@goondocks/myco 0.14.4 → 0.15.0

package/dist/{chunk-JJXVDCEX.js → chunk-75J2BR4P.js}

@@ -2,10 +2,10 @@ import { createRequire as __cr } from 'node:module'; const require = __cr(import
 import {
   getTeamMachineId,
   syncRow
-} from "./chunk-S66YG6QK.js";
+} from "./chunk-LF5Z62X6.js";
 import {
   loadConfig
-} from "./chunk-PSYLKCWQ.js";
+} from "./chunk-4BQ5QE76.js";
 import {
   getDatabase
 } from "./chunk-MYX5NCRH.js";
@@ -21,207 +21,206 @@ import {
   epochSeconds
 } from "./chunk-TRA3R4EC.js";
 
-// src/db/queries/batches.ts
-var DEFAULT_UNPROCESSED_LIMIT = 100;
-var BATCHES_DEFAULT_LIMIT = 200;
+// src/utils/error-message.ts
+function errorMessage(err) {
+  if (err instanceof Error) return err.message || err.constructor.name || "Error";
+  if (typeof err === "string") return err || "Empty string error";
+  try {
+    return JSON.stringify(err);
+  } catch {
+    return "Unserializable error";
+  }
+}
+
+// src/db/queries/runs.ts
+var DEFAULT_LIST_LIMIT2 = 100;
+var DEFAULT_STATUS = "pending";
+var STATUS_RUNNING = "running";
 var STATUS_COMPLETED = "completed";
-var DEFAULT_STATUS = "active";
-var DEFAULT_ACTIVITY_COUNT = 0;
-var DEFAULT_PROCESSED = 0;
-var PROCESSED_FLAG = 1;
-var PROMPT_PREFIX_MATCH_CHARS = 60;
-var BATCH_COLUMNS = [
+var STATUS_FAILED = "failed";
+var RUN_COLUMNS = [
   "id",
-  "session_id",
-  "prompt_number",
-  "user_prompt",
-  "response_summary",
-  "classification",
-  "started_at",
-  "ended_at",
+  "agent_id",
+  "task",
+  "instruction",
   "status",
-  "activity_count",
-  "processed",
-  "content_hash",
-  "created_at",
-  "machine_id",
-  "synced_at"
+  "started_at",
+  "completed_at",
+  "tokens_used",
+  "cost_usd",
+  "actions_taken",
+  "error"
 ];
-var SELECT_COLUMNS = BATCH_COLUMNS.join(", ");
-function toBatchRow(row) {
+var SELECT_COLUMNS = RUN_COLUMNS.join(", ");
+function toRunRow(row) {
   return {
     id: row.id,
-    session_id: row.session_id,
-    prompt_number: row.prompt_number ?? null,
-    user_prompt: row.user_prompt ?? null,
-    response_summary: row.response_summary ?? null,
-    classification: row.classification ?? null,
-    started_at: row.started_at ?? null,
-    ended_at: row.ended_at ?? null,
+    agent_id: row.agent_id,
+    task: row.task ?? null,
+    instruction: row.instruction ?? null,
     status: row.status,
-    activity_count: row.activity_count,
-    processed: row.processed,
-    content_hash: row.content_hash ?? null,
-    created_at: row.created_at,
-    machine_id: row.machine_id ?? "local",
-    synced_at: row.synced_at ?? null
+    started_at: row.started_at ?? null,
+    completed_at: row.completed_at ?? null,
+    tokens_used: row.tokens_used ?? null,
+    cost_usd: row.cost_usd ?? null,
+    actions_taken: row.actions_taken ?? null,
+    error: row.error ?? null
   };
 }
-function populateBatchResponses(sessionId, responses) {
-  const db = getDatabase();
-  const batches = db.prepare(
-    `SELECT id FROM prompt_batches WHERE session_id = ? ORDER BY id ASC`
-  ).all(sessionId);
-  for (const { turnIndex, response } of responses) {
-    const batchIndex = turnIndex - 1;
-    if (batchIndex >= 0 && batchIndex < batches.length) {
-      const batchId = batches[batchIndex].id;
-      db.prepare(
-        `UPDATE prompt_batches SET response_summary = ? WHERE id = ? AND response_summary IS NULL`
-      ).run(response, batchId);
-    }
-  }
-}
-function getUnprocessedBatches(options = {}) {
-  const db = getDatabase();
-  const conditions = [`processed = ?`];
-  const params = [DEFAULT_PROCESSED];
-  if (options.after_id !== void 0) {
-    conditions.push(`id > ?`);
-    params.push(options.after_id);
-  }
-  const limit = options.limit ?? DEFAULT_UNPROCESSED_LIMIT;
-  params.push(limit);
-  const where = conditions.join(" AND ");
-  const rows = db.prepare(
-    `SELECT ${SELECT_COLUMNS}
-     FROM prompt_batches
-     WHERE ${where}
-     ORDER BY id ASC
-     LIMIT ?`
-  ).all(...params);
-  return rows.map(toBatchRow);
-}
-function incrementActivityCount(id) {
-  const db = getDatabase();
-  const info = db.prepare(
-    `UPDATE prompt_batches
-     SET activity_count = activity_count + 1
-     WHERE id = ?`
-  ).run(id);
-  if (info.changes === 0) return null;
-  return toBatchRow(
-    db.prepare(`SELECT ${SELECT_COLUMNS} FROM prompt_batches WHERE id = ?`).get(id)
-  );
-}
-function markBatchProcessed(id) {
-  const db = getDatabase();
-  const info = db.prepare(
-    `UPDATE prompt_batches
-     SET processed = ?
-     WHERE id = ?`
-  ).run(PROCESSED_FLAG, id);
-  if (info.changes === 0) return null;
-  return toBatchRow(
-    db.prepare(`SELECT ${SELECT_COLUMNS} FROM prompt_batches WHERE id = ?`).get(id)
-  );
-}
-function findBatchByPromptPrefix(sessionId, promptPrefix) {
-  const db = getDatabase();
-  const prefix = promptPrefix.slice(0, PROMPT_PREFIX_MATCH_CHARS);
-  const row = db.prepare(
-    `SELECT id, prompt_number FROM prompt_batches
-     WHERE session_id = ? AND user_prompt LIKE ? || '%'
-     LIMIT 1`
-  ).get(sessionId, prefix);
-  return row ?? null;
-}
-function insertBatchStateless(data) {
+function insertRun(data) {
   const db = getDatabase();
-  const info = db.prepare(
-    `INSERT INTO prompt_batches (
-       session_id, prompt_number, user_prompt, response_summary,
-       classification, started_at, ended_at, status,
-       activity_count, processed, content_hash, created_at, machine_id
+  db.prepare(
+    `INSERT INTO agent_runs (
+       id, agent_id, task, instruction, status,
+       started_at, completed_at, tokens_used, cost_usd,
+       actions_taken, error
      ) VALUES (
-       ?,
-       (SELECT COALESCE(MAX(prompt_number), 0) + 1 FROM prompt_batches WHERE session_id = ?),
-       ?, NULL,
-       NULL, ?, NULL, ?,
-       ?, ?, NULL, ?, ?
+       ?, ?, ?, ?, ?,
+       ?, ?, ?, ?,
+       ?, ?
      )`
   ).run(
-    data.session_id,
-    data.session_id,
-    data.user_prompt ?? null,
-    data.started_at ?? null,
+    data.id,
+    data.agent_id,
+    data.task ?? null,
+    data.instruction ?? null,
     data.status ?? DEFAULT_STATUS,
-    DEFAULT_ACTIVITY_COUNT,
-    DEFAULT_PROCESSED,
-    data.created_at,
-    data.machine_id ?? getTeamMachineId()
+    data.started_at ?? null,
+    data.completed_at ?? null,
+    data.tokens_used ?? null,
+    data.cost_usd ?? null,
+    data.actions_taken ?? null,
+    data.error ?? null
   );
-  const batchId = Number(info.lastInsertRowid);
-  return toBatchRow(
-    db.prepare(`SELECT ${SELECT_COLUMNS} FROM prompt_batches WHERE id = ?`).get(batchId)
+  return toRunRow(
+    db.prepare(`SELECT ${SELECT_COLUMNS} FROM agent_runs WHERE id = ?`).get(data.id)
   );
 }
-function closeOpenBatches(sessionId, endedAt) {
-  const db = getDatabase();
-  const info = db.prepare(
-    `UPDATE prompt_batches
-     SET status = ?, ended_at = ?
-     WHERE session_id = ? AND ended_at IS NULL`
-  ).run(STATUS_COMPLETED, endedAt, sessionId);
-  return info.changes;
-}
-function setResponseSummary(batchId, summary) {
-  const db = getDatabase();
-  db.prepare(
-    `UPDATE prompt_batches SET response_summary = ? WHERE id = ? AND response_summary IS NULL`
-  ).run(summary, batchId);
-}
-function getLatestBatch(sessionId) {
+function getRun(id) {
   const db = getDatabase();
   const row = db.prepare(
-    `SELECT ${SELECT_COLUMNS} FROM prompt_batches
-     WHERE session_id = ?
-     ORDER BY id DESC LIMIT 1`
-  ).get(sessionId);
+    `SELECT ${SELECT_COLUMNS} FROM agent_runs WHERE id = ?`
+  ).get(id);
   if (!row) return null;
-  return toBatchRow(row);
+  return toRunRow(row);
 }
-function listBatchesBySession(sessionId, options = {}) {
+function buildRunsWhere(options) {
+  const conditions = [];
+  const params = [];
+  if (options.agent_id !== void 0) {
+    conditions.push(`agent_id = ?`);
+    params.push(options.agent_id);
+  }
+  if (options.status !== void 0) {
+    conditions.push(`status = ?`);
+    params.push(options.status);
+  }
+  if (options.task !== void 0) {
+    conditions.push(`task = ?`);
+    params.push(options.task);
+  }
+  if (options.search !== void 0 && options.search.length > 0) {
+    conditions.push(`task LIKE ?`);
+    params.push(`%${options.search}%`);
+  }
+  return {
+    where: conditions.length > 0 ? `WHERE ${conditions.join(" AND ")}` : "",
+    params
+  };
+}
+function listRuns(options = {}) {
   const db = getDatabase();
-  const limit = options.limit ?? BATCHES_DEFAULT_LIMIT;
+  const { where, params } = buildRunsWhere(options);
+  const limit = options.limit ?? DEFAULT_LIST_LIMIT2;
   const offset = options.offset ?? 0;
   const rows = db.prepare(
     `SELECT ${SELECT_COLUMNS}
-     FROM prompt_batches
-     WHERE session_id = ?
-     ORDER BY prompt_number ASC
+     FROM agent_runs
+     ${where}
+     ORDER BY started_at DESC NULLS LAST
      LIMIT ?
      OFFSET ?`
-  ).all(sessionId, limit, offset);
-  return rows.map(toBatchRow);
+  ).all(...params, limit, offset);
+  return rows.map(toRunRow);
 }
-function countBatchesBySession(sessionId) {
+function countRuns(options = {}) {
   const db = getDatabase();
+  const { where, params } = buildRunsWhere(options);
   const row = db.prepare(
-    `SELECT COUNT(*) as count FROM prompt_batches WHERE session_id = ?`
-  ).get(sessionId);
+    `SELECT COUNT(*) as count FROM agent_runs ${where}`
+  ).get(...params);
   return row.count;
 }
-
-// src/notifications/notify.ts
-import crypto from "crypto";
-
-// src/db/queries/notifications.ts
-var DEFAULT_LIMIT = 50;
-var NOTIFICATION_PRUNE_AGE_SECONDS = 30 * 24 * 60 * 60;
-function insertNotification(n) {
+function updateRunStatus(id, status, completion) {
   const db = getDatabase();
-  db.prepare(
+  const setClauses = ["status = ?"];
+  const params = [status];
+  if (completion?.completed_at !== void 0) {
+    setClauses.push(`completed_at = ?`);
+    params.push(completion.completed_at);
+  }
+  if (completion?.tokens_used !== void 0) {
+    setClauses.push(`tokens_used = ?`);
+    params.push(completion.tokens_used);
+  }
+  if (completion?.cost_usd !== void 0) {
+    setClauses.push(`cost_usd = ?`);
+    params.push(completion.cost_usd);
+  }
+  if (completion?.actions_taken !== void 0) {
+    setClauses.push(`actions_taken = ?`);
+    params.push(completion.actions_taken);
+  }
+  if (completion?.error !== void 0) {
+    setClauses.push(`error = ?`);
+    params.push(completion.error);
+  }
+  params.push(id);
+  const info = db.prepare(
+    `UPDATE agent_runs
+     SET ${setClauses.join(", ")}
+     WHERE id = ?`
+  ).run(...params);
+  if (info.changes === 0) return null;
+  return toRunRow(
+    db.prepare(`SELECT ${SELECT_COLUMNS} FROM agent_runs WHERE id = ?`).get(id)
+  );
+}
+function getRunningRunForTask(agentId, taskName) {
+  const db = getDatabase();
+  const row = db.prepare(
+    `SELECT id FROM agent_runs
+     WHERE agent_id = ? AND task = ? AND status = ?
+     LIMIT 1`
+  ).get(agentId, taskName, STATUS_RUNNING);
+  return row?.id ?? null;
+}
+function getLatestRunId(agentId, taskName) {
+  const db = getDatabase();
+  if (taskName) {
+    const row2 = db.prepare(
+      `SELECT id FROM agent_runs
+       WHERE agent_id = ? AND task = ?
+       ORDER BY started_at DESC
+       LIMIT 1`
+    ).get(agentId, taskName);
+    return row2?.id ?? null;
+  }
+  const row = db.prepare(
+    `SELECT id FROM agent_runs
+     WHERE agent_id = ?
+     ORDER BY started_at DESC
+     LIMIT 1`
+  ).get(agentId);
+  return row?.id ?? null;
+}
+
+// src/db/queries/notifications.ts
+var DEFAULT_LIMIT = 50;
+var NOTIFICATION_PRUNE_AGE_SECONDS = 30 * 24 * 60 * 60;
+function insertNotification(n) {
+  const db = getDatabase();
+  db.prepare(
     `INSERT INTO notifications (id, domain, type, level, title, message, mode, status, link, metadata, created_at)
      VALUES (?, ?, ?, ?, ?, ?, ?, 'unread', ?, ?, ?)`
   ).run(n.id, n.domain, n.type, n.level, n.title, n.message, n.mode, n.link, n.metadata, epochSeconds());
@@ -303,6 +302,7 @@ function getType(typeId) {
 }
 
 // src/notifications/notify.ts
+import crypto from "crypto";
 function notify(vaultDir, payload, config) {
   if (!vaultDir) return null;
   try {
@@ -332,17 +332,6 @@ function notify(vaultDir, payload, config) {
   }
 }
 
-// src/utils/error-message.ts
-function errorMessage(err) {
-  if (err instanceof Error) return err.message || err.constructor.name || "Error";
-  if (typeof err === "string") return err || "Empty string error";
-  try {
-    return JSON.stringify(err);
-  } catch {
-    return "Unserializable error";
-  }
-}
-
 // src/db/queries/skill-candidates.ts
 var DEFAULT_CONFIDENCE = 0;
 var DEFAULT_STATUS2 = "identified";
@@ -693,241 +682,256 @@ function deleteSkillRecordCascade(idOrName) {
   return { id: record.id, name: record.name };
 }
 
-// src/db/queries/runs.ts
-var DEFAULT_LIST_LIMIT2 = 100;
-var DEFAULT_STATUS4 = "pending";
-var STATUS_RUNNING = "running";
-var STATUS_COMPLETED2 = "completed";
-var STATUS_FAILED = "failed";
-var RUN_COLUMNS = [
+// src/db/queries/skill-lineage.ts
+var LINEAGE_COLUMNS = [
   "id",
-  "agent_id",
-  "task",
-  "instruction",
-  "status",
-  "started_at",
-  "completed_at",
-  "tokens_used",
-  "cost_usd",
-  "actions_taken",
-  "error"
+  "skill_id",
+  "generation",
+  "action",
+  "rationale",
+  "source_ids_added",
+  "content_snapshot",
+  "created_at"
 ];
-var SELECT_COLUMNS4 = RUN_COLUMNS.join(", ");
-function toRunRow(row) {
+var SELECT_COLUMNS4 = LINEAGE_COLUMNS.join(", ");
+function toLineageRow(row) {
   return {
     id: row.id,
-    agent_id: row.agent_id,
-    task: row.task ?? null,
-    instruction: row.instruction ?? null,
-    status: row.status,
-    started_at: row.started_at ?? null,
-    completed_at: row.completed_at ?? null,
-    tokens_used: row.tokens_used ?? null,
-    cost_usd: row.cost_usd ?? null,
-    actions_taken: row.actions_taken ?? null,
-    error: row.error ?? null
+    skill_id: row.skill_id,
+    generation: row.generation,
+    action: row.action,
+    rationale: row.rationale,
+    source_ids_added: row.source_ids_added ?? "[]",
+    content_snapshot: row.content_snapshot,
+    created_at: row.created_at
   };
 }
-function insertRun(data) {
+function insertLineage(data) {
   const db = getDatabase();
   db.prepare(
-    `INSERT INTO agent_runs (
-       id, agent_id, task, instruction, status,
-       started_at, completed_at, tokens_used, cost_usd,
-       actions_taken, error
+    `INSERT INTO skill_lineage (
+       id, skill_id, generation, action, rationale,
+       source_ids_added, content_snapshot, created_at
      ) VALUES (
        ?, ?, ?, ?, ?,
-       ?, ?, ?, ?,
-       ?, ?
+       ?, ?, ?
      )`
   ).run(
     data.id,
-    data.agent_id,
-    data.task ?? null,
-    data.instruction ?? null,
-    data.status ?? DEFAULT_STATUS4,
-    data.started_at ?? null,
-    data.completed_at ?? null,
-    data.tokens_used ?? null,
-    data.cost_usd ?? null,
-    data.actions_taken ?? null,
-    data.error ?? null
+    data.skill_id,
+    data.generation,
+    data.action,
+    data.rationale,
+    data.source_ids_added ?? "[]",
+    data.content_snapshot,
+    data.created_at
   );
-  return toRunRow(
-    db.prepare(`SELECT ${SELECT_COLUMNS4} FROM agent_runs WHERE id = ?`).get(data.id)
+  return toLineageRow(
+    db.prepare(`SELECT ${SELECT_COLUMNS4} FROM skill_lineage WHERE id = ?`).get(data.id)
   );
 }
-function getRun(id) {
+function listLineageForSkill(skillId, limit = 50) {
   const db = getDatabase();
-  const row = db.prepare(
-    `SELECT ${SELECT_COLUMNS4} FROM agent_runs WHERE id = ?`
-  ).get(id);
-  if (!row) return null;
-  return toRunRow(row);
+  const rows = db.prepare(
+    `SELECT ${SELECT_COLUMNS4}
+     FROM skill_lineage
+     WHERE skill_id = ?
+     ORDER BY generation DESC
+     LIMIT ?`
+  ).all(skillId, limit);
+  return rows.map(toLineageRow);
 }
-function buildRunsWhere(options) {
-  const conditions = [];
-  const params = [];
-  if (options.agent_id !== void 0) {
-    conditions.push(`agent_id = ?`);
-    params.push(options.agent_id);
-  }
-  if (options.status !== void 0) {
-    conditions.push(`status = ?`);
-    params.push(options.status);
-  }
-  if (options.task !== void 0) {
-    conditions.push(`task = ?`);
-    params.push(options.task);
-  }
-  if (options.search !== void 0 && options.search.length > 0) {
-    conditions.push(`task LIKE ?`);
-    params.push(`%${options.search}%`);
-  }
+
+// src/db/queries/batches.ts
+var DEFAULT_UNPROCESSED_LIMIT = 100;
+var BATCHES_DEFAULT_LIMIT = 200;
+var STATUS_COMPLETED2 = "completed";
+var DEFAULT_STATUS4 = "active";
+var DEFAULT_ACTIVITY_COUNT = 0;
+var DEFAULT_PROCESSED = 0;
+var PROCESSED_FLAG = 1;
+var PROMPT_PREFIX_MATCH_CHARS = 60;
+var BATCH_COLUMNS = [
+  "id",
+  "session_id",
+  "prompt_number",
+  "user_prompt",
+  "response_summary",
+  "classification",
+  "started_at",
+  "ended_at",
+  "status",
+  "activity_count",
+  "processed",
+  "content_hash",
+  "created_at",
+  "machine_id",
+  "synced_at"
+];
+var SELECT_COLUMNS5 = BATCH_COLUMNS.join(", ");
+function toBatchRow(row) {
   return {
-    where: conditions.length > 0 ? `WHERE ${conditions.join(" AND ")}` : "",
-    params
+    id: row.id,
+    session_id: row.session_id,
+    prompt_number: row.prompt_number ?? null,
+    user_prompt: row.user_prompt ?? null,
+    response_summary: row.response_summary ?? null,
+    classification: row.classification ?? null,
+    started_at: row.started_at ?? null,
+    ended_at: row.ended_at ?? null,
+    status: row.status,
+    activity_count: row.activity_count,
+    processed: row.processed,
+    content_hash: row.content_hash ?? null,
+    created_at: row.created_at,
+    machine_id: row.machine_id ?? "local",
+    synced_at: row.synced_at ?? null
   };
 }
-function listRuns(options = {}) {
+function populateBatchResponses(sessionId, responses) {
   const db = getDatabase();
-  const { where, params } = buildRunsWhere(options);
-  const limit = options.limit ?? DEFAULT_LIST_LIMIT2;
-  const offset = options.offset ?? 0;
-  const rows = db.prepare(
-    `SELECT ${SELECT_COLUMNS4}
-     FROM agent_runs
-     ${where}
-     ORDER BY started_at DESC NULLS LAST
-     LIMIT ?
-     OFFSET ?`
-  ).all(...params, limit, offset);
-  return rows.map(toRunRow);
+  const batches = db.prepare(
+    `SELECT id FROM prompt_batches WHERE session_id = ? ORDER BY id ASC`
+  ).all(sessionId);
+  for (const { turnIndex, response } of responses) {
+    const batchIndex = turnIndex - 1;
+    if (batchIndex >= 0 && batchIndex < batches.length) {
+      const batchId = batches[batchIndex].id;
+      db.prepare(
+        `UPDATE prompt_batches SET response_summary = ? WHERE id = ? AND response_summary IS NULL`
+      ).run(response, batchId);
+    }
+  }
 }
-function countRuns(options = {}) {
+function getUnprocessedBatches(options = {}) {
   const db = getDatabase();
-  const { where, params } = buildRunsWhere(options);
-  const row = db.prepare(
-    `SELECT COUNT(*) as count FROM agent_runs ${where}`
-  ).get(...params);
-  return row.count;
+  const conditions = [`processed = ?`];
+  const params = [DEFAULT_PROCESSED];
+  if (options.after_id !== void 0) {
+    conditions.push(`id > ?`);
+    params.push(options.after_id);
+  }
+  const limit = options.limit ?? DEFAULT_UNPROCESSED_LIMIT;
+  params.push(limit);
+  const where = conditions.join(" AND ");
+  const rows = db.prepare(
+    `SELECT ${SELECT_COLUMNS5}
+     FROM prompt_batches
+     WHERE ${where}
+     ORDER BY id ASC
+     LIMIT ?`
+  ).all(...params);
+  return rows.map(toBatchRow);
 }
-function updateRunStatus(id, status, completion) {
+function incrementActivityCount(id) {
   const db = getDatabase();
-  const setClauses = ["status = ?"];
-  const params = [status];
-  if (completion?.completed_at !== void 0) {
-    setClauses.push(`completed_at = ?`);
-    params.push(completion.completed_at);
-  }
-  if (completion?.tokens_used !== void 0) {
-    setClauses.push(`tokens_used = ?`);
-    params.push(completion.tokens_used);
-  }
-  if (completion?.cost_usd !== void 0) {
-    setClauses.push(`cost_usd = ?`);
-    params.push(completion.cost_usd);
-  }
-  if (completion?.actions_taken !== void 0) {
-    setClauses.push(`actions_taken = ?`);
-    params.push(completion.actions_taken);
-  }
-  if (completion?.error !== void 0) {
-    setClauses.push(`error = ?`);
-    params.push(completion.error);
-  }
-  params.push(id);
   const info = db.prepare(
-    `UPDATE agent_runs
-     SET ${setClauses.join(", ")}
+    `UPDATE prompt_batches
+     SET activity_count = activity_count + 1
      WHERE id = ?`
-  ).run(...params);
+  ).run(id);
   if (info.changes === 0) return null;
-  return toRunRow(
-    db.prepare(`SELECT ${SELECT_COLUMNS4} FROM agent_runs WHERE id = ?`).get(id)
+  return toBatchRow(
+    db.prepare(`SELECT ${SELECT_COLUMNS5} FROM prompt_batches WHERE id = ?`).get(id)
   );
 }
-function getRunningRunForTask(agentId, taskName) {
+function markBatchProcessed(id) {
   const db = getDatabase();
-  const row = db.prepare(
-    `SELECT id FROM agent_runs
-     WHERE agent_id = ? AND task = ? AND status = ?
-     LIMIT 1`
-  ).get(agentId, taskName, STATUS_RUNNING);
-  return row?.id ?? null;
+  const info = db.prepare(
+    `UPDATE prompt_batches
+     SET processed = ?
+     WHERE id = ?`
+  ).run(PROCESSED_FLAG, id);
+  if (info.changes === 0) return null;
+  return toBatchRow(
+    db.prepare(`SELECT ${SELECT_COLUMNS5} FROM prompt_batches WHERE id = ?`).get(id)
+  );
 }
-function getLatestRunId(agentId, taskName) {
+function findBatchByPromptPrefix(sessionId, promptPrefix) {
   const db = getDatabase();
-  if (taskName) {
-    const row2 = db.prepare(
-      `SELECT id FROM agent_runs
-       WHERE agent_id = ? AND task = ?
-       ORDER BY started_at DESC
-       LIMIT 1`
-    ).get(agentId, taskName);
-    return row2?.id ?? null;
-  }
+  const prefix = promptPrefix.slice(0, PROMPT_PREFIX_MATCH_CHARS);
   const row = db.prepare(
-    `SELECT id FROM agent_runs
-     WHERE agent_id = ?
-     ORDER BY started_at DESC
+    `SELECT id, prompt_number FROM prompt_batches
+     WHERE session_id = ? AND user_prompt LIKE ? || '%'
      LIMIT 1`
-  ).get(agentId);
-  return row?.id ?? null;
-}
-
-// src/db/queries/reports.ts
-var REPORT_COLUMNS = [
-  "id",
-  "run_id",
-  "agent_id",
-  "action",
-  "summary",
-  "details",
-  "created_at"
-];
-var SELECT_COLUMNS5 = REPORT_COLUMNS.join(", ");
-function toReportRow(row) {
-  return {
-    id: row.id,
-    run_id: row.run_id,
-    agent_id: row.agent_id,
-    action: row.action,
-    summary: row.summary,
-    details: row.details ?? null,
-    created_at: row.created_at
-  };
+  ).get(sessionId, prefix);
+  return row ?? null;
 }
-function insertReport(data) {
+function insertBatchStateless(data) {
   const db = getDatabase();
   const info = db.prepare(
-    `INSERT INTO agent_reports (
-       run_id, agent_id, action, summary, details, created_at
+    `INSERT INTO prompt_batches (
+       session_id, prompt_number, user_prompt, response_summary,
+       classification, started_at, ended_at, status,
+       activity_count, processed, content_hash, created_at, machine_id
      ) VALUES (
-       ?, ?, ?, ?, ?, ?
+       ?,
+       (SELECT COALESCE(MAX(prompt_number), 0) + 1 FROM prompt_batches WHERE session_id = ?),
+       ?, NULL,
+       NULL, ?, NULL, ?,
+       ?, ?, NULL, ?, ?
      )`
   ).run(
-    data.run_id,
-    data.agent_id,
-    data.action,
-    data.summary,
-    data.details ?? null,
-    data.created_at
+    data.session_id,
+    data.session_id,
+    data.user_prompt ?? null,
+    data.started_at ?? null,
+    data.status ?? DEFAULT_STATUS4,
+    DEFAULT_ACTIVITY_COUNT,
+    DEFAULT_PROCESSED,
+    data.created_at,
+    data.machine_id ?? getTeamMachineId()
   );
-  const reportId = Number(info.lastInsertRowid);
-  return toReportRow(
-    db.prepare(`SELECT ${SELECT_COLUMNS5} FROM agent_reports WHERE id = ?`).get(reportId)
+  const batchId = Number(info.lastInsertRowid);
+  return toBatchRow(
+    db.prepare(`SELECT ${SELECT_COLUMNS5} FROM prompt_batches WHERE id = ?`).get(batchId)
   );
 }
-function listReports(runId) {
+function closeOpenBatches(sessionId, endedAt) {
+  const db = getDatabase();
+  const info = db.prepare(
+    `UPDATE prompt_batches
+     SET status = ?, ended_at = ?
+     WHERE session_id = ? AND ended_at IS NULL`
+  ).run(STATUS_COMPLETED2, endedAt, sessionId);
+  return info.changes;
+}
+function setResponseSummary(batchId, summary) {
+  const db = getDatabase();
+  db.prepare(
+    `UPDATE prompt_batches SET response_summary = ? WHERE id = ? AND response_summary IS NULL`
+  ).run(summary, batchId);
+}
+function getLatestBatch(sessionId) {
+  const db = getDatabase();
+  const row = db.prepare(
+    `SELECT ${SELECT_COLUMNS5} FROM prompt_batches
+     WHERE session_id = ?
+     ORDER BY id DESC LIMIT 1`
+  ).get(sessionId);
+  if (!row) return null;
+  return toBatchRow(row);
+}
+function listBatchesBySession(sessionId, options = {}) {
   const db = getDatabase();
+  const limit = options.limit ?? BATCHES_DEFAULT_LIMIT;
+  const offset = options.offset ?? 0;
   const rows = db.prepare(
     `SELECT ${SELECT_COLUMNS5}
-     FROM agent_reports
-     WHERE run_id = ?
-     ORDER BY created_at ASC`
-  ).all(runId);
-  return rows.map(toReportRow);
+     FROM prompt_batches
+     WHERE session_id = ?
+     ORDER BY prompt_number ASC
+     LIMIT ?
+     OFFSET ?`
+  ).all(sessionId, limit, offset);
+  return rows.map(toBatchRow);
+}
+function countBatchesBySession(sessionId) {
+  const db = getDatabase();
+  const row = db.prepare(
+    `SELECT COUNT(*) as count FROM prompt_batches WHERE session_id = ?`
+  ).get(sessionId);
+  return row.count;
 }
 
 // src/db/queries/graph-edges.ts
@@ -1066,62 +1070,6 @@ function getGraphForNode(nodeId, nodeType, options) {
   return { edges: collectedEdges };
 }
 
-// src/db/queries/lineage.ts
-function createSporeLineage(spore) {
-  if (spore.session_id) {
-    insertGraphEdge({
-      agent_id: spore.agent_id,
-      source_id: spore.id,
-      source_type: "spore",
-      target_id: spore.session_id,
-      target_type: "session",
-      type: EDGE_TYPE_FROM_SESSION,
-      created_at: spore.created_at
-    });
-  }
-  if (spore.prompt_batch_id != null) {
-    insertGraphEdge({
-      agent_id: spore.agent_id,
-      source_id: spore.id,
-      source_type: "spore",
-      target_id: String(spore.prompt_batch_id),
-      target_type: "batch",
-      type: EDGE_TYPE_EXTRACTED_FROM,
-      created_at: spore.created_at
-    });
-  }
-  if (spore.observation_type === "wisdom" && spore.properties) {
-    try {
-      const props = JSON.parse(spore.properties);
-      if (Array.isArray(props.consolidated_from)) {
-        for (const sourceId of props.consolidated_from) {
-          insertGraphEdge({
-            agent_id: spore.agent_id,
-            source_id: spore.id,
-            source_type: "spore",
-            target_id: sourceId,
-            target_type: "spore",
-            type: EDGE_TYPE_DERIVED_FROM,
-            created_at: spore.created_at
-          });
-        }
-      }
-    } catch {
-    }
-  }
-}
-function createBatchLineage(agentId, sessionId, batchId, createdAt) {
-  insertGraphEdge({
-    agent_id: agentId,
-    source_id: sessionId,
-    source_type: "session",
-    target_id: String(batchId),
-    target_type: "batch",
-    type: EDGE_TYPE_HAS_BATCH,
-    created_at: createdAt
-  });
-}
-
 // src/db/queries/entities.ts
 var DEFAULT_LIST_LIMIT3 = 100;
 var ENTITY_COLUMNS = [
@@ -1292,97 +1240,126 @@ function listDigestExtracts(agentId) {
   return rows.map(toDigestExtractRow);
 }
 
-// src/db/queries/skill-lineage.ts
-var LINEAGE_COLUMNS = [
+// src/db/queries/lineage.ts
+function createSporeLineage(spore) {
+  if (spore.session_id) {
+    insertGraphEdge({
+      agent_id: spore.agent_id,
+      source_id: spore.id,
+      source_type: "spore",
+      target_id: spore.session_id,
+      target_type: "session",
+      type: EDGE_TYPE_FROM_SESSION,
+      created_at: spore.created_at
+    });
+  }
+  if (spore.prompt_batch_id != null) {
+    insertGraphEdge({
+      agent_id: spore.agent_id,
+      source_id: spore.id,
+      source_type: "spore",
+      target_id: String(spore.prompt_batch_id),
+      target_type: "batch",
+      type: EDGE_TYPE_EXTRACTED_FROM,
+      created_at: spore.created_at
+    });
+  }
+  if (spore.observation_type === "wisdom" && spore.properties) {
+    try {
+      const props = JSON.parse(spore.properties);
+      if (Array.isArray(props.consolidated_from)) {
+        for (const sourceId of props.consolidated_from) {
+          insertGraphEdge({
+            agent_id: spore.agent_id,
+            source_id: spore.id,
+            source_type: "spore",
+            target_id: sourceId,
+            target_type: "spore",
+            type: EDGE_TYPE_DERIVED_FROM,
+            created_at: spore.created_at
+          });
+        }
+      }
+    } catch {
+    }
+  }
+}
+function createBatchLineage(agentId, sessionId, batchId, createdAt) {
+  insertGraphEdge({
+    agent_id: agentId,
+    source_id: sessionId,
+    source_type: "session",
+    target_id: String(batchId),
+    target_type: "batch",
+    type: EDGE_TYPE_HAS_BATCH,
+    created_at: createdAt
+  });
+}
+
+// src/db/queries/reports.ts
+var REPORT_COLUMNS = [
   "id",
-  "skill_id",
-  "generation",
+  "run_id",
+  "agent_id",
   "action",
-  "rationale",
-  "source_ids_added",
-  "content_snapshot",
+  "summary",
+  "details",
   "created_at"
 ];
-var SELECT_COLUMNS9 = LINEAGE_COLUMNS.join(", ");
-function toLineageRow(row) {
+var SELECT_COLUMNS9 = REPORT_COLUMNS.join(", ");
+function toReportRow(row) {
   return {
     id: row.id,
-    skill_id: row.skill_id,
-    generation: row.generation,
+    run_id: row.run_id,
+    agent_id: row.agent_id,
     action: row.action,
-    rationale: row.rationale,
-    source_ids_added: row.source_ids_added ?? "[]",
-    content_snapshot: row.content_snapshot,
+    summary: row.summary,
+    details: row.details ?? null,
     created_at: row.created_at
   };
 }
-function insertLineage(data) {
+function insertReport(data) {
   const db = getDatabase();
-  db.prepare(
-    `INSERT INTO skill_lineage (
-       id, skill_id, generation, action, rationale,
-       source_ids_added, content_snapshot, created_at
+  const info = db.prepare(
+    `INSERT INTO agent_reports (
+       run_id, agent_id, action, summary, details, created_at
      ) VALUES (
-       ?, ?, ?, ?, ?,
-       ?, ?, ?
+       ?, ?, ?, ?, ?, ?
      )`
   ).run(
-    data.id,
-    data.skill_id,
-    data.generation,
+    data.run_id,
+    data.agent_id,
     data.action,
-    data.rationale,
-    data.source_ids_added ?? "[]",
-    data.content_snapshot,
+    data.summary,
+    data.details ?? null,
     data.created_at
   );
-  return toLineageRow(
-    db.prepare(`SELECT ${SELECT_COLUMNS9} FROM skill_lineage WHERE id = ?`).get(data.id)
+  const reportId = Number(info.lastInsertRowid);
+  return toReportRow(
+    db.prepare(`SELECT ${SELECT_COLUMNS9} FROM agent_reports WHERE id = ?`).get(reportId)
   );
 }
-function listLineageForSkill(skillId, limit = 50) {
+function listReports(runId) {
   const db = getDatabase();
   const rows = db.prepare(
     `SELECT ${SELECT_COLUMNS9}
-     FROM skill_lineage
-     WHERE skill_id = ?
-     ORDER BY generation DESC
-     LIMIT ?`
-  ).all(skillId, limit);
-  return rows.map(toLineageRow);
+     FROM agent_reports
+     WHERE run_id = ?
+     ORDER BY created_at ASC`
+  ).all(runId);
+  return rows.map(toReportRow);
 }
 
 export {
-  populateBatchResponses,
-  getUnprocessedBatches,
-  incrementActivityCount,
-  markBatchProcessed,
-  findBatchByPromptPrefix,
-  insertBatchStateless,
-  closeOpenBatches,
-  setResponseSummary,
-  getLatestBatch,
-  listBatchesBySession,
-  countBatchesBySession,
-  insertGraphEdge,
-  listGraphEdges,
-  getGraphForNode,
-  insertEntity,
-  getEntity,
-  listEntities,
-  upsertDigestExtract,
-  getDigestExtract,
-  listDigestExtracts,
-  register,
-  getAllDomains,
   listNotifications,
   countNotifications,
   getNotification,
   updateNotificationStatus,
   dismissAllNotifications,
   markAllRead,
+  register,
+  getAllDomains,
   notify,
-  errorMessage,
   insertCandidate,
   getCandidate,
   listCandidates,
@@ -1401,8 +1378,29 @@ export {
   deleteSkillRecordCascade,
   insertLineage,
   listLineageForSkill,
+  populateBatchResponses,
+  getUnprocessedBatches,
+  incrementActivityCount,
+  markBatchProcessed,
+  findBatchByPromptPrefix,
+  insertBatchStateless,
+  closeOpenBatches,
+  setResponseSummary,
+  getLatestBatch,
+  listBatchesBySession,
+  countBatchesBySession,
+  insertGraphEdge,
+  listGraphEdges,
+  getGraphForNode,
+  insertEntity,
+  getEntity,
+  listEntities,
+  upsertDigestExtract,
+  getDigestExtract,
+  listDigestExtracts,
+  errorMessage,
   STATUS_RUNNING,
-  STATUS_COMPLETED2 as STATUS_COMPLETED,
+  STATUS_COMPLETED,
   STATUS_FAILED,
   insertRun,
   getRun,
@@ -1411,9 +1409,9 @@ export {
   updateRunStatus,
   getRunningRunForTask,
   getLatestRunId,
-  insertReport,
-  listReports,
   createSporeLineage,
-  createBatchLineage
+  createBatchLineage,
+  insertReport,
+  listReports
 };
-//# sourceMappingURL=chunk-JJXVDCEX.js.map
+//# sourceMappingURL=chunk-75J2BR4P.js.map