npm - @goondocks/myco - Versions diffs - 0.19.0 → 0.19.2 - Mend

@goondocks/myco 0.19.0 → 0.19.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (151) hide show

package/dist/ui/index.html CHANGED Viewed

@@ -5,7 +5,7 @@
     <link rel="icon" type="image/svg+xml" href="/favicon.svg" />
     <meta name="viewport" content="width=device-width, initial-scale=1.0" />
     <title>Myco</title>
-    <script type="module" crossorigin src="/assets/index-CHIm98OP.js"></script>
+    <script type="module" crossorigin src="/assets/index-CwPuGRsJ.js"></script>
     <link rel="stylesheet" crossorigin href="/assets/index-CRmkSi63.css">
   </head>
   <body>

package/dist/{update-ZYCOWKMD.js → update-L5JXTKPL.js} RENAMED Viewed

@@ -2,22 +2,22 @@ import { createRequire as __cr } from 'node:module'; const require = __cr(import
 import {
   VAULT_GITIGNORE,
   registerSymbionts
-} from "./chunk-N77K772N.js";
+} from "./chunk-XMPCB2P2.js";
 import "./chunk-SAKJMNSR.js";
 import "./chunk-WYOE4IAX.js";
-import "./chunk-KSXTNYXO.js";
+import "./chunk-PMT2LSTQ.js";
 import {
   getEnabledSymbiontNames,
   loadConfig
-} from "./chunk-MDEUXYJG.js";
+} from "./chunk-3C4LT4BW.js";
 import "./chunk-MYX5NCRH.js";
 import {
   resolveVaultDir
 } from "./chunk-5ZT2Q6P5.js";
-import "./chunk-CYBC2HZ3.js";
+import "./chunk-QMTXVFA7.js";
 import {
   getPluginVersion
-} from "./chunk-2CKDAFSX.js";
+} from "./chunk-DDOPAV5O.js";
 import {
   loadManifests,
   resolvePackageRoot
@@ -25,8 +25,8 @@ import {
 import "./chunk-LPUQPDC2.js";
 import {
   UPDATE_STAMP_FILENAME
-} from "./chunk-W4VHC2ES.js";
-import "./chunk-E7NUADTQ.js";
+} from "./chunk-I54KLC6H.js";
+import "./chunk-UUHLLQXO.js";
 import "./chunk-6LQIMRTC.js";
 import "./chunk-ODXLRR4U.js";
 import "./chunk-U6PF3YII.js";
@@ -98,4 +98,4 @@ async function run(args) {
 export {
   run
 };
-//# sourceMappingURL=update-ZYCOWKMD.js.map
+//# sourceMappingURL=update-L5JXTKPL.js.map

package/dist/{user-prompt-submit-SOYL4OWF.js → user-prompt-submit-L6JNZ7QY.js} RENAMED Viewed

@@ -9,20 +9,20 @@ import {
 import {
   normalizeHookInput,
   readStdin
-} from "./chunk-MS6FDV45.js";
+} from "./chunk-WKNAKQKA.js";
 import {
   resolveVaultDir
 } from "./chunk-5ZT2Q6P5.js";
 import {
   DaemonClient
-} from "./chunk-CYBC2HZ3.js";
-import "./chunk-2CKDAFSX.js";
+} from "./chunk-QMTXVFA7.js";
+import "./chunk-DDOPAV5O.js";
 import {
   loadManifests
 } from "./chunk-UVKQ62II.js";
 import "./chunk-LPUQPDC2.js";
-import "./chunk-W4VHC2ES.js";
-import "./chunk-E7NUADTQ.js";
+import "./chunk-I54KLC6H.js";
+import "./chunk-UUHLLQXO.js";
 import "./chunk-6LQIMRTC.js";
 import "./chunk-ODXLRR4U.js";
 import "./chunk-U6PF3YII.js";
@@ -86,4 +86,4 @@ ${sessionLine}` : sessionLine;
 export {
   main
 };
-//# sourceMappingURL=user-prompt-submit-SOYL4OWF.js.map
+//# sourceMappingURL=user-prompt-submit-L6JNZ7QY.js.map

package/dist/{verify-P37PQ4YM.js → verify-CJHF23QH.js} RENAMED Viewed

@@ -1,13 +1,13 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   createEmbeddingProvider
-} from "./chunk-LLJMDXO2.js";
-import "./chunk-KSXTNYXO.js";
+} from "./chunk-3J6TUJSV.js";
+import "./chunk-PMT2LSTQ.js";
 import {
   loadConfig
-} from "./chunk-MDEUXYJG.js";
-import "./chunk-W4VHC2ES.js";
-import "./chunk-E7NUADTQ.js";
+} from "./chunk-3C4LT4BW.js";
+import "./chunk-I54KLC6H.js";
+import "./chunk-UUHLLQXO.js";
 import "./chunk-6LQIMRTC.js";
 import "./chunk-ODXLRR4U.js";
 import "./chunk-U6PF3YII.js";
@@ -39,4 +39,4 @@ async function run(_args, vaultDir) {
 export {
   run
 };
-//# sourceMappingURL=verify-P37PQ4YM.js.map
+//# sourceMappingURL=verify-CJHF23QH.js.map

package/dist/{version-XAWC277D.js → version-PFOYY6HT.js} RENAMED Viewed

@@ -1,10 +1,10 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   getPluginVersion
-} from "./chunk-2CKDAFSX.js";
+} from "./chunk-DDOPAV5O.js";
 import "./chunk-LPUQPDC2.js";
 import "./chunk-PZUWP5VK.js";
 export {
   getPluginVersion
 };
-//# sourceMappingURL=version-XAWC277D.js.map
+//# sourceMappingURL=version-PFOYY6HT.js.map

package/dist/version-PFOYY6HT.js.map ADDED Viewed

	@@ -0,0 +1 @@
1	+ {"version":3,"sources":[],"sourcesContent":[],"mappings":"","names":[]}

package/package.json CHANGED Viewed

@@ -1,6 +1,6 @@
 {
   "name": "@goondocks/myco",
-  "version": "0.19.0",
+  "version": "0.19.2",
   "description": "Collective agent intelligence — Claude Code plugin",
   "type": "module",
   "main": "dist/index.js",

package/dist/chunk-2DF4OZ2D.js.map DELETED Viewed

@@ -1 +0,0 @@

- {"version":3,"sources":["../src/db/queries/search.ts"],"sourcesContent":["/**\n * Full-text search using SQLite FTS5.\n *\n * Searches prompt_batches and activities via their FTS5 virtual tables.\n * Semantic search (vector similarity) is handled by the external VectorStore —\n * this module covers text-based retrieval only.\n *\n * All queries use parameterized placeholders throughout.\n */\n\nimport { getDatabase } from '@myco/db/client.js';\nimport {\n SEARCH_RESULTS_DEFAULT_LIMIT,\n SEARCH_PREVIEW_CHARS,\n} from '@myco/constants.js';\nimport type { VectorSearchResult } from '@myco/daemon/embedding/types.js';\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** All result types that can appear in search results. */\nexport type SearchResultType =\n | 'session'\n | 'spore'\n | 'plan'\n | 'artifact'\n | 'prompt_batch'\n | 'activity'\n | 'skill';\n\n/** A single result returned from full-text or semantic search. */\nexport interface SearchResult {\n id: string;\n type: SearchResultType;\n title: string;\n preview: string;\n score: number;\n session_id?: string;\n}\n\n/** Options for fullTextSearch. */\nexport interface SearchOptions {\n /** Restrict results to a single type. */\n type?: string;\n /** Maximum number of results to return (default: SEARCH_RESULTS_DEFAULT_LIMIT). */\n limit?: number;\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Full-text search across capture tables using SQLite FTS5.\n *\n * Searches prompt_batches (indexed on user_prompt) and activities (indexed\n * on tool_name, tool_input, file_path). The raw query string is passed\n * directly to FTS5 MATCH — callers should sanitize if needed.\n *\n * FTS5 `rank` values are negative (lower = better match). This function\n * converts them to positive scores via `Math.abs()` so higher = better\n * in the returned results.\n *\n * When `options.type` is specified, only the matching table branch is queried.\n *\n * @param query — search string (FTS5 MATCH syntax)\n * @param options — optional type filter and result limit\n * @returns SearchResult[] ordered by score DESC\n */\nexport function fullTextSearch(\n query: string,\n options: SearchOptions = {},\n): SearchResult[] {\n const db = getDatabase();\n const limit = options.limit ?? SEARCH_RESULTS_DEFAULT_LIMIT;\n const typeFilter = options.type;\n\n const results: SearchResult[] = [];\n\n // -- prompt_batches branch ------------------------------------------------\n if (typeFilter === undefined || typeFilter === 'prompt_batch') {\n const batchRows = db.prepare(\n `SELECT pb.id, pb.prompt_number, pb.session_id,\n substr(COALESCE(pb.user_prompt, '') || ' ' || COALESCE(pb.response_summary, ''), 1, ?) AS preview,\n fts.rank\n FROM prompt_batches_fts fts\n JOIN prompt_batches pb ON pb.id = fts.rowid\n WHERE prompt_batches_fts MATCH ?\n ORDER BY fts.rank\n LIMIT ?`\n ).all(SEARCH_PREVIEW_CHARS, query, limit) as Array<{\n id: number;\n prompt_number: number | null;\n session_id: string | null;\n preview: string;\n rank: number;\n }>;\n\n for (const row of batchRows) {\n results.push({\n id: String(row.id),\n type: 'prompt_batch',\n title: row.prompt_number != null\n ? `Batch #${row.prompt_number}`\n : `Batch ${row.id}`,\n preview: row.preview,\n score: Math.abs(row.rank),\n ...(row.session_id != null ? { session_id: row.session_id } : {}),\n });\n }\n }\n\n // -- activities branch ----------------------------------------------------\n if (typeFilter === undefined || typeFilter === 'activity') {\n const activityRows = db.prepare(\n `SELECT a.id, a.tool_name, a.tool_input, a.file_path, a.session_id,\n fts.rank\n FROM activities_fts fts\n JOIN activities a ON a.id = fts.rowid\n WHERE activities_fts MATCH ?\n ORDER BY fts.rank\n LIMIT ?`\n ).all(query, limit) as Array<{\n id: number;\n tool_name: string;\n tool_input: string | null;\n file_path: string | null;\n session_id: string | null;\n rank: number;\n }>;\n\n for (const row of activityRows) {\n const preview = (row.tool_input ?? row.file_path ?? '').slice(0, SEARCH_PREVIEW_CHARS);\n results.push({\n id: String(row.id),\n type: 'activity',\n title: row.tool_name,\n preview,\n score: Math.abs(row.rank),\n ...(row.session_id != null ? { session_id: row.session_id } : {}),\n });\n }\n }\n\n // -- spores branch --------------------------------------------------------\n if (typeFilter === undefined || typeFilter === 'spore') {\n const sporeRows = db.prepare(\n `SELECT s.id, s.observation_type, s.session_id,\n substr(COALESCE(s.content, ''), 1, ?) AS preview,\n fts.rank\n FROM spores_fts fts\n JOIN spores s ON s.rowid = fts.rowid\n WHERE spores_fts MATCH ?\n ORDER BY fts.rank\n LIMIT ?`\n ).all(SEARCH_PREVIEW_CHARS, query, limit) as Array<{\n id: string;\n observation_type: string;\n session_id: string | null;\n preview: string;\n rank: number;\n }>;\n\n for (const row of sporeRows) {\n results.push({\n id: String(row.id),\n type: 'spore',\n title: row.observation_type,\n preview: row.preview,\n score: Math.abs(row.rank),\n ...(row.session_id != null ? { session_id: row.session_id } : {}),\n });\n }\n }\n\n // -- sessions branch ------------------------------------------------------\n if (typeFilter === undefined || typeFilter === 'session') {\n const sessionRows = db.prepare(\n `SELECT s.id, s.title,\n substr(COALESCE(s.summary, s.title, ''), 1, ?) AS preview,\n fts.rank\n FROM sessions_fts fts\n JOIN sessions s ON s.rowid = fts.rowid\n WHERE sessions_fts MATCH ?\n ORDER BY fts.rank\n LIMIT ?`\n ).all(SEARCH_PREVIEW_CHARS, query, limit) as Array<{\n id: string;\n title: string | null;\n preview: string;\n rank: number;\n }>;\n\n for (const row of sessionRows) {\n results.push({\n id: String(row.id),\n type: 'session',\n title: row.title ?? `Session ${row.id.slice(-6)}`,\n preview: row.preview,\n score: Math.abs(row.rank),\n });\n }\n }\n\n // Sort combined results by score DESC and apply limit.\n results.sort((a, b) => b.score - a.score);\n return results.slice(0, limit);\n}\n\n// ---------------------------------------------------------------------------\n// Hydration — convert VectorSearchResults into SearchResults\n// ---------------------------------------------------------------------------\n\n/** Row shape returned from sessions table for hydration. */\ninterface SessionRow {\n id: string;\n title: string | null;\n summary: string | null;\n session_id?: undefined;\n}\n\n/** Row shape returned from spores table for hydration. */\ninterface SporeRow {\n id: string;\n observation_type: string;\n content: string;\n session_id: string | null;\n}\n\n/** Row shape returned from plans table for hydration. */\ninterface PlanRow {\n id: string;\n title: string | null;\n content: string | null;\n session_id: string | null;\n}\n\n/** Row shape returned from artifacts table for hydration. */\ninterface ArtifactRow {\n id: string;\n title: string;\n content: string | null;\n}\n\n/**\n * Hydrate vector search results into SearchResults by fetching full records\n * from the record store.\n *\n * Groups results by namespace, queries each table for the relevant IDs, then\n * maps them into SearchResult format with titles and previews.\n */\nexport function hydrateSearchResults(\n vectorResults: VectorSearchResult[],\n): SearchResult[] {\n if (vectorResults.length === 0) return [];\n\n const db = getDatabase();\n const results: SearchResult[] = [];\n\n // Group result IDs by namespace\n const byNamespace = new Map<string, VectorSearchResult[]>();\n for (const vr of vectorResults) {\n const group = byNamespace.get(vr.namespace) ?? [];\n group.push(vr);\n byNamespace.set(vr.namespace, group);\n }\n\n // Use json_each so the statement text is stable and SQLite can cache the plan.\n const sessionStmt = db.prepare(\n `SELECT id, title, summary FROM sessions WHERE id IN (SELECT value FROM json_each(?))`,\n );\n const sporeStmt = db.prepare(\n `SELECT id, observation_type, content, session_id FROM spores WHERE id IN (SELECT value FROM json_each(?))`,\n );\n const planStmt = db.prepare(\n `SELECT id, title, content, session_id FROM plans WHERE id IN (SELECT value FROM json_each(?))`,\n );\n const artifactStmt = db.prepare(\n `SELECT id, title, content FROM artifacts WHERE id IN (SELECT value FROM json_each(?))`,\n );\n const skillStmt = db.prepare(\n `SELECT id, name, display_name, description FROM skill_records WHERE id IN (SELECT value FROM json_each(?))`,\n );\n\n // --- sessions ---\n const sessionResults = byNamespace.get('sessions');\n if (sessionResults && sessionResults.length > 0) {\n const ids = sessionResults.map((r) => r.id);\n const rows = sessionStmt.all(JSON.stringify(ids)) as SessionRow[];\n\n const rowMap = new Map(rows.map((r) => [r.id, r]));\n for (const vr of sessionResults) {\n const row = rowMap.get(vr.id);\n if (!row) continue;\n results.push({\n id: row.id,\n type: 'session',\n title: row.title ?? `Session ${row.id.slice(-6)}`,\n preview: (row.summary ?? '').slice(0, SEARCH_PREVIEW_CHARS),\n score: vr.similarity,\n });\n }\n }\n\n // --- spores ---\n const sporeResults = byNamespace.get('spores');\n if (sporeResults && sporeResults.length > 0) {\n const ids = sporeResults.map((r) => r.id);\n const rows = sporeStmt.all(JSON.stringify(ids)) as SporeRow[];\n\n const rowMap = new Map(rows.map((r) => [r.id, r]));\n for (const vr of sporeResults) {\n const row = rowMap.get(vr.id);\n if (!row) continue;\n results.push({\n id: row.id,\n type: 'spore',\n title: row.observation_type,\n preview: row.content.slice(0, SEARCH_PREVIEW_CHARS),\n score: vr.similarity,\n ...(row.session_id != null ? { session_id: row.session_id } : {}),\n });\n }\n }\n\n // --- plans ---\n const planResults = byNamespace.get('plans');\n if (planResults && planResults.length > 0) {\n const ids = planResults.map((r) => r.id);\n const rows = planStmt.all(JSON.stringify(ids)) as PlanRow[];\n\n const rowMap = new Map(rows.map((r) => [r.id, r]));\n for (const vr of planResults) {\n const row = rowMap.get(vr.id);\n if (!row) continue;\n results.push({\n id: row.id,\n type: 'plan',\n title: row.title ?? `Plan ${row.id.slice(-6)}`,\n preview: (row.content ?? '').slice(0, SEARCH_PREVIEW_CHARS),\n score: vr.similarity,\n ...(row.session_id != null ? { session_id: row.session_id } : {}),\n });\n }\n }\n\n // --- artifacts ---\n const artifactResults = byNamespace.get('artifacts');\n if (artifactResults && artifactResults.length > 0) {\n const ids = artifactResults.map((r) => r.id);\n const rows = artifactStmt.all(JSON.stringify(ids)) as ArtifactRow[];\n\n const rowMap = new Map(rows.map((r) => [r.id, r]));\n for (const vr of artifactResults) {\n const row = rowMap.get(vr.id);\n if (!row) continue;\n results.push({\n id: row.id,\n type: 'artifact',\n title: row.title,\n preview: (row.content ?? '').slice(0, SEARCH_PREVIEW_CHARS),\n score: vr.similarity,\n });\n }\n }\n\n // --- skill_records ---\n const skillResults = byNamespace.get('skill_records');\n if (skillResults && skillResults.length > 0) {\n const ids = skillResults.map((r) => r.id);\n const rows = skillStmt.all(JSON.stringify(ids)) as Array<{ id: string; name: string; display_name: string; description: string }>;\n\n const rowMap = new Map(rows.map((r) => [r.id, r]));\n for (const vr of skillResults) {\n const row = rowMap.get(vr.id);\n if (!row) continue;\n results.push({\n id: row.id,\n type: 'skill',\n title: row.display_name || row.name,\n preview: row.description.slice(0, SEARCH_PREVIEW_CHARS),\n score: vr.similarity,\n });\n }\n }\n\n // Preserve the original similarity-based ordering from vector search\n results.sort((a, b) => b.score - a.score);\n return 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- {"version":3,"sources":["../src/db/queries/sessions.ts"],"sourcesContent":["/**\n * Session CRUD query helpers.\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport { getDatabase } from '@myco/db/client.js';\nimport { getTeamMachineId } from '@myco/daemon/team-context.js';\nimport { syncRow } from '@myco/db/queries/team-outbox.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Default number of sessions returned by listSessions when no limit given. */\nconst DEFAULT_LIST_LIMIT = 100;\n\n/** Session status value when a session is closed normally. */\nconst STATUS_COMPLETED = 'completed';\n\n/** Default session status for new sessions. */\nconst DEFAULT_STATUS = 'active';\n\n/** Default prompt count for new sessions. */\nconst DEFAULT_PROMPT_COUNT = 0;\n\n/** Default tool count for new sessions. */\nconst DEFAULT_TOOL_COUNT = 0;\n\n/** Default processed flag for new sessions. */\nconst DEFAULT_PROCESSED = 0;\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Fields required (or optional) when inserting/upserting a session. */\nexport interface SessionInsert {\n id: string;\n agent: string;\n started_at: number;\n created_at: number;\n user?: string | null;\n project_root?: string | null;\n branch?: string | null;\n ended_at?: number | null;\n status?: string;\n prompt_count?: number;\n tool_count?: number;\n title?: string | null;\n summary?: string | null;\n transcript_path?: string | null;\n parent_session_id?: string | null;\n parent_session_reason?: string | null;\n processed?: number;\n content_hash?: string | null;\n machine_id?: string;\n}\n\n/** Row shape returned from session queries (all columns). */\nexport interface SessionRow {\n id: string;\n agent: string;\n user: string | null;\n project_root: string | null;\n branch: string | null;\n started_at: number;\n ended_at: number | null;\n status: string;\n prompt_count: number;\n tool_count: number;\n title: string | null;\n summary: string | null;\n transcript_path: string | null;\n parent_session_id: string | null;\n parent_session_reason: string | null;\n processed: number;\n content_hash: string | null;\n embedded: number;\n created_at: number;\n machine_id: string;\n synced_at: number | null;\n}\n\n/** Updatable fields for `updateSession`. */\nexport interface SessionUpdate {\n agent?: string;\n user?: string | null;\n project_root?: string | null;\n branch?: string | null;\n ended_at?: number | null;\n status?: string;\n prompt_count?: number;\n tool_count?: number;\n title?: string | null;\n summary?: string | null;\n transcript_path?: string | null;\n parent_session_id?: string | null;\n parent_session_reason?: string | null;\n processed?: number;\n content_hash?: string | null;\n}\n\n/** Filter options for `listSessions`. */\nexport interface ListSessionsOptions {\n limit?: number;\n offset?: number;\n status?: string;\n agent?: string;\n search?: string;\n /** Only return sessions created after this epoch-seconds timestamp. */\n since?: number;\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst SESSION_COLUMNS = [\n 'id',\n 'agent',\n '\"user\"',\n 'project_root',\n 'branch',\n 'started_at',\n 'ended_at',\n 'status',\n 'prompt_count',\n 'tool_count',\n 'title',\n 'summary',\n 'transcript_path',\n 'parent_session_id',\n 'parent_session_reason',\n 'processed',\n 'content_hash',\n 'embedded',\n 'created_at',\n 'machine_id',\n 'synced_at',\n] as const;\n\nconst SELECT_COLUMNS = SESSION_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/**\n * Normalize a SQLite result row into a typed SessionRow.\n *\n * The quoted \"user\" column comes back as `user` in the result object.\n */\nfunction toSessionRow(row: Record<string, unknown>): SessionRow {\n return {\n id: row.id as string,\n agent: row.agent as string,\n user: (row.user as string) ?? 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DEFAULT_PROCESSED,\n data.content_hash ?? null,\n data.created_at,\n data.machine_id ?? getTeamMachineId(),\n data.prompt_count !== undefined ? 1 : 0,\n data.tool_count !== undefined ? 1 : 0,\n );\n\n const row = toSessionRow(\n db.prepare(`SELECT ${SELECT_COLUMNS} FROM sessions WHERE id = ?`).get(data.id) as Record<string, unknown>,\n );\n\n syncRow('sessions', row);\n\n return row;\n}\n\n/**\n * Retrieve a single session by id.\n *\n * @returns the session row, or null if not found.\n */\nexport function getSession(id: string): SessionRow | null {\n const db = getDatabase();\n\n const row = db.prepare(\n `SELECT ${SELECT_COLUMNS} FROM sessions WHERE id = ?`,\n ).get(id) as Record<string, unknown> | undefined;\n\n if (!row) return null;\n return toSessionRow(row);\n}\n\n/** Build WHERE clause and bound params from session filter options. */\nfunction buildSessionsWhere(\n options: Omit<ListSessionsOptions, 'limit' | 'offset'>,\n): { where: string; params: unknown[] } {\n const conditions: string[] = [];\n const params: unknown[] = [];\n\n if (options.status !== undefined) {\n conditions.push(`status = ?`);\n params.push(options.status);\n }\n\n if (options.agent !== undefined) {\n conditions.push(`agent = ?`);\n params.push(options.agent);\n }\n\n if (options.search !== undefined && options.search.length > 0) {\n conditions.push(`(title LIKE ? 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DEFAULT_LIST_LIMIT;\n const offset = options.offset ?? 0;\n\n const rows = db.prepare(\n `SELECT ${SELECT_COLUMNS}\n FROM sessions\n ${where}\n ORDER BY created_at DESC\n LIMIT ?\n OFFSET ?`,\n ).all(...params, limit, offset) as Record<string, unknown>[];\n\n return rows.map(toSessionRow);\n}\n\n/**\n * Count sessions matching optional filters (for pagination totals).\n */\nexport function countSessions(\n options: Omit<ListSessionsOptions, 'limit' | 'offset'> = {},\n): number {\n const db = getDatabase();\n const { where, params } = buildSessionsWhere(options);\n\n const row = db.prepare(\n `SELECT COUNT(*) as count FROM sessions ${where}`,\n ).get(...params) as { count: number };\n\n return row.count;\n}\n\n/**\n * Update specific fields on an existing session.\n *\n * @returns the updated row, or null if the session does not exist.\n */\nexport function updateSession(\n id: string,\n updates: SessionUpdate,\n): SessionRow | null {\n const db = getDatabase();\n\n const setClauses: string[] = [];\n const params: unknown[] = [];\n\n const fieldMap: Record<string, string> = {\n agent: 'agent',\n user: '\"user\"',\n project_root: 'project_root',\n branch: 'branch',\n ended_at: 'ended_at',\n status: 'status',\n prompt_count: 'prompt_count',\n tool_count: 'tool_count',\n title: 'title',\n summary: 'summary',\n transcript_path: 'transcript_path',\n parent_session_id: 'parent_session_id',\n parent_session_reason: 'parent_session_reason',\n processed: 'processed',\n content_hash: 'content_hash',\n };\n\n for (const [key, column] of Object.entries(fieldMap)) {\n if (key in updates) {\n setClauses.push(`${column} = ?`);\n params.push((updates as Record<string, unknown>)[key] ?? null);\n }\n }\n\n if (setClauses.length === 0) return getSession(id);\n\n params.push(id);\n\n db.prepare(\n `UPDATE sessions\n SET ${setClauses.join(', ')}\n WHERE id = ?`,\n ).run(...params);\n\n const updated = getSession(id);\n\n if (updated) syncRow('sessions', updated);\n\n return updated;\n}\n\n/**\n * Atomically increment tool_count for a session.\n *\n * Uses SQL `tool_count + 1` to avoid read-modify-write races.\n */\nexport function incrementSessionToolCount(id: string): void {\n const db = getDatabase();\n db.prepare(\n `UPDATE sessions SET tool_count = COALESCE(tool_count, 0) + 1 WHERE id = ?`,\n ).run(id);\n}\n\n/**\n * Close a session — set status to 'completed' and record the end time.\n *\n * @returns the updated row, or null if the session does not exist.\n */\nexport function closeSession(\n id: string,\n endedAt: number,\n): SessionRow | null {\n const db = getDatabase();\n\n db.prepare(\n `UPDATE sessions\n SET status = ?, ended_at = ?\n WHERE id = ?`,\n ).run(STATUS_COMPLETED, endedAt, id);\n\n const closed = getSession(id);\n\n if (closed) syncRow('sessions', closed);\n\n return closed;\n}\n\n/**\n * Delete a session and all its child rows (batches, activities, attachments).\n *\n * No ON DELETE CASCADE in the schema, so we delete children first.\n * Returns true if the session existed and was deleted.\n */\nexport function deleteSession(id: string): boolean {\n const db = getDatabase();\n\n db.prepare(`DELETE FROM activities WHERE session_id = ?`).run(id);\n db.prepare(`DELETE FROM attachments WHERE session_id = ?`).run(id);\n db.prepare(`DELETE FROM prompt_batches WHERE session_id = ?`).run(id);\n const info = db.prepare(`DELETE FROM sessions WHERE id = ?`).run(id);\n\n return info.changes > 0;\n}\n\n// ---------------------------------------------------------------------------\n// Cascade delete + impact query\n// ---------------------------------------------------------------------------\n\n/** Counts of related data that would be affected by a session delete. */\nexport interface SessionImpact {\n promptCount: number;\n sporeCount: number;\n attachmentCount: number;\n graphEdgeCount: number;\n}\n\n/** Result of a cascade delete operation. */\nexport interface DeleteCascadeResult {\n deleted: boolean;\n counts: {\n prompts: number;\n spores: number;\n attachments: number;\n graphEdges: number;\n resolutionEvents: number;\n };\n /** Spore IDs that were deleted (needed for vault file + vector cleanup). */\n deletedSporeIds: string[];\n /** Attachment file paths that were deleted from DB (needed for disk cleanup). */\n deletedAttachmentPaths: string[];\n}\n\n/**\n * Get counts of all data related to a session, for pre-delete impact display.\n */\nexport function getSessionImpact(sessionId: string): SessionImpact {\n const db = getDatabase();\n\n const row = db.prepare(\n `SELECT\n (SELECT COUNT(*) FROM prompt_batches WHERE session_id = ?) AS promptCount,\n (SELECT COUNT(*) FROM spores WHERE session_id = ?) AS sporeCount,\n (SELECT COUNT(*) FROM attachments WHERE session_id = ?) AS attachmentCount,\n (SELECT COUNT(*) FROM graph_edges WHERE session_id = ?) AS graphEdgeCount`,\n ).get(sessionId, sessionId, sessionId, sessionId) as SessionImpact;\n\n return row;\n}\n\n/**\n * Delete a session and ALL related data in a single transaction.\n *\n * Returns counts of deleted rows and IDs needed for post-transaction\n * cleanup (vault files, embedding vectors).\n */\nexport function deleteSessionCascade(sessionId: string): DeleteCascadeResult {\n const db = getDatabase();\n\n const zeroCounts: DeleteCascadeResult = {\n deleted: false,\n counts: { prompts: 0, spores: 0, attachments: 0, graphEdges: 0, resolutionEvents: 0 },\n deletedSporeIds: [],\n deletedAttachmentPaths: [],\n };\n\n // Check session exists first\n const exists = db.prepare(`SELECT id FROM sessions WHERE id = ?`).get(sessionId);\n if (!exists) return zeroCounts;\n\n // Collect IDs/paths needed for post-transaction cleanup before deleting.\n // Spores can reference prompt_batches from a different session (cross-session\n // spore linkage), so we must also collect spores linked via prompt_batch_id.\n const sporeIds = (db.prepare(\n `SELECT id FROM spores\n WHERE session_id = ?\n OR prompt_batch_id IN (SELECT id FROM prompt_batches WHERE session_id = ?)`,\n ).all(sessionId, sessionId) as { id: string }[]).map((r) => r.id);\n\n const attachmentPaths = (db.prepare(\n `SELECT file_path FROM attachments WHERE session_id = ?`,\n ).all(sessionId) as { file_path: string }[]).map((r) => r.file_path);\n\n // Run all deletes in a single transaction.\n //\n // Order matters — foreign_keys = ON is set in client.ts, so every DELETE\n // is checked immediately. Child rows must be removed before their parents:\n // - spores.prompt_batch_id → prompt_batches(id) [spores BEFORE prompt_batches]\n // - plans.prompt_batch_id → prompt_batches(id) [plans BEFORE prompt_batches]\n // - resolution_events.spore_id → spores(id) [resolution_events BEFORE spores]\n // - skill_usage.session_id → sessions(id) NOT NULL\n // - plans.session_id → sessions(id)\n // resolution_events can reference spores across sessions (e.g. a later\n // session supersedes an earlier session's spore), so we match by either\n // session_id OR spore_id-in-this-session to catch cross-session references.\n //\n // Spores can also reference prompt_batches from a different session\n // (cross-session prompt_batch_id linkage). We must delete those spores\n // BEFORE deleting prompt_batches to avoid FK violations.\n const result = db.transaction(() => {\n db.prepare(`DELETE FROM activities WHERE session_id = ?`).run(sessionId);\n const attachments = db.prepare(`DELETE FROM attachments WHERE session_id = ?`).run(sessionId);\n db.prepare(`DELETE FROM plans WHERE session_id = ?`).run(sessionId);\n db.prepare(`DELETE FROM skill_usage WHERE session_id = ?`).run(sessionId);\n const resEvents = db.prepare(\n `DELETE FROM resolution_events\n WHERE session_id = ?\n OR spore_id IN (\n SELECT id FROM spores\n WHERE session_id = ?\n OR prompt_batch_id IN (SELECT id FROM prompt_batches WHERE session_id = ?)\n )`,\n ).run(sessionId, sessionId, sessionId);\n const edges = db.prepare(`DELETE FROM graph_edges WHERE session_id = ?`).run(sessionId);\n const spores = db.prepare(\n `DELETE FROM spores\n WHERE session_id = ?\n OR prompt_batch_id IN (SELECT id FROM prompt_batches WHERE session_id = ?)`,\n ).run(sessionId, sessionId);\n const prompts = db.prepare(`DELETE FROM prompt_batches WHERE session_id = ?`).run(sessionId);\n const session = db.prepare(`DELETE FROM sessions WHERE id = ?`).run(sessionId);\n\n return {\n deleted: session.changes > 0,\n counts: {\n prompts: prompts.changes,\n spores: spores.changes,\n attachments: attachments.changes,\n graphEdges: edges.changes,\n resolutionEvents: resEvents.changes,\n },\n };\n })();\n\n return {\n ...result,\n deletedSporeIds: sporeIds,\n deletedAttachmentPaths: attachmentPaths,\n 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package/dist/chunk-EM63ZFKA.js DELETED Viewed

@@ -1,166 +0,0 @@
-import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
-// src/config/secrets.ts
-import fs from "fs";
-import path from "path";
-var SECRETS_FILE = "secrets.env";
-function readSecrets(vaultDir) {
-  const secretsPath = path.join(vaultDir, SECRETS_FILE);
-  if (!fs.existsSync(secretsPath)) return {};
-  const secrets = {};
-  for (const line of fs.readFileSync(secretsPath, "utf-8").split("\n")) {
-    const match = line.match(/^\s*([^#=]+?)\s*=\s*(.*?)\s*$/);
-    if (match) {
-      secrets[match[1]] = match[2];
-    }
-  }
-  return secrets;
-}
-function writeSecret(vaultDir, key, value) {
-  const secretsPath = path.join(vaultDir, SECRETS_FILE);
-  const existing = readSecrets(vaultDir);
-  existing[key] = value;
-  const content = Object.entries(existing).map(([k, v]) => `${k}=${v}`).join("\n") + "\n";
-  fs.writeFileSync(secretsPath, content, "utf-8");
-}
-function loadSecrets(vaultDir) {
-  const secrets = readSecrets(vaultDir);
-  for (const [key, value] of Object.entries(secrets)) {
-    if (!process.env[key]) {
-      process.env[key] = value;
-    }
-  }
-}
-// ../myco-deploy/src/cloudflare.ts
-import { execFileSync } from "child_process";
-import fs2 from "fs";
-import path2 from "path";
-var WORKER_URL_REGEX = /(https:\/\/[^\s]+\.workers\.dev)/;
-var D1_ID_JSON_REGEX = /"database_id"\s*:\s*"([0-9a-f-]{36})"/i;
-var D1_ID_TEXT_REGEX = /id:\s*([0-9a-f-]{36})/i;
-var KV_ID_REGEX = /"id":\s*"([0-9a-f]+)"/i;
-function buildCommandEnv() {
-  const nodeBinDir = path2.dirname(process.execPath);
-  const pathValue = process.env.PATH ? `${nodeBinDir}${path2.delimiter}${process.env.PATH}` : nodeBinDir;
-  return { ...process.env, PATH: pathValue };
-}
-function runWrangler(args, options) {
-  try {
-    return execFileSync("wrangler", args, {
-      cwd: options.cwd,
-      env: buildCommandEnv(),
-      input: options.input,
-      encoding: "utf-8",
-      timeout: options.timeoutMs,
-      stdio: ["pipe", "pipe", "pipe"]
-    });
-  } catch (error) {
-    const execError = error;
-    const stderr = execError.stderr?.toString() ?? "";
-    const stdout = execError.stdout?.toString() ?? "";
-    const detail = [stderr, stdout].filter(Boolean).join("\n").trim();
-    throw new Error(detail || execError.message);
-  }
-}
-function installDeploymentDeps(deployDir, timeoutMs) {
-  const packageJsonPath = path2.join(deployDir, "package.json");
-  if (!fs2.existsSync(packageJsonPath)) return;
-  execFileSync("npm", ["install", "--silent", "--no-audit", "--no-fund"], {
-    cwd: deployDir,
-    env: buildCommandEnv(),
-    encoding: "utf-8",
-    timeout: timeoutMs,
-    stdio: ["pipe", "pipe", "pipe"]
-  });
-}
-function parseWorkerUrl(output) {
-  const workerUrl = output.match(WORKER_URL_REGEX)?.[1];
-  if (!workerUrl) {
-    throw new Error(`Could not parse worker URL from deploy output:
-${output}`);
-  }
-  return workerUrl;
-}
-function parseD1Id(output) {
-  const jsonMatch = output.match(D1_ID_JSON_REGEX);
-  if (jsonMatch) return jsonMatch[1];
-  const textMatch = output.match(D1_ID_TEXT_REGEX);
-  if (textMatch) return textMatch[1];
-  throw new Error(`Could not parse D1 database ID from wrangler output:
-${output}`);
-}
-function parseKvNamespaceId(output) {
-  const kvId = output.match(KV_ID_REGEX)?.[1];
-  if (!kvId) {
-    throw new Error(`Could not parse KV namespace ID from wrangler output:
-${output}`);
-  }
-  return kvId;
-}
-function extractJsonArray(output) {
-  const start = output.indexOf("[");
-  const end = output.lastIndexOf("]");
-  if (start === -1 || end === -1 || end < start) {
-    throw new Error(`No JSON array found in output:
-${output}`);
-  }
-  return JSON.parse(output.slice(start, end + 1));
-}
-function stageDeploymentDir(options) {
-  if (options.reset) {
-    fs2.rmSync(options.deployDir, { recursive: true, force: true });
-  }
-  fs2.mkdirSync(options.deployDir, { recursive: true });
-  fs2.cpSync(options.sourceDir, options.deployDir, { recursive: true });
-  for (const copy of options.extraCopies ?? []) {
-    fs2.cpSync(copy.sourceDir, path2.join(options.deployDir, copy.destinationSubdir), { recursive: true });
-  }
-  for (const patch of options.textPatches ?? []) {
-    const absolutePath = path2.join(options.deployDir, patch.filePath);
-    let nextText = fs2.readFileSync(absolutePath, "utf-8");
-    for (const transform of patch.transforms) {
-      nextText = transform(nextText);
-    }
-    fs2.writeFileSync(absolutePath, nextText, "utf-8");
-  }
-  if (options.installDepsTimeoutMs) {
-    installDeploymentDeps(options.deployDir, options.installDepsTimeoutMs);
-  }
-  return options.deployDir;
-}
-// ../myco-deploy/src/local-config.ts
-import crypto from "crypto";
-import fs3 from "fs";
-import os from "os";
-import path3 from "path";
-function resolveHomeConfigPath(configDir, fileName) {
-  return path3.join(os.homedir(), configDir, fileName);
-}
-function readJsonConfig(configPath) {
-  if (!fs3.existsSync(configPath)) return null;
-  return JSON.parse(fs3.readFileSync(configPath, "utf-8"));
-}
-function writeJsonConfig(configPath, value) {
-  fs3.mkdirSync(path3.dirname(configPath), { recursive: true });
-  fs3.writeFileSync(configPath, `${JSON.stringify(value, null, 2)}
-`, { encoding: "utf-8", mode: 384 });
-  fs3.chmodSync(configPath, 384);
-}
-export {
-  readSecrets,
-  writeSecret,
-  loadSecrets,
-  runWrangler,
-  parseWorkerUrl,
-  parseD1Id,
-  parseKvNamespaceId,
-  extractJsonArray,
-  stageDeploymentDir,
-  resolveHomeConfigPath,
-  readJsonConfig,
-  writeJsonConfig
-};
-//# sourceMappingURL=chunk-EM63ZFKA.js.map

package/dist/chunk-EM63ZFKA.js.map DELETED Viewed

@@ -1 +0,0 @@

- {"version":3,"sources":["../src/config/secrets.ts","../../myco-deploy/src/cloudflare.ts","../../myco-deploy/src/local-config.ts"],"sourcesContent":["/**\n * Secrets file utilities for API key storage outside git.\n *\n * Secrets are stored in `secrets.env` inside the vault directory.\n * This file is gitignored (see VAULT_GITIGNORE) and never committed.\n * Format: KEY=value, one per line (same as .env).\n */\nimport fs from 'node:fs';\nimport path from 'node:path';\n\nconst SECRETS_FILE = 'secrets.env';\n\n/** Read all secrets from <vault>/secrets.env as key-value pairs. */\nexport function readSecrets(vaultDir: string): Record<string, string> {\n const secretsPath = path.join(vaultDir, SECRETS_FILE);\n if (!fs.existsSync(secretsPath)) return {};\n\n const secrets: Record<string, string> = {};\n for (const line of fs.readFileSync(secretsPath, 'utf-8').split('\\n')) {\n const match = line.match(/^\\s*([^#=]+?)\\s*=\\s*(.*?)\\s*$/);\n if (match) {\n secrets[match[1]] = match[2];\n }\n }\n return secrets;\n}\n\n/** Write a secret to <vault>/secrets.env, preserving existing entries. */\nexport function writeSecret(vaultDir: string, key: string, value: string): void {\n const secretsPath = path.join(vaultDir, SECRETS_FILE);\n const existing = readSecrets(vaultDir);\n existing[key] = value;\n\n const content = Object.entries(existing)\n .map(([k, v]) => `${k}=${v}`)\n .join('\\n') + '\\n';\n\n fs.writeFileSync(secretsPath, content, 'utf-8');\n}\n\n/** Load secrets from <vault>/secrets.env into process.env (without overwriting existing vars). */\nexport function loadSecrets(vaultDir: string): void {\n const secrets = readSecrets(vaultDir);\n for (const [key, value] of Object.entries(secrets)) {\n if (!process.env[key]) {\n process.env[key] = value;\n }\n }\n}\n","import { execFileSync } from 'node:child_process';\nimport fs from 'node:fs';\nimport path from 'node:path';\n\nconst WORKER_URL_REGEX = /(https:\\/\\/[^\\s]+\\.workers\\.dev)/;\nconst D1_ID_JSON_REGEX = /\"database_id\"\\s*:\\s*\"([0-9a-f-]{36})\"/i;\nconst D1_ID_TEXT_REGEX = /id:\\s*([0-9a-f-]{36})/i;\nconst KV_ID_REGEX = /\"id\":\\s*\"([0-9a-f]+)\"/i;\n\nexport interface WranglerOptions {\n cwd?: string;\n input?: string;\n timeoutMs: number;\n}\n\nexport interface TextPatch {\n filePath: string;\n transforms: Array<(text: string) => string>;\n}\n\nexport interface StageDeploymentDirOptions {\n sourceDir: string;\n deployDir: string;\n reset?: boolean;\n extraCopies?: Array<{ sourceDir: string; destinationSubdir: string }>;\n textPatches?: TextPatch[];\n installDepsTimeoutMs?: number | null;\n}\n\nexport function buildCommandEnv(): NodeJS.ProcessEnv {\n const nodeBinDir = path.dirname(process.execPath);\n const pathValue = process.env.PATH\n ? `${nodeBinDir}${path.delimiter}${process.env.PATH}`\n : nodeBinDir;\n return { ...process.env, PATH: pathValue };\n}\n\nexport function runWrangler(args: string[], options: WranglerOptions): string {\n try {\n return execFileSync('wrangler', args, {\n cwd: options.cwd,\n env: buildCommandEnv(),\n input: options.input,\n encoding: 'utf-8',\n timeout: options.timeoutMs,\n stdio: ['pipe', 'pipe', 'pipe'],\n });\n } catch (error) {\n const execError = error as Error & { stderr?: Buffer | string; stdout?: Buffer | string };\n const stderr = execError.stderr?.toString() ?? '';\n const stdout = execError.stdout?.toString() ?? '';\n const detail = [stderr, stdout].filter(Boolean).join('\\n').trim();\n throw new Error(detail || execError.message);\n }\n}\n\nexport function installDeploymentDeps(deployDir: string, timeoutMs: number): void {\n const packageJsonPath = path.join(deployDir, 'package.json');\n if (!fs.existsSync(packageJsonPath)) return;\n\n execFileSync('npm', ['install', '--silent', '--no-audit', '--no-fund'], {\n cwd: deployDir,\n env: buildCommandEnv(),\n encoding: 'utf-8',\n timeout: timeoutMs,\n stdio: ['pipe', 'pipe', 'pipe'],\n });\n}\n\nexport function parseWorkerUrl(output: string): string {\n const workerUrl = output.match(WORKER_URL_REGEX)?.[1];\n if (!workerUrl) {\n throw new Error(`Could not parse worker URL from deploy output:\\n${output}`);\n }\n return workerUrl;\n}\n\nexport function parseD1Id(output: string): string {\n const jsonMatch = output.match(D1_ID_JSON_REGEX);\n if (jsonMatch) return jsonMatch[1];\n\n const textMatch = output.match(D1_ID_TEXT_REGEX);\n if (textMatch) return textMatch[1];\n\n throw new Error(`Could not parse D1 database ID from wrangler output:\\n${output}`);\n}\n\nexport function parseKvNamespaceId(output: string): string {\n const kvId = output.match(KV_ID_REGEX)?.[1];\n if (!kvId) {\n throw new Error(`Could not parse KV namespace ID from wrangler output:\\n${output}`);\n }\n return kvId;\n}\n\nexport function extractJsonArray(output: string): unknown[] {\n const start = output.indexOf('[');\n const end = output.lastIndexOf(']');\n if (start === -1 || end === -1 || end < start) {\n throw new Error(`No JSON array found in output:\\n${output}`);\n }\n return JSON.parse(output.slice(start, end + 1)) as unknown[];\n}\n\nexport function stageDeploymentDir(options: StageDeploymentDirOptions): string {\n if (options.reset) {\n fs.rmSync(options.deployDir, { recursive: true, force: true });\n }\n fs.mkdirSync(options.deployDir, { recursive: true });\n fs.cpSync(options.sourceDir, options.deployDir, { recursive: true });\n\n for (const copy of options.extraCopies ?? []) {\n fs.cpSync(copy.sourceDir, path.join(options.deployDir, copy.destinationSubdir), { recursive: true });\n }\n\n for (const patch of options.textPatches ?? []) {\n const absolutePath = path.join(options.deployDir, patch.filePath);\n let nextText = fs.readFileSync(absolutePath, 'utf-8');\n for (const transform of patch.transforms) {\n nextText = transform(nextText);\n }\n fs.writeFileSync(absolutePath, nextText, 'utf-8');\n }\n\n if (options.installDepsTimeoutMs) {\n installDeploymentDeps(options.deployDir, options.installDepsTimeoutMs);\n }\n\n return options.deployDir;\n}\n","import crypto from 'node:crypto';\nimport fs from 'node:fs';\nimport os from 'node:os';\nimport path from 'node:path';\n\nexport function resolveHomeConfigPath(configDir: string, fileName: string): string {\n return path.join(os.homedir(), configDir, fileName);\n}\n\nexport function readJsonConfig<T>(configPath: string): T | null {\n if (!fs.existsSync(configPath)) return null;\n return JSON.parse(fs.readFileSync(configPath, 'utf-8')) as T;\n}\n\nexport function writeJsonConfig(configPath: string, value: unknown): void {\n fs.mkdirSync(path.dirname(configPath), { 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package/dist/chunk-MDEUXYJG.js.map DELETED Viewed

@@ -1 +0,0 @@

- {"version":3,"sources":["../src/config/loader.ts","../src/config/schema.ts","../src/config/migrations.ts"],"sourcesContent":["import fs from 'node:fs';\nimport path from 'node:path';\nimport YAML from 'yaml';\nimport { MycoConfigSchema, type MycoConfig, type BackupConfig, type TeamConfig } from './schema.js';\nimport { runMigrations, CURRENT_MIGRATION_VERSION } from './migrations.js';\n\nexport const CONFIG_FILENAME = 'myco.yaml';\n\nexport function loadConfig(vaultDir: string): MycoConfig {\n const configPath = path.join(vaultDir, CONFIG_FILENAME);\n\n if (!fs.existsSync(configPath)) {\n throw new Error(`myco.yaml not found in ${vaultDir}`);\n }\n\n const raw = fs.readFileSync(configPath, 'utf-8');\n const parsed = YAML.parse(raw) as Record<string, unknown>;\n\n // Detect v1 config and guide migration\n if (parsed.version === 1 || (parsed.intelligence as Record<string, unknown>)?.backend) {\n throw new Error(\n 'Myco config uses v1 format. Run /myco:setup-llm to reconfigure for v2.',\n );\n }\n\n // --- v2 → v3 migration ---\n let v2Migrated = false;\n if (parsed.version === 2) {\n // Extract intelligence.embedding to top-level embedding\n const intel = parsed.intelligence as Record<string, unknown> | undefined;\n const embeddingConfig = intel?.embedding as Record<string, unknown> | undefined;\n if (embeddingConfig && !parsed.embedding) {\n // Map v2 'lm-studio' to v3 'openai-compatible' for embedding provider\n if (embeddingConfig.provider === 'lm-studio') {\n embeddingConfig.provider = 'openai-compatible';\n }\n parsed.embedding = embeddingConfig;\n }\n\n // Keep daemon.port and daemon.log_level, drop grace_period and max_log_size\n const daemon = parsed.daemon as Record<string, unknown> | undefined;\n if (daemon) {\n const { port, log_level } = daemon;\n parsed.daemon = { port: port ?? null, log_level: log_level ?? 'info' };\n }\n\n // Keep capture basics, drop token-related fields; migrate artifact_watch → plan_dirs\n const capture = parsed.capture as Record<string, unknown> | undefined;\n if (capture) {\n const { transcript_paths, artifact_watch, plan_dirs, artifact_extensions, buffer_max_events } = capture;\n parsed.capture = {\n transcript_paths,\n plan_dirs: plan_dirs ?? artifact_watch,\n artifact_extensions,\n buffer_max_events,\n };\n }\n\n // Drop removed top-level sections\n delete parsed.intelligence;\n delete parsed.context;\n delete parsed.team;\n delete parsed.digest;\n delete parsed.pipeline;\n\n // Set version to 3\n parsed.version = 3;\n v2Migrated = true;\n\n process.stderr.write('[myco migration] Migrated config from v2 to v3\\n');\n }\n\n // Run numbered migrations (for v3+ forward migrations)\n const migrationsRan = runMigrations(parsed, vaultDir, (msg) => {\n process.stderr.write(`[myco migration] ${msg}\\n`);\n });\n\n // Parse with Zod to fill in defaults for new config sections\n const config = MycoConfigSchema.parse(parsed);\n\n // Write back if v2→v3 migration ran, numbered migrations ran, or new defaults were added\n const needsWrite = v2Migrated\n || migrationsRan\n || (parsed.config_version as number ?? 0) < CURRENT_MIGRATION_VERSION\n || parsed.version !== config.version;\n\n if (needsWrite) {\n const fullConfig = JSON.parse(JSON.stringify(config)) as Record<string, unknown>;\n fs.writeFileSync(configPath, YAML.stringify(fullConfig), 'utf-8');\n }\n\n return config;\n}\n\nexport function saveConfig(vaultDir: string, config: MycoConfig): void {\n // Validate before writing — OAK lesson: validate on write, not just read\n const validated = MycoConfigSchema.parse(config);\n\n const configPath = path.join(vaultDir, CONFIG_FILENAME);\n fs.mkdirSync(vaultDir, { recursive: true });\n fs.writeFileSync(configPath, YAML.stringify(validated), 'utf-8');\n}\n\nexport function updateConfig(\n vaultDir: string,\n fn: (config: MycoConfig) => MycoConfig,\n): 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...config.team, ...team },\n }));\n}\n","import { z } from 'zod';\nimport { SCHEDULABLE_POWER_STATES } from '@myco/constants.js';\n\nconst EmbeddingProviderSchema = z.object({\n provider: z.enum(['ollama', 'openai-compatible', 'openrouter', 'openai']).default('ollama'),\n model: z.string().default('bge-m3'),\n base_url: z.string().url().optional(),\n});\n\nconst DaemonSchema = z.object({\n port: z.number().int().min(1024).max(65535).nullable().default(null),\n log_level: z.enum(['debug', 'info', 'warn', 'error']).default('info'),\n log_retention_days: z.number().int().min(1).max(365).default(30),\n});\n\nconst CaptureSchema = z.object({\n transcript_paths: z.array(z.string()).default([]),\n plan_dirs: z.array(z.string()).default([]),\n artifact_extensions: z.array(z.string()).default(['.md']),\n buffer_max_events: z.number().int().positive().default(500),\n});\n\n/** Provider config shape used in both task-level and phase-level overrides. */\nconst ProviderOverrideSchema = z.object({\n 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- {"version":3,"sources":["../src/cli/shared.ts"],"sourcesContent":["import fs from 'node:fs';\nimport path from 'node:path';\nimport os from 'node:os';\nimport { OllamaBackend } from '../intelligence/ollama.js';\nimport { LmStudioBackend } from '../intelligence/lm-studio.js';\n\nimport { DaemonClient } from '../hooks/client.js';\nimport { initDatabase, closeDatabase, vaultDbPath } from '../db/client.js';\nimport { SymbiontInstaller } from '../symbionts/installer.js';\nimport type { SymbiontManifest } from '../symbionts/manifest-schema.js';\n\nexport { parseStringFlag, parseIntFlag } from '../logs/format.js';\n\n/**\n * Initialize the singleton database for direct CLI reads.\n * Used by CLI commands that only need reads (stats, search, session).\n * Does NOT require the daemon to be running — WAL mode allows concurrent reads.\n *\n * @returns a cleanup function that closes the database.\n */\nexport function initVaultDb(vaultDir: string): () => void {\n initDatabase(vaultDbPath(vaultDir));\n return closeDatabase;\n}\n\n/** Connect to the daemon, ensuring it's running. 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- {"version":3,"sources":["../src/db/queries/spores.ts"],"sourcesContent":["/**\n * Spore CRUD query helpers.\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport { getDatabase } from '@myco/db/client.js';\nimport { getTeamMachineId } from '@myco/daemon/team-context.js';\nimport { syncRow } from '@myco/db/queries/team-outbox.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Default number of spores returned by listSpores when no limit given. */\nconst DEFAULT_LIST_LIMIT = 100;\n\n/** Default spore status for new spores. */\nconst DEFAULT_STATUS = 'active';\n\n/** Default importance score for new spores. */\nexport const DEFAULT_IMPORTANCE = 5;\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Fields required (or optional) when inserting a spore. */\nexport interface SporeInsert {\n id: string;\n agent_id: string;\n observation_type: string;\n content: string;\n created_at: number;\n session_id?: string | null;\n prompt_batch_id?: number | null;\n status?: string;\n context?: string | null;\n importance?: number;\n file_path?: string | null;\n tags?: string | null;\n content_hash?: string | null;\n properties?: string | null;\n updated_at?: number | null;\n machine_id?: string;\n}\n\n/** Row shape returned from spore queries (all columns). */\nexport interface SporeRow {\n id: string;\n agent_id: string;\n session_id: string | null;\n prompt_batch_id: number | null;\n observation_type: string;\n status: string;\n content: string;\n context: string | null;\n importance: number;\n file_path: string | null;\n tags: string | null;\n content_hash: string | null;\n properties: string | null;\n embedded: number;\n created_at: number;\n updated_at: number | null;\n machine_id: string;\n synced_at: number | null;\n}\n\n/** Filter options for `listSpores`. */\nexport interface ListSporesOptions {\n agent_id?: string;\n observation_type?: string;\n status?: string;\n session_id?: string;\n search?: string;\n /** Only return spores created after this epoch-seconds timestamp. */\n since?: number;\n limit?: number;\n offset?: number;\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst SPORE_COLUMNS = [\n 'id',\n 'agent_id',\n 'session_id',\n 'prompt_batch_id',\n 'observation_type',\n 'status',\n 'content',\n 'context',\n 'importance',\n 'file_path',\n 'tags',\n 'content_hash',\n 'properties',\n 'embedded',\n 'created_at',\n 'updated_at',\n 'machine_id',\n 'synced_at',\n] as const;\n\nconst SELECT_COLUMNS = SPORE_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Normalize a SQLite result row into a typed SporeRow. */\nfunction toSporeRow(row: Record<string, unknown>): SporeRow {\n return {\n id: row.id as string,\n agent_id: row.agent_id as string,\n session_id: (row.session_id as string) ?? null,\n prompt_batch_id: (row.prompt_batch_id as number) ?? null,\n observation_type: row.observation_type as string,\n status: row.status as string,\n content: row.content as string,\n context: (row.context as string) ?? null,\n importance: row.importance as number,\n file_path: (row.file_path as string) ?? null,\n tags: (row.tags as string) ?? null,\n content_hash: (row.content_hash as string) ?? null,\n properties: (row.properties as string) ?? null,\n embedded: (row.embedded as number) ?? 0,\n created_at: row.created_at as number,\n updated_at: (row.updated_at as number) ?? null,\n machine_id: (row.machine_id as string) ?? 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