@goondocks/myco 0.19.4 → 0.19.6

package/dist/{config-2KQ45OC5.js → config-IO5WALOD.js}

@@ -5,7 +5,7 @@ import {
 import {
   loadConfig,
   updateConfig
-} from "./chunk-3C4LT4BW.js";
+} from "./chunk-NKQZ73LL.js";
 import "./chunk-I54KLC6H.js";
 import "./chunk-UUHLLQXO.js";
 import "./chunk-6LQIMRTC.js";
@@ -87,4 +87,4 @@ function parseValue(raw) {
 export {
   run
 };
-//# sourceMappingURL=config-2KQ45OC5.js.map
+//# sourceMappingURL=config-IO5WALOD.js.map

package/dist/{doctor-L4LWMJYH.js → doctor-EE6GAC54.js}

@@ -1,18 +1,22 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   isProcessAlive
-} from "./chunk-5B2ORGTF.js";
+} from "./chunk-NCBLB2C6.js";
 import "./chunk-SAKJMNSR.js";
 import {
   MYCO_MCP_SERVER_NAME
-} from "./chunk-WYOE4IAX.js";
+} from "./chunk-TMNFCUAD.js";
 import "./chunk-PMT2LSTQ.js";
+import "./chunk-NKQZ73LL.js";
 import "./chunk-MYX5NCRH.js";
-import "./chunk-W3P6MHLQ.js";
-import "./chunk-NTWJR6KH.js";
+import "./chunk-QH5HS54N.js";
+import "./chunk-ST2D3SGM.js";
 import "./chunk-LPUQPDC2.js";
 import "./chunk-I54KLC6H.js";
 import "./chunk-UUHLLQXO.js";
+import "./chunk-6LQIMRTC.js";
+import "./chunk-ODXLRR4U.js";
+import "./chunk-U6PF3YII.js";
 import "./chunk-PZUWP5VK.js";
 
 // src/cli/doctor.ts
@@ -29,7 +33,7 @@ async function checkVault(vaultDir) {
     return { check: { name: "Vault", status: "fail", detail: `${CONFIG_FILENAME} not found in ${vaultDir}`, fixable: false }, config: null };
   }
   try {
-    const { loadConfig } = await import("./loader-JG5OBPB6.js");
+    const { loadConfig } = await import("./loader-V774GZU4.js");
     const config = loadConfig(vaultDir);
     return { check: { name: "Vault", status: "ok", detail: `.myco/ (v${config.version})`, fixable: false }, config };
   } catch (err) {
@@ -97,7 +101,7 @@ async function checkEmbeddings(config) {
 async function checkAgents(vaultDir, config) {
   try {
     const { detectSymbionts } = await import("./detect-BEOIHGBC.js");
-    const { getEnabledSymbiontNames } = await import("./loader-JG5OBPB6.js");
+    const { getEnabledSymbiontNames } = await import("./loader-V774GZU4.js");
     const projectRoot = path.dirname(vaultDir);
     const detected = detectSymbionts(projectRoot);
     const enabledNames = config ? getEnabledSymbiontNames(config) : null;
@@ -271,4 +275,4 @@ export {
   run,
   runChecks
 };
-//# sourceMappingURL=doctor-L4LWMJYH.js.map
+//# sourceMappingURL=doctor-EE6GAC54.js.map

package/dist/{doctor-L4LWMJYH.js.map → doctor-EE6GAC54.js.map}

@@ -1 +1 @@
-{"version":3,"sources":["../src/cli/doctor.ts"],"sourcesContent":["/**\n * CLI: myco doctor — check vault health and auto-repair fixable issues.\n *\n * Runs a series of health checks against the vault directory and reports\n * status. With --fix, attempts to repair issues it can handle automatically.\n */\n\nimport fs from 'node:fs';\nimport path from 'node:path';\nimport { isProcessAlive } from './shared.js';\nimport { MYCO_MCP_SERVER_NAME } from '../symbionts/installer.js';\n\n// --- Named constants (no magic literals) ---\n\n\n/** Filename of the vault config file. */\nconst CONFIG_FILENAME = 'myco.yaml';\n\n/** Filename of the daemon state file. */\nconst DAEMON_STATE_FILENAME = 'daemon.json';\n\n/** Filename of the SQLite database. */\nconst DB_FILENAME = 'myco.db';\n\n/** Column width for the check name in output. */\nconst NAME_COL_WIDTH = 17;\n\n/** Prefix for indented continuation lines (e.g. multi-line agent output). */\nconst CONTINUATION_INDENT = ' '.repeat(NAME_COL_WIDTH);\n\n// --- Types ---\n\nexport interface DoctorCheck {\n  name: string;\n  status: 'ok' | 'fail' | 'warn';\n  detail: string;\n  fixable: boolean;\n}\n\n// --- Checks ---\n\n/** Check that myco.yaml exists and parses. Returns the parsed config on success. */\nasync function checkVault(vaultDir: string): Promise<{ check: DoctorCheck; config: import('../config/schema.js').MycoConfig | null }> {\n  const configPath = path.join(vaultDir, CONFIG_FILENAME);\n  if (!fs.existsSync(configPath)) {\n    return { check: { name: 'Vault', status: 'fail', detail: `${CONFIG_FILENAME} not found in ${vaultDir}`, fixable: false }, config: null };\n  }\n  try {\n    const { loadConfig } = await import('../config/loader.js');\n    const config = loadConfig(vaultDir);\n    return { check: { name: 'Vault', status: 'ok', detail: `.myco/ (v${config.version})`, fixable: false }, config };\n  } catch (err) {\n    return { check: { name: 'Vault', status: 'fail', detail: `${CONFIG_FILENAME} parse error: ${(err as Error).message}`, fixable: false }, config: null };\n  }\n}\n\n/** Check that the SQLite database exists and can be queried. */\nasync function checkDatabase(vaultDir: string): Promise<DoctorCheck> {\n  const dbPath = path.join(vaultDir, DB_FILENAME);\n  if (!fs.existsSync(dbPath)) {\n    return { name: 'Database', status: 'fail', detail: `${DB_FILENAME} not found — run \\`myco init\\``, fixable: false };\n  }\n  try {\n    const { initDatabase, closeDatabase, vaultDbPath } = await import('../db/client.js');\n    const db = initDatabase(vaultDbPath(vaultDir));\n    const row = db.prepare('SELECT count(*) AS cnt FROM sessions').get() as { cnt: number } | undefined;\n    const count = row?.cnt ?? 0;\n    closeDatabase();\n    return { name: 'Database', status: 'ok', detail: `${DB_FILENAME} (${count.toLocaleString()} sessions)`, fixable: false };\n  } catch (err) {\n    // Ensure DB is closed even on error\n    try { const { closeDatabase } = await import('../db/client.js'); closeDatabase(); } catch { /* ignore */ }\n    return { name: 'Database', status: 'fail', detail: `Database error: ${(err as Error).message}`, fixable: false };\n  }\n}\n\n/** Check that the intelligence (agent) provider is configured. */\nasync function checkIntelligence(config: import('../config/schema.js').MycoConfig): Promise<DoctorCheck> {\n  try {\n    const provider = config.agent.provider;\n\n    if (!provider) {\n      return { name: 'Intelligence', status: 'warn', detail: 'No agent provider configured — run `myco init` to set up', fixable: false };\n    }\n\n    const label = `${provider.type}${provider.model ? ` / ${provider.model}` : ''}`;\n\n    if (provider.type === 'anthropic') {\n      return { name: 'Intelligence', status: 'ok', detail: `${label} (SDK handles auth)`, fixable: false };\n    }\n\n    // Local provider — check reachability\n    if (provider.type === 'ollama' || provider.type === 'lmstudio') {\n      const { checkLocalProvider } = await import('../intelligence/provider-check.js');\n      const status = await checkLocalProvider(provider.type, provider.base_url);\n      if (!status.available) {\n        return { name: 'Intelligence', status: 'warn', detail: `${label} (not reachable)`, fixable: false };\n      }\n      return { name: 'Intelligence', status: 'ok', detail: label, fixable: false };\n    }\n\n    return { name: 'Intelligence', status: 'ok', detail: label, fixable: false };\n  } catch (err) {\n    return { name: 'Intelligence', status: 'fail', detail: `Intelligence check failed: ${(err as Error).message}`, fixable: false };\n  }\n}\n\n/** Check that the embedding provider is configured and reachable. */\nasync function checkEmbeddings(config: import('../config/schema.js').MycoConfig): Promise<DoctorCheck> {\n  try {\n    const { createEmbeddingProvider } = await import('../intelligence/llm.js');\n    const provider = createEmbeddingProvider(config.embedding);\n    const available = await provider.isAvailable();\n    const label = `${config.embedding.provider} / ${config.embedding.model}`;\n    if (available) {\n      return { name: 'Embeddings', status: 'ok', detail: label, fixable: false };\n    }\n    return { name: 'Embeddings', status: 'warn', detail: `${label} (not reachable)`, fixable: false };\n  } catch (err) {\n    return { name: 'Embeddings', status: 'fail', detail: `Embedding check failed: ${(err as Error).message}`, fixable: false };\n  }\n}\n\n/** Check symbiont detection and registration status. */\nasync function checkAgents(vaultDir: string, config: import('../config/schema.js').MycoConfig | null): Promise<DoctorCheck[]> {\n  try {\n    const { detectSymbionts } = await import('../symbionts/detect.js');\n    const { getEnabledSymbiontNames } = await import('../config/loader.js');\n    const projectRoot = path.dirname(vaultDir);\n    const detected = detectSymbionts(projectRoot);\n\n    const enabledNames = config ? getEnabledSymbiontNames(config) : null;\n\n    if (detected.length === 0 && !enabledNames) {\n      return [{ name: 'Agents', status: 'warn', detail: 'No symbionts detected', fixable: false }];\n    }\n\n    const checks: DoctorCheck[] = [];\n    for (const d of detected) {\n      const registered = isSymbiontRegistered(d, projectRoot);\n      const enabled = enabledNames ? enabledNames.has(d.manifest.name) : registered;\n\n      if (enabled && registered) {\n        checks.push({\n          name: checks.length === 0 ? 'Agents' : '',\n          status: 'ok',\n          detail: `${d.manifest.displayName} (enabled, registered)`,\n          fixable: false,\n        });\n      } else if (enabled && !registered) {\n        checks.push({\n          name: checks.length === 0 ? 'Agents' : '',\n          status: 'warn',\n          detail: `${d.manifest.displayName} (enabled but not registered — run \\`myco update\\`)`,\n          fixable: false,\n        });\n      } else if (!enabled && registered) {\n        checks.push({\n          name: checks.length === 0 ? 'Agents' : '',\n          status: 'warn',\n          detail: `${d.manifest.displayName} (registered but not enabled — run \\`myco remove --symbiont ${d.manifest.name}\\`)`,\n          fixable: false,\n        });\n      } else {\n        // Detected but neither enabled nor registered\n        checks.push({\n          name: checks.length === 0 ? 'Agents' : '',\n          status: 'ok',\n          detail: `${d.manifest.displayName} (detected, not enabled)`,\n          fixable: false,\n        });\n      }\n    }\n\n    if (checks.length === 0) {\n      return [{ name: 'Agents', status: 'warn', detail: 'No symbionts detected or enabled', fixable: false }];\n    }\n\n    return checks;\n  } catch (err) {\n    return [{ name: 'Agents', status: 'fail', detail: `Agent check failed: ${(err as Error).message}`, fixable: false }];\n  }\n}\n\n/** Check if a symbiont has the Myco MCP server registered. */\nfunction isSymbiontRegistered(\n  d: import('../symbionts/detect.js').DetectedSymbiont,\n  projectRoot: string,\n): boolean {\n  try {\n    const mcpTarget = d.manifest.registration?.mcpTarget;\n    if (!mcpTarget) return false;\n\n    const mcpFile = path.join(projectRoot, mcpTarget);\n    const raw = fs.readFileSync(mcpFile, 'utf-8');\n\n    // TOML: check for section header\n    if (mcpTarget.endsWith('.toml')) {\n      return raw.includes(`[mcp_servers.${MYCO_MCP_SERVER_NAME}]`);\n    }\n\n    // JSON: check for server entry under the configured key (defaults to 'mcpServers').\n    // opencode uses 'mcp' — without the manifest lookup, doctor reports opencode as\n    // unregistered even after a successful install.\n    const config = JSON.parse(raw) as Record<string, unknown>;\n    const serversKey = d.manifest.registration?.mcpServersKey ?? 'mcpServers';\n    const servers = config[serversKey] as Record<string, unknown> | undefined;\n    return !!servers?.[MYCO_MCP_SERVER_NAME];\n  } catch { /* config missing or malformed */ }\n  return false;\n}\n\n/** Check the daemon state file and process liveness. */\nasync function checkDaemon(vaultDir: string): Promise<DoctorCheck> {\n  const daemonFile = path.join(vaultDir, DAEMON_STATE_FILENAME);\n  if (!fs.existsSync(daemonFile)) {\n    return { name: 'Daemon', status: 'warn', detail: 'Not running (no daemon.json)', fixable: false };\n  }\n  try {\n    const state = JSON.parse(fs.readFileSync(daemonFile, 'utf-8')) as { pid?: number; port?: number };\n    if (!state.pid) {\n      return { name: 'Daemon', status: 'warn', detail: 'daemon.json exists but no PID', fixable: true };\n    }\n    if (isProcessAlive(state.pid)) {\n      return { name: 'Daemon', status: 'ok', detail: `PID ${state.pid}, port ${state.port ?? 'unknown'}`, fixable: false };\n    }\n    return { name: 'Daemon', status: 'warn', detail: `Stale daemon.json (PID ${state.pid} not running)`, fixable: true };\n  } catch (err) {\n    return { name: 'Daemon', status: 'fail', detail: `daemon.json parse error: ${(err as Error).message}`, fixable: true };\n  }\n}\n\n\n// --- Public API ---\n\n/** Run all health checks against a vault directory. */\nexport async function runChecks(vaultDir: string): Promise<DoctorCheck[]> {\n  const { check: vaultCheck, config } = await checkVault(vaultDir);\n  const checks: DoctorCheck[] = [vaultCheck];\n\n  if (!config) {\n    checks.push(\n      { name: 'Database', status: 'fail', detail: 'Skipped (vault check failed)', fixable: false },\n      { name: 'Intelligence', status: 'fail', detail: 'Skipped (vault check failed)', fixable: false },\n      { name: 'Embeddings', status: 'fail', detail: 'Skipped (vault check failed)', fixable: false },\n      { name: 'Agents', status: 'fail', detail: 'Skipped (vault check failed)', fixable: false },\n      await checkDaemon(vaultDir),\n    );\n    return checks;\n  }\n\n  checks.push(await checkDatabase(vaultDir));\n  checks.push(await checkIntelligence(config));\n  checks.push(await checkEmbeddings(config));\n  checks.push(...await checkAgents(vaultDir, config));\n  checks.push(await checkDaemon(vaultDir));\n\n  return checks;\n}\n\n/** Auto-repair fixable issues. Returns descriptions of actions taken. */\nexport async function fix(vaultDir: string, checks: DoctorCheck[]): Promise<string[]> {\n  const actions: string[] = [];\n\n  for (const check of checks) {\n    if (!check.fixable || check.status === 'ok') continue;\n\n    // Fix stale daemon.json\n    if (check.name === 'Daemon' && check.detail.includes('Stale')) {\n      const daemonFile = path.join(vaultDir, DAEMON_STATE_FILENAME);\n      fs.unlinkSync(daemonFile);\n      actions.push('Removed stale daemon.json');\n    }\n\n    // Fix malformed daemon.json\n    if (check.name === 'Daemon' && check.detail.includes('parse error')) {\n      const daemonFile = path.join(vaultDir, DAEMON_STATE_FILENAME);\n      fs.unlinkSync(daemonFile);\n      actions.push('Removed malformed daemon.json');\n    }\n\n    // Advise on database issues\n    if (check.name === 'Database' && check.status === 'fail') {\n      actions.push('Run `myco init` to initialize the database');\n    }\n  }\n\n  return actions;\n}\n\n// --- Output formatting ---\n\n/** Status label width (visible characters). */\nconst STATUS_COL_WIDTH = 6;\n\nconst STATUS_LABELS: Record<DoctorCheck['status'], { text: string; color: string }> = {\n  ok: { text: 'ok', color: '\\x1b[32m' },\n  fail: { text: 'FAIL', color: '\\x1b[31m' },\n  warn: { text: '!!', color: '\\x1b[33m' },\n};\n\nfunction formatCheck(check: DoctorCheck): string {\n  const name = check.name ? check.name.padEnd(NAME_COL_WIDTH) : CONTINUATION_INDENT;\n  const { text, color } = STATUS_LABELS[check.status];\n  const paddedText = text.padEnd(STATUS_COL_WIDTH);\n  return `  ${name}${color}${paddedText}\\x1b[0m${check.detail}`;\n}\n\n// --- CLI entry point ---\n\nexport async function run(args: string[], vaultDir: string): Promise<void> {\n  const shouldFix = args.includes('--fix');\n\n  console.log('\\nmyco doctor\\n');\n\n  const checks = await runChecks(vaultDir);\n\n  for (const check of checks) {\n    console.log(formatCheck(check));\n  }\n\n  const issues = checks.filter(c => c.status !== 'ok');\n  const fixable = issues.filter(c => c.fixable);\n\n  console.log('');\n\n  if (issues.length === 0) {\n    console.log('  All checks passed.\\n');\n    return;\n  }\n\n  console.log(`  ${issues.length} issue(s) found.`);\n\n  if (shouldFix) {\n    const actions = await fix(vaultDir, checks);\n    if (actions.length > 0) {\n      console.log('');\n      for (const action of actions) {\n        console.log(`  Fixed: ${action}`);\n      }\n      console.log('');\n    } else {\n      console.log('  No auto-fixable issues.\\n');\n    }\n  } else if (fixable.length > 0) {\n    console.log(`  Run \\`myco doctor --fix\\` to repair ${fixable.length} fixable issue(s).\\n`);\n  } else {\n    console.log('');\n  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