n    log?.(`Migrated config from v${from} to v${to}`);\n  }\n\n  return 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