@goondocks/myco 0.19.5 → 0.20.0

package/dist/chunk-AULBWINA.js

@@ -1,227 +0,0 @@
-import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
-import {
-  getDatabase
-} from "./chunk-MYX5NCRH.js";
-import {
-  DEFAULT_MACHINE_ID
-} from "./chunk-I54KLC6H.js";
-
-// src/daemon/team-context.ts
-var teamSyncEnabled = false;
-var teamMachineId = DEFAULT_MACHINE_ID;
-function initTeamContext(enabled, machineId) {
-  teamSyncEnabled = enabled;
-  teamMachineId = machineId;
-}
-function isTeamSyncEnabled() {
-  return teamSyncEnabled;
-}
-function getTeamMachineId() {
-  return teamMachineId;
-}
-
-// src/db/queries/team-outbox.ts
-var BURST_BATCH_SIZE = 200;
-var SENT_PRUNE_AGE_SECONDS = 86400;
-var MAX_OUTBOX_RETRIES = 10;
-var MS_PER_SECOND = 1e3;
-var OUTBOX_COLUMNS = [
-  "id",
-  "table_name",
-  "row_id",
-  "operation",
-  "payload",
-  "machine_id",
-  "created_at",
-  "sent_at",
-  "retry_count",
-  "last_attempt_at"
-];
-var SELECT_COLUMNS = OUTBOX_COLUMNS.join(", ");
-function toOutboxRow(row) {
-  return {
-    id: row.id,
-    table_name: row.table_name,
-    row_id: row.row_id,
-    operation: row.operation,
-    payload: row.payload,
-    machine_id: row.machine_id,
-    created_at: row.created_at,
-    sent_at: row.sent_at ?? null,
-    retry_count: row.retry_count ?? 0,
-    last_attempt_at: row.last_attempt_at ?? null
-  };
-}
-function syncRow(tableName, row) {
-  if (!isTeamSyncEnabled()) return;
-  enqueueOutbox({
-    table_name: tableName,
-    row_id: String(row.id),
-    payload: JSON.stringify(row),
-    machine_id: getTeamMachineId(),
-    created_at: row.created_at ?? Math.floor(Date.now() / 1e3)
-  });
-}
-function enqueueOutbox(data) {
-  const db = getDatabase();
-  const info = db.prepare(
-    `INSERT INTO team_outbox (
-       table_name, row_id, operation, payload, machine_id, created_at
-     ) VALUES (?, ?, ?, ?, ?, ?)`
-  ).run(
-    data.table_name,
-    data.row_id,
-    data.operation ?? "upsert",
-    data.payload,
-    data.machine_id,
-    data.created_at
-  );
-  const id = Number(info.lastInsertRowid);
-  return toOutboxRow(
-    db.prepare(`SELECT ${SELECT_COLUMNS} FROM team_outbox WHERE id = ?`).get(id)
-  );
-}
-function listPending(limit) {
-  const db = getDatabase();
-  const rows = db.prepare(
-    `SELECT ${SELECT_COLUMNS}
-     FROM team_outbox
-     WHERE sent_at IS NULL AND retry_count < ?
-     ORDER BY created_at ASC
-     LIMIT ?`
-  ).all(MAX_OUTBOX_RETRIES, limit ?? BURST_BATCH_SIZE);
-  return rows.map(toOutboxRow);
-}
-function markSent(ids, sentAt) {
-  if (ids.length === 0) return;
-  const db = getDatabase();
-  const placeholders = ids.map(() => "?").join(", ");
-  db.prepare(
-    `UPDATE team_outbox
-     SET sent_at = ?
-     WHERE id IN (${placeholders})`
-  ).run(sentAt, ...ids);
-}
-function incrementRetryCount(ids, attemptAt) {
-  if (ids.length === 0) return [];
-  const db = getDatabase();
-  const placeholders = ids.map(() => "?").join(", ");
-  db.prepare(
-    `UPDATE team_outbox
-     SET retry_count = retry_count + 1, last_attempt_at = ?
-     WHERE id IN (${placeholders})`
-  ).run(attemptAt, ...ids);
-  const deadLettered = db.prepare(
-    `SELECT id FROM team_outbox
-     WHERE id IN (${placeholders}) AND retry_count >= ?`
-  ).all(...ids, MAX_OUTBOX_RETRIES);
-  return deadLettered.map((r) => r.id);
-}
-function retryDeadLettered() {
-  const db = getDatabase();
-  const info = db.prepare(
-    `UPDATE team_outbox
-     SET retry_count = 0, last_attempt_at = NULL
-     WHERE sent_at IS NULL AND retry_count >= ?`
-  ).run(MAX_OUTBOX_RETRIES);
-  return info.changes;
-}
-function countDeadLettered() {
-  const db = getDatabase();
-  const row = db.prepare(
-    `SELECT COUNT(*) as count FROM team_outbox WHERE sent_at IS NULL AND retry_count >= ?`
-  ).get(MAX_OUTBOX_RETRIES);
-  return row.count;
-}
-function pruneOld() {
-  const db = getDatabase();
-  const cutoff = Math.floor(Date.now() / MS_PER_SECOND) - SENT_PRUNE_AGE_SECONDS;
-  const info = db.prepare(
-    `DELETE FROM team_outbox
-     WHERE sent_at IS NOT NULL AND sent_at < ?`
-  ).run(cutoff);
-  return info.changes;
-}
-function countPending() {
-  const db = getDatabase();
-  const row = db.prepare(
-    `SELECT COUNT(*) as count FROM team_outbox WHERE sent_at IS NULL AND retry_count < ?`
-  ).get(MAX_OUTBOX_RETRIES);
-  return row.count;
-}
-var BACKFILL_TABLES = [
-  "sessions",
-  "prompt_batches",
-  "spores",
-  "entities",
-  "graph_edges",
-  "resolution_events",
-  "plans",
-  "artifacts",
-  "digest_extracts",
-  "skill_candidates",
-  "skill_records"
-];
-var BACKFILL_TABLE_SET = new Set(BACKFILL_TABLES);
-function markSourceRowsSynced(records, syncedAt) {
-  const db = getDatabase();
-  const byTable = /* @__PURE__ */ new Map();
-  for (const rec of records) {
-    if (!BACKFILL_TABLE_SET.has(rec.table_name)) continue;
-    const ids = byTable.get(rec.table_name) ?? [];
-    ids.push(rec.row_id);
-    byTable.set(rec.table_name, ids);
-  }
-  for (const [table, ids] of byTable) {
-    const placeholders = ids.map(() => "?").join(", ");
-    db.prepare(
-      `UPDATE ${table} SET synced_at = ? WHERE id IN (${placeholders}) AND synced_at IS NULL`
-    ).run(syncedAt, ...ids);
-  }
-}
-function backfillUnsynced(machineId) {
-  const db = getDatabase();
-  let total = 0;
-  const now = Math.floor(Date.now() / MS_PER_SECOND);
-  for (const table of BACKFILL_TABLES) {
-    const rows = db.prepare(
-      `SELECT * FROM ${table}
-       WHERE synced_at IS NULL
-       AND NOT EXISTS (
-         SELECT 1 FROM team_outbox
-         WHERE team_outbox.table_name = ? AND team_outbox.row_id = CAST(${table}.id AS TEXT)
-       )`
-    ).all(table);
-    if (rows.length === 0) continue;
-    const insertBatch = db.transaction((batchRows) => {
-      const stmt = db.prepare(
-        `INSERT INTO team_outbox (table_name, row_id, operation, payload, machine_id, created_at)
-         VALUES (?, ?, 'upsert', ?, ?, ?)`
-      );
-      for (const row of batchRows) {
-        stmt.run(table, String(row.id), JSON.stringify(row), machineId, now);
-      }
-    });
-    insertBatch(rows);
-    total += rows.length;
-  }
-  return total;
-}
-
-export {
-  initTeamContext,
-  isTeamSyncEnabled,
-  getTeamMachineId,
-  syncRow,
-  enqueueOutbox,
-  listPending,
-  markSent,
-  incrementRetryCount,
-  retryDeadLettered,
-  countDeadLettered,
-  pruneOld,
-  countPending,
-  markSourceRowsSynced,
-  backfillUnsynced
-};
-//# sourceMappingURL=chunk-AULBWINA.js.map

package/dist/chunk-AULBWINA.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/daemon/team-context.ts","../src/db/queries/team-outbox.ts"],"sourcesContent":["/**\n * Module-level state for team sync.\n *\n * Initialized once by the daemon on startup. Query modules import\n * `isTeamSyncEnabled()` and `getTeamMachineId()` to decide whether\n * to enqueue outbox records on write.\n */\n\nimport { SYNC_PROTOCOL_VERSION, DEFAULT_MACHINE_ID } from '@myco/constants.js';\n\n// ---------------------------------------------------------------------------\n// Module state\n// ---------------------------------------------------------------------------\n\nlet teamSyncEnabled = false;\nlet teamMachineId = DEFAULT_MACHINE_ID;\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Initialize team context. Called once on daemon startup.\n */\nexport function initTeamContext(enabled: boolean, machineId: string): void {\n  teamSyncEnabled = enabled;\n  teamMachineId = machineId;\n}\n\n/**\n * Whether team sync is currently enabled.\n *\n * Query modules check this before enqueuing outbox records.\n */\nexport function isTeamSyncEnabled(): boolean {\n  return teamSyncEnabled;\n}\n\n/**\n * The machine ID for this instance.\n */\nexport function getTeamMachineId(): string {\n  return teamMachineId;\n}\n\n/**\n * The sync protocol version in use.\n */\nexport function getTeamSyncProtocolVersion(): number {\n  return SYNC_PROTOCOL_VERSION;\n}\n\n/**\n * Reset team context (for testing).\n */\nexport function resetTeamContext(): void {\n  teamSyncEnabled = false;\n  teamMachineId = DEFAULT_MACHINE_ID;\n}\n","/**\n * Team outbox CRUD query helpers.\n *\n * The outbox pattern: write paths enqueue records here when team sync is enabled.\n * The sync client flushes pending records in batches to the Cloudflare Worker.\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport { getDatabase } from '@myco/db/client.js';\nimport { isTeamSyncEnabled, getTeamMachineId } from '@myco/daemon/team-context.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Max records returned per listPending call. */\nconst BURST_BATCH_SIZE = 200;\n\n/** Age in seconds after which sent records are pruned (24 hours). */\nconst SENT_PRUNE_AGE_SECONDS = 86_400;\n\n/** Max retry attempts before a record is dead-lettered. */\nexport const MAX_OUTBOX_RETRIES = 10;\n\n/** Milliseconds-per-second multiplier for epoch math. */\nconst MS_PER_SECOND = 1000;\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Fields required when enqueuing an outbox record. */\nexport interface OutboxInsert {\n  table_name: string;\n  row_id: string;\n  operation?: string;\n  payload: string;\n  machine_id: string;\n  created_at: number;\n}\n\n/** Row shape returned from outbox queries. */\nexport interface OutboxRow {\n  id: number;\n  table_name: string;\n  row_id: string;\n  operation: string;\n  payload: string;\n  machine_id: string;\n  created_at: number;\n  sent_at: number | null;\n  retry_count: number;\n  last_attempt_at: number | null;\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst OUTBOX_COLUMNS = [\n  'id',\n  'table_name',\n  'row_id',\n  'operation',\n  'payload',\n  'machine_id',\n  'created_at',\n  'sent_at',\n  'retry_count',\n  'last_attempt_at',\n] as const;\n\nconst SELECT_COLUMNS = OUTBOX_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Normalize a SQLite result row into a typed OutboxRow. */\nfunction toOutboxRow(row: Record<string, unknown>): OutboxRow {\n  return {\n    id: row.id as number,\n    table_name: row.table_name as string,\n    row_id: row.row_id as string,\n    operation: row.operation as string,\n    payload: row.payload as string,\n    machine_id: row.machine_id as string,\n    created_at: row.created_at as number,\n    sent_at: (row.sent_at as number) ?? null,\n    retry_count: (row.retry_count as number) ?? 0,\n    last_attempt_at: (row.last_attempt_at as number) ?? null,\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Convenience helper — used by query modules\n// ---------------------------------------------------------------------------\n\n/**\n * Enqueue a row for team sync if sync is enabled.\n *\n * Centralizes the if-enabled / enqueue / serialize pattern that every\n * write-path query module previously duplicated inline.\n */\nexport function syncRow(tableName: string, row: { id: string | number; created_at?: number }): void {\n  if (!isTeamSyncEnabled()) return;\n  enqueueOutbox({\n    table_name: tableName,\n    row_id: String(row.id),\n    payload: JSON.stringify(row),\n    machine_id: getTeamMachineId(),\n    created_at: row.created_at ?? Math.floor(Date.now() / 1000),\n  });\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Enqueue a record into the team outbox for later sync.\n *\n * Inserted with `sent_at = NULL` (pending).\n */\nexport function enqueueOutbox(data: OutboxInsert): OutboxRow {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `INSERT INTO team_outbox (\n       table_name, row_id, operation, payload, machine_id, created_at\n     ) VALUES (?, ?, ?, ?, ?, ?)`,\n  ).run(\n    data.table_name,\n    data.row_id,\n    data.operation ?? 'upsert',\n    data.payload,\n    data.machine_id,\n    data.created_at,\n  );\n\n  const id = Number(info.lastInsertRowid);\n\n  return toOutboxRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM team_outbox WHERE id = ?`).get(id) as Record<string, unknown>,\n  );\n}\n\n/**\n * List pending outbox records (oldest-first).\n *\n * Uses burst sizing: fetches BURST_BATCH_SIZE rows and returns them all.\n * If fewer than BURST_THRESHOLD rows come back, callers get a normal-size\n * batch; if more, the full burst. This avoids a separate COUNT query.\n */\nexport function listPending(limit?: number): OutboxRow[] {\n  const db = getDatabase();\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM team_outbox\n     WHERE sent_at IS NULL AND retry_count < ?\n     ORDER BY created_at ASC\n     LIMIT ?`,\n  ).all(MAX_OUTBOX_RETRIES, limit ?? BURST_BATCH_SIZE) as Record<string, unknown>[];\n\n  return rows.map(toOutboxRow);\n}\n\n/**\n * Mark outbox records as sent by setting sent_at.\n */\nexport function markSent(ids: number[], sentAt: number): void {\n  if (ids.length === 0) return;\n\n  const db = getDatabase();\n  const placeholders = ids.map(() => '?').join(', ');\n\n  db.prepare(\n    `UPDATE team_outbox\n     SET sent_at = ?\n     WHERE id IN (${placeholders})`,\n  ).run(sentAt, ...ids);\n}\n\n/**\n * Reset sent_at to NULL for records that need to be retried.\n *\n * This allows the sync client to re-enqueue specific records for retry.\n */\nexport function markForRetry(ids: number[]): void {\n  if (ids.length === 0) return;\n\n  const db = getDatabase();\n  const placeholders = ids.map(() => '?').join(', ');\n\n  db.prepare(\n    `UPDATE team_outbox\n     SET sent_at = NULL\n     WHERE id IN (${placeholders})`,\n  ).run(...ids);\n}\n\n/**\n * Increment retry_count and set last_attempt_at for failed outbox records.\n *\n * @returns IDs of records that have now reached MAX_OUTBOX_RETRIES (newly dead-lettered).\n */\nexport function incrementRetryCount(ids: number[], attemptAt: number): number[] {\n  if (ids.length === 0) return [];\n\n  const db = getDatabase();\n  const placeholders = ids.map(() => '?').join(', ');\n\n  db.prepare(\n    `UPDATE team_outbox\n     SET retry_count = retry_count + 1, last_attempt_at = ?\n     WHERE id IN (${placeholders})`,\n  ).run(attemptAt, ...ids);\n\n  // Return IDs that just hit the threshold\n  const deadLettered = db.prepare(\n    `SELECT id FROM team_outbox\n     WHERE id IN (${placeholders}) AND retry_count >= ?`,\n  ).all(...ids, MAX_OUTBOX_RETRIES) as Array<{ id: number }>;\n\n  return deadLettered.map((r) => r.id);\n}\n\n/**\n * Reset all dead-lettered records back to pending for retry.\n *\n * @returns the number of records reset.\n */\nexport function retryDeadLettered(): number {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `UPDATE team_outbox\n     SET retry_count = 0, last_attempt_at = NULL\n     WHERE sent_at IS NULL AND retry_count >= ?`,\n  ).run(MAX_OUTBOX_RETRIES);\n\n  return info.changes;\n}\n\n/**\n * Count dead-lettered outbox records (exceeded max retries, never sent).\n */\nexport function countDeadLettered(): number {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT COUNT(*) as count FROM team_outbox WHERE sent_at IS NULL AND retry_count >= ?`,\n  ).get(MAX_OUTBOX_RETRIES) as { count: number };\n\n  return row.count;\n}\n\n/**\n * Prune old outbox records.\n *\n * Removes sent records older than 24 hours.\n *\n * @returns the number of records deleted.\n */\nexport function pruneOld(): number {\n  const db = getDatabase();\n  const cutoff = Math.floor(Date.now() / MS_PER_SECOND) - SENT_PRUNE_AGE_SECONDS;\n\n  const info = db.prepare(\n    `DELETE FROM team_outbox\n     WHERE sent_at IS NOT NULL AND sent_at < ?`,\n  ).run(cutoff);\n\n  return info.changes;\n}\n\n/**\n * Count pending (unsent) outbox records.\n */\nexport function countPending(): number {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT COUNT(*) as count FROM team_outbox WHERE sent_at IS NULL AND retry_count < ?`,\n  ).get(MAX_OUTBOX_RETRIES) as { count: number };\n\n  return row.count;\n}\n\n// ---------------------------------------------------------------------------\n// Source-row sync bookkeeping\n// ---------------------------------------------------------------------------\n\n/** Tables eligible for backfill/sync (must have id, machine_id, synced_at columns). */\nconst BACKFILL_TABLES = [\n  'sessions',\n  'prompt_batches',\n  'spores',\n  'entities',\n  'graph_edges',\n  'resolution_events',\n  'plans',\n  'artifacts',\n  'digest_extracts',\n  'skill_candidates',\n  'skill_records',\n] as const;\n// entity_mentions excluded — no `id` column (composite key entity_id+note_id+note_type)\n// skill_usage excluded — no `synced_at` column (syncs via syncRow on insert)\n\nconst BACKFILL_TABLE_SET = new Set<string>(BACKFILL_TABLES);\n\n/**\n * Mark source rows as synced after successful outbox flush.\n *\n * Groups outbox records by table_name, then sets `synced_at` on the\n * corresponding source rows. This closes the re-enqueue loop: once\n * synced_at is non-NULL, `backfillUnsynced` skips the row even after\n * the outbox entry is pruned.\n */\nexport function markSourceRowsSynced(records: OutboxRow[], syncedAt: number): void {\n  const db = getDatabase();\n\n  // Group row_ids by table\n  const byTable = new Map<string, string[]>();\n  for (const rec of records) {\n    if (!BACKFILL_TABLE_SET.has(rec.table_name)) continue;\n    const ids = byTable.get(rec.table_name) ?? [];\n    ids.push(rec.row_id);\n    byTable.set(rec.table_name, ids);\n  }\n\n  for (const [table, ids] of byTable) {\n    const placeholders = ids.map(() => '?').join(', ');\n    db.prepare(\n      `UPDATE ${table} SET synced_at = ? WHERE id IN (${placeholders}) AND synced_at IS NULL`,\n    ).run(syncedAt, ...ids);\n  }\n}\n\n// ---------------------------------------------------------------------------\n// Backfill\n// ---------------------------------------------------------------------------\n\n/**\n * Enqueue all unsynced records across all synced tables into the outbox.\n *\n * Scans each table for rows where `synced_at IS NULL`, serializes the full\n * row as JSON, and inserts into the outbox. Idempotent — re-running only\n * picks up rows not yet in the outbox (checked via existing outbox entries).\n *\n * @returns the total number of records enqueued.\n */\nexport function backfillUnsynced(machineId: string): number {\n  const db = getDatabase();\n  let total = 0;\n\n  const now = Math.floor(Date.now() / MS_PER_SECOND);\n\n  // Process one table at a time in separate transactions to avoid long locks\n  for (const table of BACKFILL_TABLES) {\n    const rows = db.prepare(\n      `SELECT * FROM ${table}\n       WHERE synced_at IS NULL\n       AND NOT EXISTS (\n         SELECT 1 FROM team_outbox\n         WHERE team_outbox.table_name = ? 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package/dist/chunk-DURKJTVO.js.map

@@ -1 +0,0 @@
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package/dist/chunk-GFR542SM.js.map

@@ -1 +0,0 @@
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package/dist/chunk-Q6OEZM3S.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/db/queries/sessions.ts"],"sourcesContent":["/**\n * Session CRUD query helpers.\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport { getDatabase } from '@myco/db/client.js';\nimport { getTeamMachineId } from '@myco/daemon/team-context.js';\nimport { syncRow } from '@myco/db/queries/team-outbox.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Default number of sessions returned by listSessions when no limit given. */\nconst DEFAULT_LIST_LIMIT = 100;\n\n/** Session status value when a session is closed normally. */\nconst STATUS_COMPLETED = 'completed';\n\n/** Default session status for new sessions. */\nconst DEFAULT_STATUS = 'active';\n\n/** Default prompt count for new sessions. */\nconst DEFAULT_PROMPT_COUNT = 0;\n\n/** Default tool count for new sessions. */\nconst DEFAULT_TOOL_COUNT = 0;\n\n/** Default processed flag for new sessions. */\nconst DEFAULT_PROCESSED = 0;\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Fields required (or optional) when inserting/upserting a session. */\nexport interface SessionInsert {\n  id: string;\n  agent: string;\n  started_at: number;\n  created_at: number;\n  user?: string | null;\n  project_root?: string | null;\n  branch?: string | null;\n  ended_at?: number | null;\n  status?: string;\n  prompt_count?: number;\n  tool_count?: number;\n  title?: string | null;\n  summary?: string | null;\n  transcript_path?: string | null;\n  parent_session_id?: string | null;\n  parent_session_reason?: string | null;\n  processed?: number;\n  content_hash?: string | null;\n  machine_id?: string;\n}\n\n/** Row shape returned from session queries (all columns). */\nexport interface SessionRow {\n  id: string;\n  agent: string;\n  user: string | null;\n  project_root: string | null;\n  branch: string | null;\n  started_at: number;\n  ended_at: number | null;\n  status: string;\n  prompt_count: number;\n  tool_count: number;\n  title: string | null;\n  summary: string | null;\n  transcript_path: string | null;\n  parent_session_id: string | null;\n  parent_session_reason: string | null;\n  processed: number;\n  content_hash: string | null;\n  embedded: number;\n  created_at: number;\n  machine_id: string;\n  synced_at: number | null;\n}\n\n/** Updatable fields for `updateSession`. */\nexport interface SessionUpdate {\n  agent?: string;\n  user?: string | null;\n  project_root?: string | null;\n  branch?: string | null;\n  ended_at?: number | null;\n  status?: string;\n  prompt_count?: number;\n  tool_count?: number;\n  title?: string | null;\n  summary?: string | null;\n  transcript_path?: string | null;\n  parent_session_id?: string | null;\n  parent_session_reason?: string | null;\n  processed?: number;\n  content_hash?: string | null;\n}\n\n/** Filter options for `listSessions`. */\nexport interface ListSessionsOptions {\n  limit?: number;\n  offset?: number;\n  status?: string;\n  agent?: string;\n  search?: string;\n  /** Only return sessions created after this epoch-seconds timestamp. */\n  since?: number;\n  /**\n   * When explicitly `false` and no `status` filter is set, exclude sessions\n   * still in `status = 'active'` — intelligence-task reads opt in to this.\n   * Defaults permissive so UI listings keep showing in-flight sessions.\n   */\n  includeActive?: boolean;\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst SESSION_COLUMNS = [\n  'id',\n  'agent',\n  '\"user\"',\n  'project_root',\n  'branch',\n  'started_at',\n  'ended_at',\n  'status',\n  'prompt_count',\n  'tool_count',\n  'title',\n  'summary',\n  'transcript_path',\n  'parent_session_id',\n  'parent_session_reason',\n  'processed',\n  'content_hash',\n  'embedded',\n  'created_at',\n  'machine_id',\n  'synced_at',\n] as const;\n\nconst SELECT_COLUMNS = SESSION_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/**\n * Normalize a SQLite result row into a typed SessionRow.\n *\n * The quoted \"user\" column comes back as `user` in the result object.\n */\nfunction toSessionRow(row: Record<string, unknown>): SessionRow {\n  return {\n    id: row.id as string,\n    agent: row.agent as string,\n    user: (row.user as string) ?? null,\n    project_root: (row.project_root as string) ?? null,\n    branch: (row.branch as string) ?? null,\n    started_at: row.started_at as number,\n    ended_at: (row.ended_at as number) ?? null,\n    status: row.status as string,\n    prompt_count: row.prompt_count as number,\n    tool_count: row.tool_count as number,\n    title: (row.title as string) ?? null,\n    summary: (row.summary as string) ?? null,\n    transcript_path: (row.transcript_path as string) ?? null,\n    parent_session_id: (row.parent_session_id as string) ?? null,\n    parent_session_reason: (row.parent_session_reason as string) ?? null,\n    processed: row.processed as number,\n    content_hash: (row.content_hash as string) ?? null,\n    embedded: (row.embedded as number) ?? 0,\n    created_at: row.created_at as number,\n    machine_id: (row.machine_id as string) ?? 'local',\n    synced_at: (row.synced_at as number) ?? null,\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Insert a session or update it if the id already exists.\n *\n * On conflict the row is updated with the values from `data`, preserving\n * any columns not supplied via COALESCE with EXCLUDED values.\n */\nexport function upsertSession(data: SessionInsert): SessionRow {\n  const db = getDatabase();\n\n  db.prepare(\n    `INSERT INTO sessions (\n       id, agent, \"user\", project_root, branch,\n       started_at, ended_at, status, prompt_count, tool_count,\n       title, summary, transcript_path,\n       parent_session_id, parent_session_reason,\n       processed, content_hash, created_at, machine_id\n     ) VALUES (\n       ?, ?, ?, ?, ?,\n       ?, ?, ?, ?, ?,\n       ?, ?, ?,\n       ?, ?,\n       ?, ?, ?, ?\n     )\n     ON CONFLICT (id) DO UPDATE SET\n       agent                 = EXCLUDED.agent,\n       \"user\"                = EXCLUDED.\"user\",\n       project_root          = EXCLUDED.project_root,\n       branch                = EXCLUDED.branch,\n       started_at            = EXCLUDED.started_at,\n       ended_at              = COALESCE(EXCLUDED.ended_at, sessions.ended_at),\n       status                = COALESCE(EXCLUDED.status, sessions.status),\n       prompt_count          = CASE WHEN ? THEN EXCLUDED.prompt_count ELSE sessions.prompt_count END,\n       tool_count            = CASE WHEN ? THEN EXCLUDED.tool_count ELSE sessions.tool_count END,\n       title                 = COALESCE(EXCLUDED.title, sessions.title),\n       summary               = COALESCE(EXCLUDED.summary, sessions.summary),\n       transcript_path       = COALESCE(EXCLUDED.transcript_path, sessions.transcript_path),\n       parent_session_id     = EXCLUDED.parent_session_id,\n       parent_session_reason = EXCLUDED.parent_session_reason,\n       processed             = COALESCE(EXCLUDED.processed, sessions.processed),\n       content_hash          = EXCLUDED.content_hash`,\n  ).run(\n    data.id,\n    data.agent,\n    data.user ?? null,\n    data.project_root ?? null,\n    data.branch ?? null,\n    data.started_at,\n    data.ended_at ?? null,\n    data.status ?? DEFAULT_STATUS,\n    data.prompt_count ?? DEFAULT_PROMPT_COUNT,\n    data.tool_count ?? DEFAULT_TOOL_COUNT,\n    data.title ?? null,\n    data.summary ?? null,\n    data.transcript_path ?? null,\n    data.parent_session_id ?? null,\n    data.parent_session_reason ?? null,\n    data.processed ?? DEFAULT_PROCESSED,\n    data.content_hash ?? null,\n    data.created_at,\n    data.machine_id ?? getTeamMachineId(),\n    data.prompt_count !== undefined ? 1 : 0,\n    data.tool_count !== undefined ? 1 : 0,\n  );\n\n  const row = toSessionRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM sessions WHERE id = ?`).get(data.id) as Record<string, unknown>,\n  );\n\n  syncRow('sessions', row);\n\n  return row;\n}\n\n/**\n * Retrieve a single session by id.\n *\n * @returns the session row, or null if not found.\n */\nexport function getSession(id: string): SessionRow | null {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT ${SELECT_COLUMNS} FROM sessions WHERE id = ?`,\n  ).get(id) as Record<string, unknown> | undefined;\n\n  if (!row) return null;\n  return toSessionRow(row);\n}\n\n/** Build WHERE clause and bound params from session filter options. */\nfunction buildSessionsWhere(\n  options: Omit<ListSessionsOptions, 'limit' | 'offset'>,\n): { where: string; params: unknown[] } {\n  const conditions: string[] = [];\n  const params: unknown[] = [];\n\n  if (options.status !== undefined) {\n    conditions.push(`status = ?`);\n    params.push(options.status);\n  }\n\n  if (options.agent !== undefined) {\n    conditions.push(`agent = ?`);\n    params.push(options.agent);\n  }\n\n  if (options.search !== undefined && options.search.length > 0) {\n    conditions.push(`(title LIKE ? OR id LIKE ?)`);\n    const pattern = `%${options.search}%`;\n    params.push(pattern, pattern);\n  }\n  if (options.since !== undefined) {\n    conditions.push('created_at > ?');\n    params.push(options.since);\n  }\n\n  // Exclude active sessions only when the caller explicitly opts in and\n  // hasn't already constrained `status`. Intelligence-task reads set this\n  // to avoid picking up in-flight work; UI/CLI leave it unset.\n  if (options.includeActive === false && options.status === undefined) {\n    conditions.push(`status != 'active'`);\n  }\n\n  return {\n    where: conditions.length > 0 ? `WHERE ${conditions.join(' AND ')}` : '',\n    params,\n  };\n}\n\n/**\n * List sessions with optional filters, ordered by created_at DESC.\n */\nexport function listSessions(\n  options: ListSessionsOptions = {},\n): SessionRow[] {\n  const db = getDatabase();\n  const { where, params } = buildSessionsWhere(options);\n  const limit = options.limit ?? DEFAULT_LIST_LIMIT;\n  const offset = options.offset ?? 0;\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM sessions\n     ${where}\n     ORDER BY created_at DESC\n     LIMIT ?\n     OFFSET ?`,\n  ).all(...params, limit, offset) as Record<string, unknown>[];\n\n  return rows.map(toSessionRow);\n}\n\n/**\n * Count sessions matching optional filters (for pagination totals).\n */\nexport function countSessions(\n  options: Omit<ListSessionsOptions, 'limit' | 'offset'> = {},\n): number {\n  const db = getDatabase();\n  const { where, params } = buildSessionsWhere(options);\n\n  const row = db.prepare(\n    `SELECT COUNT(*) as count FROM sessions ${where}`,\n  ).get(...params) as { count: number };\n\n  return row.count;\n}\n\n/**\n * Return the set of session IDs currently in `status = 'active'`.\n *\n * Used by the semantic-search path, which can't apply a SQL join against\n * session status (the vector store is a separate concern), so it filters\n * results in-memory against this set instead. Bounded by the number of\n * concurrent in-flight sessions — typically small.\n */\nexport function getActiveSessionIds(): Set<string> {\n  const db = getDatabase();\n  const rows = db.prepare(\n    `SELECT id FROM sessions WHERE status = 'active'`,\n  ).all() as Array<{ id: string }>;\n  return new Set(rows.map((r) => r.id));\n}\n\n/**\n * Flip a session back to `status = 'active'` if it's currently `'completed'`.\n *\n * Called on live user activity (`user_prompt` events) so a session that was\n * auto-completed by the stale sweep or manually completed via the API snaps\n * back to active transparently when the user resumes. No-op for sessions\n * that are already active or don't exist.\n *\n * The `ended_at` column is intentionally preserved — it records the most\n * recent completion time, and the next completion will overwrite it.\n *\n * @returns true if a row was updated (session was completed and is now active)\n */\nexport function reactivateSessionIfCompleted(id: string): boolean {\n  const db = getDatabase();\n  const info = db.prepare(\n    `UPDATE sessions SET status = 'active' WHERE id = ? AND status = 'completed'`,\n  ).run(id);\n  if (info.changes === 0) return false;\n\n  const row = db.prepare(\n    `SELECT ${SELECT_COLUMNS} FROM sessions WHERE id = ?`,\n  ).get(id) as Record<string, unknown> | undefined;\n  if (row) syncRow('sessions', toSessionRow(row));\n\n  return true;\n}\n\n/**\n * Update specific fields on an existing session.\n *\n * @returns the updated row, or null if the session does not exist.\n */\nexport function updateSession(\n  id: string,\n  updates: SessionUpdate,\n): SessionRow | null {\n  const db = getDatabase();\n\n  const setClauses: string[] = [];\n  const params: unknown[] = [];\n\n  const fieldMap: Record<string, string> = {\n    agent: 'agent',\n    user: '\"user\"',\n    project_root: 'project_root',\n    branch: 'branch',\n    ended_at: 'ended_at',\n    status: 'status',\n    prompt_count: 'prompt_count',\n    tool_count: 'tool_count',\n    title: 'title',\n    summary: 'summary',\n    transcript_path: 'transcript_path',\n    parent_session_id: 'parent_session_id',\n    parent_session_reason: 'parent_session_reason',\n    processed: 'processed',\n    content_hash: 'content_hash',\n  };\n\n  for (const [key, column] of Object.entries(fieldMap)) {\n    if (key in updates) {\n      setClauses.push(`${column} = ?`);\n      params.push((updates as Record<string, unknown>)[key] ?? null);\n    }\n  }\n\n  if (setClauses.length === 0) return getSession(id);\n\n  params.push(id);\n\n  db.prepare(\n    `UPDATE sessions\n     SET ${setClauses.join(', ')}\n     WHERE id = ?`,\n  ).run(...params);\n\n  const updated = getSession(id);\n\n  if (updated) syncRow('sessions', updated);\n\n  return updated;\n}\n\n/**\n * Atomically increment tool_count for a session.\n *\n * Uses SQL `tool_count + 1` to avoid read-modify-write races.\n */\nexport function incrementSessionToolCount(id: string): void {\n  const db = getDatabase();\n  db.prepare(\n    `UPDATE sessions SET tool_count = COALESCE(tool_count, 0) + 1 WHERE id = ?`,\n  ).run(id);\n}\n\n/**\n * Close a session — set status to 'completed' and record the end time.\n *\n * @returns the updated row, or null if the session does not exist.\n */\nexport function closeSession(\n  id: string,\n  endedAt: number,\n): SessionRow | null {\n  const db = getDatabase();\n\n  db.prepare(\n    `UPDATE sessions\n     SET status = ?, ended_at = ?\n     WHERE id = ?`,\n  ).run(STATUS_COMPLETED, endedAt, id);\n\n  const closed = getSession(id);\n\n  if (closed) syncRow('sessions', closed);\n\n  return closed;\n}\n\n/**\n * Delete a session and all its child rows (batches, activities, attachments).\n *\n * No ON DELETE CASCADE in the schema, so we delete children first.\n * Returns true if the session existed and was deleted.\n */\nexport function deleteSession(id: string): boolean {\n  const db = getDatabase();\n\n  db.prepare(`DELETE FROM activities WHERE session_id = ?`).run(id);\n  db.prepare(`DELETE FROM attachments WHERE session_id = ?`).run(id);\n  db.prepare(`DELETE FROM prompt_batches WHERE session_id = ?`).run(id);\n  const info = db.prepare(`DELETE FROM sessions WHERE id = ?`).run(id);\n\n  return info.changes > 0;\n}\n\n// ---------------------------------------------------------------------------\n// Cascade delete + impact query\n// ---------------------------------------------------------------------------\n\n/** Counts of related data that would be affected by a session delete. */\nexport interface SessionImpact {\n  promptCount: number;\n  sporeCount: number;\n  attachmentCount: number;\n  graphEdgeCount: number;\n}\n\n/** Result of a cascade delete operation. */\nexport interface DeleteCascadeResult {\n  deleted: boolean;\n  counts: {\n    prompts: number;\n    spores: number;\n    attachments: number;\n    graphEdges: number;\n    resolutionEvents: number;\n  };\n  /** Spore IDs that were deleted (needed for vault file + vector cleanup). */\n  deletedSporeIds: string[];\n  /** Attachment file paths that were deleted from DB (needed for disk cleanup). */\n  deletedAttachmentPaths: string[];\n}\n\n/**\n * Get counts of all data related to a session, for pre-delete impact display.\n */\nexport function getSessionImpact(sessionId: string): SessionImpact {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT\n       (SELECT COUNT(*) FROM prompt_batches WHERE session_id = ?) AS promptCount,\n       (SELECT COUNT(*) FROM spores WHERE session_id = ?) AS sporeCount,\n       (SELECT COUNT(*) FROM attachments WHERE session_id = ?) AS attachmentCount,\n       (SELECT COUNT(*) FROM graph_edges WHERE session_id = ?) AS graphEdgeCount`,\n  ).get(sessionId, sessionId, sessionId, sessionId) as SessionImpact;\n\n  return row;\n}\n\n/**\n * Delete a session and ALL related data in a single transaction.\n *\n * Returns counts of deleted rows and IDs needed for post-transaction\n * cleanup (vault files, embedding vectors).\n */\nexport function deleteSessionCascade(sessionId: string): DeleteCascadeResult {\n  const db = getDatabase();\n\n  const zeroCounts: DeleteCascadeResult = {\n    deleted: false,\n    counts: { prompts: 0, spores: 0, attachments: 0, graphEdges: 0, resolutionEvents: 0 },\n    deletedSporeIds: [],\n    deletedAttachmentPaths: [],\n  };\n\n  // Check session exists first\n  const exists = db.prepare(`SELECT id FROM sessions WHERE id = ?`).get(sessionId);\n  if (!exists) return zeroCounts;\n\n  // Collect IDs/paths needed for post-transaction cleanup before deleting.\n  // Spores can reference prompt_batches from a different session (cross-session\n  // spore linkage), so we must also collect spores linked via prompt_batch_id.\n  const sporeIds = (db.prepare(\n    `SELECT id FROM spores\n     WHERE session_id = ?\n        OR prompt_batch_id IN (SELECT id FROM prompt_batches WHERE session_id = ?)`,\n  ).all(sessionId, sessionId) as { id: string }[]).map((r) => r.id);\n\n  const attachmentPaths = (db.prepare(\n    `SELECT file_path FROM attachments WHERE session_id = ?`,\n  ).all(sessionId) as { file_path: string }[]).map((r) => r.file_path);\n\n  // Run all deletes in a single transaction.\n  //\n  // Order matters — foreign_keys = ON is set in client.ts, so every DELETE\n  // is checked immediately. Child rows must be removed before their parents:\n  //   - spores.prompt_batch_id     → prompt_batches(id)   [spores BEFORE prompt_batches]\n  //   - plans.prompt_batch_id      → prompt_batches(id)   [plans BEFORE prompt_batches]\n  //   - resolution_events.spore_id → spores(id)           [resolution_events BEFORE spores]\n  //   - skill_usage.session_id     → sessions(id) NOT NULL\n  //   - plans.session_id           → sessions(id)\n  // resolution_events can reference spores across sessions (e.g. a later\n  // session supersedes an earlier session's spore), so we match by either\n  // session_id OR spore_id-in-this-session to catch cross-session references.\n  //\n  // Spores can also reference prompt_batches from a different session\n  // (cross-session prompt_batch_id linkage). 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package/dist/chunk-QLCD77AN.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/db/queries/turns.ts"],"sourcesContent":["/**\n * Agent turn CRUD query helpers.\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport { getDatabase } from '@myco/db/client.js';\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Fields required (or optional) when inserting a turn. */\nexport interface TurnInsert {\n  run_id: string;\n  agent_id: string;\n  turn_number: number;\n  tool_name: string;\n  tool_input?: string | null;\n  tool_output_summary?: string | null;\n  started_at?: number | null;\n  completed_at?: number | null;\n}\n\n/** Row shape returned from agent_turns queries (all columns). */\nexport interface TurnRow {\n  id: number;\n  run_id: string;\n  agent_id: string;\n  turn_number: number;\n  tool_name: string;\n  tool_input: string | null;\n  tool_output_summary: string | null;\n  started_at: number | null;\n  completed_at: number | null;\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst TURN_COLUMNS = [\n  'id',\n  'run_id',\n  'agent_id',\n  'turn_number',\n  'tool_name',\n  'tool_input',\n  'tool_output_summary',\n  'started_at',\n  'completed_at',\n] as const;\n\nconst SELECT_COLUMNS = TURN_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Normalize a SQLite result row into a typed TurnRow. */\nfunction toTurnRow(row: Record<string, unknown>): TurnRow {\n  return {\n    id: row.id as number,\n    run_id: row.run_id as string,\n    agent_id: row.agent_id as string,\n    turn_number: row.turn_number as number,\n    tool_name: row.tool_name as string,\n    tool_input: (row.tool_input as string) ?? null,\n    tool_output_summary: (row.tool_output_summary as string) ?? null,\n    started_at: (row.started_at as number) ?? null,\n    completed_at: (row.completed_at as number) ?? null,\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Insert a new agent turn.\n *\n * The `id` is auto-generated by the INTEGER PRIMARY KEY (AUTOINCREMENT).\n */\nexport function insertTurn(data: TurnInsert): TurnRow {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `INSERT INTO agent_turns (\n       run_id, agent_id, turn_number, tool_name,\n       tool_input, tool_output_summary, started_at, completed_at\n     ) VALUES (\n       ?, ?, ?, ?,\n       ?, ?, ?, ?\n     )`,\n  ).run(\n    data.run_id,\n    data.agent_id,\n    data.turn_number,\n    data.tool_name,\n    data.tool_input ?? null,\n    data.tool_output_summary ?? null,\n    data.started_at ?? null,\n    data.completed_at ?? null,\n  );\n\n  const turnId = Number(info.lastInsertRowid);\n\n  return toTurnRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM agent_turns WHERE id = ?`).get(turnId) as Record<string, unknown>,\n  );\n}\n\n/**\n * List all turns for a specific run, ordered by turn_number ASC.\n */\nexport function listTurns(runId: string): TurnRow[] {\n  const db = getDatabase();\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM agent_turns\n     WHERE run_id = ?\n     ORDER BY turn_number ASC`,\n  ).all(runId) as Record<string, unknown>[];\n\n  return rows.map(toTurnRow);\n}\n\n/**\n * List all agent turns for a run, ordered by turn_number ASC.\n *\n * Alias for `listTurns` with an explicit \"by run\" naming convention used\n * by the dashboard API layer.\n */\nexport function listTurnsByRun(runId: string): TurnRow[] {\n  return listTurns(runId);\n}\n\n/** Count tool calls by name for a specific run. */\nexport function countToolCallsByRun(\n  runId: string,\n  toolNames: string[],\n): Record<string, number> {\n  if (toolNames.length === 0) return {};\n  const db = getDatabase();\n  const placeholders = toolNames.map(() => '?').join(', ');\n  const rows = db.prepare(\n    `SELECT tool_name, COUNT(*) as count\n     FROM agent_turns\n     WHERE run_id = ? 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package/dist/chunk-UTSCRMJE.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/config/loader.ts","../src/config/schema.ts","../src/config/migrations.ts"],"sourcesContent":["import fs from 'node:fs';\nimport path from 'node:path';\nimport YAML from 'yaml';\nimport { MycoConfigSchema, type MycoConfig, type BackupConfig, type TeamConfig } from './schema.js';\nimport { runMigrations, CURRENT_MIGRATION_VERSION } from './migrations.js';\n\nexport const CONFIG_FILENAME = 'myco.yaml';\n\nexport function loadConfig(vaultDir: string): MycoConfig {\n  const configPath = path.join(vaultDir, CONFIG_FILENAME);\n\n  if (!fs.existsSync(configPath)) {\n    throw new Error(`myco.yaml not found in ${vaultDir}`);\n  }\n\n  const raw = fs.readFileSync(configPath, 'utf-8');\n  const parsed = YAML.parse(raw) as Record<string, unknown>;\n\n  // Detect v1 config and guide migration\n  if (parsed.version === 1 || (parsed.intelligence as Record<string, unknown>)?.backend) {\n    throw new Error(\n      'Myco config uses v1 format. Run /myco:setup-llm to reconfigure for v2.',\n    );\n  }\n\n  // --- v2 → v3 migration ---\n  let v2Migrated = false;\n  if (parsed.version === 2) {\n    // Extract intelligence.embedding to top-level embedding\n    const intel = parsed.intelligence as Record<string, unknown> | undefined;\n    const embeddingConfig = intel?.embedding as Record<string, unknown> | undefined;\n    if (embeddingConfig && !parsed.embedding) {\n      // Map v2 'lm-studio' to v3 'openai-compatible' for embedding provider\n      if (embeddingConfig.provider === 'lm-studio') {\n        embeddingConfig.provider = 'openai-compatible';\n      }\n      parsed.embedding = embeddingConfig;\n    }\n\n    // Keep daemon.port and daemon.log_level, drop grace_period and max_log_size\n    const daemon = parsed.daemon as Record<string, unknown> | undefined;\n    if (daemon) {\n      const { port, log_level } = daemon;\n      parsed.daemon = { port: port ?? null, log_level: log_level ?? 'info' };\n    }\n\n    // Keep capture basics, drop token-related fields; migrate artifact_watch → plan_dirs\n    const capture = parsed.capture as Record<string, unknown> | undefined;\n    if (capture) {\n      const { transcript_paths, artifact_watch, plan_dirs, artifact_extensions, buffer_max_events } = capture;\n      parsed.capture = {\n        transcript_paths,\n        plan_dirs: plan_dirs ?? artifact_watch,\n        artifact_extensions,\n        buffer_max_events,\n      };\n    }\n\n    // Drop removed top-level sections\n    delete parsed.intelligence;\n    delete parsed.context;\n    delete parsed.team;\n    delete parsed.digest;\n    delete parsed.pipeline;\n\n    // Set version to 3\n    parsed.version = 3;\n    v2Migrated = true;\n\n    process.stderr.write('[myco migration] Migrated config from v2 to v3\\n');\n  }\n\n  // Run numbered migrations (for v3+ forward migrations)\n  const migrationsRan = runMigrations(parsed, vaultDir, (msg) => {\n    process.stderr.write(`[myco migration] ${msg}\\n`);\n  });\n\n  // Parse with Zod to fill in defaults for new config sections\n  const config = MycoConfigSchema.parse(parsed);\n\n  // Write back if v2→v3 migration ran, numbered migrations ran, or new defaults were added\n  const needsWrite = v2Migrated\n    || migrationsRan\n    || (parsed.config_version as number ?? 0) < CURRENT_MIGRATION_VERSION\n    || parsed.version !== config.version;\n\n  if (needsWrite) {\n    const fullConfig = JSON.parse(JSON.stringify(config)) as Record<string, unknown>;\n    fs.writeFileSync(configPath, YAML.stringify(fullConfig), 'utf-8');\n  }\n\n  return config;\n}\n\nexport function saveConfig(vaultDir: string, config: MycoConfig): void {\n  // Validate before writing — OAK lesson: validate on write, not just read\n  const validated = MycoConfigSchema.parse(config);\n\n  const configPath = path.join(vaultDir, CONFIG_FILENAME);\n  fs.mkdirSync(vaultDir, { recursive: true });\n  fs.writeFileSync(configPath, YAML.stringify(validated), 'utf-8');\n}\n\nexport function updateConfig(\n  vaultDir: string,\n  fn: (config: MycoConfig) => MycoConfig,\n): MycoConfig {\n  const current = loadConfig(vaultDir);\n  const updated = fn(current);\n  saveConfig(vaultDir, updated);\n  return updated;\n}\n\nexport function updateBackupConfig(\n  vaultDir: string,\n  backup: Partial<BackupConfig>,\n): MycoConfig {\n  return updateConfig(vaultDir, (config) => ({\n    ...config,\n    backup: { ...config.backup, ...backup },\n  }));\n}\n\n/**\n * Extract the set of enabled symbiont names from config.\n * Returns null when the `symbionts` section is absent (pre-existing installs),\n * signalling callers to fall back to their own heuristic.\n */\nexport function getEnabledSymbiontNames(config: MycoConfig): Set<string> | null {\n  if (!config.symbionts) return null;\n  return new Set(\n    Object.entries(config.symbionts)\n      .filter(([, entry]) => entry.enabled)\n      .map(([name]) => name),\n  );\n}\n\nexport function updateTeamConfig(\n  vaultDir: string,\n  team: Partial<TeamConfig>,\n): MycoConfig {\n  return updateConfig(vaultDir, (config) => ({\n    ...config,\n    team: { ...config.team, ...team },\n  }));\n}\n","import { z } from 'zod';\nimport { SCHEDULABLE_POWER_STATES } from '@myco/constants.js';\n\nconst EmbeddingProviderSchema = z.object({\n  provider: z.enum(['ollama', 'openai-compatible', 'openrouter', 'openai']).default('ollama'),\n  model: z.string().default('bge-m3'),\n  base_url: z.string().url().optional(),\n});\n\nconst DaemonSchema = z.object({\n  port: z.number().int().min(1024).max(65535).nullable().default(null),\n  log_level: z.enum(['debug', 'info', 'warn', 'error']).default('info'),\n  log_retention_days: z.number().int().min(1).max(365).default(30),\n  /**\n   * Time without new prompts before an active session is auto-completed (ms).\n   * Intelligence tasks (full-intelligence, skill-survey, etc.) only process\n   * settled sessions, so this threshold directly controls how fresh their\n   * inputs are. Defaults to 1 hour.\n   */\n  stale_session_threshold_ms: z.number().int().min(60_000).default(60 * 60 * 1000),\n});\n\nconst CaptureSchema = z.object({\n  transcript_paths: z.array(z.string()).default([]),\n  plan_dirs: z.array(z.string()).default([]),\n  ignore_plan_dirs_in_git: z.boolean().default(false),\n  artifact_extensions: z.array(z.string()).default(['.md']),\n  buffer_max_events: z.number().int().positive().default(500),\n});\n\n/** Provider config shape used in both task-level and phase-level overrides. */\nconst ProviderOverrideSchema = z.object({\n  type: z.enum(['anthropic', 'ollama', 'lmstudio']),\n  base_url: z.string().optional(),\n  model: z.string().optional(),\n  /** Context window size for local models (Ollama num_ctx, LM Studio context_length). */\n  context_length: z.number().int().positive().optional(),\n});\n\n/** Per-phase overrides within a task — keyed by phase name. */\nconst PhaseOverrideSchema = z.object({\n  provider: ProviderOverrideSchema.optional(),\n  model: z.string().optional(),\n  maxTurns: z.number().int().positive().optional(),\n});\n\n/** Per-task schedule override — partial, merges with YAML defaults. */\nconst ScheduleOverrideSchema = z.object({\n  enabled: z.boolean().optional(),\n  intervalSeconds: z.number().int().positive().optional(),\n  runIn: z.array(z.enum([...SCHEDULABLE_POWER_STATES])).optional(),\n  preCondition: z.enum(['has-unprocessed-batches', 'has-active-skills', 'has-approved-candidates']).optional(),\n}).optional();\n\n/** Per-task config override — stored in myco.yaml under agent.tasks. */\nconst TaskProviderOverrideSchema = z.object({\n  provider: ProviderOverrideSchema.optional(),\n  model: z.string().optional(),\n  maxTurns: z.number().int().positive().optional(),\n  timeoutSeconds: z.number().int().positive().optional(),\n  phases: z.record(z.string(), PhaseOverrideSchema).optional(),\n  schedule: ScheduleOverrideSchema,\n  /** Task-specific params — keys and types vary per task. */\n  params: z.record(z.string(), z.union([z.string(), z.number(), z.boolean()])).optional(),\n});\n\nconst ContextSchema = z.object({\n  /** Which digest tier to inject at session start. */\n  digest_tier: z.number().int().default(5000),\n  /** Enable semantic spore search on each user prompt. */\n  prompt_search: z.boolean().default(true),\n  /** Max spores to inject per prompt (0-10). */\n  prompt_max_spores: z.number().int().min(0).max(10).default(3),\n});\n\nconst AgentSchema = z.object({\n  /** Number of batches between event-driven summary triggers (0 to disable). */\n  summary_batch_interval: z.number().int().min(0).default(5),\n  /** Global toggle for PowerManager-scheduled agent tasks. */\n  scheduled_tasks_enabled: z.boolean().default(true),\n  /** Global toggle for event-driven agent tasks (title-summary). */\n  event_tasks_enabled: z.boolean().default(true),\n  /** Global default provider — applies to all tasks unless overridden per-task. */\n  provider: ProviderOverrideSchema.optional(),\n  /** Global default model — applies to all tasks unless overridden per-task. */\n  model: z.string().optional(),\n  /** Per-task overrides keyed by task name. */\n  tasks: z.record(z.string(), TaskProviderOverrideSchema).optional(),\n});\n\nconst BackupSchema = z.object({\n  /** Override directory for backup files. Supports ~ for home directory. When unset, defaults to .myco/backups. */\n  dir: z.string().optional(),\n});\n\nconst MaintenanceSchema = z.object({\n  /** Automatically run PRAGMA optimize on a schedule. */\n  auto_optimize: z.boolean().default(true),\n  /** How often to run auto-optimize, in hours (1–720). */\n  auto_optimize_interval_hours: z.number().int().min(1).max(720).default(24),\n});\n\nconst TeamSchema = z.object({\n  /** Whether team sync is enabled. */\n  enabled: z.boolean().default(false),\n  /** Cloudflare Worker URL for team sync. */\n  worker_url: z.string().url().optional(),\n  /** Team identifier for sync grouping. */\n  team_id: z.string().optional(),\n  /** Sync interval in minutes. */\n  interval_minutes: z.number().int().min(1).max(1440).default(15),\n});\n\nconst SkillsSchema = z.object({\n  /** Auto-generate candidates above this confidence score. */\n  confidence_threshold: z.number().min(0).max(1).default(0.7),\n  /** Flag unused skills after this many days. */\n  usage_stale_days: z.number().int().positive().default(30),\n});\n\nconst NotificationsSchema = z.object({\n  /** Master switch — disables all notifications when false. */\n  enabled: z.boolean().default(true),\n  /** Allow browser system notifications (Notification API). */\n  system_notifications: z.boolean().default(false),\n  /** Default display mode for new notification types. */\n  default_mode: z.enum(['banner', 'summary']).default('banner'),\n  /** Per-domain settings. Keys are domain names from the registry. */\n  domains: z.record(z.string(), z.object({\n    enabled: z.boolean().default(true),\n    /** Override display mode for this domain. Omit to use global default_mode. */\n    mode: z.enum(['banner', 'summary']).optional(),\n  })).default({}),\n});\n\nconst SymbiontEntrySchema = z.object({\n  enabled: z.boolean().default(true),\n});\n\nexport const MycoConfigSchema = z.preprocess(\n  (raw: unknown) => {\n    if (raw && typeof raw === 'object' && 'curation' in raw && !('agent' in raw)) {\n      const { curation, ...rest } = raw as Record<string, unknown>;\n      return { ...rest, agent: curation };\n    }\n    return raw;\n  },\n  z.object({\n    version: z.literal(3),\n    config_version: z.number().int().nonnegative().default(0),\n    embedding: EmbeddingProviderSchema.default(() => EmbeddingProviderSchema.parse({})),\n    daemon: DaemonSchema.default(() => DaemonSchema.parse({})),\n    capture: CaptureSchema.default(() => CaptureSchema.parse({})),\n    agent: AgentSchema.default(() => AgentSchema.parse({})),\n    context: ContextSchema.default(() => ContextSchema.parse({})),\n    backup: BackupSchema.default(() => BackupSchema.parse({})),\n    maintenance: MaintenanceSchema.default(() => MaintenanceSchema.parse({})),\n    team: TeamSchema.default(() => TeamSchema.parse({})),\n    skills: SkillsSchema.default(() => SkillsSchema.parse({})),\n    notifications: NotificationsSchema.default(() => NotificationsSchema.parse({})),\n    symbionts: z.record(z.string(), SymbiontEntrySchema).optional(),\n  }),\n);\n\nexport type MycoConfig = z.output<typeof MycoConfigSchema>;\nexport type EmbeddingProviderConfig = z.infer<typeof EmbeddingProviderSchema>;\nexport type TaskProviderOverride = z.infer<typeof TaskProviderOverrideSchema>;\nexport type PhaseOverride = z.infer<typeof PhaseOverrideSchema>;\nexport type ScheduleOverride = z.infer<typeof ScheduleOverrideSchema>;\nexport type ContextConfig = z.infer<typeof ContextSchema>;\nexport type BackupConfig = z.infer<typeof BackupSchema>;\nexport type TeamConfig = z.infer<typeof TeamSchema>;\nexport type SkillsConfig = z.infer<typeof SkillsSchema>;\nexport type NotificationsConfig = z.infer<typeof NotificationsSchema>;\nexport type SymbiontEntry = z.infer<typeof SymbiontEntrySchema>;\n","/**\n * Config and vault migrations — run once per version, tracked by config_version.\n *\n * Each migration has a version number, a name, and a function that receives\n * the raw parsed YAML doc and the vault directory. Migrations run in order\n * and are skipped if config_version is already past them.\n *\n * To add a new migration:\n * 1. Add an entry to MIGRATIONS with the next version number\n * 2. Write the migrate function — it receives the mutable doc and vaultDir\n * 3. The framework handles version tracking and writing the config back\n */\n\nimport fs from 'node:fs';\nimport path from 'node:path';\n\nexport interface Migration {\n  version: number;\n  name: string;\n  migrate: (doc: Record<string, unknown>, vaultDir: string) => void;\n}\n\n/** Regex matching both quoted and unquoted YAML: type: memory, type: \"memory\", type: 'memory' */\nconst MEMORY_TYPE_PATTERN = /type:\\s*[\"']?memory[\"']?/g;\n\nexport const MIGRATIONS: Migration[] = [\n  {\n    version: 1,\n    name: 'rename-memories-to-spores',\n    migrate: (doc, vaultDir) => {\n      // Config: rename context.layers.memories → context.layers.spores\n      const context = doc.context as Record<string, unknown> | undefined;\n      const layers = context?.layers as Record<string, unknown> | undefined;\n      if (layers && 'memories' in layers && !('spores' in layers)) {\n        layers.spores = layers.memories;\n        delete layers.memories;\n      }\n\n      // Vault: rename memories/ directory → spores/\n      const memoriesDir = path.join(vaultDir, 'memories');\n      const sporesDir = path.join(vaultDir, 'spores');\n\n      if (!fs.existsSync(memoriesDir)) return;\n\n      if (fs.existsSync(sporesDir)) {\n        // Both exist (interrupted migration) — merge remaining files\n        const moveRemaining = (srcDir: string, destDir: string): void => {\n          for (const entry of fs.readdirSync(srcDir, { withFileTypes: true })) {\n            const srcPath = path.join(srcDir, entry.name);\n            const destPath = path.join(destDir, entry.name);\n            if (entry.isDirectory()) {\n              if (!fs.existsSync(destPath)) fs.mkdirSync(destPath, { recursive: true });\n              moveRemaining(srcPath, destPath);\n            } else if (!fs.existsSync(destPath)) {\n              fs.renameSync(srcPath, destPath);\n            }\n          }\n        };\n        moveRemaining(memoriesDir, sporesDir);\n        fs.rmSync(memoriesDir, { recursive: true, force: true });\n      } else {\n        fs.renameSync(memoriesDir, sporesDir);\n      }\n\n      // Update frontmatter type: memory → type: spore (handles quoted and unquoted)\n      const walkUpdate = (dir: string): void => {\n        for (const entry of fs.readdirSync(dir, { withFileTypes: true })) {\n          const fullPath = path.join(dir, entry.name);\n          if (entry.isDirectory()) { walkUpdate(fullPath); continue; }\n          if (!entry.name.endsWith('.md')) continue;\n          const content = fs.readFileSync(fullPath, 'utf-8');\n          MEMORY_TYPE_PATTERN.lastIndex = 0;\n          if (MEMORY_TYPE_PATTERN.test(content)) {\n            MEMORY_TYPE_PATTERN.lastIndex = 0;\n            fs.writeFileSync(fullPath, content.replace(MEMORY_TYPE_PATTERN, 'type: spore'));\n          }\n        }\n      };\n      walkUpdate(sporesDir);\n\n      // Legacy: update wikilink references in Markdown files (pre-SQLite migration): [[memories/...]] → [[spores/...]]\n      const walkLinks = (dir: string): void => {\n        for (const entry of fs.readdirSync(dir, { withFileTypes: true })) {\n          const fullPath = path.join(dir, entry.name);\n          if (entry.isDirectory()) { walkLinks(fullPath); continue; }\n          if (!entry.name.endsWith('.md')) continue;\n          const content = fs.readFileSync(fullPath, 'utf-8');\n          if (content.includes('memories/')) {\n            fs.writeFileSync(fullPath, content.replace(/memories\\//g, 'spores/'));\n          }\n        }\n      };\n      walkLinks(vaultDir);\n    },\n  },\n  {\n    version: 2,\n    name: 'consolidation-boolean-to-object',\n    migrate: (doc) => {\n      const digest = doc.digest as Record<string, unknown> | undefined;\n      if (!digest) return;\n\n      const consolidation = digest.consolidation;\n      if (typeof consolidation === 'boolean') {\n        digest.consolidation = { enabled: consolidation, max_tokens: 2048 };\n      }\n    },\n  },\n  {\n    version: 3,\n    name: 'schedule-to-task-level',\n    migrate(doc: Record<string, unknown>, _vaultDir: string): void {\n      const agent = (doc.agent ?? {}) as Record<string, unknown>;\n      const skills = (doc.skills ?? {}) as Record<string, unknown>;\n      const tasks = ((agent.tasks ?? {}) as Record<string, Record<string, unknown>>);\n\n      /** Default interval for full-intelligence task (5 minutes). */\n      const DEFAULT_INTELLIGENCE_INTERVAL_SECONDS = 300;\n\n      const VALID_SCHEDULE_STATES = ['active', 'idle', 'sleep'] as const;\n\n      // Migrate agent.auto_run + interval_seconds → full-intelligence schedule\n      if ('auto_run' in agent || 'interval_seconds' in agent) {\n        const fiTask = tasks['full-intelligence'] ?? {};\n        fiTask.schedule = {\n          enabled: agent.auto_run ?? true,\n          intervalSeconds: agent.interval_seconds ?? DEFAULT_INTELLIGENCE_INTERVAL_SECONDS,\n        };\n        tasks['full-intelligence'] = fiTask;\n        delete agent.auto_run;\n        delete agent.interval_seconds;\n      }\n\n      // Migrate skills.auto_survey → skill-survey schedule\n      if ('auto_survey' in skills) {\n        const ssTask = tasks['skill-survey'] ?? {};\n        ssTask.schedule = {\n          enabled: skills.auto_survey ?? false,\n        };\n        tasks['skill-survey'] = ssTask;\n        delete skills.auto_survey;\n      }\n\n      // Migrate skills.auto_evolve + evolve_cadence → skill-evolve schedule\n      if ('auto_evolve' in skills || 'evolve_cadence' in skills) {\n        const seTask = tasks['skill-evolve'] ?? {};\n        const schedule: Record<string, unknown> = {\n          enabled: skills.auto_evolve ?? false,\n        };\n        if ('evolve_cadence' in skills) {\n          const cadence = String(skills.evolve_cadence);\n          schedule.runIn = VALID_SCHEDULE_STATES.includes(cadence as typeof VALID_SCHEDULE_STATES[number])\n            ? 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unknown>).type = 'anthropic';\n        }\n      };\n\n      const agent = doc.agent as Record<string, unknown> | undefined;\n      if (!agent) return;\n\n      // Global default provider\n      renameProvider(agent.provider);\n\n      // Per-task overrides\n      const tasks = agent.tasks as Record<string, Record<string, unknown>> | undefined;\n      if (tasks) {\n        for (const taskConfig of Object.values(tasks)) {\n          renameProvider(taskConfig.provider);\n\n          // Per-phase overrides within a task\n          const phases = taskConfig.phases as Record<string, Record<string, unknown>> | undefined;\n          if (phases) {\n            for (const phaseConfig of Object.values(phases)) {\n              renameProvider(phaseConfig.provider);\n            }\n          }\n        }\n      }\n    },\n  },\n];\n\n/** Current migration version — the highest version in MIGRATIONS. */\nexport const CURRENT_MIGRATION_VERSION = MIGRATIONS[MIGRATIONS.length - 1]?.version ?? 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package/dist/chunk-UVKQ62II.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/symbionts/manifest-schema.ts","../src/symbionts/detect.ts"],"sourcesContent":["import { z } from 'zod';\n\n/**\n * Declarative capture rules owned per-symbiont in its YAML manifest.\n *\n * Rules let each symbiont describe how Myco should filter or rewrite\n * captured events *without* adding symbiont-specific branches inside\n * the generic hook handlers. The hook loads the rules, a generic\n * evaluator decides the action, and the hook acts on the result.\n *\n * Condition types (in `when`):\n *   - `transcript_path_missing`: structural. Fires when the hook's\n *     transcript_path field is absent/empty. A legitimate user-facing\n *     session records a transcript; an ephemeral sub-invocation (e.g.,\n *     an agent's internal title-generation call) does not. Preferred\n *     over text matching because it doesn't drift as UIs evolve.\n *   - `prompt_starts_with` / `prompt_contains`: text fallback. Use\n *     when no structural signal is available. Document the upgrade path\n *     in the YAML so future maintainers can replace it when a better\n *     signal appears.\n *\n * Scope semantics:\n *   - `this_agent` (default): rule fires only when the detected agent\n *     matches the manifest that owns the rule. Use for behavior that\n *     is specific to the symbiont and can rely on detection working.\n *   - `any_agent`: rule fires regardless of detected agent. Use for\n *     patterns where detection itself might fail — e.g., an internal\n *     sub-invocation that omits the fields agent detection keys on.\n *\n * Events:\n *   - `session_start`: fires on SessionStart, before any prompts or\n *     tools are captured. The right place to catch ephemeral sub-\n *     invocations so they're never registered as sessions at all.\n *   - `user_prompt`: fires on UserPromptSubmit. Safety net for anything\n *     that slips past session_start, and the only layer where\n *     `rewrite_prompt` makes sense (prompt text doesn't exist until\n *     the prompt is submitted).\n *\n * Actions:\n *   - `drop`: discard the event entirely. For session_start, the hook\n *     skips registering the session row. For user_prompt, the hook\n *     skips posting the event and cascade-deletes any session row that\n *     may have been registered before the drop rule could fire.\n *   - `rewrite_prompt`: replace the captured prompt with the substring\n *     after `extract_after`. Only valid for `user_prompt` events.\n */\nconst CaptureRuleSchema = z.object({\n  event: z.enum(['session_start', 'user_prompt']),\n  scope: z.enum(['this_agent', 'any_agent']).default('this_agent'),\n  when: z.object({\n    prompt_starts_with: z.string().optional(),\n    prompt_contains: z.string().optional(),\n    /** Structural: fires when transcript_path is absent or empty. */\n    transcript_path_missing: z.boolean().optional(),\n    /**\n     * Structural: fires when a dot-path field exists (and is truthy) in the\n     * transcript's first JSON line (session_meta). Use for detecting sub-agent\n     * sessions that have real transcript files but are not user-initiated.\n     *\n     * Example: `source.subagent` matches a Codex thread-spawn session whose\n     * session_meta has `\"source\": {\"subagent\": {...}}` but would NOT match\n     * a user session with `\"source\": \"vscode\"`.\n     *\n     * The hook handler reads the transcript and passes the parsed meta to\n     * the evaluator — the evaluator itself does no file I/O.\n     */\n    transcript_meta_field_exists: z.string().optional(),\n  }),\n  action: z.enum(['drop', 'rewrite_prompt']),\n  /** Short audit string logged when the rule matches (e.g., \"codex-internal-title-gen\"). */\n  reason: z.string().optional(),\n  /** For rewrite_prompt: keep only the substring after this marker (first occurrence). */\n  extract_after: z.string().optional(),\n  /** For rewrite_prompt: trim whitespace from the extracted substring. Default true. */\n  trim: z.boolean().default(true),\n});\n\nexport type CaptureRule = z.infer<typeof CaptureRuleSchema>;\n\nconst CaptureManifestSchema = z.object({\n  planDirs: z.array(z.string()).default([]),\n  planTags: z.array(z.string()).default([]),\n  rules: z.array(CaptureRuleSchema).default([]),\n});\n\nconst RegistrationSchema = z.object({\n  hooksTarget: z.string().optional(),\n  /**\n   * Format of the hooks target.\n   * - 'json' (default): hooks template is merged into a JSON settings file.\n   * - 'plugin-file': the hooks template is a verbatim file (e.g., an opencode TS plugin)\n   *   copied to hooksTarget without JSON parsing. Used for agents with plugin-based hook\n   *   systems rather than JSON hook entries.\n   */\n  hooksFormat: z.enum(['json', 'plugin-file']).default('json'),\n  /**\n   * Optional file path for a plugin deps package.json. When set, the installer writes\n   * a package.json declaring the plugin SDK dependency so the agent's package manager\n   * (e.g., opencode's Bun) can install it at startup. Preserved on uninstall so\n   * contributors can keep their own deps.\n   */\n  pluginPackageTarget: z.string().optional(),\n  mcpTarget: z.string().optional(),\n  mcpFormat: z.enum(['json', 'toml']).default('json'),\n  /**\n   * JSON key under which MCP server entries are stored in the MCP config file.\n   * Defaults to 'mcpServers' (used by Claude Code, Cursor, etc.). opencode uses 'mcp'.\n   */\n  mcpServersKey: z.string().default('mcpServers'),\n  skillsTarget: z.string().optional(),\n  settingsTarget: z.string().optional(),\n  /** Format of the settings file. TOML-format agents (e.g., Codex) emit top-level template keys as TOML sections. */\n  settingsFormat: z.enum(['json', 'toml']).default('json'),\n  /** Instruction file that stubs out to AGENTS.md. Only for agents that don't read AGENTS.md natively. */\n  instructionsFile: z.string().optional(),\n});\n\nexport const SymbiontManifestSchema = z.object({\n  name: z.string(),\n  displayName: z.string(),\n  binary: z.string(),\n  configDir: z.string(),\n  pluginRootEnvVar: z.string(),\n  settingsPath: z.string().optional(),\n  hookFields: z.object({\n    sessionId: z.string(),\n    transcriptPath: z.string(),\n    lastResponse: z.string(),\n    prompt: z.string().default('prompt'),\n    toolName: z.string().default('tool_name'),\n    toolInput: z.string().default('tool_input'),\n    toolOutput: z.string().default('tool_output'),\n    /** Env var fallback for session ID (e.g., GEMINI_SESSION_ID). */\n    sessionIdEnv: z.string().optional(),\n  }),\n  /** Resume command template with {sessionId} placeholder. Omit for IDE-based agents. */\n  resumeCommand: z.string().optional(),\n  capture: CaptureManifestSchema.optional(),\n  registration: RegistrationSchema.optional(),\n});\n\nexport type SymbiontManifest = z.infer<typeof SymbiontManifestSchema>;\nexport type SymbiontRegistration = z.infer<typeof RegistrationSchema>;\n","import { SymbiontManifestSchema, type SymbiontManifest } from './manifest-schema.js';\nimport { findPackageRoot } from '../utils/find-package-root.js';\nimport { execFileSync } from 'node:child_process';\nimport fs from 'node:fs';\nimport path from 'node:path';\nimport YAML from 'yaml';\n\nexport interface DetectedSymbiont {\n  manifest: SymbiontManifest;\n  binaryFound: boolean;\n  configDirFound: boolean;\n}\n\nconst MANIFESTS_SUBDIR = 'symbionts/manifests';\n\n/** Cached manifests — static files that never change at runtime. */\nlet manifestCache: SymbiontManifest[] | null = null;\n\n/** Load all symbiont manifests from the package's dist directory. */\nexport function loadManifests(): SymbiontManifest[] {\n  if (manifestCache) return manifestCache;\n  const candidates = [\n    // Source layout: src/symbionts/detect.ts → src/symbionts/manifests/\n    path.resolve(import.meta.dirname, MANIFESTS_SUBDIR),\n    // Dist layout: dist/src/symbionts/ → dist/src/symbionts/manifests/\n    // (or dist/src/daemon/ → dist/src/symbionts/manifests/)\n    path.resolve(import.meta.dirname, '..', MANIFESTS_SUBDIR),\n    path.resolve(import.meta.dirname, '..', '..', MANIFESTS_SUBDIR),\n    // Chunk layout: dist/chunk-*.js → dist/src/symbionts/manifests/\n    path.resolve(import.meta.dirname, 'src', MANIFESTS_SUBDIR),\n  ];\n\n  for (const dir of candidates) {\n    if (!fs.existsSync(dir)) continue;\n    const files = fs.readdirSync(dir).filter(f => f.endsWith('.yaml'));\n    if (files.length === 0) continue;\n    manifestCache = files.map(f => {\n      const raw = YAML.parse(fs.readFileSync(path.join(dir, f), 'utf-8'));\n      return SymbiontManifestSchema.parse(raw);\n    });\n    return manifestCache;\n  }\n  return [];\n}\n\n/** Check if a binary is available on PATH. */\nfunction isBinaryOnPath(binary: string): boolean {\n  try {\n    execFileSync('which', [binary], { stdio: 'pipe' });\n    return true;\n  } catch {\n    return false;\n  }\n}\n\n/** Detect which symbionts are available for a project. */\nexport function detectSymbionts(projectRoot: string): DetectedSymbiont[] {\n  const manifests = loadManifests();\n  return manifests.map(manifest => ({\n    manifest,\n    binaryFound: isBinaryOnPath(manifest.binary),\n    configDirFound: fs.existsSync(path.join(projectRoot, manifest.configDir)),\n  })).filter(d => d.binaryFound || d.configDirFound);\n}\n\n/** Find the Myco package root (where package.json lives). */\nexport function resolvePackageRoot(): string {\n  return findPackageRoot(import.meta.dirname) ?? 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package/dist/chunk-VQF5E4ZX.js

@@ -1,91 +0,0 @@
-import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
-import {
-  getTeamMachineId,
-  syncRow
-} from "./chunk-AULBWINA.js";
-import {
-  getDatabase
-} from "./chunk-MYX5NCRH.js";
-
-// src/db/queries/resolution-events.ts
-var DEFAULT_LIST_LIMIT = 100;
-var EVENT_COLUMNS = [
-  "id",
-  "agent_id",
-  "spore_id",
-  "action",
-  "new_spore_id",
-  "reason",
-  "session_id",
-  "created_at",
-  "machine_id",
-  "synced_at"
-];
-var SELECT_COLUMNS = EVENT_COLUMNS.join(", ");
-function toResolutionEventRow(row) {
-  return {
-    id: row.id,
-    agent_id: row.agent_id,
-    spore_id: row.spore_id,
-    action: row.action,
-    new_spore_id: row.new_spore_id ?? null,
-    reason: row.reason ?? null,
-    session_id: row.session_id ?? null,
-    created_at: row.created_at,
-    machine_id: row.machine_id ?? "local",
-    synced_at: row.synced_at ?? null
-  };
-}
-function insertResolutionEvent(data) {
-  const db = getDatabase();
-  db.prepare(
-    `INSERT INTO resolution_events (
-       id, agent_id, spore_id, action, new_spore_id, reason, session_id, created_at, machine_id
-     ) VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)`
-  ).run(
-    data.id,
-    data.agent_id,
-    data.spore_id,
-    data.action,
-    data.new_spore_id ?? null,
-    data.reason ?? null,
-    data.session_id ?? null,
-    data.created_at,
-    data.machine_id ?? getTeamMachineId()
-  );
-  const row = toResolutionEventRow(
-    db.prepare(`SELECT ${SELECT_COLUMNS} FROM resolution_events WHERE id = ?`).get(data.id)
-  );
-  syncRow("resolution_events", row);
-  return row;
-}
-function listResolutionEvents(options = {}) {
-  const db = getDatabase();
-  const conditions = [];
-  const params = [];
-  if (options.agent_id !== void 0) {
-    conditions.push(`agent_id = ?`);
-    params.push(options.agent_id);
-  }
-  if (options.spore_id !== void 0) {
-    conditions.push(`spore_id = ?`);
-    params.push(options.spore_id);
-  }
-  const where = conditions.length > 0 ? `WHERE ${conditions.join(" AND ")}` : "";
-  const limit = options.limit ?? DEFAULT_LIST_LIMIT;
-  params.push(limit);
-  const rows = db.prepare(
-    `SELECT ${SELECT_COLUMNS}
-     FROM resolution_events
-     ${where}
-     ORDER BY created_at DESC
-     LIMIT ?`
-  ).all(...params);
-  return rows.map(toResolutionEventRow);
-}
-
-export {
-  insertResolutionEvent,
-  listResolutionEvents
-};
-//# sourceMappingURL=chunk-VQF5E4ZX.js.map

package/dist/chunk-VQF5E4ZX.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/db/queries/resolution-events.ts"],"sourcesContent":["/**\n * Resolution event CRUD query helpers.\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport { getDatabase } from '@myco/db/client.js';\nimport { getTeamMachineId } from '@myco/daemon/team-context.js';\nimport { syncRow } from '@myco/db/queries/team-outbox.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Default number of events returned by listResolutionEvents when no limit given. */\nconst DEFAULT_LIST_LIMIT = 100;\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Fields required (or optional) when inserting a resolution event. */\nexport interface ResolutionEventInsert {\n  id: string;\n  agent_id: string;\n  spore_id: string;\n  action: string;\n  created_at: number;\n  new_spore_id?: string | null;\n  reason?: string | null;\n  session_id?: string | null;\n  machine_id?: string;\n}\n\n/** Row shape returned from resolution_events queries (all columns). */\nexport interface ResolutionEventRow {\n  id: string;\n  agent_id: string;\n  spore_id: string;\n  action: string;\n  new_spore_id: string | null;\n  reason: string | null;\n  session_id: string | null;\n  created_at: number;\n  machine_id: string;\n  synced_at: number | null;\n}\n\n/** Filter options for `listResolutionEvents`. */\nexport interface ListResolutionEventsOptions {\n  agent_id?: string;\n  spore_id?: string;\n  limit?: number;\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst EVENT_COLUMNS = [\n  'id',\n  'agent_id',\n  'spore_id',\n  'action',\n  'new_spore_id',\n  'reason',\n  'session_id',\n  'created_at',\n  'machine_id',\n  'synced_at',\n] as const;\n\nconst SELECT_COLUMNS = EVENT_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Normalize a SQLite result row into a typed ResolutionEventRow. */\nfunction toResolutionEventRow(row: Record<string, unknown>): ResolutionEventRow {\n  return {\n    id: row.id as string,\n    agent_id: row.agent_id as string,\n    spore_id: row.spore_id as string,\n    action: row.action as string,\n    new_spore_id: (row.new_spore_id as string) ?? null,\n    reason: (row.reason as string) ?? null,\n    session_id: (row.session_id as string) ?? null,\n    created_at: row.created_at as number,\n    machine_id: (row.machine_id as string) ?? 'local',\n    synced_at: (row.synced_at as number) ?? null,\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Insert a new resolution event.\n */\nexport function insertResolutionEvent(\n  data: ResolutionEventInsert,\n): ResolutionEventRow {\n  const db = getDatabase();\n\n  db.prepare(\n    `INSERT INTO resolution_events (\n       id, agent_id, spore_id, action, new_spore_id, reason, session_id, created_at, machine_id\n     ) VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)`,\n  ).run(\n    data.id,\n    data.agent_id,\n    data.spore_id,\n    data.action,\n    data.new_spore_id ?? null,\n    data.reason ?? null,\n    data.session_id ?? null,\n    data.created_at,\n    data.machine_id ?? getTeamMachineId(),\n  );\n\n  const row = toResolutionEventRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM resolution_events WHERE id = ?`).get(data.id) as Record<string, unknown>,\n  );\n\n  syncRow('resolution_events', row);\n\n  return row;\n}\n\n/**\n * List resolution events with optional filters, ordered by created_at DESC.\n */\nexport function listResolutionEvents(\n  options: ListResolutionEventsOptions = {},\n): ResolutionEventRow[] {\n  const db = getDatabase();\n\n  const conditions: string[] = [];\n  const params: unknown[] = [];\n\n  if (options.agent_id !== undefined) {\n    conditions.push(`agent_id = ?`);\n    params.push(options.agent_id);\n  }\n\n  if (options.spore_id !== undefined) {\n    conditions.push(`spore_id = ?`);\n    params.push(options.spore_id);\n  }\n\n  const where = conditions.length > 0 ? `WHERE ${conditions.join(' AND ')}` : '';\n  const limit = options.limit ?? 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