@goondocks/myco 0.14.4 → 0.15.1

package/dist/{init-RHQUINC2.js → init-PHQAQANR.js}

@@ -1,45 +1,45 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
-import {
-  writeSecret
-} from "./chunk-RJMXDUMA.js";
 import {
   VAULT_GITIGNORE,
   registerSymbionts
-} from "./chunk-BCKYVLUZ.js";
+} from "./chunk-6GG2IVNV.js";
 import {
   parseStringFlag
 } from "./chunk-SAKJMNSR.js";
-import "./chunk-TNCBMGWB.js";
+import {
+  writeSecret
+} from "./chunk-RJMXDUMA.js";
+import "./chunk-X5IXK5KO.js";
 import "./chunk-HHZ3RTEI.js";
 import {
   createSchema
-} from "./chunk-4VF6KQ2Z.js";
+} from "./chunk-DJQOYEK3.js";
 import {
   MycoConfigSchema,
   saveConfig,
   updateConfig
-} from "./chunk-PSYLKCWQ.js";
+} from "./chunk-4BQ5QE76.js";
 import {
   closeDatabase,
   initDatabase,
   vaultDbPath
 } from "./chunk-MYX5NCRH.js";
-import "./chunk-UZ5Y6XMP.js";
-import "./chunk-TFBAV3PV.js";
+import {
+  resolveVaultDir
+} from "./chunk-5ZT2Q6P5.js";
+import "./chunk-4O3QNM5I.js";
+import "./chunk-BFM6AM6R.js";
 import {
   detectSymbionts,
   loadManifests,
   resolvePackageRoot
-} from "./chunk-QFMBZ72S.js";
+} from "./chunk-SV6UCB2Z.js";
 import "./chunk-LPUQPDC2.js";
 import "./chunk-TRA3R4EC.js";
-import "./chunk-S6I62FAH.js";
+import "./chunk-CUADDHHU.js";
 import "./chunk-D7TYRPRM.js";
 import "./chunk-E4VLWIJC.js";
-import "./chunk-KH64DHOY.js";
-import {
-  resolveVaultDir
-} from "./chunk-JTYZRPX5.js";
+import "./chunk-GDY63YAW.js";
 import "./chunk-PZUWP5VK.js";
 
 // src/cli/init.ts
@@ -52,7 +52,7 @@ async function run(args) {
   const nonInteractive = args.includes("--non-interactive");
   const isInteractive = !nonInteractive && !!process.stdin.isTTY;
   if (isInteractive) {
-    const { printBanner } = await import("./init-wizard-ZB3JRDLE.js");
+    const { printBanner } = await import("./init-wizard-RFD46XAJ.js");
     printBanner();
   }
   const vaultDir = vaultPath ? vaultPath.startsWith("~/") ? path.join(os.homedir(), vaultPath.slice(2)) : path.resolve(vaultPath) : path.join(resolveVaultDir());
@@ -67,7 +67,7 @@ async function run(args) {
   let shouldRunWizard = false;
   if (isInteractive && !hasEmbeddingFlags) {
     if (alreadyInitialized) {
-      const { loadConfig } = await import("./loader-JQLO6K44.js");
+      const { loadConfig } = await import("./loader-WGDVRGLM.js");
       const config = loadConfig(vaultDir);
       const agentProvider = config.agent.provider;
       const embConfig = config.embedding;
@@ -82,7 +82,7 @@ async function run(args) {
     }
   }
   if (shouldRunWizard) {
-    const { runWizard, buildEmbeddingConfig, buildAgentConfig } = await import("./init-wizard-ZB3JRDLE.js");
+    const { runWizard, buildEmbeddingConfig, buildAgentConfig } = await import("./init-wizard-RFD46XAJ.js");
     const answers = await runWizard();
     wizardAnswers = answers;
     if (answers.embeddingProvider !== "skip") {
@@ -127,8 +127,8 @@ async function run(args) {
     console.log("  Updated myco.yaml");
   }
   if (wizardAnswers?.embeddingApiKey) {
-    const { OPENROUTER_API_KEY_ENV } = await import("./openrouter-RD2COFC7.js");
-    const { OPENAI_API_KEY_ENV } = await import("./openai-embeddings-5T5ZP7LO.js");
+    const { OPENROUTER_API_KEY_ENV } = await import("./openrouter-ELODIZRP.js");
+    const { OPENAI_API_KEY_ENV } = await import("./openai-embeddings-SEIV7AM3.js");
     const envVarName = wizardAnswers.embeddingProvider === "openrouter" ? OPENROUTER_API_KEY_ENV : OPENAI_API_KEY_ENV;
     writeSecret(vaultDir, envVarName, wizardAnswers.embeddingApiKey);
   }
@@ -136,6 +136,15 @@ async function run(args) {
   const allManifests = loadManifests();
   const detected = detectSymbionts(projectRoot);
   const detectedNames = new Set(detected.map((d) => d.manifest.name));
+  let existingSymbionts;
+  if (alreadyInitialized && isInteractive) {
+    try {
+      const { loadConfig } = await import("./loader-WGDVRGLM.js");
+      const existing = loadConfig(vaultDir);
+      existingSymbionts = existing.symbionts;
+    } catch {
+    }
+  }
   if (allManifests.length > 0) {
     let selectedManifests = allManifests.filter((m) => detectedNames.has(m.name));
     if (isInteractive) {
@@ -143,10 +152,11 @@ async function run(args) {
       const choices = allManifests.map((m) => {
         const det = detected.find((d) => d.manifest.name === m.name);
         const hint = det ? [det.binaryFound && "detected", det.configDirFound && `${m.configDir}/ exists`].filter(Boolean).join(", ") : "";
+        const checked = !!existingSymbionts?.[m.name]?.enabled;
         return {
           value: m.name,
           name: hint ? `${m.displayName} (${hint})` : m.displayName,
-          checked: detectedNames.has(m.name)
+          checked
         };
       });
       const selectedNames = await checkbox({
@@ -159,11 +169,19 @@ async function run(args) {
       }
     }
     if (selectedManifests.length > 0) {
+      const symbiontsConfig = {};
+      for (const m of selectedManifests) {
+        symbiontsConfig[m.name] = { enabled: true };
+      }
+      updateConfig(vaultDir, (config) => ({
+        ...config,
+        symbionts: symbiontsConfig
+      }));
       const pkgRoot = resolvePackageRoot();
       registerSymbionts(selectedManifests, projectRoot, pkgRoot, "Registered");
     }
   }
-  const { DaemonClient } = await import("./client-LRQMMKLP.js");
+  const { DaemonClient } = await import("./client-YNTTC75R.js");
   const client = new DaemonClient(vaultDir);
   const daemonHealthy = await client.ensureRunning();
   let daemonUrl = "";
@@ -193,4 +211,4 @@ async function run(args) {
 export {
   run
 };
-//# sourceMappingURL=init-RHQUINC2.js.map
+//# sourceMappingURL=init-PHQAQANR.js.map

package/dist/init-PHQAQANR.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/cli/init.ts"],"sourcesContent":["import { initDatabase, vaultDbPath, closeDatabase } from '../db/client.js';\nimport { createSchema } from '../db/schema.js';\nimport { resolveVaultDir } from '../vault/resolve.js';\nimport {\n  parseStringFlag,\n  VAULT_GITIGNORE,\n  registerSymbionts,\n} from './shared.js';\nimport { detectSymbionts, loadManifests, resolvePackageRoot } from '../symbionts/detect.js';\nimport { MycoConfigSchema } from '../config/schema.js';\nimport { updateConfig, saveConfig } from '../config/loader.js';\nimport { writeSecret } from '../config/secrets.js';\nimport fs from 'node:fs';\nimport path from 'node:path';\nimport os from 'node:os';\n\n/** Directories that must exist inside a vault for correct operation. */\nconst VAULT_REQUIRED_DIRS = ['buffer', 'attachments', 'logs'] as const;\n\nexport async function run(args: string[]): Promise<void> {\n  const vaultPath = parseStringFlag(args, '--vault');\n  const nonInteractive = args.includes('--non-interactive');\n  const isInteractive = !nonInteractive && !!process.stdin.isTTY;\n\n  // Show banner in interactive mode\n  if (isInteractive) {\n    const { printBanner } = await import('./init-wizard.js');\n    printBanner();\n  }\n\n  // Resolve vault directory\n  const vaultDir = vaultPath\n    ? (vaultPath.startsWith('~/') ? path.join(os.homedir(), vaultPath.slice(2)) : path.resolve(vaultPath))\n    : path.join(resolveVaultDir());\n\n  const alreadyInitialized = fs.existsSync(path.join(vaultDir, 'myco.yaml'));\n\n  // --- Wizard: runs for both new and existing vaults ---\n\n  const embeddingProvider = parseStringFlag(args, '--embedding-provider');\n  const embeddingModel = parseStringFlag(args, '--embedding-model');\n  const embeddingUrl = parseStringFlag(args, '--embedding-url');\n  const hasEmbeddingFlags = !!(embeddingProvider || embeddingModel || embeddingUrl);\n\n  let wizardOverrides: Record<string, unknown> = {};\n  let agentOverrides: Record<string, unknown> | null = null;\n  let wizardAnswers: Awaited<ReturnType<typeof import('./init-wizard.js').runWizard>> | null = null;\n\n  // Determine if the wizard should run\n  let shouldRunWizard = false;\n  if (isInteractive && !hasEmbeddingFlags) {\n    if (alreadyInitialized) {\n      const { loadConfig } = await import('../config/loader.js');\n      const config = loadConfig(vaultDir);\n      const agentProvider = config.agent.provider;\n      const embConfig = config.embedding;\n\n      console.log(`  Vault: ${vaultDir}`);\n      console.log(`  Intelligence: ${agentProvider?.type ?? 'not configured'}${agentProvider?.model ? ` / ${agentProvider.model}` : ''}`);\n      console.log(`  Embeddings: ${embConfig.provider} / ${embConfig.model}`);\n      console.log('');\n\n      const { confirm } = await import('@inquirer/prompts');\n      shouldRunWizard = await confirm({ message: 'Reconfigure providers?', default: false });\n    } else {\n      shouldRunWizard = true;\n    }\n  }\n\n  if (shouldRunWizard) {\n    const { runWizard, buildEmbeddingConfig, buildAgentConfig } = await import('./init-wizard.js');\n    const answers = await runWizard();\n    wizardAnswers = answers;\n    if (answers.embeddingProvider !== 'skip') {\n      wizardOverrides = { ...buildEmbeddingConfig(answers) };\n    }\n    agentOverrides = buildAgentConfig(answers);\n  }\n\n  // --- Vault creation (new vaults only) ---\n\n  if (!alreadyInitialized) {\n    console.log(`Initializing Myco vault at ${vaultDir}`);\n\n    for (const dir of VAULT_REQUIRED_DIRS) {\n      fs.mkdirSync(path.join(vaultDir, dir), { recursive: true });\n    }\n\n    // Build embedding config from flags (flags take precedence over wizard)\n    const embeddingOverrides: Record<string, unknown> = { ...wizardOverrides };\n    if (embeddingProvider) embeddingOverrides.provider = embeddingProvider;\n    if (embeddingModel) embeddingOverrides.model = embeddingModel;\n    if (embeddingUrl) embeddingOverrides.base_url = embeddingUrl;\n\n    const config = MycoConfigSchema.parse({\n      version: 3,\n      ...(Object.keys(embeddingOverrides).length > 0 ? { embedding: embeddingOverrides } : {}),\n      ...(agentOverrides ? { agent: agentOverrides } : {}),\n    });\n\n    saveConfig(vaultDir, config);\n    fs.writeFileSync(path.join(vaultDir, '.gitignore'), VAULT_GITIGNORE, 'utf-8');\n\n    const db = initDatabase(vaultDbPath(vaultDir));\n    createSchema(db);\n    closeDatabase();\n  }\n\n  // --- Update existing vault config if wizard ran ---\n\n  if (alreadyInitialized && (Object.keys(wizardOverrides).length > 0 || agentOverrides)) {\n    updateConfig(vaultDir, (config) => {\n      let updated = config;\n      if (Object.keys(wizardOverrides).length > 0) {\n        // Full replacement — avoids stale fields (e.g., old base_url) leaking when switching providers\n        updated = { ...updated, embedding: wizardOverrides as typeof updated.embedding };\n      }\n      if (agentOverrides) {\n        updated = {\n          ...updated,\n          agent: { ...updated.agent, ...agentOverrides },\n        };\n      }\n      return updated;\n    });\n    console.log('  Updated myco.yaml');\n  }\n\n  // --- Store embedding API key in secrets.env ---\n\n  if (wizardAnswers?.embeddingApiKey) {\n    const { OPENROUTER_API_KEY_ENV } = await import('./providers/openrouter.js');\n    const { OPENAI_API_KEY_ENV } = await import('./providers/openai-embeddings.js');\n    const envVarName = wizardAnswers.embeddingProvider === 'openrouter'\n      ? OPENROUTER_API_KEY_ENV\n      : OPENAI_API_KEY_ENV;\n    writeSecret(vaultDir, envVarName, wizardAnswers.embeddingApiKey);\n  }\n\n  // --- Symbiont selection and registration ---\n\n  const projectRoot = path.dirname(vaultDir);\n  const allManifests = loadManifests();\n  const detected = detectSymbionts(projectRoot);\n  const detectedNames = new Set(detected.map((d) => d.manifest.name));\n\n  // Load existing symbiont config for pre-checking on re-init (interactive only)\n  let existingSymbionts: Record<string, { enabled: boolean }> | undefined;\n  if (alreadyInitialized && isInteractive) {\n    try {\n      const { loadConfig } = await import('../config/loader.js');\n      const existing = loadConfig(vaultDir);\n      existingSymbionts = existing.symbionts;\n    } catch { /* config not loadable — skip pre-check */ }\n  }\n\n  if (allManifests.length > 0) {\n    // Interactive: let user choose which agents to configure\n    let selectedManifests = allManifests.filter((m) => detectedNames.has(m.name));\n\n    if (isInteractive) {\n      const { checkbox } = await import('@inquirer/prompts');\n      const choices = allManifests.map((m) => {\n        const det = detected.find((d) => d.manifest.name === m.name);\n        const hint = det\n          ? [det.binaryFound && 'detected', det.configDirFound && `${m.configDir}/ exists`].filter(Boolean).join(', ')\n          : '';\n        // Pre-check from config on re-init; nothing pre-checked on first init\n        const checked = !!existingSymbionts?.[m.name]?.enabled;\n        return {\n          value: m.name,\n          name: hint ? `${m.displayName} (${hint})` : m.displayName,\n          checked,\n        };\n      });\n      const selectedNames = await checkbox({\n        message: 'Configure agents',\n        choices,\n      });\n      selectedManifests = allManifests.filter((m) => selectedNames.includes(m.name));\n      if (selectedManifests.length === 0) {\n        console.log('  Skipped agent configuration.');\n      }\n    }\n\n    if (selectedManifests.length > 0) {\n      const symbiontsConfig: Record<string, { enabled: boolean }> = {};\n      for (const m of selectedManifests) {\n        symbiontsConfig[m.name] = { enabled: true };\n      }\n      updateConfig(vaultDir, (config) => ({\n        ...config,\n        symbionts: symbiontsConfig,\n      }));\n\n      const pkgRoot = resolvePackageRoot();\n      registerSymbionts(selectedManifests, projectRoot, pkgRoot, 'Registered');\n    }\n  }\n\n  // --- Start daemon and show summary ---\n\n  const { DaemonClient } = await import('../hooks/client.js');\n  const client = new DaemonClient(vaultDir);\n  const daemonHealthy = await client.ensureRunning();\n\n  let daemonUrl = '';\n  if (daemonHealthy) {\n    try {\n      const daemonJson = JSON.parse(fs.readFileSync(path.join(vaultDir, 'daemon.json'), 'utf-8'));\n      daemonUrl = `http://localhost:${daemonJson.port}/`;\n    } catch { /* daemon.json not readable — skip URL */ }\n  }\n\n  console.log('');\n  if (!alreadyInitialized) {\n    console.log('=== Myco Vault Initialized ===');\n  } else {\n    console.log('=== Myco Updated ===');\n  }\n  console.log(`Project:  ${path.basename(projectRoot)}`);\n  console.log(`Vault:    ${vaultDir}`);\n  if (daemonUrl) {\n    console.log(`Dashboard: ${daemonUrl}`);\n  } else if (!daemonHealthy) {\n    console.log('Dashboard: daemon failed to start — run `myco doctor` to diagnose');\n  }\n  console.log('');\n  console.log('Start a coding session — Myco will begin capturing 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package/dist/{init-wizard-ZB3JRDLE.js → init-wizard-RFD46XAJ.js}

@@ -1,8 +1,4 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
-import {
-  LmStudioBackend,
-  OllamaBackend
-} from "./chunk-HHZ3RTEI.js";
 import {
   OpenRouterEmbeddingProvider
 } from "./chunk-RBFECYNA.js";
@@ -10,9 +6,13 @@ import {
   OpenAIEmbeddingProvider
 } from "./chunk-OKCSSDFC.js";
 import "./chunk-5YQ6VOFZ.js";
+import {
+  LmStudioBackend,
+  OllamaBackend
+} from "./chunk-HHZ3RTEI.js";
 import {
   getPluginVersion
-} from "./chunk-TFBAV3PV.js";
+} from "./chunk-BFM6AM6R.js";
 import "./chunk-LPUQPDC2.js";
 import {
   DEFAULT_OLLAMA_EMBEDDING_MODEL,
@@ -20,7 +20,7 @@ import {
   PROVIDER_DETECT_TIMEOUT_MS,
   RECOMMENDED_LOCAL_CONTEXT_WINDOW
 } from "./chunk-TRA3R4EC.js";
-import "./chunk-S6I62FAH.js";
+import "./chunk-CUADDHHU.js";
 import "./chunk-PZUWP5VK.js";
 
 // src/cli/init-wizard.ts
@@ -291,4 +291,4 @@ export {
   printBanner,
   runWizard
 };
-//# sourceMappingURL=init-wizard-ZB3JRDLE.js.map
+//# sourceMappingURL=init-wizard-RFD46XAJ.js.map

package/dist/{installer-25TSX4SR.js → installer-BTUNKWOU.js}

@@ -3,11 +3,11 @@ import {
   MYCO_MCP_SERVER_NAME,
   SymbiontInstaller,
   syncSkillSymlinks
-} from "./chunk-TNCBMGWB.js";
+} from "./chunk-X5IXK5KO.js";
 import "./chunk-PZUWP5VK.js";
 export {
   MYCO_MCP_SERVER_NAME,
   SymbiontInstaller,
   syncSkillSymlinks
 };
-//# sourceMappingURL=installer-25TSX4SR.js.map
+//# sourceMappingURL=installer-BTUNKWOU.js.map

package/dist/{llm-T3QVHC3Y.js → llm-D4VWYUK7.js}

@@ -2,16 +2,16 @@ import { createRequire as __cr } from 'node:module'; const require = __cr(import
 import {
   createEmbeddingProvider,
   createLlmProvider
-} from "./chunk-LD6U3L6O.js";
-import "./chunk-HHZ3RTEI.js";
+} from "./chunk-2QMDRZPJ.js";
 import "./chunk-RBFECYNA.js";
 import "./chunk-OKCSSDFC.js";
 import "./chunk-5YQ6VOFZ.js";
+import "./chunk-HHZ3RTEI.js";
 import "./chunk-TRA3R4EC.js";
-import "./chunk-S6I62FAH.js";
+import "./chunk-CUADDHHU.js";
 import "./chunk-PZUWP5VK.js";
 export {
   createEmbeddingProvider,
   createLlmProvider
 };
-//# sourceMappingURL=llm-T3QVHC3Y.js.map
+//# sourceMappingURL=llm-D4VWYUK7.js.map

package/dist/{loader-WQKVWL5D.js → loader-WC4U5NM5.js}

@@ -7,14 +7,14 @@ import {
   resolveDefinitionsDir,
   resolveEffectiveConfig,
   taskFromParsed
-} from "./chunk-NVCGF2DS.js";
+} from "./chunk-X4XFJG6I.js";
 import "./chunk-IB76KGBY.js";
 import "./chunk-MYX5NCRH.js";
 import "./chunk-LPUQPDC2.js";
 import "./chunk-TRA3R4EC.js";
-import "./chunk-S6I62FAH.js";
+import "./chunk-CUADDHHU.js";
 import "./chunk-D7TYRPRM.js";
-import "./chunk-KH64DHOY.js";
+import "./chunk-GDY63YAW.js";
 import "./chunk-PZUWP5VK.js";
 export {
   loadAgentDefinition,
@@ -25,4 +25,4 @@ export {
   resolveEffectiveConfig,
   taskFromParsed
 };
-//# sourceMappingURL=loader-WQKVWL5D.js.map
+//# sourceMappingURL=loader-WC4U5NM5.js.map

package/dist/{loader-JQLO6K44.js → loader-WGDVRGLM.js}

@@ -1,24 +1,26 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   CONFIG_FILENAME,
+  getEnabledSymbiontNames,
   loadConfig,
   saveConfig,
   updateBackupConfig,
   updateConfig,
   updateTeamConfig
-} from "./chunk-PSYLKCWQ.js";
+} from "./chunk-4BQ5QE76.js";
 import "./chunk-TRA3R4EC.js";
-import "./chunk-S6I62FAH.js";
+import "./chunk-CUADDHHU.js";
 import "./chunk-D7TYRPRM.js";
 import "./chunk-E4VLWIJC.js";
-import "./chunk-KH64DHOY.js";
+import "./chunk-GDY63YAW.js";
 import "./chunk-PZUWP5VK.js";
 export {
   CONFIG_FILENAME,
+  getEnabledSymbiontNames,
   loadConfig,
   saveConfig,
   updateBackupConfig,
   updateConfig,
   updateTeamConfig
 };
-//# sourceMappingURL=loader-JQLO6K44.js.map
+//# sourceMappingURL=loader-WGDVRGLM.js.map

package/dist/{logs-LXHPDKUA.js → logs-WFBX2I7C.js}

@@ -1,13 +1,13 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   LEVEL_ORDER
-} from "./chunk-ZESTWGJT.js";
+} from "./chunk-GYIA6XLB.js";
 import {
   formatLogLine,
   parseIntFlag,
   parseStringFlag
 } from "./chunk-SAKJMNSR.js";
-import "./chunk-S6I62FAH.js";
+import "./chunk-CUADDHHU.js";
 import "./chunk-PZUWP5VK.js";
 
 // src/logs/reader.ts
@@ -157,4 +157,4 @@ function run(args, vaultDir) {
 export {
   run
 };
-//# sourceMappingURL=logs-LXHPDKUA.js.map
+//# sourceMappingURL=logs-WFBX2I7C.js.map