@goondocks/myco 0.18.0 → 0.18.1

package/dist/{chunk-55QEICRO.js → chunk-TLK46KKD.js}

@@ -13,7 +13,7 @@ import {
 } from "./chunk-MYX5NCRH.js";
 import {
   DaemonClient
-} from "./chunk-BUIR3JWM.js";
+} from "./chunk-XWOQL4XN.js";
 
 // src/cli/shared.ts
 import fs from "fs";
@@ -120,4 +120,4 @@ export {
   VAULT_GITIGNORE,
   registerSymbionts
 };
-//# sourceMappingURL=chunk-55QEICRO.js.map
+//# sourceMappingURL=chunk-TLK46KKD.js.map

package/dist/{chunk-NZI7WBZI.js → chunk-TOER6RNC.js}

@@ -125,6 +125,9 @@ function hydrateSearchResults(vectorResults) {
   const artifactStmt = db.prepare(
     `SELECT id, title, content FROM artifacts WHERE id IN (SELECT value FROM json_each(?))`
   );
+  const skillStmt = db.prepare(
+    `SELECT id, name, display_name, description FROM skill_records WHERE id IN (SELECT value FROM json_each(?))`
+  );
   const sessionResults = byNamespace.get("sessions");
   if (sessionResults && sessionResults.length > 0) {
     const ids = sessionResults.map((r) => r.id);
@@ -195,6 +198,23 @@ function hydrateSearchResults(vectorResults) {
       });
     }
   }
+  const skillResults = byNamespace.get("skill_records");
+  if (skillResults && skillResults.length > 0) {
+    const ids = skillResults.map((r) => r.id);
+    const rows = skillStmt.all(JSON.stringify(ids));
+    const rowMap = new Map(rows.map((r) => [r.id, r]));
+    for (const vr of skillResults) {
+      const row = rowMap.get(vr.id);
+      if (!row) continue;
+      results.push({
+        id: row.id,
+        type: "skill",
+        title: row.display_name || row.name,
+        preview: row.description.slice(0, SEARCH_PREVIEW_CHARS),
+        score: vr.similarity
+      });
+    }
+  }
   results.sort((a, b) => b.score - a.score);
   return results;
 }
@@ -203,4 +223,4 @@ export {
   fullTextSearch,
   hydrateSearchResults
 };
-//# sourceMappingURL=chunk-NZI7WBZI.js.map
+//# sourceMappingURL=chunk-TOER6RNC.js.map

package/dist/chunk-TOER6RNC.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/db/queries/search.ts"],"sourcesContent":["/**\n * Full-text search using SQLite FTS5.\n *\n * Searches prompt_batches and activities via their FTS5 virtual tables.\n * Semantic search (vector similarity) is handled by the external VectorStore —\n * this module covers text-based retrieval only.\n *\n * All queries use parameterized placeholders throughout.\n */\n\nimport { getDatabase } from '@myco/db/client.js';\nimport {\n  SEARCH_RESULTS_DEFAULT_LIMIT,\n  SEARCH_PREVIEW_CHARS,\n} from '@myco/constants.js';\nimport type { VectorSearchResult } from '@myco/daemon/embedding/types.js';\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** All result types that can appear in search results. */\nexport type SearchResultType =\n  | 'session'\n  | 'spore'\n  | 'plan'\n  | 'artifact'\n  | 'prompt_batch'\n  | 'activity'\n  | 'skill';\n\n/** A single result returned from full-text or semantic search. */\nexport interface SearchResult {\n  id: string;\n  type: SearchResultType;\n  title: string;\n  preview: string;\n  score: number;\n  session_id?: string;\n}\n\n/** Options for fullTextSearch. */\nexport interface SearchOptions {\n  /** Restrict results to a single type. */\n  type?: string;\n  /** Maximum number of results to return (default: SEARCH_RESULTS_DEFAULT_LIMIT). */\n  limit?: number;\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Full-text search across capture tables using SQLite FTS5.\n *\n * Searches prompt_batches (indexed on user_prompt) and activities (indexed\n * on tool_name, tool_input, file_path). The raw query string is passed\n * directly to FTS5 MATCH — callers should sanitize if needed.\n *\n * FTS5 `rank` values are negative (lower = better match). This function\n * converts them to positive scores via `Math.abs()` so higher = better\n * in the returned results.\n *\n * When `options.type` is specified, only the matching table branch is queried.\n *\n * @param query — search string (FTS5 MATCH syntax)\n * @param options — optional type filter and result limit\n * @returns SearchResult[] ordered by score DESC\n */\nexport function fullTextSearch(\n  query: string,\n  options: SearchOptions = {},\n): SearchResult[] {\n  const db = getDatabase();\n  const limit = options.limit ?? SEARCH_RESULTS_DEFAULT_LIMIT;\n  const typeFilter = options.type;\n\n  const results: SearchResult[] = [];\n\n  // -- prompt_batches branch ------------------------------------------------\n  if (typeFilter === undefined || typeFilter === 'prompt_batch') {\n    const batchRows = db.prepare(\n      `SELECT pb.id, pb.prompt_number, pb.session_id,\n              substr(COALESCE(pb.user_prompt, '') || ' ' || COALESCE(pb.response_summary, ''), 1, ?) AS preview,\n              fts.rank\n       FROM prompt_batches_fts fts\n       JOIN prompt_batches pb ON pb.id = fts.rowid\n       WHERE prompt_batches_fts MATCH ?\n       ORDER BY fts.rank\n       LIMIT ?`\n    ).all(SEARCH_PREVIEW_CHARS, query, limit) as Array<{\n      id: number;\n      prompt_number: number | null;\n      session_id: string | null;\n      preview: string;\n      rank: number;\n    }>;\n\n    for (const row of batchRows) {\n      results.push({\n        id: String(row.id),\n        type: 'prompt_batch',\n        title: row.prompt_number != null\n          ? `Batch #${row.prompt_number}`\n          : `Batch ${row.id}`,\n        preview: row.preview,\n        score: Math.abs(row.rank),\n        ...(row.session_id != null ? { session_id: row.session_id } : {}),\n      });\n    }\n  }\n\n  // -- activities branch ----------------------------------------------------\n  if (typeFilter === undefined || typeFilter === 'activity') {\n    const activityRows = db.prepare(\n      `SELECT a.id, a.tool_name, a.tool_input, a.file_path, a.session_id,\n              fts.rank\n       FROM activities_fts fts\n       JOIN activities a ON a.id = fts.rowid\n       WHERE activities_fts MATCH ?\n       ORDER BY fts.rank\n       LIMIT ?`\n    ).all(query, limit) as Array<{\n      id: number;\n      tool_name: string;\n      tool_input: string | null;\n      file_path: string | null;\n      session_id: string | null;\n      rank: number;\n    }>;\n\n    for (const row of activityRows) {\n      const preview = (row.tool_input ?? row.file_path ?? '').slice(0, SEARCH_PREVIEW_CHARS);\n      results.push({\n        id: String(row.id),\n        type: 'activity',\n        title: row.tool_name,\n        preview,\n        score: Math.abs(row.rank),\n        ...(row.session_id != null ? { session_id: row.session_id } : {}),\n      });\n    }\n  }\n\n  // -- spores branch --------------------------------------------------------\n  if (typeFilter === undefined || typeFilter === 'spore') {\n    const sporeRows = db.prepare(\n      `SELECT s.id, s.observation_type, s.session_id,\n              substr(COALESCE(s.content, ''), 1, ?) AS preview,\n              fts.rank\n       FROM spores_fts fts\n       JOIN spores s ON s.rowid = fts.rowid\n       WHERE spores_fts MATCH ?\n       ORDER BY fts.rank\n       LIMIT ?`\n    ).all(SEARCH_PREVIEW_CHARS, query, limit) as Array<{\n      id: string;\n      observation_type: string;\n      session_id: string | null;\n      preview: string;\n      rank: number;\n    }>;\n\n    for (const row of sporeRows) {\n      results.push({\n        id: String(row.id),\n        type: 'spore',\n        title: row.observation_type,\n        preview: row.preview,\n        score: Math.abs(row.rank),\n        ...(row.session_id != null ? { session_id: row.session_id } : {}),\n      });\n    }\n  }\n\n  // -- sessions branch ------------------------------------------------------\n  if (typeFilter === undefined || typeFilter === 'session') {\n    const sessionRows = db.prepare(\n      `SELECT s.id, s.title,\n              substr(COALESCE(s.summary, s.title, ''), 1, ?) AS preview,\n              fts.rank\n       FROM sessions_fts fts\n       JOIN sessions s ON s.rowid = fts.rowid\n       WHERE sessions_fts MATCH ?\n       ORDER BY fts.rank\n       LIMIT ?`\n    ).all(SEARCH_PREVIEW_CHARS, query, limit) as Array<{\n      id: string;\n      title: string | null;\n      preview: string;\n      rank: number;\n    }>;\n\n    for (const row of sessionRows) {\n      results.push({\n        id: String(row.id),\n        type: 'session',\n        title: row.title ?? `Session ${row.id.slice(-6)}`,\n        preview: row.preview,\n        score: Math.abs(row.rank),\n      });\n    }\n  }\n\n  // Sort combined results by score DESC and apply limit.\n  results.sort((a, b) => b.score - a.score);\n  return results.slice(0, limit);\n}\n\n// ---------------------------------------------------------------------------\n// Hydration — convert VectorSearchResults into SearchResults\n// ---------------------------------------------------------------------------\n\n/** Row shape returned from sessions table for hydration. */\ninterface SessionRow {\n  id: string;\n  title: string | null;\n  summary: string | null;\n  session_id?: undefined;\n}\n\n/** Row shape returned from spores table for hydration. */\ninterface SporeRow {\n  id: string;\n  observation_type: string;\n  content: string;\n  session_id: string | null;\n}\n\n/** Row shape returned from plans table for hydration. */\ninterface PlanRow {\n  id: string;\n  title: string | null;\n  content: string | null;\n  session_id: string | null;\n}\n\n/** Row shape returned from artifacts table for hydration. */\ninterface ArtifactRow {\n  id: string;\n  title: string;\n  content: string | null;\n}\n\n/**\n * Hydrate vector search results into SearchResults by fetching full records\n * from the record store.\n *\n * Groups results by namespace, queries each table for the relevant IDs, then\n * maps them into SearchResult format with titles and previews.\n */\nexport function hydrateSearchResults(\n  vectorResults: VectorSearchResult[],\n): SearchResult[] {\n  if (vectorResults.length === 0) return [];\n\n  const db = getDatabase();\n  const results: SearchResult[] = [];\n\n  // Group result IDs by namespace\n  const byNamespace = new Map<string, VectorSearchResult[]>();\n  for (const vr of vectorResults) {\n    const group = byNamespace.get(vr.namespace) ?? [];\n    group.push(vr);\n    byNamespace.set(vr.namespace, group);\n  }\n\n  // Use json_each so the statement text is stable and SQLite can cache the plan.\n  const sessionStmt = db.prepare(\n    `SELECT id, title, summary FROM sessions WHERE id IN (SELECT value FROM json_each(?))`,\n  );\n  const sporeStmt = db.prepare(\n    `SELECT id, observation_type, content, session_id FROM spores WHERE id IN (SELECT value FROM json_each(?))`,\n  );\n  const planStmt = db.prepare(\n    `SELECT id, title, content, session_id FROM plans WHERE id IN (SELECT value FROM json_each(?))`,\n  );\n  const artifactStmt = db.prepare(\n    `SELECT id, title, content FROM artifacts WHERE id IN (SELECT value FROM json_each(?))`,\n  );\n  const skillStmt = db.prepare(\n    `SELECT id, name, display_name, description FROM skill_records WHERE id IN (SELECT value FROM json_each(?))`,\n  );\n\n  // --- sessions ---\n  const sessionResults = byNamespace.get('sessions');\n  if (sessionResults && sessionResults.length > 0) {\n    const ids = sessionResults.map((r) => r.id);\n    const rows = sessionStmt.all(JSON.stringify(ids)) as SessionRow[];\n\n    const rowMap = new Map(rows.map((r) => [r.id, r]));\n    for (const vr of sessionResults) {\n      const row = rowMap.get(vr.id);\n      if (!row) continue;\n      results.push({\n        id: row.id,\n        type: 'session',\n        title: row.title ?? `Session ${row.id.slice(-6)}`,\n        preview: (row.summary ?? '').slice(0, SEARCH_PREVIEW_CHARS),\n        score: vr.similarity,\n      });\n    }\n  }\n\n  // --- spores ---\n  const sporeResults = byNamespace.get('spores');\n  if (sporeResults && sporeResults.length > 0) {\n    const ids = sporeResults.map((r) => r.id);\n    const rows = sporeStmt.all(JSON.stringify(ids)) as SporeRow[];\n\n    const rowMap = new Map(rows.map((r) => [r.id, r]));\n    for (const vr of sporeResults) {\n      const row = rowMap.get(vr.id);\n      if (!row) continue;\n      results.push({\n        id: row.id,\n        type: 'spore',\n        title: row.observation_type,\n        preview: row.content.slice(0, SEARCH_PREVIEW_CHARS),\n        score: vr.similarity,\n        ...(row.session_id != null ? { session_id: row.session_id } : {}),\n      });\n    }\n  }\n\n  // --- plans ---\n  const planResults = byNamespace.get('plans');\n  if (planResults && planResults.length > 0) {\n    const ids = planResults.map((r) => r.id);\n    const rows = planStmt.all(JSON.stringify(ids)) as PlanRow[];\n\n    const rowMap = new Map(rows.map((r) => [r.id, r]));\n    for (const vr of planResults) {\n      const row = rowMap.get(vr.id);\n      if (!row) continue;\n      results.push({\n        id: row.id,\n        type: 'plan',\n        title: row.title ?? `Plan ${row.id.slice(-6)}`,\n        preview: (row.content ?? '').slice(0, SEARCH_PREVIEW_CHARS),\n        score: vr.similarity,\n        ...(row.session_id != null ? { session_id: row.session_id } : {}),\n      });\n    }\n  }\n\n  // --- artifacts ---\n  const artifactResults = byNamespace.get('artifacts');\n  if (artifactResults && artifactResults.length > 0) {\n    const ids = artifactResults.map((r) => r.id);\n    const rows = artifactStmt.all(JSON.stringify(ids)) as ArtifactRow[];\n\n    const rowMap = new Map(rows.map((r) => [r.id, r]));\n    for (const vr of artifactResults) {\n      const row = rowMap.get(vr.id);\n      if (!row) continue;\n      results.push({\n        id: row.id,\n        type: 'artifact',\n        title: row.title,\n        preview: (row.content ?? '').slice(0, SEARCH_PREVIEW_CHARS),\n        score: vr.similarity,\n      });\n    }\n  }\n\n  // --- skill_records ---\n  const skillResults = byNamespace.get('skill_records');\n  if (skillResults && skillResults.length > 0) {\n    const ids = skillResults.map((r) => r.id);\n    const rows = skillStmt.all(JSON.stringify(ids)) as Array<{ id: string; name: string; display_name: string; description: string }>;\n\n    const rowMap = new Map(rows.map((r) => [r.id, r]));\n    for (const vr of skillResults) {\n      const row = rowMap.get(vr.id);\n      if (!row) continue;\n      results.push({\n        id: row.id,\n        type: 'skill',\n        title: row.display_name || row.name,\n        preview: row.description.slice(0, SEARCH_PREVIEW_CHARS),\n        score: vr.similarity,\n      });\n    }\n  }\n\n  // Preserve the original similarity-based ordering from vector search\n  results.sort((a, b) => b.score - a.score);\n  return 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package/dist/{chunk-7OYXB2NM.js → chunk-TZAXQKO6.js}

@@ -124,6 +124,10 @@ function buildSporeWhere(options) {
     const pattern = `%${options.search}%`;
     params.push(pattern, pattern);
   }
+  if (options.since !== void 0) {
+    conditions.push("created_at > ?");
+    params.push(options.since);
+  }
   return {
     where: conditions.length > 0 ? `WHERE ${conditions.join(" AND ")}` : "",
     params
@@ -183,4 +187,4 @@ export {
   listSporeIdsSince,
   updateSporeStatus
 };
-//# sourceMappingURL=chunk-7OYXB2NM.js.map
+//# sourceMappingURL=chunk-TZAXQKO6.js.map

package/dist/chunk-TZAXQKO6.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/db/queries/spores.ts"],"sourcesContent":["/**\n * Spore CRUD query helpers.\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport { getDatabase } from '@myco/db/client.js';\nimport { getTeamMachineId } from '@myco/daemon/team-context.js';\nimport { syncRow } from '@myco/db/queries/team-outbox.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Default number of spores returned by listSpores when no limit given. */\nconst DEFAULT_LIST_LIMIT = 100;\n\n/** Default spore status for new spores. */\nconst DEFAULT_STATUS = 'active';\n\n/** Default importance score for new spores. */\nexport const DEFAULT_IMPORTANCE = 5;\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Fields required (or optional) when inserting a spore. */\nexport interface SporeInsert {\n  id: string;\n  agent_id: string;\n  observation_type: string;\n  content: string;\n  created_at: number;\n  session_id?: string | null;\n  prompt_batch_id?: number | null;\n  status?: string;\n  context?: string | null;\n  importance?: number;\n  file_path?: string | null;\n  tags?: string | null;\n  content_hash?: string | null;\n  properties?: string | null;\n  updated_at?: number | null;\n  machine_id?: string;\n}\n\n/** Row shape returned from spore queries (all columns). */\nexport interface SporeRow {\n  id: string;\n  agent_id: string;\n  session_id: string | null;\n  prompt_batch_id: number | null;\n  observation_type: string;\n  status: string;\n  content: string;\n  context: string | null;\n  importance: number;\n  file_path: string | null;\n  tags: string | null;\n  content_hash: string | null;\n  properties: string | null;\n  embedded: number;\n  created_at: number;\n  updated_at: number | null;\n  machine_id: string;\n  synced_at: number | null;\n}\n\n/** Filter options for `listSpores`. */\nexport interface ListSporesOptions {\n  agent_id?: string;\n  observation_type?: string;\n  status?: string;\n  session_id?: string;\n  search?: string;\n  /** Only return spores created after this epoch-seconds timestamp. */\n  since?: number;\n  limit?: number;\n  offset?: number;\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst SPORE_COLUMNS = [\n  'id',\n  'agent_id',\n  'session_id',\n  'prompt_batch_id',\n  'observation_type',\n  'status',\n  'content',\n  'context',\n  'importance',\n  'file_path',\n  'tags',\n  'content_hash',\n  'properties',\n  'embedded',\n  'created_at',\n  'updated_at',\n  'machine_id',\n  'synced_at',\n] as const;\n\nconst SELECT_COLUMNS = SPORE_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Normalize a SQLite result row into a typed SporeRow. */\nfunction toSporeRow(row: Record<string, unknown>): SporeRow {\n  return {\n    id: row.id as string,\n    agent_id: row.agent_id as string,\n    session_id: (row.session_id as string) ?? null,\n    prompt_batch_id: (row.prompt_batch_id as number) ?? null,\n    observation_type: row.observation_type as string,\n    status: row.status as string,\n    content: row.content as string,\n    context: (row.context as string) ?? null,\n    importance: row.importance as number,\n    file_path: (row.file_path as string) ?? null,\n    tags: (row.tags as string) ?? null,\n    content_hash: (row.content_hash as string) ?? null,\n    properties: (row.properties as string) ?? null,\n    embedded: (row.embedded as number) ?? 0,\n    created_at: row.created_at as number,\n    updated_at: (row.updated_at as number) ?? null,\n    machine_id: (row.machine_id as string) ?? 'local',\n    synced_at: (row.synced_at as number) ?? null,\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Insert a new spore.\n *\n * Requires a valid `agent_id` (foreign key to agents table).\n */\nexport function insertSpore(data: SporeInsert): SporeRow {\n  const db = getDatabase();\n\n  db.prepare(\n    `INSERT INTO spores (\n       id, agent_id, session_id, prompt_batch_id,\n       observation_type, status, content, context,\n       importance, file_path, tags, content_hash,\n       properties, created_at, updated_at, machine_id\n     ) VALUES (\n       ?, ?, ?, ?,\n       ?, ?, ?, ?,\n       ?, ?, ?, ?,\n       ?, ?, ?, ?\n     )`,\n  ).run(\n    data.id,\n    data.agent_id,\n    data.session_id ?? null,\n    data.prompt_batch_id ?? null,\n    data.observation_type,\n    data.status ?? DEFAULT_STATUS,\n    data.content,\n    data.context ?? null,\n    data.importance ?? DEFAULT_IMPORTANCE,\n    data.file_path ?? null,\n    data.tags ?? null,\n    data.content_hash ?? null,\n    data.properties ?? null,\n    data.created_at,\n    data.updated_at ?? null,\n    data.machine_id ?? getTeamMachineId(),\n  );\n\n  const row = toSporeRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM spores WHERE id = ?`).get(data.id) as Record<string, unknown>,\n  );\n\n  syncRow('spores', row);\n\n  return row;\n}\n\n/**\n * Retrieve a single spore by id.\n *\n * @returns the spore row, or null if not found.\n */\nexport function getSpore(id: string): SporeRow | null {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT ${SELECT_COLUMNS} FROM spores WHERE id = ?`,\n  ).get(id) as Record<string, unknown> | undefined;\n\n  if (!row) return null;\n  return toSporeRow(row);\n}\n\n/**\n * List spores with optional filters, ordered by created_at DESC.\n */\n/** Build WHERE clause and bound params from spore filter options. */\nfunction buildSporeWhere(\n  options: Omit<ListSporesOptions, 'limit' | 'offset'>,\n): { where: string; params: unknown[] } {\n  const conditions: string[] = [];\n  const params: unknown[] = [];\n\n  if (options.agent_id !== undefined) {\n    conditions.push(`agent_id = ?`);\n    params.push(options.agent_id);\n  }\n  if (options.observation_type !== undefined) {\n    conditions.push(`observation_type = ?`);\n    params.push(options.observation_type);\n  }\n  if (options.status !== undefined) {\n    conditions.push(`status = ?`);\n    params.push(options.status);\n  }\n  if (options.session_id !== undefined) {\n    conditions.push(`session_id = ?`);\n    params.push(options.session_id);\n  }\n  if (options.search !== undefined && options.search.length > 0) {\n    conditions.push(`(content LIKE ? OR observation_type LIKE ?)`);\n    const pattern = `%${options.search}%`;\n    params.push(pattern, pattern);\n  }\n  if (options.since !== undefined) {\n    conditions.push('created_at > ?');\n    params.push(options.since);\n  }\n\n  return {\n    where: conditions.length > 0 ? `WHERE ${conditions.join(' AND ')}` : '',\n    params,\n  };\n}\n\n/**\n * List spores with optional filters, ordered by created_at DESC.\n */\nexport function listSpores(\n  options: ListSporesOptions = {},\n): SporeRow[] {\n  const db = getDatabase();\n  const { where, params } = buildSporeWhere(options);\n  const limit = options.limit ?? DEFAULT_LIST_LIMIT;\n  const offset = options.offset ?? 0;\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM spores\n     ${where}\n     ORDER BY created_at DESC\n     LIMIT ?\n     OFFSET ?`,\n  ).all(...params, limit, offset) as Record<string, unknown>[];\n\n  return rows.map(toSporeRow);\n}\n\n/**\n * Count spores matching optional filters (for pagination totals).\n */\nexport function countSpores(\n  options: Omit<ListSporesOptions, 'limit' | 'offset'> = {},\n): number {\n  const db = getDatabase();\n  const { where, params } = buildSporeWhere(options);\n\n  const row = db.prepare(\n    `SELECT COUNT(*) as count FROM spores ${where}`,\n  ).get(...params) as { count: number };\n\n  return row.count;\n}\n\n/**\n * Count active spores created after a given timestamp.\n * Used by skill-evolve to detect new knowledge since last assessment.\n */\nexport function countSporesSince(sinceEpoch: number): number {\n  const db = getDatabase();\n  const row = db.prepare(\n    `SELECT COUNT(*) as count FROM spores WHERE created_at > ? AND status = 'active'`,\n  ).get(sinceEpoch) as { count: number };\n  return row.count;\n}\n\n/**\n * List active spore IDs created after a given timestamp, ordered newest first.\n */\nexport function listSporeIdsSince(sinceEpoch: number, limit = 20): string[] {\n  const db = getDatabase();\n  const rows = db.prepare(\n    `SELECT id FROM spores WHERE created_at > ? AND status = 'active' ORDER BY created_at DESC LIMIT ?`,\n  ).all(sinceEpoch, limit) as Array<{ id: string }>;\n  return rows.map(r => r.id);\n}\n\n/**\n * Update the status and updated_at timestamp of a spore.\n *\n * @returns the updated row, or null if the spore does not exist.\n */\nexport function updateSporeStatus(\n  id: string,\n  status: string,\n  updatedAt: number,\n): SporeRow | null {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `UPDATE spores\n     SET status = ?, updated_at = ?\n     WHERE id = ?`,\n  ).run(status, updatedAt, id);\n\n  if (info.changes === 0) return null;\n\n  const row = toSporeRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM spores WHERE id = ?`).get(id) as Record<string, unknown>,\n  );\n\n  syncRow('spores', row);\n\n  return row;\n}\n"],"mappings":";;;;;;;;;;AAgBA,IAAM,qBAAqB;AAG3B,IAAM,iBAAiB;AAGhB,IAAM,qBAAqB;AAiElC,IAAM,gBAAgB;AAAA,EACpB;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AAAA,EACA;AACF;AAEA,IAAM,iBAAiB,cAAc,KAAK,IAAI;AAO9C,SAAS,WAAW,KAAwC;AAC1D,SAAO;AAAA,IACL,IAAI,IAAI;AAAA,IACR,UAAU,IAAI;AAAA,IACd,YAAa,IAAI,cAAyB;AAAA,IAC1C,iBAAkB,IAAI,mBAA8B;AAAA,IACpD,kBAAkB,IAAI;AAAA,IACtB,QAAQ,IAAI;AAAA,IACZ,SAAS,IAAI;AAAA,IACb,SAAU,IAAI,WAAsB;AAAA,IACpC,YAAY,IAAI;AAAA,IAChB,WAAY,IAAI,aAAwB;AAAA,IACxC,MAAO,IAAI,QAAmB;AAAA,IAC9B,cAAe,IAAI,gBAA2B;AAAA,IAC9C,YAAa,IAAI,cAAyB;AAAA,IAC1C,UAAW,IAAI,YAAuB;AAAA,IACtC,YAAY,IAAI;AAAA,IAChB,YAAa,IAAI,cAAyB;AAAA,IAC1C,YAAa,IAAI,cAAyB;AAAA,IAC1C,WAAY,IAAI,aAAwB;AAAA,EAC1C;AACF;AAWO,SAAS,YAAY,MAA6B;AACvD,QAAM,KAAK,YAAY;AAEvB,KAAG;AAAA,IACD;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA,EAWF,EAAE;AAAA,IACA,KAAK;AAAA,IACL,KAAK;AAAA,IACL,KAAK,cAAc;AAAA,IACnB,KAAK,mBAAmB;AAAA,IACxB,KAAK;AAAA,IACL,KAAK,UAAU;AAAA,IACf,KAAK;AAAA,IACL,KAAK,WAAW;AAAA,IAChB,KAAK,cAAc;AAAA,IACnB,KAAK,aAAa;AAAA,IAClB,KAAK,QAAQ;AAAA,IACb,KAAK,gBAAgB;AAAA,IACrB,KAAK,cAAc;AAAA,IACnB,KAAK;AAAA,IACL,KAAK,cAAc;AAAA,IACnB,KAAK,cAAc,iBAAiB;AAAA,EACtC;AAEA,QAAM,MAAM;AAAA,IACV,GAAG,QAAQ,UAAU,cAAc,2BAA2B,EAAE,IAAI,KAAK,EAAE;AAAA,EAC7E;AAEA,UAAQ,UAAU,GAAG;AAErB,SAAO;AACT;AAOO,SAAS,SAAS,IAA6B;AACpD,QAAM,KAAK,YAAY;AAEvB,QAAM,MAAM,GAAG;AAAA,IACb,UAAU,cAAc;AAAA,EAC1B,EAAE,IAAI,EAAE;AAER,MAAI,CAAC,IAAK,QAAO;AACjB,SAAO,WAAW,GAAG;AACvB;AAMA,SAAS,gBACP,SACsC;AACtC,QAAM,aAAuB,CAAC;AAC9B,QAAM,SAAoB,CAAC;AAE3B,MAAI,QAAQ,aAAa,QAAW;AAClC,eAAW,KAAK,cAAc;AAC9B,WAAO,KAAK,QAAQ,QAAQ;AAAA,EAC9B;AACA,MAAI,QAAQ,qBAAqB,QAAW;AAC1C,eAAW,KAAK,sBAAsB;AACtC,WAAO,KAAK,QAAQ,gBAAgB;AAAA,EACtC;AACA,MAAI,QAAQ,WAAW,QAAW;AAChC,eAAW,KAAK,YAAY;AAC5B,WAAO,KAAK,QAAQ,MAAM;AAAA,EAC5B;AACA,MAAI,QAAQ,eAAe,QAAW;AACpC,eAAW,KAAK,gBAAgB;AAChC,WAAO,KAAK,QAAQ,UAAU;AAAA,EAChC;AACA,MAAI,QAAQ,WAAW,UAAa,QAAQ,OAAO,SAAS,GAAG;AAC7D,eAAW,KAAK,6CAA6C;AAC7D,UAAM,UAAU,IAAI,QAAQ,MAAM;AAClC,WAAO,KAAK,SAAS,OAAO;AAAA,EAC9B;AACA,MAAI,QAAQ,UAAU,QAAW;AAC/B,eAAW,KAAK,gBAAgB;AAChC,WAAO,KAAK,QAAQ,KAAK;AAAA,EAC3B;AAEA,SAAO;AAAA,IACL,OAAO,WAAW,SAAS,IAAI,SAAS,WAAW,KAAK,OAAO,CAAC,KAAK;AAAA,IACrE;AAAA,EACF;AACF;AAKO,SAAS,WACd,UAA6B,CAAC,GAClB;AACZ,QAAM,KAAK,YAAY;AACvB,QAAM,EAAE,OAAO,OAAO,IAAI,gBAAgB,OAAO;AACjD,QAAM,QAAQ,QAAQ,SAAS;AAC/B,QAAM,SAAS,QAAQ,UAAU;AAEjC,QAAM,OAAO,GAAG;AAAA,IACd,UAAU,cAAc;AAAA;AAAA,OAErB,KAAK;AAAA;AAAA;AAAA;AAAA,EAIV,EAAE,IAAI,GAAG,QAAQ,OAAO,MAAM;AAE9B,SAAO,KAAK,IAAI,UAAU;AAC5B;AAKO,SAAS,YACd,UAAuD,CAAC,GAChD;AACR,QAAM,KAAK,YAAY;AACvB,QAAM,EAAE,OAAO,OAAO,IAAI,gBAAgB,OAAO;AAEjD,QAAM,MAAM,GAAG;AAAA,IACb,wCAAwC,KAAK;AAAA,EAC/C,EAAE,IAAI,GAAG,MAAM;AAEf,SAAO,IAAI;AACb;AAiBO,SAAS,kBAAkB,YAAoB,QAAQ,IAAc;AAC1E,QAAM,KAAK,YAAY;AACvB,QAAM,OAAO,GAAG;AAAA,IACd;AAAA,EACF,EAAE,IAAI,YAAY,KAAK;AACvB,SAAO,KAAK,IAAI,OAAK,EAAE,EAAE;AAC3B;AAOO,SAAS,kBACd,IACA,QACA,WACiB;AACjB,QAAM,KAAK,YAAY;AAEvB,QAAM,OAAO,GAAG;AAAA,IACd;AAAA;AAAA;AAAA,EAGF,EAAE,IAAI,QAAQ,WAAW,EAAE;AAE3B,MAAI,KAAK,YAAY,EAAG,QAAO;AAE/B,QAAM,MAAM;AAAA,IACV,GAAG,QAAQ,UAAU,cAAc,2BAA2B,EAAE,IAAI,EAAE;AAAA,EACxE;AAEA,UAAQ,UAAU,GAAG;AAErB,SAAO;AACT;","names":[]}

package/dist/{chunk-EO2RQW4S.js → chunk-W7WENJ6F.js}

@@ -11,7 +11,7 @@ var cached;
 function getPluginVersion() {
   if (cached) return cached;
   if (true) {
-    cached = "0.18.0";
+    cached = "0.18.1";
     return cached;
   }
   const root = findPackageRoot(path.dirname(fileURLToPath(import.meta.url)));
@@ -32,4 +32,4 @@ function getPluginVersion() {
 export {
   getPluginVersion
 };
-//# sourceMappingURL=chunk-EO2RQW4S.js.map
+//# sourceMappingURL=chunk-W7WENJ6F.js.map

package/dist/{chunk-BUIR3JWM.js → chunk-XWOQL4XN.js}

@@ -1,7 +1,7 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   getPluginVersion
-} from "./chunk-EO2RQW4S.js";
+} from "./chunk-W7WENJ6F.js";
 import {
   DAEMON_CLIENT_TIMEOUT_MS,
   DAEMON_HEALTH_CHECK_TIMEOUT_MS,
@@ -185,4 +185,4 @@ export {
   resolveCliEntryPath,
   DaemonClient
 };
-//# sourceMappingURL=chunk-BUIR3JWM.js.map
+//# sourceMappingURL=chunk-XWOQL4XN.js.map

package/dist/{chunk-PFWIPRF6.js → chunk-YZPI2Y3E.js}

@@ -1,7 +1,7 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   loadManifests
-} from "./chunk-FABWUX5G.js";
+} from "./chunk-DPSLJ242.js";
 import {
   STDIN_TIMEOUT_MS
 } from "./chunk-CKJAWZQE.js";
@@ -114,4 +114,4 @@ export {
   readStdin,
   normalizeHookInput
 };
-//# sourceMappingURL=chunk-PFWIPRF6.js.map
+//# sourceMappingURL=chunk-YZPI2Y3E.js.map

package/dist/{cli-IIMBALPV.js → cli-D3TJYJ2U.js}

@@ -2,7 +2,7 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   loadEnv
-} from "./chunk-55QEICRO.js";
+} from "./chunk-TLK46KKD.js";
 import "./chunk-SAKJMNSR.js";
 import "./chunk-WYOE4IAX.js";
 import "./chunk-CML4MCYF.js";
@@ -10,8 +10,8 @@ import "./chunk-MYX5NCRH.js";
 import {
   resolveVaultDir
 } from "./chunk-5ZT2Q6P5.js";
-import "./chunk-BUIR3JWM.js";
-import "./chunk-EO2RQW4S.js";
+import "./chunk-XWOQL4XN.js";
+import "./chunk-W7WENJ6F.js";
 import "./chunk-LPUQPDC2.js";
 import "./chunk-CKJAWZQE.js";
 import "./chunk-E7NUADTQ.js";
@@ -55,29 +55,29 @@ async function main() {
     process.stdout.write(USAGE);
     return;
   }
-  if (cmd === "init") return (await import("./init-WYYL44KZ.js")).run(args);
+  if (cmd === "init") return (await import("./init-QFNBKKDC.js")).run(args);
   if (cmd === "detect-providers") return (await import("./detect-providers-PSVKXTWE.js")).run(args);
   if (cmd === "version" || cmd === "--version" || cmd === "-v") {
-    const { getPluginVersion } = await import("./version-YPBIKH77.js");
+    const { getPluginVersion } = await import("./version-QEVU66NT.js");
     console.log(getPluginVersion());
     return;
   }
-  if (cmd === "mcp") return (await import("./server-6SUNYDV7.js")).main();
+  if (cmd === "mcp") return (await import("./server-PTXLVVEE.js")).main();
   if (cmd === "hook") {
     const hookName = args[0];
     const HOOK_DISPATCH = {
-      "session-start": () => import("./session-start-5MB3LFOA.js"),
-      "session-end": () => import("./session-end-OUTY7AFF.js"),
-      "stop": () => import("./stop-YGHODSP7.js"),
-      "user-prompt-submit": () => import("./user-prompt-submit-4IBFUYQ3.js"),
-      "post-tool-use": () => import("./post-tool-use-DENRI5WB.js"),
-      "post-tool-use-failure": () => import("./post-tool-use-failure-A6SNJX42.js"),
-      "subagent-start": () => import("./subagent-start-ZBQ5PJB5.js"),
-      "subagent-stop": () => import("./subagent-stop-N2TDQU2D.js"),
-      "stop-failure": () => import("./stop-failure-7IJTPJ6W.js"),
-      "task-completed": () => import("./task-completed-BDLMRSBB.js"),
-      "pre-compact": () => import("./pre-compact-3Q4BALCL.js"),
-      "post-compact": () => import("./post-compact-HT24YMAN.js")
+      "session-start": () => import("./session-start-NIMWEOIZ.js"),
+      "session-end": () => import("./session-end-SMU55UCM.js"),
+      "stop": () => import("./stop-7AKYBJJ2.js"),
+      "user-prompt-submit": () => import("./user-prompt-submit-IZJC3NV7.js"),
+      "post-tool-use": () => import("./post-tool-use-FRTSICC3.js"),
+      "post-tool-use-failure": () => import("./post-tool-use-failure-KYO2NCNB.js"),
+      "subagent-start": () => import("./subagent-start-LBNZF2TG.js"),
+      "subagent-stop": () => import("./subagent-stop-B2Z5GYAB.js"),
+      "stop-failure": () => import("./stop-failure-NLE2EURG.js"),
+      "task-completed": () => import("./task-completed-PO5TETJ7.js"),
+      "pre-compact": () => import("./pre-compact-J6GCJEJR.js"),
+      "post-compact": () => import("./post-compact-2TJ5FPZH.js")
     };
     const loader = HOOK_DISPATCH[hookName];
     if (!loader) {
@@ -86,13 +86,13 @@ async function main() {
     }
     return (await loader()).main();
   }
-  if (cmd === "daemon") return (await import("./main-6PY3ITQ5.js")).main();
+  if (cmd === "daemon") return (await import("./main-5THODR77.js")).main();
   if (cmd === "doctor") {
     const vaultDir2 = resolveVaultDir();
-    return (await import("./doctor-QYD34X7Q.js")).run(args, vaultDir2);
+    return (await import("./doctor-KCTXPX5D.js")).run(args, vaultDir2);
   }
-  if (cmd === "update") return (await import("./update-STLAN7LR.js")).run(args);
-  if (cmd === "remove") return (await import("./remove-YB5A6HY2.js")).run(args);
+  if (cmd === "update") return (await import("./update-WBWB5URU.js")).run(args);
+  if (cmd === "remove") return (await import("./remove-3WZZC7AX.js")).run(args);
   const vaultDir = resolveVaultDir();
   if (!fs.existsSync(path.join(vaultDir, "myco.yaml"))) {
     console.error(`No myco.yaml found in ${vaultDir}. Run 'myco init' first.`);
@@ -102,35 +102,35 @@ async function main() {
     case "config":
       return (await import("./config-DA4IUVFL.js")).run(args, vaultDir);
     case "verify":
-      return (await import("./verify-EJYPO7QA.js")).run(args, vaultDir);
+      return (await import("./verify-FNSP62I3.js")).run(args, vaultDir);
     case "stats":
-      return (await import("./stats-DGI6B3HX.js")).run(args, vaultDir);
+      return (await import("./stats-GEOQ2DFF.js")).run(args, vaultDir);
     case "search":
-      return (await import("./search-WOHT3G55.js")).run(args, vaultDir);
+      return (await import("./search-ZGN3LDXG.js")).run(args, vaultDir);
     case "vectors":
-      return (await import("./search-WOHT3G55.js")).runVectors(args, vaultDir);
+      return (await import("./search-ZGN3LDXG.js")).runVectors(args, vaultDir);
     case "session":
-      return (await import("./session-W3SKRFRV.js")).run(args, vaultDir);
+      return (await import("./session-7VV3IQMO.js")).run(args, vaultDir);
     case "setup-llm":
-      return (await import("./setup-llm-ZMYGIQX5.js")).run(args, vaultDir);
+      return (await import("./setup-llm-7S3VPAPN.js")).run(args, vaultDir);
     case "setup-digest":
       return (await import("./setup-digest-4KDSXAIV.js")).run(args, vaultDir);
     case "agent":
-      return (await import("./agent-run-2NFYMQXW.js")).run(args, vaultDir);
+      return (await import("./agent-run-I4O2K2CK.js")).run(args, vaultDir);
     case "task":
-      return (await import("./agent-tasks-MEIYLXGN.js")).run(args, vaultDir);
+      return (await import("./agent-tasks-UOW5BQIB.js")).run(args, vaultDir);
     case "team": {
       const sub = args[0];
-      if (sub === "init") return (await import("./team-2ZFGTSIN.js")).teamInit(vaultDir);
-      if (sub === "upgrade") return (await import("./team-2ZFGTSIN.js")).teamUpgrade(vaultDir);
+      if (sub === "init") return (await import("./team-DPNP2RN7.js")).teamInit(vaultDir);
+      if (sub === "upgrade") return (await import("./team-DPNP2RN7.js")).teamUpgrade(vaultDir);
       console.error("Usage: myco team <init|upgrade>");
       process.exit(1);
       break;
     }
     case "open":
-      return (await import("./open-HRFMJDQX.js")).run(args, vaultDir);
+      return (await import("./open-7737CSPN.js")).run(args, vaultDir);
     case "restart":
-      return (await import("./restart-RGDVHELZ.js")).run(args, vaultDir);
+      return (await import("./restart-HUHEFOXU.js")).run(args, vaultDir);
     case "logs":
       return (await import("./logs-TMKNLSJY.js")).run(args, vaultDir);
     default:
@@ -143,4 +143,4 @@ main().catch((err) => {
   console.error(`myco: ${err.message}`);
   process.exit(1);
 });
-//# sourceMappingURL=cli-IIMBALPV.js.map
+//# sourceMappingURL=cli-D3TJYJ2U.js.map

package/dist/{client-VZCUISHZ.js → client-4LLEXLVK.js}

@@ -2,8 +2,8 @@ import { createRequire as __cr } from 'node:module'; const require = __cr(import
 import {
   DaemonClient,
   resolveCliEntryPath
-} from "./chunk-BUIR3JWM.js";
-import "./chunk-EO2RQW4S.js";
+} from "./chunk-XWOQL4XN.js";
+import "./chunk-W7WENJ6F.js";
 import "./chunk-LPUQPDC2.js";
 import "./chunk-CKJAWZQE.js";
 import "./chunk-E7NUADTQ.js";
@@ -12,4 +12,4 @@ export {
   DaemonClient,
   resolveCliEntryPath
 };
-//# sourceMappingURL=client-VZCUISHZ.js.map
+//# sourceMappingURL=client-4LLEXLVK.js.map

package/dist/{detect-GEM3NVK6.js → detect-SZ2KDUF4.js}

@@ -3,7 +3,7 @@ import {
   detectSymbionts,
   loadManifests,
   resolvePackageRoot
-} from "./chunk-FABWUX5G.js";
+} from "./chunk-DPSLJ242.js";
 import "./chunk-LPUQPDC2.js";
 import "./chunk-D7TYRPRM.js";
 import "./chunk-E4VLWIJC.js";
@@ -14,4 +14,4 @@ export {
   loadManifests,
   resolvePackageRoot
 };
-//# sourceMappingURL=detect-GEM3NVK6.js.map
+//# sourceMappingURL=detect-SZ2KDUF4.js.map

package/dist/{doctor-QYD34X7Q.js → doctor-KCTXPX5D.js}

@@ -1,15 +1,15 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   isProcessAlive
-} from "./chunk-55QEICRO.js";
+} from "./chunk-TLK46KKD.js";
 import "./chunk-SAKJMNSR.js";
 import {
   MYCO_MCP_SERVER_NAME
 } from "./chunk-WYOE4IAX.js";
 import "./chunk-CML4MCYF.js";
 import "./chunk-MYX5NCRH.js";
-import "./chunk-BUIR3JWM.js";
-import "./chunk-EO2RQW4S.js";
+import "./chunk-XWOQL4XN.js";
+import "./chunk-W7WENJ6F.js";
 import "./chunk-LPUQPDC2.js";
 import "./chunk-CKJAWZQE.js";
 import "./chunk-E7NUADTQ.js";
@@ -82,7 +82,7 @@ async function checkIntelligence(config) {
 }
 async function checkEmbeddings(config) {
   try {
-    const { createEmbeddingProvider } = await import("./llm-KEDHK3TQ.js");
+    const { createEmbeddingProvider } = await import("./llm-SMA5ZEAW.js");
     const provider = createEmbeddingProvider(config.embedding);
     const available = await provider.isAvailable();
     const label = `${config.embedding.provider} / ${config.embedding.model}`;
@@ -96,7 +96,7 @@ async function checkEmbeddings(config) {
 }
 async function checkAgents(vaultDir, config) {
   try {
-    const { detectSymbionts } = await import("./detect-GEM3NVK6.js");
+    const { detectSymbionts } = await import("./detect-SZ2KDUF4.js");
     const { getEnabledSymbiontNames } = await import("./loader-Q3P3R4UP.js");
     const projectRoot = path.dirname(vaultDir);
     const detected = detectSymbionts(projectRoot);
@@ -271,4 +271,4 @@ export {
   run,
   runChecks
 };
-//# sourceMappingURL=doctor-QYD34X7Q.js.map
+//# sourceMappingURL=doctor-KCTXPX5D.js.map