@goondocks/myco 0.17.1 → 0.17.2

package/dist/{chunk-FEX6ALLH.js → chunk-XD3NEN3Q.js}

@@ -1,7 +1,7 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   SCHEDULABLE_POWER_STATES
-} from "./chunk-6SDC6V3N.js";
+} from "./chunk-7DAH5GLC.js";
 import {
   require_dist
 } from "./chunk-D7TYRPRM.js";
@@ -35,7 +35,7 @@ var CaptureSchema = external_exports.object({
   buffer_max_events: external_exports.number().int().positive().default(500)
 });
 var ProviderOverrideSchema = external_exports.object({
-  type: external_exports.enum(["cloud", "ollama", "lmstudio"]),
+  type: external_exports.enum(["anthropic", "ollama", "lmstudio"]),
   base_url: external_exports.string().optional(),
   model: external_exports.string().optional(),
   /** Context window size for local models (Ollama num_ctx, LM Studio context_length). */
@@ -283,6 +283,32 @@ var MIGRATIONS = [
       doc.agent = agent;
       doc.skills = skills;
     }
+  },
+  {
+    version: 4,
+    name: "rename-cloud-provider-to-anthropic",
+    migrate(doc, _vaultDir) {
+      const renameProvider = (provider) => {
+        if (provider && typeof provider === "object" && provider.type === "cloud") {
+          provider.type = "anthropic";
+        }
+      };
+      const agent = doc.agent;
+      if (!agent) return;
+      renameProvider(agent.provider);
+      const tasks = agent.tasks;
+      if (tasks) {
+        for (const taskConfig of Object.values(tasks)) {
+          renameProvider(taskConfig.provider);
+          const phases = taskConfig.phases;
+          if (phases) {
+            for (const phaseConfig of Object.values(phases)) {
+              renameProvider(phaseConfig.provider);
+            }
+          }
+        }
+      }
+    }
   }
 ];
 var CURRENT_MIGRATION_VERSION = MIGRATIONS[MIGRATIONS.length - 1]?.version ?? 0;
@@ -404,4 +430,4 @@ export {
   getEnabledSymbiontNames,
   updateTeamConfig
 };
-//# sourceMappingURL=chunk-FEX6ALLH.js.map
+//# sourceMappingURL=chunk-XD3NEN3Q.js.map

package/dist/chunk-XD3NEN3Q.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/config/loader.ts","../src/config/schema.ts","../src/config/migrations.ts"],"sourcesContent":["import fs from 'node:fs';\nimport path from 'node:path';\nimport YAML from 'yaml';\nimport { MycoConfigSchema, type MycoConfig, type BackupConfig, type TeamConfig } from './schema.js';\nimport { runMigrations, CURRENT_MIGRATION_VERSION } from './migrations.js';\n\nexport const CONFIG_FILENAME = 'myco.yaml';\n\nexport function loadConfig(vaultDir: string): MycoConfig {\n  const configPath = path.join(vaultDir, CONFIG_FILENAME);\n\n  if (!fs.existsSync(configPath)) {\n    throw new Error(`myco.yaml not found in ${vaultDir}`);\n  }\n\n  const raw = fs.readFileSync(configPath, 'utf-8');\n  const parsed = YAML.parse(raw) as Record<string, unknown>;\n\n  // Detect v1 config and guide migration\n  if (parsed.version === 1 || (parsed.intelligence as Record<string, unknown>)?.backend) {\n    throw new Error(\n      'Myco config uses v1 format. Run /myco:setup-llm to reconfigure for v2.',\n    );\n  }\n\n  // --- v2 → v3 migration ---\n  let v2Migrated = false;\n  if (parsed.version === 2) {\n    // Extract intelligence.embedding to top-level embedding\n    const intel = parsed.intelligence as Record<string, unknown> | undefined;\n    const embeddingConfig = intel?.embedding as Record<string, unknown> | undefined;\n    if (embeddingConfig && !parsed.embedding) {\n      // Map v2 'lm-studio' to v3 'openai-compatible' for embedding provider\n      if (embeddingConfig.provider === 'lm-studio') {\n        embeddingConfig.provider = 'openai-compatible';\n      }\n      parsed.embedding = embeddingConfig;\n    }\n\n    // Keep daemon.port and daemon.log_level, drop grace_period and max_log_size\n    const daemon = parsed.daemon as Record<string, unknown> | undefined;\n    if (daemon) {\n      const { port, log_level } = daemon;\n      parsed.daemon = { port: port ?? null, log_level: log_level ?? 'info' };\n    }\n\n    // Keep capture basics, drop token-related fields; migrate artifact_watch → plan_dirs\n    const capture = parsed.capture as Record<string, unknown> | undefined;\n    if (capture) {\n      const { transcript_paths, artifact_watch, plan_dirs, artifact_extensions, buffer_max_events } = capture;\n      parsed.capture = {\n        transcript_paths,\n        plan_dirs: plan_dirs ?? artifact_watch,\n        artifact_extensions,\n        buffer_max_events,\n      };\n    }\n\n    // Drop removed top-level sections\n    delete parsed.intelligence;\n    delete parsed.context;\n    delete parsed.team;\n    delete parsed.digest;\n    delete parsed.pipeline;\n\n    // Set version to 3\n    parsed.version = 3;\n    v2Migrated = true;\n\n    process.stderr.write('[myco migration] Migrated config from v2 to v3\\n');\n  }\n\n  // Run numbered migrations (for v3+ forward migrations)\n  const migrationsRan = runMigrations(parsed, vaultDir, (msg) => {\n    process.stderr.write(`[myco migration] ${msg}\\n`);\n  });\n\n  // Parse with Zod to fill in defaults for new config sections\n  const config = MycoConfigSchema.parse(parsed);\n\n  // Write back if v2→v3 migration ran, numbered migrations ran, or new defaults were added\n  const needsWrite = v2Migrated\n    || migrationsRan\n    || (parsed.config_version as number ?? 0) < CURRENT_MIGRATION_VERSION\n    || parsed.version !== config.version;\n\n  if (needsWrite) {\n    const fullConfig = JSON.parse(JSON.stringify(config)) as Record<string, unknown>;\n    fs.writeFileSync(configPath, YAML.stringify(fullConfig), 'utf-8');\n  }\n\n  return config;\n}\n\nexport function saveConfig(vaultDir: string, config: MycoConfig): void {\n  // Validate before writing — OAK lesson: validate on write, not just read\n  const validated = MycoConfigSchema.parse(config);\n\n  const configPath = path.join(vaultDir, CONFIG_FILENAME);\n  fs.mkdirSync(vaultDir, { recursive: true });\n  fs.writeFileSync(configPath, YAML.stringify(validated), 'utf-8');\n}\n\nexport function updateConfig(\n  vaultDir: string,\n  fn: (config: MycoConfig) => MycoConfig,\n): MycoConfig {\n  const current = loadConfig(vaultDir);\n  const updated = fn(current);\n  saveConfig(vaultDir, updated);\n  return updated;\n}\n\nexport function updateBackupConfig(\n  vaultDir: string,\n  backup: Partial<BackupConfig>,\n): MycoConfig {\n  return updateConfig(vaultDir, (config) => ({\n    ...config,\n    backup: { ...config.backup, ...backup },\n  }));\n}\n\n/**\n * Extract the set of enabled symbiont names from config.\n * Returns null when the `symbionts` section is absent (pre-existing installs),\n * signalling callers to fall back to their own heuristic.\n */\nexport function getEnabledSymbiontNames(config: MycoConfig): Set<string> | null {\n  if (!config.symbionts) return null;\n  return new Set(\n    Object.entries(config.symbionts)\n      .filter(([, entry]) => entry.enabled)\n      .map(([name]) => name),\n  );\n}\n\nexport function updateTeamConfig(\n  vaultDir: string,\n  team: Partial<TeamConfig>,\n): MycoConfig {\n  return updateConfig(vaultDir, (config) => ({\n    ...config,\n    team: { ...config.team, ...team },\n  }));\n}\n","import { z } from 'zod';\nimport { SCHEDULABLE_POWER_STATES } from '@myco/constants.js';\n\nconst EmbeddingProviderSchema = z.object({\n  provider: z.enum(['ollama', 'openai-compatible', 'openrouter', 'openai']).default('ollama'),\n  model: z.string().default('bge-m3'),\n  base_url: z.string().url().optional(),\n});\n\nconst DaemonSchema = z.object({\n  port: z.number().int().min(1024).max(65535).nullable().default(null),\n  log_level: z.enum(['debug', 'info', 'warn', 'error']).default('info'),\n  log_retention_days: z.number().int().min(1).max(365).default(30),\n});\n\nconst CaptureSchema = z.object({\n  transcript_paths: z.array(z.string()).default([]),\n  plan_dirs: z.array(z.string()).default([]),\n  artifact_extensions: z.array(z.string()).default(['.md']),\n  buffer_max_events: z.number().int().positive().default(500),\n});\n\n/** Provider config shape used in both task-level and phase-level overrides. */\nconst ProviderOverrideSchema = z.object({\n  type: z.enum(['anthropic', 'ollama', 'lmstudio']),\n  base_url: z.string().optional(),\n  model: z.string().optional(),\n  /** Context window size for local models (Ollama num_ctx, LM Studio context_length). */\n  context_length: z.number().int().positive().optional(),\n});\n\n/** Per-phase overrides within a task — keyed by phase name. */\nconst PhaseOverrideSchema = z.object({\n  provider: ProviderOverrideSchema.optional(),\n  model: z.string().optional(),\n  maxTurns: z.number().int().positive().optional(),\n});\n\n/** Per-task schedule override — partial, merges with YAML defaults. */\nconst ScheduleOverrideSchema = z.object({\n  enabled: z.boolean().optional(),\n  intervalSeconds: z.number().int().positive().optional(),\n  runIn: z.array(z.enum([...SCHEDULABLE_POWER_STATES])).optional(),\n  preCondition: z.enum(['has-unprocessed-batches', 'has-active-skills', 'has-approved-candidates']).optional(),\n}).optional();\n\n/** Per-task config override — stored in myco.yaml under agent.tasks. */\nconst TaskProviderOverrideSchema = z.object({\n  provider: ProviderOverrideSchema.optional(),\n  model: z.string().optional(),\n  maxTurns: z.number().int().positive().optional(),\n  timeoutSeconds: z.number().int().positive().optional(),\n  phases: z.record(z.string(), PhaseOverrideSchema).optional(),\n  schedule: ScheduleOverrideSchema,\n  /** Task-specific params — keys and types vary per task. */\n  params: z.record(z.string(), z.union([z.string(), z.number(), z.boolean()])).optional(),\n});\n\nconst ContextSchema = z.object({\n  /** Which digest tier to inject at session start. */\n  digest_tier: z.number().int().default(5000),\n  /** Enable semantic spore search on each user prompt. */\n  prompt_search: z.boolean().default(true),\n  /** Max spores to inject per prompt (0-10). */\n  prompt_max_spores: z.number().int().min(0).max(10).default(3),\n});\n\nconst AgentSchema = z.object({\n  /** Number of batches between event-driven summary triggers (0 to disable). */\n  summary_batch_interval: z.number().int().min(0).default(5),\n  /** Global toggle for PowerManager-scheduled agent tasks. */\n  scheduled_tasks_enabled: z.boolean().default(true),\n  /** Global toggle for event-driven agent tasks (title-summary). */\n  event_tasks_enabled: z.boolean().default(true),\n  /** Global default provider — applies to all tasks unless overridden per-task. */\n  provider: ProviderOverrideSchema.optional(),\n  /** Global default model — applies to all tasks unless overridden per-task. */\n  model: z.string().optional(),\n  /** Per-task overrides keyed by task name. */\n  tasks: z.record(z.string(), TaskProviderOverrideSchema).optional(),\n});\n\nconst BackupSchema = z.object({\n  /** Override directory for backup files. Supports ~ for home directory. When unset, defaults to .myco/backups. */\n  dir: z.string().optional(),\n});\n\nconst MaintenanceSchema = z.object({\n  /** Automatically run PRAGMA optimize on a schedule. */\n  auto_optimize: z.boolean().default(true),\n  /** How often to run auto-optimize, in hours (1–720). */\n  auto_optimize_interval_hours: z.number().int().min(1).max(720).default(24),\n});\n\nconst TeamSchema = z.object({\n  /** Whether team sync is enabled. */\n  enabled: z.boolean().default(false),\n  /** Cloudflare Worker URL for team sync. */\n  worker_url: z.string().url().optional(),\n  /** Team identifier for sync grouping. */\n  team_id: z.string().optional(),\n  /** Sync interval in minutes. */\n  interval_minutes: z.number().int().min(1).max(1440).default(15),\n  /** Package version of the last deployed worker. Used to detect when an upgrade is needed. */\n  deployed_worker_version: z.string().optional(),\n});\n\nconst SkillsSchema = z.object({\n  /** Auto-generate candidates above this confidence score. */\n  confidence_threshold: z.number().min(0).max(1).default(0.7),\n  /** Flag unused skills after this many days. */\n  usage_stale_days: z.number().int().positive().default(30),\n});\n\nconst NotificationsSchema = z.object({\n  /** Master switch — disables all notifications when false. */\n  enabled: z.boolean().default(true),\n  /** Allow browser system notifications (Notification API). */\n  system_notifications: z.boolean().default(false),\n  /** Default display mode for new notification types. */\n  default_mode: z.enum(['banner', 'summary']).default('banner'),\n  /** Per-domain settings. Keys are domain names from the registry. */\n  domains: z.record(z.string(), z.object({\n    enabled: z.boolean().default(true),\n    /** Override display mode for this domain. Omit to use global default_mode. */\n    mode: z.enum(['banner', 'summary']).optional(),\n  })).default({}),\n});\n\nconst SymbiontEntrySchema = z.object({\n  enabled: z.boolean().default(true),\n});\n\nexport const MycoConfigSchema = z.preprocess(\n  (raw: unknown) => {\n    if (raw && typeof raw === 'object' && 'curation' in raw && !('agent' in raw)) {\n      const { curation, ...rest } = raw as Record<string, unknown>;\n      return { ...rest, agent: curation };\n    }\n    return raw;\n  },\n  z.object({\n    version: z.literal(3),\n    config_version: z.number().int().nonnegative().default(0),\n    embedding: EmbeddingProviderSchema.default(() => EmbeddingProviderSchema.parse({})),\n    daemon: DaemonSchema.default(() => DaemonSchema.parse({})),\n    capture: CaptureSchema.default(() => CaptureSchema.parse({})),\n    agent: AgentSchema.default(() => AgentSchema.parse({})),\n    context: ContextSchema.default(() => ContextSchema.parse({})),\n    backup: BackupSchema.default(() => BackupSchema.parse({})),\n    maintenance: MaintenanceSchema.default(() => MaintenanceSchema.parse({})),\n    team: TeamSchema.default(() => TeamSchema.parse({})),\n    skills: SkillsSchema.default(() => SkillsSchema.parse({})),\n    notifications: NotificationsSchema.default(() => NotificationsSchema.parse({})),\n    symbionts: z.record(z.string(), SymbiontEntrySchema).optional(),\n  }),\n);\n\nexport type MycoConfig = z.output<typeof MycoConfigSchema>;\nexport type EmbeddingProviderConfig = z.infer<typeof EmbeddingProviderSchema>;\nexport type TaskProviderOverride = z.infer<typeof TaskProviderOverrideSchema>;\nexport type PhaseOverride = z.infer<typeof PhaseOverrideSchema>;\nexport type ScheduleOverride = z.infer<typeof ScheduleOverrideSchema>;\nexport type ContextConfig = z.infer<typeof ContextSchema>;\nexport type BackupConfig = z.infer<typeof BackupSchema>;\nexport type TeamConfig = z.infer<typeof TeamSchema>;\nexport type SkillsConfig = z.infer<typeof SkillsSchema>;\nexport type NotificationsConfig = z.infer<typeof NotificationsSchema>;\nexport type SymbiontEntry = z.infer<typeof SymbiontEntrySchema>;\n","/**\n * Config and vault migrations — run once per version, tracked by config_version.\n *\n * Each migration has a version number, a name, and a function that receives\n * the raw parsed YAML doc and the vault directory. Migrations run in order\n * and are skipped if config_version is already past them.\n *\n * To add a new migration:\n * 1. Add an entry to MIGRATIONS with the next version number\n * 2. Write the migrate function — it receives the mutable doc and vaultDir\n * 3. The framework handles version tracking and writing the config back\n */\n\nimport fs from 'node:fs';\nimport path from 'node:path';\n\nexport interface Migration {\n  version: number;\n  name: string;\n  migrate: (doc: Record<string, unknown>, vaultDir: string) => void;\n}\n\n/** Regex matching both quoted and unquoted YAML: type: memory, type: \"memory\", type: 'memory' */\nconst MEMORY_TYPE_PATTERN = /type:\\s*[\"']?memory[\"']?/g;\n\nexport const MIGRATIONS: Migration[] = [\n  {\n    version: 1,\n    name: 'rename-memories-to-spores',\n    migrate: (doc, vaultDir) => {\n      // Config: rename context.layers.memories → context.layers.spores\n      const context = doc.context as Record<string, unknown> | undefined;\n      const layers = context?.layers as Record<string, unknown> | undefined;\n      if (layers && 'memories' in layers && !('spores' in layers)) {\n        layers.spores = layers.memories;\n        delete layers.memories;\n      }\n\n      // Vault: rename memories/ directory → spores/\n      const memoriesDir = path.join(vaultDir, 'memories');\n      const sporesDir = path.join(vaultDir, 'spores');\n\n      if (!fs.existsSync(memoriesDir)) return;\n\n      if (fs.existsSync(sporesDir)) {\n        // Both exist (interrupted migration) — merge remaining files\n        const moveRemaining = (srcDir: string, destDir: string): void => {\n          for (const entry of fs.readdirSync(srcDir, { withFileTypes: true })) {\n            const srcPath = path.join(srcDir, entry.name);\n            const destPath = path.join(destDir, entry.name);\n            if (entry.isDirectory()) {\n              if (!fs.existsSync(destPath)) fs.mkdirSync(destPath, { recursive: true });\n              moveRemaining(srcPath, destPath);\n            } else if (!fs.existsSync(destPath)) {\n              fs.renameSync(srcPath, destPath);\n            }\n          }\n        };\n        moveRemaining(memoriesDir, sporesDir);\n        fs.rmSync(memoriesDir, { recursive: true, force: true });\n      } else {\n        fs.renameSync(memoriesDir, sporesDir);\n      }\n\n      // Update frontmatter type: memory → type: spore (handles quoted and unquoted)\n      const walkUpdate = (dir: string): void => {\n        for (const entry of fs.readdirSync(dir, { withFileTypes: true })) {\n          const fullPath = path.join(dir, entry.name);\n          if (entry.isDirectory()) { walkUpdate(fullPath); continue; }\n          if (!entry.name.endsWith('.md')) continue;\n          const content = fs.readFileSync(fullPath, 'utf-8');\n          MEMORY_TYPE_PATTERN.lastIndex = 0;\n          if (MEMORY_TYPE_PATTERN.test(content)) {\n            MEMORY_TYPE_PATTERN.lastIndex = 0;\n            fs.writeFileSync(fullPath, content.replace(MEMORY_TYPE_PATTERN, 'type: spore'));\n          }\n        }\n      };\n      walkUpdate(sporesDir);\n\n      // Legacy: update wikilink references in Markdown files (pre-SQLite migration): [[memories/...]] → [[spores/...]]\n      const walkLinks = (dir: string): void => {\n        for (const entry of fs.readdirSync(dir, { withFileTypes: true })) {\n          const fullPath = path.join(dir, entry.name);\n          if (entry.isDirectory()) { walkLinks(fullPath); continue; }\n          if (!entry.name.endsWith('.md')) continue;\n          const content = fs.readFileSync(fullPath, 'utf-8');\n          if (content.includes('memories/')) {\n            fs.writeFileSync(fullPath, content.replace(/memories\\//g, 'spores/'));\n          }\n        }\n      };\n      walkLinks(vaultDir);\n    },\n  },\n  {\n    version: 2,\n    name: 'consolidation-boolean-to-object',\n    migrate: (doc) => {\n      const digest = doc.digest as Record<string, unknown> | undefined;\n      if (!digest) return;\n\n      const consolidation = digest.consolidation;\n      if (typeof consolidation === 'boolean') {\n        digest.consolidation = { enabled: consolidation, max_tokens: 2048 };\n      }\n    },\n  },\n  {\n    version: 3,\n    name: 'schedule-to-task-level',\n    migrate(doc: Record<string, unknown>, _vaultDir: string): void {\n      const agent = (doc.agent ?? {}) as Record<string, unknown>;\n      const skills = (doc.skills ?? {}) as Record<string, unknown>;\n      const tasks = ((agent.tasks ?? {}) as Record<string, Record<string, unknown>>);\n\n      /** Default interval for full-intelligence task (5 minutes). */\n      const DEFAULT_INTELLIGENCE_INTERVAL_SECONDS = 300;\n\n      const VALID_SCHEDULE_STATES = ['active', 'idle', 'sleep'] as const;\n\n      // Migrate agent.auto_run + interval_seconds → full-intelligence schedule\n      if ('auto_run' in agent || 'interval_seconds' in agent) {\n        const fiTask = tasks['full-intelligence'] ?? {};\n        fiTask.schedule = {\n          enabled: agent.auto_run ?? true,\n          intervalSeconds: agent.interval_seconds ?? DEFAULT_INTELLIGENCE_INTERVAL_SECONDS,\n        };\n        tasks['full-intelligence'] = fiTask;\n        delete agent.auto_run;\n        delete agent.interval_seconds;\n      }\n\n      // Migrate skills.auto_survey → skill-survey schedule\n      if ('auto_survey' in skills) {\n        const ssTask = tasks['skill-survey'] ?? {};\n        ssTask.schedule = {\n          enabled: skills.auto_survey ?? false,\n        };\n        tasks['skill-survey'] = ssTask;\n        delete skills.auto_survey;\n      }\n\n      // Migrate skills.auto_evolve + evolve_cadence → skill-evolve schedule\n      if ('auto_evolve' in skills || 'evolve_cadence' in skills) {\n        const seTask = tasks['skill-evolve'] ?? {};\n        const schedule: Record<string, unknown> = {\n          enabled: skills.auto_evolve ?? false,\n        };\n        if ('evolve_cadence' in skills) {\n          const cadence = String(skills.evolve_cadence);\n          schedule.runIn = VALID_SCHEDULE_STATES.includes(cadence as typeof VALID_SCHEDULE_STATES[number])\n            ? [cadence]\n            : ['idle']; // fallback to safe default\n        }\n        seTask.schedule = schedule;\n        tasks['skill-evolve'] = seTask;\n        delete skills.auto_evolve;\n        delete skills.evolve_cadence;\n      }\n\n      // Write back tasks if any were created\n      if (Object.keys(tasks).length > 0) {\n        agent.tasks = tasks;\n      }\n      doc.agent = agent;\n      doc.skills = skills;\n    },\n  },\n  {\n    version: 4,\n    name: 'rename-cloud-provider-to-anthropic',\n    migrate(doc: Record<string, unknown>, _vaultDir: string): void {\n      // Rename `provider.type: cloud` -> `provider.type: anthropic` everywhere\n      // it appears in the agent config: global default, per-task, per-phase.\n      const renameProvider = (provider: unknown): void => {\n        if (\n          provider &&\n          typeof provider === 'object' &&\n          (provider as Record<string, unknown>).type === 'cloud'\n        ) {\n          (provider as Record<string, unknown>).type = 'anthropic';\n        }\n      };\n\n      const agent = doc.agent as Record<string, unknown> | undefined;\n      if (!agent) return;\n\n      // Global default provider\n      renameProvider(agent.provider);\n\n      // Per-task overrides\n      const tasks = agent.tasks as Record<string, Record<string, unknown>> | undefined;\n      if (tasks) {\n        for (const taskConfig of Object.values(tasks)) {\n          renameProvider(taskConfig.provider);\n\n          // Per-phase overrides within a task\n          const phases = taskConfig.phases as Record<string, Record<string, unknown>> | undefined;\n          if (phases) {\n            for (const phaseConfig of Object.values(phases)) {\n              renameProvider(phaseConfig.provider);\n            }\n          }\n        }\n      }\n    },\n  },\n];\n\n/** Current migration version — the highest version in MIGRATIONS. */\nexport const CURRENT_MIGRATION_VERSION = MIGRATIONS[MIGRATIONS.length - 1]?.version ?? 0;\n\n/**\n * Run all pending migrations on the raw config doc.\n * Returns true if any migrations ran (caller should reindex).\n */\nexport function runMigrations(\n  doc: Record<string, unknown>,\n  vaultDir: string,\n  log?: (message: string) => void,\n): boolean {\n  const currentVersion = (doc.config_version as number) ?? 0;\n  let ran = false;\n\n  for (const migration of MIGRATIONS) {\n    if (migration.version <= currentVersion) continue;\n\n    migration.migrate(doc, vaultDir);\n    doc.config_version = migration.version;\n    ran = true;\n  }\n\n  if (ran) {\n    const from = currentVersion;\n    const to = (doc.config_version as number) ?? 0;\n    log?.(`Migrated config from v${from} to v${to}`);\n  }\n\n  return 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package/dist/{chunk-N6JNOSBQ.js → chunk-XZWFMMJR.js}

@@ -1,13 +1,13 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   getPluginVersion
-} from "./chunk-LA7NDX3J.js";
+} from "./chunk-SI5BBQAT.js";
 import {
   DAEMON_CLIENT_TIMEOUT_MS,
   DAEMON_HEALTH_CHECK_TIMEOUT_MS,
   DAEMON_HEALTH_RETRY_DELAYS,
   DAEMON_STALE_GRACE_PERIOD_MS
-} from "./chunk-6SDC6V3N.js";
+} from "./chunk-7DAH5GLC.js";
 
 // src/hooks/client.ts
 import fs from "fs";
@@ -185,4 +185,4 @@ export {
   resolveCliEntryPath,
   DaemonClient
 };
-//# sourceMappingURL=chunk-N6JNOSBQ.js.map
+//# sourceMappingURL=chunk-XZWFMMJR.js.map

package/dist/{chunk-UDBCAFXS.js → chunk-ZSJPI5MS.js}

@@ -2,7 +2,7 @@ import { createRequire as __cr } from 'node:module'; const require = __cr(import
 import {
   getTeamMachineId,
   syncRow
-} from "./chunk-KKEMVH6D.js";
+} from "./chunk-C3C5QVLK.js";
 import {
   getDatabase
 } from "./chunk-MYX5NCRH.js";
@@ -183,4 +183,4 @@ export {
   listSporeIdsSince,
   updateSporeStatus
 };
-//# sourceMappingURL=chunk-UDBCAFXS.js.map
+//# sourceMappingURL=chunk-ZSJPI5MS.js.map

package/dist/{cli-353VNZIY.js → cli-WJVYP2QT.js}

@@ -2,18 +2,18 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   loadEnv
-} from "./chunk-XQHL4GMO.js";
+} from "./chunk-CTF7TQMJ.js";
 import "./chunk-SAKJMNSR.js";
 import "./chunk-VVGZL2HX.js";
-import "./chunk-DKSQMH5X.js";
+import "./chunk-ML6GTPZU.js";
 import "./chunk-MYX5NCRH.js";
 import {
   resolveVaultDir
 } from "./chunk-5ZT2Q6P5.js";
-import "./chunk-N6JNOSBQ.js";
-import "./chunk-LA7NDX3J.js";
+import "./chunk-XZWFMMJR.js";
+import "./chunk-SI5BBQAT.js";
 import "./chunk-LPUQPDC2.js";
-import "./chunk-6SDC6V3N.js";
+import "./chunk-7DAH5GLC.js";
 import "./chunk-E7NUADTQ.js";
 import "./chunk-PZUWP5VK.js";
 
@@ -55,29 +55,29 @@ async function main() {
     process.stdout.write(USAGE);
     return;
   }
-  if (cmd === "init") return (await import("./init-XR2JZWY2.js")).run(args);
-  if (cmd === "detect-providers") return (await import("./detect-providers-OE6HWW3M.js")).run(args);
+  if (cmd === "init") return (await import("./init-BHVQAQ27.js")).run(args);
+  if (cmd === "detect-providers") return (await import("./detect-providers-C64L3QET.js")).run(args);
   if (cmd === "version" || cmd === "--version" || cmd === "-v") {
-    const { getPluginVersion } = await import("./version-OHJ5ZLHX.js");
+    const { getPluginVersion } = await import("./version-A72TAL2J.js");
     console.log(getPluginVersion());
     return;
   }
-  if (cmd === "mcp") return (await import("./server-LXUA7XUQ.js")).main();
+  if (cmd === "mcp") return (await import("./server-XMWJ4GF7.js")).main();
   if (cmd === "hook") {
     const hookName = args[0];
     const HOOK_DISPATCH = {
-      "session-start": () => import("./session-start-3STH4HFL.js"),
-      "session-end": () => import("./session-end-4Y5VY4OI.js"),
-      "stop": () => import("./stop-L7BLMHUD.js"),
-      "user-prompt-submit": () => import("./user-prompt-submit-4J7ZW6X3.js"),
-      "post-tool-use": () => import("./post-tool-use-5WLLRGZ5.js"),
-      "post-tool-use-failure": () => import("./post-tool-use-failure-6C6HSBHI.js"),
-      "subagent-start": () => import("./subagent-start-AIEFG4HA.js"),
-      "subagent-stop": () => import("./subagent-stop-TZ62BSNI.js"),
-      "stop-failure": () => import("./stop-failure-P5MYHGAZ.js"),
-      "task-completed": () => import("./task-completed-ZKVCUBCP.js"),
-      "pre-compact": () => import("./pre-compact-Z4E4JLAK.js"),
-      "post-compact": () => import("./post-compact-WPS4SONO.js")
+      "session-start": () => import("./session-start-PJLJDVJJ.js"),
+      "session-end": () => import("./session-end-TI3ILRBC.js"),
+      "stop": () => import("./stop-47BJ42EO.js"),
+      "user-prompt-submit": () => import("./user-prompt-submit-ADZ4NTVO.js"),
+      "post-tool-use": () => import("./post-tool-use-ICGFXDVY.js"),
+      "post-tool-use-failure": () => import("./post-tool-use-failure-C7TLH3XQ.js"),
+      "subagent-start": () => import("./subagent-start-SPTKQRHU.js"),
+      "subagent-stop": () => import("./subagent-stop-UU75BYLC.js"),
+      "stop-failure": () => import("./stop-failure-VU5BTLWX.js"),
+      "task-completed": () => import("./task-completed-MVDO7TZF.js"),
+      "pre-compact": () => import("./pre-compact-IF7K4TQK.js"),
+      "post-compact": () => import("./post-compact-QIBMEWL3.js")
     };
     const loader = HOOK_DISPATCH[hookName];
     if (!loader) {
@@ -86,13 +86,13 @@ async function main() {
     }
     return (await loader()).main();
   }
-  if (cmd === "daemon") return (await import("./main-6DGPZXRF.js")).main();
+  if (cmd === "daemon") return (await import("./main-YFVBIRRK.js")).main();
   if (cmd === "doctor") {
     const vaultDir2 = resolveVaultDir();
-    return (await import("./doctor-RYFP7ABA.js")).run(args, vaultDir2);
+    return (await import("./doctor-XEPBNHM3.js")).run(args, vaultDir2);
   }
-  if (cmd === "update") return (await import("./update-P7GIQLIV.js")).run(args);
-  if (cmd === "remove") return (await import("./remove-B2PFVQXK.js")).run(args);
+  if (cmd === "update") return (await import("./update-DA7VEXOS.js")).run(args);
+  if (cmd === "remove") return (await import("./remove-FBGM2QVJ.js")).run(args);
   const vaultDir = resolveVaultDir();
   if (!fs.existsSync(path.join(vaultDir, "myco.yaml"))) {
     console.error(`No myco.yaml found in ${vaultDir}. Run 'myco init' first.`);
@@ -100,37 +100,37 @@ async function main() {
   }
   switch (cmd) {
     case "config":
-      return (await import("./config-K3CJEFFO.js")).run(args, vaultDir);
+      return (await import("./config-ZQIMG3FB.js")).run(args, vaultDir);
     case "verify":
-      return (await import("./verify-PSERIZPF.js")).run(args, vaultDir);
+      return (await import("./verify-QYSERHF7.js")).run(args, vaultDir);
     case "stats":
-      return (await import("./stats-3NW7PGQK.js")).run(args, vaultDir);
+      return (await import("./stats-BISBIBXZ.js")).run(args, vaultDir);
     case "search":
-      return (await import("./search-ERTCTAQ3.js")).run(args, vaultDir);
+      return (await import("./search-NN5FC4Z6.js")).run(args, vaultDir);
     case "vectors":
-      return (await import("./search-ERTCTAQ3.js")).runVectors(args, vaultDir);
+      return (await import("./search-NN5FC4Z6.js")).runVectors(args, vaultDir);
     case "session":
-      return (await import("./session-433T6V3C.js")).run(args, vaultDir);
+      return (await import("./session-GLPAFYPO.js")).run(args, vaultDir);
     case "setup-llm":
-      return (await import("./setup-llm-UBBSQWX5.js")).run(args, vaultDir);
+      return (await import("./setup-llm-AQSWLXCZ.js")).run(args, vaultDir);
     case "setup-digest":
       return (await import("./setup-digest-4KDSXAIV.js")).run(args, vaultDir);
     case "agent":
-      return (await import("./agent-run-BGW4TY3D.js")).run(args, vaultDir);
+      return (await import("./agent-run-7AYHXIEF.js")).run(args, vaultDir);
     case "task":
-      return (await import("./agent-tasks-XUJ6FTPL.js")).run(args, vaultDir);
+      return (await import("./agent-tasks-UUIFKBD4.js")).run(args, vaultDir);
     case "team": {
       const sub = args[0];
-      if (sub === "init") return (await import("./team-WHZW6IFU.js")).teamInit(vaultDir);
-      if (sub === "upgrade") return (await import("./team-WHZW6IFU.js")).teamUpgrade(vaultDir);
+      if (sub === "init") return (await import("./team-7X64J4Y6.js")).teamInit(vaultDir);
+      if (sub === "upgrade") return (await import("./team-7X64J4Y6.js")).teamUpgrade(vaultDir);
       console.error("Usage: myco team <init|upgrade>");
       process.exit(1);
       break;
     }
     case "open":
-      return (await import("./open-P7YEH7UJ.js")).run(args, vaultDir);
+      return (await import("./open-2U7ZRGA3.js")).run(args, vaultDir);
     case "restart":
-      return (await import("./restart-XAJDOL3E.js")).run(args, vaultDir);
+      return (await import("./restart-TQEECRNW.js")).run(args, vaultDir);
     case "logs":
       return (await import("./logs-TMKNLSJY.js")).run(args, vaultDir);
     default:
@@ -143,4 +143,4 @@ main().catch((err) => {
   console.error(`myco: ${err.message}`);
   process.exit(1);
 });
-//# sourceMappingURL=cli-353VNZIY.js.map
+//# sourceMappingURL=cli-WJVYP2QT.js.map

package/dist/{client-7KJ453V4.js → client-LZ3ZR4HC.js}

@@ -2,14 +2,14 @@ import { createRequire as __cr } from 'node:module'; const require = __cr(import
 import {
   DaemonClient,
   resolveCliEntryPath
-} from "./chunk-N6JNOSBQ.js";
-import "./chunk-LA7NDX3J.js";
+} from "./chunk-XZWFMMJR.js";
+import "./chunk-SI5BBQAT.js";
 import "./chunk-LPUQPDC2.js";
-import "./chunk-6SDC6V3N.js";
+import "./chunk-7DAH5GLC.js";
 import "./chunk-E7NUADTQ.js";
 import "./chunk-PZUWP5VK.js";
 export {
   DaemonClient,
   resolveCliEntryPath
 };
-//# sourceMappingURL=client-7KJ453V4.js.map
+//# sourceMappingURL=client-LZ3ZR4HC.js.map

package/dist/{config-K3CJEFFO.js → config-ZQIMG3FB.js}

@@ -1,12 +1,12 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   withValue
-} from "./chunk-SODRR3HE.js";
+} from "./chunk-GFR542SM.js";
 import {
   loadConfig,
   updateConfig
-} from "./chunk-FEX6ALLH.js";
-import "./chunk-6SDC6V3N.js";
+} from "./chunk-XD3NEN3Q.js";
+import "./chunk-7DAH5GLC.js";
 import "./chunk-E7NUADTQ.js";
 import "./chunk-D7TYRPRM.js";
 import "./chunk-E4VLWIJC.js";
@@ -87,4 +87,4 @@ function parseValue(raw) {
 export {
   run
 };
-//# sourceMappingURL=config-K3CJEFFO.js.map
+//# sourceMappingURL=config-ZQIMG3FB.js.map

package/dist/{detect-providers-OE6HWW3M.js → detect-providers-C64L3QET.js}

@@ -1,9 +1,9 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   checkLocalProvider
-} from "./chunk-CPL76CYD.js";
-import "./chunk-DKSQMH5X.js";
-import "./chunk-6SDC6V3N.js";
+} from "./chunk-DT42247G.js";
+import "./chunk-ML6GTPZU.js";
+import "./chunk-7DAH5GLC.js";
 import "./chunk-E7NUADTQ.js";
 import "./chunk-PZUWP5VK.js";
 
@@ -23,4 +23,4 @@ async function run(_args) {
 export {
   run
 };
-//# sourceMappingURL=detect-providers-OE6HWW3M.js.map
+//# sourceMappingURL=detect-providers-C64L3QET.js.map

package/dist/{doctor-RYFP7ABA.js → doctor-XEPBNHM3.js}

@@ -1,17 +1,17 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   isProcessAlive
-} from "./chunk-XQHL4GMO.js";
+} from "./chunk-CTF7TQMJ.js";
 import "./chunk-SAKJMNSR.js";
 import {
   MYCO_MCP_SERVER_NAME
 } from "./chunk-VVGZL2HX.js";
-import "./chunk-DKSQMH5X.js";
+import "./chunk-ML6GTPZU.js";
 import "./chunk-MYX5NCRH.js";
-import "./chunk-N6JNOSBQ.js";
-import "./chunk-LA7NDX3J.js";
+import "./chunk-XZWFMMJR.js";
+import "./chunk-SI5BBQAT.js";
 import "./chunk-LPUQPDC2.js";
-import "./chunk-6SDC6V3N.js";
+import "./chunk-7DAH5GLC.js";
 import "./chunk-E7NUADTQ.js";
 import "./chunk-PZUWP5VK.js";
 
@@ -29,7 +29,7 @@ async function checkVault(vaultDir) {
     return { check: { name: "Vault", status: "fail", detail: `${CONFIG_FILENAME} not found in ${vaultDir}`, fixable: false }, config: null };
   }
   try {
-    const { loadConfig } = await import("./loader-AVWL7PNO.js");
+    const { loadConfig } = await import("./loader-SHRKUKOS.js");
     const config = loadConfig(vaultDir);
     return { check: { name: "Vault", status: "ok", detail: `.myco/ (v${config.version})`, fixable: false }, config };
   } catch (err) {
@@ -64,11 +64,11 @@ async function checkIntelligence(config) {
       return { name: "Intelligence", status: "warn", detail: "No agent provider configured \u2014 run `myco init` to set up", fixable: false };
     }
     const label = `${provider.type}${provider.model ? ` / ${provider.model}` : ""}`;
-    if (provider.type === "cloud") {
+    if (provider.type === "anthropic") {
       return { name: "Intelligence", status: "ok", detail: `${label} (SDK handles auth)`, fixable: false };
     }
     if (provider.type === "ollama" || provider.type === "lmstudio") {
-      const { checkLocalProvider } = await import("./provider-check-CESRPIY5.js");
+      const { checkLocalProvider } = await import("./provider-check-LTLQ6BUZ.js");
       const status = await checkLocalProvider(provider.type, provider.base_url);
       if (!status.available) {
         return { name: "Intelligence", status: "warn", detail: `${label} (not reachable)`, fixable: false };
@@ -82,7 +82,7 @@ async function checkIntelligence(config) {
 }
 async function checkEmbeddings(config) {
   try {
-    const { createEmbeddingProvider } = await import("./llm-PGETQHZ2.js");
+    const { createEmbeddingProvider } = await import("./llm-KTD6SR55.js");
     const provider = createEmbeddingProvider(config.embedding);
     const available = await provider.isAvailable();
     const label = `${config.embedding.provider} / ${config.embedding.model}`;
@@ -97,7 +97,7 @@ async function checkEmbeddings(config) {
 async function checkAgents(vaultDir, config) {
   try {
     const { detectSymbionts } = await import("./detect-NJ2OREDP.js");
-    const { getEnabledSymbiontNames } = await import("./loader-AVWL7PNO.js");
+    const { getEnabledSymbiontNames } = await import("./loader-SHRKUKOS.js");
     const projectRoot = path.dirname(vaultDir);
     const detected = detectSymbionts(projectRoot);
     const enabledNames = config ? getEnabledSymbiontNames(config) : null;
@@ -271,4 +271,4 @@ export {
   run,
   runChecks
 };
-//# sourceMappingURL=doctor-RYFP7ABA.js.map
+//# sourceMappingURL=doctor-XEPBNHM3.js.map

package/dist/doctor-XEPBNHM3.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/cli/doctor.ts"],"sourcesContent":["/**\n * CLI: myco doctor — check vault health and auto-repair fixable issues.\n *\n * Runs a series of health checks against the vault directory and reports\n * status. With --fix, attempts to repair issues it can handle automatically.\n */\n\nimport fs from 'node:fs';\nimport path from 'node:path';\nimport { isProcessAlive } from './shared.js';\nimport { MYCO_MCP_SERVER_NAME } from '../symbionts/installer.js';\n\n// --- Named constants (no magic literals) ---\n\n\n/** Filename of the vault config file. */\nconst CONFIG_FILENAME = 'myco.yaml';\n\n/** Filename of the daemon state file. */\nconst DAEMON_STATE_FILENAME = 'daemon.json';\n\n/** Filename of the SQLite database. */\nconst DB_FILENAME = 'myco.db';\n\n/** Column width for the check name in output. */\nconst NAME_COL_WIDTH = 17;\n\n/** Prefix for indented continuation lines (e.g. multi-line agent output). */\nconst CONTINUATION_INDENT = ' '.repeat(NAME_COL_WIDTH);\n\n// --- Types ---\n\nexport interface DoctorCheck {\n  name: string;\n  status: 'ok' | 'fail' | 'warn';\n  detail: string;\n  fixable: boolean;\n}\n\n// --- Checks ---\n\n/** Check that myco.yaml exists and parses. Returns the parsed config on success. */\nasync function checkVault(vaultDir: string): Promise<{ check: DoctorCheck; config: import('../config/schema.js').MycoConfig | null }> {\n  const configPath = path.join(vaultDir, CONFIG_FILENAME);\n  if (!fs.existsSync(configPath)) {\n    return { check: { name: 'Vault', status: 'fail', detail: `${CONFIG_FILENAME} not found in ${vaultDir}`, fixable: false }, config: null };\n  }\n  try {\n    const { loadConfig } = await import('../config/loader.js');\n    const config = loadConfig(vaultDir);\n    return { check: { name: 'Vault', status: 'ok', detail: `.myco/ (v${config.version})`, fixable: false }, config };\n  } catch (err) {\n    return { check: { name: 'Vault', status: 'fail', detail: `${CONFIG_FILENAME} parse error: ${(err as Error).message}`, fixable: false }, config: null };\n  }\n}\n\n/** Check that the SQLite database exists and can be queried. */\nasync function checkDatabase(vaultDir: string): Promise<DoctorCheck> {\n  const dbPath = path.join(vaultDir, DB_FILENAME);\n  if (!fs.existsSync(dbPath)) {\n    return { name: 'Database', status: 'fail', detail: `${DB_FILENAME} not found — run \\`myco init\\``, fixable: false };\n  }\n  try {\n    const { initDatabase, closeDatabase, vaultDbPath } = await import('../db/client.js');\n    const db = initDatabase(vaultDbPath(vaultDir));\n    const row = db.prepare('SELECT count(*) AS cnt FROM sessions').get() as { cnt: number } | undefined;\n    const count = row?.cnt ?? 0;\n    closeDatabase();\n    return { name: 'Database', status: 'ok', detail: `${DB_FILENAME} (${count.toLocaleString()} sessions)`, fixable: false };\n  } catch (err) {\n    // Ensure DB is closed even on error\n    try { const { closeDatabase } = await import('../db/client.js'); closeDatabase(); } catch { /* ignore */ }\n    return { name: 'Database', status: 'fail', detail: `Database error: ${(err as Error).message}`, fixable: false };\n  }\n}\n\n/** Check that the intelligence (agent) provider is configured. */\nasync function checkIntelligence(config: import('../config/schema.js').MycoConfig): Promise<DoctorCheck> {\n  try {\n    const provider = config.agent.provider;\n\n    if (!provider) {\n      return { name: 'Intelligence', status: 'warn', detail: 'No agent provider configured — run `myco init` to set up', fixable: false };\n    }\n\n    const label = `${provider.type}${provider.model ? ` / ${provider.model}` : ''}`;\n\n    if (provider.type === 'anthropic') {\n      return { name: 'Intelligence', status: 'ok', detail: `${label} (SDK handles auth)`, fixable: false };\n    }\n\n    // Local provider — check reachability\n    if (provider.type === 'ollama' || provider.type === 'lmstudio') {\n      const { checkLocalProvider } = await import('../intelligence/provider-check.js');\n      const status = await checkLocalProvider(provider.type, provider.base_url);\n      if (!status.available) {\n        return { name: 'Intelligence', status: 'warn', detail: `${label} (not reachable)`, fixable: false };\n      }\n      return { name: 'Intelligence', status: 'ok', detail: label, fixable: false };\n    }\n\n    return { name: 'Intelligence', status: 'ok', detail: label, fixable: false };\n  } catch (err) {\n    return { name: 'Intelligence', status: 'fail', detail: `Intelligence check failed: ${(err as Error).message}`, fixable: false };\n  }\n}\n\n/** Check that the embedding provider is configured and reachable. */\nasync function checkEmbeddings(config: import('../config/schema.js').MycoConfig): Promise<DoctorCheck> {\n  try {\n    const { createEmbeddingProvider } = await import('../intelligence/llm.js');\n    const provider = createEmbeddingProvider(config.embedding);\n    const available = await provider.isAvailable();\n    const label = `${config.embedding.provider} / ${config.embedding.model}`;\n    if (available) {\n      return { name: 'Embeddings', status: 'ok', detail: label, fixable: false };\n    }\n    return { name: 'Embeddings', status: 'warn', detail: `${label} (not reachable)`, fixable: false };\n  } catch (err) {\n    return { name: 'Embeddings', status: 'fail', detail: `Embedding check failed: ${(err as Error).message}`, fixable: false };\n  }\n}\n\n/** Check symbiont detection and registration status. */\nasync function checkAgents(vaultDir: string, config: import('../config/schema.js').MycoConfig | null): Promise<DoctorCheck[]> {\n  try {\n    const { detectSymbionts } = await import('../symbionts/detect.js');\n    const { getEnabledSymbiontNames } = await import('../config/loader.js');\n    const projectRoot = path.dirname(vaultDir);\n    const detected = detectSymbionts(projectRoot);\n\n    const enabledNames = config ? getEnabledSymbiontNames(config) : null;\n\n    if (detected.length === 0 && !enabledNames) {\n      return [{ name: 'Agents', status: 'warn', detail: 'No symbionts detected', fixable: false }];\n    }\n\n    const checks: DoctorCheck[] = [];\n    for (const d of detected) {\n      const registered = isSymbiontRegistered(d, projectRoot);\n      const enabled = enabledNames ? enabledNames.has(d.manifest.name) : registered;\n\n      if (enabled && registered) {\n        checks.push({\n          name: checks.length === 0 ? 'Agents' : '',\n          status: 'ok',\n          detail: `${d.manifest.displayName} (enabled, registered)`,\n          fixable: false,\n        });\n      } else if (enabled && !registered) {\n        checks.push({\n          name: checks.length === 0 ? 'Agents' : '',\n          status: 'warn',\n          detail: `${d.manifest.displayName} (enabled but not registered — run \\`myco update\\`)`,\n          fixable: false,\n        });\n      } else if (!enabled && registered) {\n        checks.push({\n          name: checks.length === 0 ? 'Agents' : '',\n          status: 'warn',\n          detail: `${d.manifest.displayName} (registered but not enabled — run \\`myco remove --symbiont ${d.manifest.name}\\`)`,\n          fixable: false,\n        });\n      } else {\n        // Detected but neither enabled nor registered\n        checks.push({\n          name: checks.length === 0 ? 'Agents' : '',\n          status: 'ok',\n          detail: `${d.manifest.displayName} (detected, not enabled)`,\n          fixable: false,\n        });\n      }\n    }\n\n    if (checks.length === 0) {\n      return [{ name: 'Agents', status: 'warn', detail: 'No symbionts detected or enabled', fixable: false }];\n    }\n\n    return checks;\n  } catch (err) {\n    return [{ name: 'Agents', status: 'fail', detail: `Agent check failed: ${(err as Error).message}`, fixable: false }];\n  }\n}\n\n/** Check if a symbiont has the Myco MCP server registered. */\nfunction isSymbiontRegistered(\n  d: import('../symbionts/detect.js').DetectedSymbiont,\n  projectRoot: string,\n): boolean {\n  try {\n    const mcpTarget = d.manifest.registration?.mcpTarget;\n    if (!mcpTarget) return false;\n\n    const mcpFile = path.join(projectRoot, mcpTarget);\n    const raw = fs.readFileSync(mcpFile, 'utf-8');\n\n    // TOML: check for section header\n    if (mcpTarget.endsWith('.toml')) {\n      return raw.includes(`[mcp_servers.${MYCO_MCP_SERVER_NAME}]`);\n    }\n\n    // JSON: check for server entry under the configured key (defaults to 'mcpServers').\n    // opencode uses 'mcp' — without the manifest lookup, doctor reports opencode as\n    // unregistered even after a successful install.\n    const config = JSON.parse(raw) as Record<string, unknown>;\n    const serversKey = d.manifest.registration?.mcpServersKey ?? 'mcpServers';\n    const servers = config[serversKey] as Record<string, unknown> | undefined;\n    return !!servers?.[MYCO_MCP_SERVER_NAME];\n  } catch { /* config missing or malformed */ }\n  return false;\n}\n\n/** Check the daemon state file and process liveness. */\nasync function checkDaemon(vaultDir: string): Promise<DoctorCheck> {\n  const daemonFile = path.join(vaultDir, DAEMON_STATE_FILENAME);\n  if (!fs.existsSync(daemonFile)) {\n    return { name: 'Daemon', status: 'warn', detail: 'Not running (no daemon.json)', fixable: false };\n  }\n  try {\n    const state = JSON.parse(fs.readFileSync(daemonFile, 'utf-8')) as { pid?: number; port?: number };\n    if (!state.pid) {\n      return { name: 'Daemon', status: 'warn', detail: 'daemon.json exists but no PID', fixable: true };\n    }\n    if (isProcessAlive(state.pid)) {\n      return { name: 'Daemon', status: 'ok', detail: `PID ${state.pid}, port ${state.port ?? 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