@goondocks/myco 0.14.3 → 0.15.0

package/dist/chunk-NVCGF2DS.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/agent/loader.ts","../src/db/queries/agents.ts","../src/db/queries/tasks.ts","../src/agent/schemas.ts"],"sourcesContent":["/**\n * Agent definition and task YAML loader.\n *\n * Reads agent.yaml and tasks/*.yaml from the definitions directory,\n * validates their shape, and provides helpers for merging built-in\n * definitions with database overrides into an EffectiveConfig.\n */\n\nimport fs from 'node:fs';\nimport path from 'node:path';\nimport { fileURLToPath } from 'node:url';\nimport { findPackageRoot } from '@myco/utils/find-package-root.js';\nimport { parse as parseYaml } from 'yaml';\nimport { epochSeconds, DEFAULT_AGENT_ID, BUILT_IN_SOURCE, USER_TASK_SOURCE } from '@myco/constants.js';\nimport { getDatabase } from '@myco/db/client.js';\nimport { registerAgent } from '@myco/db/queries/agents.js';\nimport { upsertTask } from '@myco/db/queries/tasks.js';\nimport type { AgentRow } from '@myco/db/queries/agents.js';\nimport type { AgentDefinition, AgentTask, EffectiveConfig } from './types.js';\nimport { AgentDefinitionSchema, AgentTaskSchema } from './schemas.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Filename for the built-in agent definition. */\nconst AGENT_DEFINITION_FILE = 'agent.yaml';\n\n/** Subdirectory containing task YAML files. */\nconst TASKS_SUBDIRECTORY = 'tasks';\n\n// Package root resolution uses shared findPackageRoot from @myco/utils\n\n// BUILT_IN_SOURCE imported from @myco/constants.js\n\n// ---------------------------------------------------------------------------\n// Definitions directory resolution\n// ---------------------------------------------------------------------------\n\n/**\n * Resolve the definitions directory at runtime.\n *\n * Strategy (same pattern as `src/prompts/index.ts`):\n * 1. Walk up from `import.meta.url` looking for `package.json`.\n * 2. From package root, try `dist/src/agent/definitions/` (tsup output).\n * 3. Fall back to `src/agent/definitions/` (dev mode / tsc output).\n * 4. Also check if the current file's directory already contains agent.yaml.\n */\nexport function resolveDefinitionsDir(): string {\n  const scriptDir = path.dirname(fileURLToPath(import.meta.url));\n\n  // Check if we're already adjacent to the definitions (tsc output or dev mode)\n  const adjacentDefs = path.join(scriptDir, 'definitions');\n  if (fs.existsSync(path.join(adjacentDefs, AGENT_DEFINITION_FILE))) {\n    return adjacentDefs;\n  }\n\n  // Walk up to package root using shared utility\n  const root = findPackageRoot(scriptDir);\n  if (root) {\n    // Try dist path first (tsup bundled output)\n    const distPath = path.join(root, 'dist', 'src', 'agent', 'definitions');\n    if (fs.existsSync(path.join(distPath, AGENT_DEFINITION_FILE))) {\n      return distPath;\n    }\n    // Fall back to src path (dev mode)\n    const srcPath = path.join(root, 'src', 'agent', 'definitions');\n    if (fs.existsSync(path.join(srcPath, AGENT_DEFINITION_FILE))) {\n      return srcPath;\n    }\n  }\n\n  // Final fallback: adjacent to current file\n  return adjacentDefs;\n}\n\n// ---------------------------------------------------------------------------\n// YAML loaders\n// ---------------------------------------------------------------------------\n\n/**\n * Load and parse the built-in agent definition from `agent.yaml`.\n *\n * @param definitionsDir — path to the definitions directory.\n * @returns the parsed AgentDefinition.\n * @throws if the file is missing or malformed.\n */\nexport function loadAgentDefinition(definitionsDir: string): AgentDefinition {\n  const filePath = path.join(definitionsDir, AGENT_DEFINITION_FILE);\n  const raw = fs.readFileSync(filePath, 'utf-8');\n  const parsed = AgentDefinitionSchema.parse(parseYaml(raw));\n\n  return {\n    name: parsed.name,\n    displayName: parsed.displayName,\n    description: parsed.description.trim(),\n    model: parsed.model,\n    maxTurns: parsed.maxTurns,\n    timeoutSeconds: parsed.timeoutSeconds,\n    systemPromptPath: parsed.systemPromptPath,\n    tools: parsed.tools,\n  };\n}\n\n/**\n * Load and parse all task YAML files from `tasks/`.\n *\n * @param definitionsDir — path to the definitions directory.\n * @returns array of parsed AgentTask objects.\n */\nexport function loadAgentTasks(definitionsDir: string): AgentTask[] {\n  const tasksDir = path.join(definitionsDir, TASKS_SUBDIRECTORY);\n  if (!fs.existsSync(tasksDir)) return [];\n\n  const files = fs.readdirSync(tasksDir).filter((f) => f.endsWith('.yaml'));\n  return files.map((file) => {\n    const raw = fs.readFileSync(path.join(tasksDir, file), 'utf-8');\n    const parsed = AgentTaskSchema.parse(parseYaml(raw));\n\n    return taskFromParsed(parsed);\n  });\n}\n\n/**\n * Convert a Zod-parsed task schema result to an AgentTask object.\n *\n * Shared by loadAgentTasks (built-in) and registry (user tasks) to ensure\n * all optional fields are consistently spread. Adding a new optional field\n * to AgentTaskSchema only requires updating this one function.\n */\nexport function taskFromParsed(parsed: AgentTask): AgentTask {\n  return {\n    name: parsed.name,\n    displayName: parsed.displayName,\n    description: parsed.description.trim(),\n    agent: parsed.agent,\n    prompt: parsed.prompt.trim(),\n    isDefault: parsed.isDefault,\n    ...(parsed.toolOverrides ? { toolOverrides: parsed.toolOverrides } : {}),\n    ...(parsed.model ? { model: parsed.model } : {}),\n    ...(parsed.maxTurns ? { maxTurns: parsed.maxTurns } : {}),\n    ...(parsed.timeoutSeconds ? { timeoutSeconds: parsed.timeoutSeconds } : {}),\n    ...(parsed.phases ? { phases: parsed.phases } : {}),\n    ...(parsed.orchestrator ? { orchestrator: parsed.orchestrator } : {}),\n    ...(parsed.contextQueries ? { contextQueries: parsed.contextQueries } : {}),\n    ...(parsed.execution ? { execution: parsed.execution } : {}),\n    ...(parsed.schemaVersion ? { schemaVersion: parsed.schemaVersion } : {}),\n    ...(parsed.schedule ? { schedule: parsed.schedule } : {}),\n  };\n}\n\n/**\n * Load a system prompt markdown file.\n *\n * @param definitionsDir — path to the definitions directory.\n * @param relativePath — path relative to definitionsDir (from AgentDefinition.systemPromptPath).\n * @returns the prompt file content as a string.\n */\nexport function loadSystemPrompt(definitionsDir: string, relativePath: string): string {\n  const filePath = path.resolve(definitionsDir, relativePath);\n  return fs.readFileSync(filePath, 'utf-8').trim();\n}\n\n// ---------------------------------------------------------------------------\n// Config resolution\n// ---------------------------------------------------------------------------\n\n/**\n * Merge a built-in AgentDefinition with optional database overrides and\n * task-specific configuration to produce the effective runtime config.\n *\n * Priority (highest wins):\n * 1. Task toolOverrides (replaces tool list entirely if present)\n * 2. AgentRow database overrides (model, maxTurns, timeoutSeconds, tool_access)\n * 3. Built-in AgentDefinition defaults\n *\n * @param definition — the built-in agent definition from YAML.\n * @param agentOverrides — optional database row with user-applied overrides.\n * @param taskOverrides — optional task definition (determines prompt and may override tools).\n * @returns the merged EffectiveConfig.\n */\nexport function resolveEffectiveConfig(\n  definition: AgentDefinition,\n  agentOverrides?: AgentRow | null,\n  taskOverrides?: AgentTask,\n): EffectiveConfig {\n  // Start with definition defaults\n  let model = definition.model;\n  let maxTurns = definition.maxTurns;\n  let timeoutSeconds = definition.timeoutSeconds;\n  let tools = [...definition.tools];\n  const agentId = agentOverrides?.id ?? DEFAULT_AGENT_ID;\n\n  // Apply agent DB overrides\n  if (agentOverrides) {\n    if (agentOverrides.model) model = agentOverrides.model;\n    if (agentOverrides.max_turns !== null) maxTurns = agentOverrides.max_turns;\n    if (agentOverrides.timeout_seconds !== null) timeoutSeconds = agentOverrides.timeout_seconds;\n    if (agentOverrides.tool_access) {\n      try {\n        const parsed = JSON.parse(agentOverrides.tool_access);\n        if (Array.isArray(parsed)) tools = parsed as string[];\n      } catch {\n        // Invalid JSON in tool_access — keep definition defaults\n      }\n    }\n  }\n\n  // Apply task overrides (model, turns, timeout, tool list)\n  if (taskOverrides?.model) model = taskOverrides.model;\n  if (taskOverrides?.maxTurns) maxTurns = taskOverrides.maxTurns;\n  if (taskOverrides?.timeoutSeconds) timeoutSeconds = taskOverrides.timeoutSeconds;\n  if (taskOverrides?.toolOverrides) {\n    tools = [...taskOverrides.toolOverrides];\n  }\n\n  // Apply execution config overrides (highest priority)\n  // Precedence: execution.model > task.model > agent.model\n  if (taskOverrides?.execution) {\n    if (taskOverrides.execution.model) model = taskOverrides.execution.model;\n    if (taskOverrides.execution.maxTurns) maxTurns = taskOverrides.execution.maxTurns;\n    if (taskOverrides.execution.timeoutSeconds) timeoutSeconds = taskOverrides.execution.timeoutSeconds;\n  }\n\n  // Task prompt and display info (fall back to a generic prompt)\n  const taskName = taskOverrides?.name ?? 'full-intelligence';\n  const taskDisplayName = taskOverrides?.displayName ?? 'Full Intelligence';\n  const taskPrompt = taskOverrides?.prompt ?? '';\n\n  return {\n    agentId,\n    model,\n    maxTurns,\n    timeoutSeconds,\n    systemPromptPath: definition.systemPromptPath,\n    tools,\n    taskName,\n    taskDisplayName,\n    taskPrompt,\n    ...(taskOverrides?.phases ? { phases: taskOverrides.phases } : {}),\n    ...(taskOverrides?.orchestrator ? { orchestrator: taskOverrides.orchestrator } : {}),\n    ...(taskOverrides?.contextQueries ? { contextQueries: taskOverrides.contextQueries } : {}),\n    ...(taskOverrides?.execution ? { execution: taskOverrides.execution } : {}),\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Database registration\n// ---------------------------------------------------------------------------\n\n/**\n * Register the built-in agent and all built-in tasks into the database.\n *\n * Idempotent: uses upsert (ON CONFLICT DO UPDATE) for both agent and tasks.\n * Safe to call on every daemon startup.\n *\n * @param definitionsDir — path to the definitions directory.\n */\nexport async function registerBuiltInAgentsAndTasks(definitionsDir: string, vaultDir?: string): Promise<void> {\n  const definition = loadAgentDefinition(definitionsDir);\n  const tasks = loadAgentTasks(definitionsDir);\n  const now = epochSeconds();\n\n  // Upsert the built-in agent\n  registerAgent({\n    id: definition.name,\n    name: definition.displayName,\n    model: definition.model,\n    source: BUILT_IN_SOURCE,\n    max_turns: definition.maxTurns,\n    timeout_seconds: definition.timeoutSeconds,\n    tool_access: JSON.stringify(definition.tools),\n    created_at: now,\n    updated_at: now,\n  });\n\n  // Upsert all built-in tasks\n  for (const task of tasks) {\n    upsertTask({\n      id: task.name,\n      agent_id: definition.name,\n      source: BUILT_IN_SOURCE,\n      display_name: task.displayName,\n      description: task.description,\n      prompt: task.prompt,\n      is_default: task.isDefault ? 1 : 0,\n      tool_overrides: task.toolOverrides ? JSON.stringify(task.toolOverrides) : null,\n      config: JSON.stringify({\n        phases: task.phases ?? null,\n        execution: task.execution ?? null,\n        contextQueries: task.contextQueries ?? null,\n        schemaVersion: task.schemaVersion ?? 1,\n      }),\n      created_at: now,\n      updated_at: now,\n    });\n  }\n\n  // Remove built-in tasks that no longer have YAML definitions\n  const validTaskIds = tasks.map(t => t.name);\n  if (validTaskIds.length > 0) {\n    const db = getDatabase();\n    const placeholders = validTaskIds.map(() => '?').join(', ');\n    db.prepare(\n      `DELETE FROM agent_tasks\n       WHERE source = ? AND agent_id = ? AND id NOT IN (${placeholders})`,\n    ).run(BUILT_IN_SOURCE, definition.name, ...validTaskIds);\n  }\n\n  // Register user tasks from the vault (if vault dir provided)\n  if (vaultDir) {\n    const { loadAllTasks } = await import('./registry.js');\n    const allTasks = loadAllTasks(definitionsDir, vaultDir);\n    for (const [name, task] of allTasks) {\n      if (task.source === USER_TASK_SOURCE) {\n        upsertTask({\n          id: name,\n          agent_id: task.agent ?? definition.name,\n          source: USER_TASK_SOURCE,\n          display_name: task.displayName,\n          description: task.description,\n          prompt: task.prompt,\n          is_default: task.isDefault ? 1 : 0,\n          tool_overrides: task.toolOverrides ? JSON.stringify(task.toolOverrides) : null,\n          config: JSON.stringify({\n            phases: task.phases ?? null,\n            execution: task.execution ?? null,\n            contextQueries: task.contextQueries ?? null,\n            schemaVersion: task.schemaVersion ?? 1,\n          }),\n          created_at: now,\n          updated_at: now,\n        });\n      }\n    }\n  }\n}\n","/**\n * Agent CRUD query helpers.\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport { getDatabase } from '@myco/db/client.js';\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Fields required (or optional) when registering an agent. */\nexport interface AgentInsert {\n  id: string;\n  name: string;\n  created_at: number;\n  provider?: string | null;\n  model?: string | null;\n  system_prompt_hash?: string | null;\n  config?: string | null;\n  source?: string;\n  system_prompt?: string | null;\n  max_turns?: number | null;\n  timeout_seconds?: number | null;\n  tool_access?: string | null;\n  enabled?: number;\n  updated_at?: number | null;\n}\n\n/** Row shape returned from agent queries (all columns). */\nexport interface AgentRow {\n  id: string;\n  name: string;\n  provider: string | null;\n  model: string | null;\n  system_prompt_hash: string | null;\n  config: string | null;\n  source: string;\n  system_prompt: string | null;\n  max_turns: number | null;\n  timeout_seconds: number | null;\n  tool_access: string | null;\n  enabled: number;\n  created_at: number;\n  updated_at: number | null;\n}\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Default agent source for new agents. */\nconst DEFAULT_SOURCE = 'built-in';\n\n/** Default enabled flag for new agents. */\nconst DEFAULT_ENABLED = 1;\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst AGENT_COLUMNS = [\n  'id',\n  'name',\n  'provider',\n  'model',\n  'system_prompt_hash',\n  'config',\n  'source',\n  'system_prompt',\n  'max_turns',\n  'timeout_seconds',\n  'tool_access',\n  'enabled',\n  'created_at',\n  'updated_at',\n] as const;\n\nconst SELECT_COLUMNS = AGENT_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Normalize a SQLite result row into a typed AgentRow. */\nfunction toAgentRow(row: Record<string, unknown>): AgentRow {\n  return {\n    id: row.id as string,\n    name: row.name as string,\n    provider: (row.provider as string) ?? null,\n    model: (row.model as string) ?? null,\n    system_prompt_hash: (row.system_prompt_hash as string) ?? null,\n    config: (row.config as string) ?? null,\n    source: (row.source as string) ?? DEFAULT_SOURCE,\n    system_prompt: (row.system_prompt as string) ?? null,\n    max_turns: (row.max_turns as number) ?? null,\n    timeout_seconds: (row.timeout_seconds as number) ?? null,\n    tool_access: (row.tool_access as string) ?? null,\n    enabled: (row.enabled as number) ?? DEFAULT_ENABLED,\n    created_at: row.created_at as number,\n    updated_at: (row.updated_at as number) ?? null,\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Register an agent or update it if the id already exists.\n *\n * On conflict the row is updated with the values from `data`.\n * This is the idempotent upsert — calling twice with the same data\n * produces the same result.\n */\nexport function registerAgent(data: AgentInsert): AgentRow {\n  const db = getDatabase();\n\n  db.prepare(\n    `INSERT INTO agents (\n       id, name, provider, model, system_prompt_hash, config,\n       source, system_prompt, max_turns, timeout_seconds, tool_access,\n       enabled, created_at, updated_at\n     ) VALUES (\n       ?, ?, ?, ?, ?, ?,\n       ?, ?, ?, ?, ?,\n       ?, ?, ?\n     )\n     ON CONFLICT (id) DO UPDATE SET\n       name               = EXCLUDED.name,\n       provider           = EXCLUDED.provider,\n       model              = EXCLUDED.model,\n       system_prompt_hash = EXCLUDED.system_prompt_hash,\n       config             = EXCLUDED.config,\n       source             = EXCLUDED.source,\n       system_prompt      = EXCLUDED.system_prompt,\n       max_turns          = EXCLUDED.max_turns,\n       timeout_seconds    = EXCLUDED.timeout_seconds,\n       tool_access        = EXCLUDED.tool_access,\n       enabled            = EXCLUDED.enabled,\n       updated_at         = EXCLUDED.updated_at`,\n  ).run(\n    data.id,\n    data.name,\n    data.provider ?? null,\n    data.model ?? null,\n    data.system_prompt_hash ?? null,\n    data.config ?? null,\n    data.source ?? DEFAULT_SOURCE,\n    data.system_prompt ?? null,\n    data.max_turns ?? null,\n    data.timeout_seconds ?? null,\n    data.tool_access ?? null,\n    data.enabled ?? DEFAULT_ENABLED,\n    data.created_at,\n    data.updated_at ?? null,\n  );\n\n  return toAgentRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM agents WHERE id = ?`).get(data.id) as Record<string, unknown>,\n  );\n}\n\n/**\n * Retrieve a single agent by id.\n *\n * @returns the agent row, or null if not found.\n */\nexport function getAgent(id: string): AgentRow | null {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT ${SELECT_COLUMNS} FROM agents WHERE id = ?`,\n  ).get(id) as Record<string, unknown> | undefined;\n\n  if (!row) return null;\n  return toAgentRow(row);\n}\n\n/**\n * List all agents, ordered by created_at ASC.\n */\nexport function listAgents(): AgentRow[] {\n  const db = getDatabase();\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM agents\n     ORDER BY created_at ASC`,\n  ).all() as Record<string, unknown>[];\n\n  return rows.map(toAgentRow);\n}\n","/**\n * Agent task CRUD query helpers.\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport { getDatabase } from '@myco/db/client.js';\nimport { BUILT_IN_SOURCE } from '@myco/constants.js';\nimport type { TaskConfig } from '@myco/agent/types.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Default number of tasks returned by listTasks when no limit given. */\nconst DEFAULT_LIST_LIMIT = 100;\n\n/** Default task source for new tasks. */\nconst DEFAULT_SOURCE = BUILT_IN_SOURCE;\n\n/** Default is_default flag for new tasks. */\nconst DEFAULT_IS_DEFAULT = 0;\n\n/** Value indicating a task is the default for its agent. */\nconst IS_DEFAULT_TRUE = 1;\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Fields required (or optional) when upserting a task. */\nexport interface TaskInsert {\n  id: string;\n  agent_id: string;\n  prompt: string;\n  created_at: number;\n  source?: string;\n  display_name?: string | null;\n  description?: string | null;\n  is_default?: number;\n  tool_overrides?: string | null;\n  model?: string | null;\n  config?: string | null;\n  updated_at?: number | null;\n}\n\n/** Row shape returned from agent_tasks queries (all columns). */\nexport interface TaskRow {\n  id: string;\n  agent_id: string;\n  source: string;\n  display_name: string | null;\n  description: string | null;\n  prompt: string;\n  is_default: number;\n  tool_overrides: string | null;\n  model: string | null;\n  config: string | null;\n  created_at: number;\n  updated_at: number | null;\n}\n\n/** Filter options for `listTasks`. */\nexport interface ListTasksOptions {\n  limit?: number;\n  agent_id?: string;\n  source?: string;\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst TASK_COLUMNS = [\n  'id',\n  'agent_id',\n  'source',\n  'display_name',\n  'description',\n  'prompt',\n  'is_default',\n  'tool_overrides',\n  'model',\n  'config',\n  'created_at',\n  'updated_at',\n] as const;\n\nconst SELECT_COLUMNS = TASK_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Normalize a SQLite result row into a typed TaskRow. */\nfunction toTaskRow(row: Record<string, unknown>): TaskRow {\n  return {\n    id: row.id as string,\n    agent_id: row.agent_id as string,\n    source: (row.source as string) ?? DEFAULT_SOURCE,\n    display_name: (row.display_name as string) ?? null,\n    description: (row.description as string) ?? null,\n    prompt: row.prompt as string,\n    is_default: (row.is_default as number) ?? DEFAULT_IS_DEFAULT,\n    tool_overrides: (row.tool_overrides as string) ?? null,\n    model: (row.model as string) ?? null,\n    config: (row.config as string) ?? null,\n    created_at: row.created_at as number,\n    updated_at: (row.updated_at as number) ?? null,\n  };\n}\n\n/** Serialize a TaskConfig to a JSON string for storage. */\nexport function serializeConfig(config: TaskConfig | null): string | null {\n  if (!config) return null;\n  return JSON.stringify(config);\n}\n\n/** Deserialize a TaskConfig from a stored JSON string. Returns null on failure. */\nexport function deserializeConfig(raw: string | null): TaskConfig | null {\n  if (!raw) return null;\n  try {\n    return JSON.parse(raw) as TaskConfig;\n  } catch {\n    return null;\n  }\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Upsert a task — insert or update on conflict.\n *\n * On conflict the row is updated with the values from `data`.\n * This is the idempotent upsert — calling twice with the same data\n * produces the same result.\n */\nexport function upsertTask(data: TaskInsert): TaskRow {\n  const db = getDatabase();\n\n  db.prepare(\n    `INSERT INTO agent_tasks (\n       id, agent_id, source, display_name, description,\n       prompt, is_default, tool_overrides, model, config,\n       created_at, updated_at\n     ) VALUES (\n       ?, ?, ?, ?, ?,\n       ?, ?, ?, ?, ?,\n       ?, ?\n     )\n     ON CONFLICT (id) DO UPDATE SET\n       agent_id       = EXCLUDED.agent_id,\n       source         = EXCLUDED.source,\n       display_name   = EXCLUDED.display_name,\n       description    = EXCLUDED.description,\n       prompt         = EXCLUDED.prompt,\n       is_default     = EXCLUDED.is_default,\n       tool_overrides = EXCLUDED.tool_overrides,\n       model          = EXCLUDED.model,\n       config         = EXCLUDED.config,\n       updated_at     = EXCLUDED.updated_at`,\n  ).run(\n    data.id,\n    data.agent_id,\n    data.source ?? DEFAULT_SOURCE,\n    data.display_name ?? null,\n    data.description ?? null,\n    data.prompt,\n    data.is_default ?? DEFAULT_IS_DEFAULT,\n    data.tool_overrides ?? null,\n    data.model ?? null,\n    data.config ?? null,\n    data.created_at,\n    data.updated_at ?? null,\n  );\n\n  return toTaskRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM agent_tasks WHERE id = ?`).get(data.id) as Record<string, unknown>,\n  );\n}\n\n/**\n * Retrieve a single task by id.\n *\n * @returns the task row, or null if not found.\n */\nexport function getTask(id: string): TaskRow | null {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT ${SELECT_COLUMNS} FROM agent_tasks WHERE id = ?`,\n  ).get(id) as Record<string, unknown> | undefined;\n\n  if (!row) return null;\n  return toTaskRow(row);\n}\n\n/**\n * List tasks with optional filters, ordered by created_at ASC.\n */\nexport function listTasks(\n  options: ListTasksOptions = {},\n): TaskRow[] {\n  const db = getDatabase();\n\n  const conditions: string[] = [];\n  const params: unknown[] = [];\n\n  if (options.agent_id !== undefined) {\n    conditions.push(`agent_id = ?`);\n    params.push(options.agent_id);\n  }\n\n  if (options.source !== undefined) {\n    conditions.push(`source = ?`);\n    params.push(options.source);\n  }\n\n  const where = conditions.length > 0 ? `WHERE ${conditions.join(' AND ')}` : '';\n  const limit = options.limit ?? DEFAULT_LIST_LIMIT;\n\n  params.push(limit);\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM agent_tasks\n     ${where}\n     ORDER BY created_at ASC\n     LIMIT ?`,\n  ).all(...params) as Record<string, unknown>[];\n\n  return rows.map(toTaskRow);\n}\n\n/**\n * Get the default task for an agent.\n *\n * @returns the default task row, or null if no default exists.\n */\nexport function getDefaultTask(\n  agentId: string,\n): TaskRow | null {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM agent_tasks\n     WHERE agent_id = ? AND is_default = ?\n     LIMIT 1`,\n  ).get(agentId, IS_DEFAULT_TRUE) as Record<string, unknown> | undefined;\n\n  if (!row) return null;\n  return toTaskRow(row);\n}\n\n/**\n * List all tasks for an agent, ordered by display_name ASC.\n *\n * Rows with a null display_name sort before named tasks.\n */\nexport function listTasksByAgent(\n  agentId: string,\n): TaskRow[] {\n  const db = getDatabase();\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM agent_tasks\n     WHERE agent_id = ?\n     ORDER BY display_name ASC`,\n  ).all(agentId) as Record<string, unknown>[];\n\n  return rows.map(toTaskRow);\n}\n\n/**\n * Delete a task by id.\n *\n * Built-in tasks (source = 'built-in') are protected and cannot be deleted.\n *\n * @returns true if the task was deleted, false if not found or protected.\n */\nexport function deleteTask(id: string): boolean {\n  const db = getDatabase();\n  const info = db.prepare(\n    `DELETE FROM agent_tasks WHERE id = ? 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package/dist/chunk-PSYLKCWQ.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/config/loader.ts","../src/config/schema.ts","../src/config/migrations.ts"],"sourcesContent":["import fs from 'node:fs';\nimport path from 'node:path';\nimport YAML from 'yaml';\nimport { MycoConfigSchema, type MycoConfig, type BackupConfig, type TeamConfig } from './schema.js';\nimport { runMigrations, CURRENT_MIGRATION_VERSION } from './migrations.js';\n\nexport const CONFIG_FILENAME = 'myco.yaml';\n\nexport function loadConfig(vaultDir: string): MycoConfig {\n  const configPath = path.join(vaultDir, CONFIG_FILENAME);\n\n  if (!fs.existsSync(configPath)) {\n    throw new Error(`myco.yaml not found in ${vaultDir}`);\n  }\n\n  const raw = fs.readFileSync(configPath, 'utf-8');\n  const parsed = YAML.parse(raw) as Record<string, unknown>;\n\n  // Detect v1 config and guide migration\n  if (parsed.version === 1 || (parsed.intelligence as Record<string, unknown>)?.backend) {\n    throw new Error(\n      'Myco config uses v1 format. Run /myco:setup-llm to reconfigure for v2.',\n    );\n  }\n\n  // --- v2 → v3 migration ---\n  let v2Migrated = false;\n  if (parsed.version === 2) {\n    // Extract intelligence.embedding to top-level embedding\n    const intel = parsed.intelligence as Record<string, unknown> | undefined;\n    const embeddingConfig = intel?.embedding as Record<string, unknown> | undefined;\n    if (embeddingConfig && !parsed.embedding) {\n      // Map v2 'lm-studio' to v3 'openai-compatible' for embedding provider\n      if (embeddingConfig.provider === 'lm-studio') {\n        embeddingConfig.provider = 'openai-compatible';\n      }\n      parsed.embedding = embeddingConfig;\n    }\n\n    // Keep daemon.port and daemon.log_level, drop grace_period and max_log_size\n    const daemon = parsed.daemon as Record<string, unknown> | undefined;\n    if (daemon) {\n      const { port, log_level } = daemon;\n      parsed.daemon = { port: port ?? null, log_level: log_level ?? 'info' };\n    }\n\n    // Keep capture basics, drop token-related fields; migrate artifact_watch → plan_dirs\n    const capture = parsed.capture as Record<string, unknown> | undefined;\n    if (capture) {\n      const { transcript_paths, artifact_watch, plan_dirs, artifact_extensions, buffer_max_events } = capture;\n      parsed.capture = {\n        transcript_paths,\n        plan_dirs: plan_dirs ?? artifact_watch,\n        artifact_extensions,\n        buffer_max_events,\n      };\n    }\n\n    // Drop removed top-level sections\n    delete parsed.intelligence;\n    delete parsed.context;\n    delete parsed.team;\n    delete parsed.digest;\n    delete parsed.pipeline;\n\n    // Set version to 3\n    parsed.version = 3;\n    v2Migrated = true;\n\n    process.stderr.write('[myco migration] Migrated config from v2 to v3\\n');\n  }\n\n  // Run numbered migrations (for v3+ forward migrations)\n  const migrationsRan = runMigrations(parsed, vaultDir, (msg) => {\n    process.stderr.write(`[myco migration] ${msg}\\n`);\n  });\n\n  // Parse with Zod to fill in defaults for new config sections\n  const config = MycoConfigSchema.parse(parsed);\n\n  // Write back if v2→v3 migration ran, numbered migrations ran, or new defaults were added\n  const needsWrite = v2Migrated\n    || migrationsRan\n    || (parsed.config_version as number ?? 0) < CURRENT_MIGRATION_VERSION\n    || parsed.version !== config.version;\n\n  if (needsWrite) {\n    const fullConfig = JSON.parse(JSON.stringify(config)) as Record<string, unknown>;\n    fs.writeFileSync(configPath, YAML.stringify(fullConfig), 'utf-8');\n  }\n\n  return config;\n}\n\nexport function saveConfig(vaultDir: string, config: MycoConfig): void {\n  // Validate before writing — OAK lesson: validate on write, not just read\n  const validated = MycoConfigSchema.parse(config);\n\n  const configPath = path.join(vaultDir, CONFIG_FILENAME);\n  fs.mkdirSync(vaultDir, { recursive: true });\n  fs.writeFileSync(configPath, YAML.stringify(validated), 'utf-8');\n}\n\nexport function updateConfig(\n  vaultDir: string,\n  fn: (config: MycoConfig) => MycoConfig,\n): MycoConfig {\n  const current = loadConfig(vaultDir);\n  const updated = fn(current);\n  saveConfig(vaultDir, updated);\n  return updated;\n}\n\nexport function updateBackupConfig(\n  vaultDir: string,\n  backup: Partial<BackupConfig>,\n): MycoConfig {\n  return updateConfig(vaultDir, (config) => ({\n    ...config,\n    backup: { ...config.backup, ...backup },\n  }));\n}\n\nexport function updateTeamConfig(\n  vaultDir: string,\n  team: Partial<TeamConfig>,\n): MycoConfig {\n  return updateConfig(vaultDir, (config) => ({\n    ...config,\n    team: { ...config.team, ...team },\n  }));\n}\n","import { z } from 'zod';\nimport { SCHEDULABLE_POWER_STATES } from '@myco/constants.js';\n\nconst EmbeddingProviderSchema = z.object({\n  provider: z.enum(['ollama', 'openai-compatible', 'openrouter', 'openai']).default('ollama'),\n  model: z.string().default('bge-m3'),\n  base_url: z.string().url().optional(),\n});\n\nconst DaemonSchema = z.object({\n  port: z.number().int().min(1024).max(65535).nullable().default(null),\n  log_level: z.enum(['debug', 'info', 'warn', 'error']).default('info'),\n  log_retention_days: z.number().int().min(1).max(365).default(30),\n});\n\nconst CaptureSchema = z.object({\n  transcript_paths: z.array(z.string()).default([]),\n  plan_dirs: z.array(z.string()).default([]),\n  artifact_extensions: z.array(z.string()).default(['.md']),\n  buffer_max_events: z.number().int().positive().default(500),\n});\n\n/** Provider config shape used in both task-level and phase-level overrides. */\nconst ProviderOverrideSchema = z.object({\n  type: z.enum(['cloud', 'ollama', 'lmstudio']),\n  base_url: z.string().optional(),\n  model: z.string().optional(),\n  /** Context window size for local models (Ollama num_ctx, LM Studio context_length). */\n  context_length: z.number().int().positive().optional(),\n});\n\n/** Per-phase overrides within a task — keyed by phase name. */\nconst PhaseOverrideSchema = z.object({\n  provider: ProviderOverrideSchema.optional(),\n  model: z.string().optional(),\n  maxTurns: z.number().int().positive().optional(),\n});\n\n/** Per-task schedule override — partial, merges with YAML defaults. */\nconst ScheduleOverrideSchema = z.object({\n  enabled: z.boolean().optional(),\n  intervalSeconds: z.number().int().positive().optional(),\n  runIn: z.array(z.enum([...SCHEDULABLE_POWER_STATES])).optional(),\n  preCondition: z.enum(['has-unprocessed-batches', 'has-active-skills', 'has-approved-candidates']).optional(),\n}).optional();\n\n/** Per-task config override — stored in myco.yaml under agent.tasks. */\nconst TaskProviderOverrideSchema = z.object({\n  provider: ProviderOverrideSchema.optional(),\n  model: z.string().optional(),\n  maxTurns: z.number().int().positive().optional(),\n  timeoutSeconds: z.number().int().positive().optional(),\n  phases: z.record(z.string(), PhaseOverrideSchema).optional(),\n  schedule: ScheduleOverrideSchema,\n});\n\nconst ContextSchema = z.object({\n  /** Which digest tier to inject at session start. */\n  digest_tier: z.number().int().default(5000),\n  /** Enable semantic spore search on each user prompt. */\n  prompt_search: z.boolean().default(true),\n  /** Max spores to inject per prompt (0-10). */\n  prompt_max_spores: z.number().int().min(0).max(10).default(3),\n});\n\nconst AgentSchema = z.object({\n  /** Number of batches between event-driven summary triggers (0 to disable). */\n  summary_batch_interval: z.number().int().min(0).default(5),\n  /** Global default provider — applies to all tasks unless overridden per-task. */\n  provider: ProviderOverrideSchema.optional(),\n  /** Global default model — applies to all tasks unless overridden per-task. */\n  model: z.string().optional(),\n  /** Per-task overrides keyed by task name. */\n  tasks: z.record(z.string(), TaskProviderOverrideSchema).optional(),\n});\n\nconst BackupSchema = z.object({\n  /** Override directory for backup files. Supports ~ for home directory. When unset, defaults to .myco/backups. */\n  dir: z.string().optional(),\n});\n\nconst TeamSchema = z.object({\n  /** Whether team sync is enabled. */\n  enabled: z.boolean().default(false),\n  /** Cloudflare Worker URL for team sync. */\n  worker_url: z.string().url().optional(),\n  /** Team identifier for sync grouping. */\n  team_id: z.string().optional(),\n  /** Sync interval in minutes. */\n  interval_minutes: z.number().int().min(1).max(1440).default(15),\n});\n\nconst SkillsSchema = z.object({\n  /** Auto-generate candidates above this confidence score. */\n  confidence_threshold: z.number().min(0).max(1).default(0.7),\n  /** Flag unused skills after this many days. */\n  usage_stale_days: z.number().int().positive().default(30),\n});\n\nconst NotificationsSchema = z.object({\n  /** Master switch — disables all notifications when false. */\n  enabled: z.boolean().default(true),\n  /** Allow browser system notifications (Notification API). */\n  system_notifications: z.boolean().default(false),\n  /** Default display mode for new notification types. */\n  default_mode: z.enum(['banner', 'summary']).default('banner'),\n  /** Per-domain settings. Keys are domain names from the registry. */\n  domains: z.record(z.string(), z.object({\n    enabled: z.boolean().default(true),\n    /** Override display mode for this domain. Omit to use global default_mode. */\n    mode: z.enum(['banner', 'summary']).optional(),\n  })).default({}),\n});\n\nexport const MycoConfigSchema = z.preprocess(\n  (raw: unknown) => {\n    if (raw && typeof raw === 'object' && 'curation' in raw && !('agent' in raw)) {\n      const { curation, ...rest } = raw as Record<string, unknown>;\n      return { ...rest, agent: curation };\n    }\n    return raw;\n  },\n  z.object({\n    version: z.literal(3),\n    config_version: z.number().int().nonnegative().default(0),\n    embedding: EmbeddingProviderSchema.default(() => EmbeddingProviderSchema.parse({})),\n    daemon: DaemonSchema.default(() => DaemonSchema.parse({})),\n    capture: CaptureSchema.default(() => CaptureSchema.parse({})),\n    agent: AgentSchema.default(() => AgentSchema.parse({})),\n    context: ContextSchema.default(() => ContextSchema.parse({})),\n    backup: BackupSchema.default(() => BackupSchema.parse({})),\n    team: TeamSchema.default(() => TeamSchema.parse({})),\n    skills: SkillsSchema.default(() => SkillsSchema.parse({})),\n    notifications: NotificationsSchema.default(() => NotificationsSchema.parse({})),\n  }),\n);\n\nexport type MycoConfig = z.output<typeof MycoConfigSchema>;\nexport type EmbeddingProviderConfig = z.infer<typeof EmbeddingProviderSchema>;\nexport type TaskProviderOverride = z.infer<typeof TaskProviderOverrideSchema>;\nexport type PhaseOverride = z.infer<typeof PhaseOverrideSchema>;\nexport type ScheduleOverride = z.infer<typeof ScheduleOverrideSchema>;\nexport type ContextConfig = z.infer<typeof ContextSchema>;\nexport type BackupConfig = z.infer<typeof BackupSchema>;\nexport type TeamConfig = z.infer<typeof TeamSchema>;\nexport type SkillsConfig = z.infer<typeof SkillsSchema>;\nexport type NotificationsConfig = z.infer<typeof NotificationsSchema>;\n","/**\n * Config and vault migrations — run once per version, tracked by config_version.\n *\n * Each migration has a version number, a name, and a function that receives\n * the raw parsed YAML doc and the vault directory. Migrations run in order\n * and are skipped if config_version is already past them.\n *\n * To add a new migration:\n * 1. Add an entry to MIGRATIONS with the next version number\n * 2. Write the migrate function — it receives the mutable doc and vaultDir\n * 3. The framework handles version tracking and writing the config back\n */\n\nimport fs from 'node:fs';\nimport path from 'node:path';\n\nexport interface Migration {\n  version: number;\n  name: string;\n  migrate: (doc: Record<string, unknown>, vaultDir: string) => void;\n}\n\n/** Regex matching both quoted and unquoted YAML: type: memory, type: \"memory\", type: 'memory' */\nconst MEMORY_TYPE_PATTERN = /type:\\s*[\"']?memory[\"']?/g;\n\nexport const MIGRATIONS: Migration[] = [\n  {\n    version: 1,\n    name: 'rename-memories-to-spores',\n    migrate: (doc, vaultDir) => {\n      // Config: rename context.layers.memories → context.layers.spores\n      const context = doc.context as Record<string, unknown> | undefined;\n      const layers = context?.layers as Record<string, unknown> | undefined;\n      if (layers && 'memories' in layers && !('spores' in layers)) {\n        layers.spores = layers.memories;\n        delete layers.memories;\n      }\n\n      // Vault: rename memories/ directory → spores/\n      const memoriesDir = path.join(vaultDir, 'memories');\n      const sporesDir = path.join(vaultDir, 'spores');\n\n      if (!fs.existsSync(memoriesDir)) return;\n\n      if (fs.existsSync(sporesDir)) {\n        // Both exist (interrupted migration) — merge remaining files\n        const moveRemaining = (srcDir: string, destDir: string): void => {\n          for (const entry of fs.readdirSync(srcDir, { withFileTypes: true })) {\n            const srcPath = path.join(srcDir, entry.name);\n            const destPath = path.join(destDir, entry.name);\n            if (entry.isDirectory()) {\n              if (!fs.existsSync(destPath)) fs.mkdirSync(destPath, { recursive: true });\n              moveRemaining(srcPath, destPath);\n            } else if (!fs.existsSync(destPath)) {\n              fs.renameSync(srcPath, destPath);\n            }\n          }\n        };\n        moveRemaining(memoriesDir, sporesDir);\n        fs.rmSync(memoriesDir, { recursive: true, force: true });\n      } else {\n        fs.renameSync(memoriesDir, sporesDir);\n      }\n\n      // Update frontmatter type: memory → type: spore (handles quoted and unquoted)\n      const walkUpdate = (dir: string): void => {\n        for (const entry of fs.readdirSync(dir, { withFileTypes: true })) {\n          const fullPath = path.join(dir, entry.name);\n          if (entry.isDirectory()) { walkUpdate(fullPath); continue; }\n          if (!entry.name.endsWith('.md')) continue;\n          const content = fs.readFileSync(fullPath, 'utf-8');\n          MEMORY_TYPE_PATTERN.lastIndex = 0;\n          if (MEMORY_TYPE_PATTERN.test(content)) {\n            MEMORY_TYPE_PATTERN.lastIndex = 0;\n            fs.writeFileSync(fullPath, content.replace(MEMORY_TYPE_PATTERN, 'type: spore'));\n          }\n        }\n      };\n      walkUpdate(sporesDir);\n\n      // Legacy: update wikilink references in Markdown files (pre-SQLite migration): [[memories/...]] → [[spores/...]]\n      const walkLinks = (dir: string): void => {\n        for (const entry of fs.readdirSync(dir, { withFileTypes: true })) {\n          const fullPath = path.join(dir, entry.name);\n          if (entry.isDirectory()) { walkLinks(fullPath); continue; }\n          if (!entry.name.endsWith('.md')) continue;\n          const content = fs.readFileSync(fullPath, 'utf-8');\n          if (content.includes('memories/')) {\n            fs.writeFileSync(fullPath, content.replace(/memories\\//g, 'spores/'));\n          }\n        }\n      };\n      walkLinks(vaultDir);\n    },\n  },\n  {\n    version: 2,\n    name: 'consolidation-boolean-to-object',\n    migrate: (doc) => {\n      const digest = doc.digest as Record<string, unknown> | undefined;\n      if (!digest) return;\n\n      const consolidation = digest.consolidation;\n      if (typeof consolidation === 'boolean') {\n        digest.consolidation = { enabled: consolidation, max_tokens: 2048 };\n      }\n    },\n  },\n  {\n    version: 3,\n    name: 'schedule-to-task-level',\n    migrate(doc: Record<string, unknown>, _vaultDir: string): void {\n      const agent = (doc.agent ?? {}) as Record<string, unknown>;\n      const skills = (doc.skills ?? {}) as Record<string, unknown>;\n      const tasks = ((agent.tasks ?? {}) as Record<string, Record<string, unknown>>);\n\n      /** Default interval for full-intelligence task (5 minutes). */\n      const DEFAULT_INTELLIGENCE_INTERVAL_SECONDS = 300;\n\n      const VALID_SCHEDULE_STATES = ['active', 'idle', 'sleep'] as const;\n\n      // Migrate agent.auto_run + interval_seconds → full-intelligence schedule\n      if ('auto_run' in agent || 'interval_seconds' in agent) {\n        const fiTask = tasks['full-intelligence'] ?? {};\n        fiTask.schedule = {\n          enabled: agent.auto_run ?? true,\n          intervalSeconds: agent.interval_seconds ?? DEFAULT_INTELLIGENCE_INTERVAL_SECONDS,\n        };\n        tasks['full-intelligence'] = fiTask;\n        delete agent.auto_run;\n        delete agent.interval_seconds;\n      }\n\n      // Migrate skills.auto_survey → skill-survey schedule\n      if ('auto_survey' in skills) {\n        const ssTask = tasks['skill-survey'] ?? {};\n        ssTask.schedule = {\n          enabled: skills.auto_survey ?? false,\n        };\n        tasks['skill-survey'] = ssTask;\n        delete skills.auto_survey;\n      }\n\n      // Migrate skills.auto_evolve + evolve_cadence → skill-evolve schedule\n      if ('auto_evolve' in skills || 'evolve_cadence' in skills) {\n        const seTask = tasks['skill-evolve'] ?? {};\n        const schedule: Record<string, unknown> = {\n          enabled: skills.auto_evolve ?? false,\n        };\n        if ('evolve_cadence' in skills) {\n          const cadence = String(skills.evolve_cadence);\n          schedule.runIn = VALID_SCHEDULE_STATES.includes(cadence as typeof VALID_SCHEDULE_STATES[number])\n            ? [cadence]\n            : ['idle']; // fallback to safe default\n        }\n        seTask.schedule = schedule;\n        tasks['skill-evolve'] = seTask;\n        delete skills.auto_evolve;\n        delete skills.evolve_cadence;\n      }\n\n      // Write back tasks if any were created\n      if (Object.keys(tasks).length > 0) {\n        agent.tasks = tasks;\n      }\n      doc.agent = agent;\n      doc.skills = skills;\n    },\n  },\n];\n\n/** Current migration version — the highest version in MIGRATIONS. */\nexport const CURRENT_MIGRATION_VERSION = MIGRATIONS[MIGRATIONS.length - 1]?.version ?? 0;\n\n/**\n * Run all pending migrations on the raw config doc.\n * Returns true if any migrations ran (caller should reindex).\n */\nexport function runMigrations(\n  doc: Record<string, unknown>,\n  vaultDir: string,\n  log?: (message: string) => void,\n): boolean {\n  const currentVersion = (doc.config_version as number) ?? 0;\n  let ran = false;\n\n  for (const migration of MIGRATIONS) {\n    if (migration.version <= currentVersion) continue;\n\n    migration.migrate(doc, vaultDir);\n    doc.config_version = migration.version;\n    ran = true;\n  }\n\n  if (ran) {\n    const from = currentVersion;\n    const to = (doc.config_version as number) ?? 0;\n    log?.(`Migrated config from v${from} to v${to}`);\n  }\n\n  return 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package/dist/chunk-S66YG6QK.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/daemon/team-context.ts","../src/db/queries/team-outbox.ts"],"sourcesContent":["/**\n * Module-level state for team sync.\n *\n * Initialized once by the daemon on startup. Query modules import\n * `isTeamSyncEnabled()` and `getTeamMachineId()` to decide whether\n * to enqueue outbox records on write.\n */\n\nimport { SYNC_PROTOCOL_VERSION, DEFAULT_MACHINE_ID } from '@myco/constants.js';\n\n// ---------------------------------------------------------------------------\n// Module state\n// ---------------------------------------------------------------------------\n\nlet teamSyncEnabled = false;\nlet teamMachineId = DEFAULT_MACHINE_ID;\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Initialize team context. Called once on daemon startup.\n */\nexport function initTeamContext(enabled: boolean, machineId: string): void {\n  teamSyncEnabled = enabled;\n  teamMachineId = machineId;\n}\n\n/**\n * Whether team sync is currently enabled.\n *\n * Query modules check this before enqueuing outbox records.\n */\nexport function isTeamSyncEnabled(): boolean {\n  return teamSyncEnabled;\n}\n\n/**\n * The machine ID for this instance.\n */\nexport function getTeamMachineId(): string {\n  return teamMachineId;\n}\n\n/**\n * The sync protocol version in use.\n */\nexport function getTeamSyncProtocolVersion(): number {\n  return SYNC_PROTOCOL_VERSION;\n}\n\n/**\n * Reset team context (for testing).\n */\nexport function resetTeamContext(): void {\n  teamSyncEnabled = false;\n  teamMachineId = DEFAULT_MACHINE_ID;\n}\n","/**\n * Team outbox CRUD query helpers.\n *\n * The outbox pattern: write paths enqueue records here when team sync is enabled.\n * The sync client flushes pending records in batches to the Cloudflare Worker.\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport { getDatabase } from '@myco/db/client.js';\nimport { isTeamSyncEnabled, getTeamMachineId } from '@myco/daemon/team-context.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Max records returned per listPending call. */\nconst BURST_BATCH_SIZE = 200;\n\n/** Age in seconds after which sent records are pruned (24 hours). */\nconst SENT_PRUNE_AGE_SECONDS = 86_400;\n\n/** Milliseconds-per-second multiplier for epoch math. */\nconst MS_PER_SECOND = 1000;\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Fields required when enqueuing an outbox record. */\nexport interface OutboxInsert {\n  table_name: string;\n  row_id: string;\n  operation?: string;\n  payload: string;\n  machine_id: string;\n  created_at: number;\n}\n\n/** Row shape returned from outbox queries. */\nexport interface OutboxRow {\n  id: number;\n  table_name: string;\n  row_id: string;\n  operation: string;\n  payload: string;\n  machine_id: string;\n  created_at: number;\n  sent_at: number | null;\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst OUTBOX_COLUMNS = [\n  'id',\n  'table_name',\n  'row_id',\n  'operation',\n  'payload',\n  'machine_id',\n  'created_at',\n  'sent_at',\n] as const;\n\nconst SELECT_COLUMNS = OUTBOX_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Normalize a SQLite result row into a typed OutboxRow. */\nfunction toOutboxRow(row: Record<string, unknown>): OutboxRow {\n  return {\n    id: row.id as number,\n    table_name: row.table_name as string,\n    row_id: row.row_id as string,\n    operation: row.operation as string,\n    payload: row.payload as string,\n    machine_id: row.machine_id as string,\n    created_at: row.created_at as number,\n    sent_at: (row.sent_at as number) ?? null,\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Convenience helper — used by query modules\n// ---------------------------------------------------------------------------\n\n/**\n * Enqueue a row for team sync if sync is enabled.\n *\n * Centralizes the if-enabled / enqueue / serialize pattern that every\n * write-path query module previously duplicated inline.\n */\nexport function syncRow(tableName: string, row: { id: string | number; created_at?: number }): void {\n  if (!isTeamSyncEnabled()) return;\n  enqueueOutbox({\n    table_name: tableName,\n    row_id: String(row.id),\n    payload: JSON.stringify(row),\n    machine_id: getTeamMachineId(),\n    created_at: row.created_at ?? Math.floor(Date.now() / 1000),\n  });\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Enqueue a record into the team outbox for later sync.\n *\n * Inserted with `sent_at = NULL` (pending).\n */\nexport function enqueueOutbox(data: OutboxInsert): OutboxRow {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `INSERT INTO team_outbox (\n       table_name, row_id, operation, payload, machine_id, created_at\n     ) VALUES (?, ?, ?, ?, ?, ?)`,\n  ).run(\n    data.table_name,\n    data.row_id,\n    data.operation ?? 'upsert',\n    data.payload,\n    data.machine_id,\n    data.created_at,\n  );\n\n  const id = Number(info.lastInsertRowid);\n\n  return toOutboxRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM team_outbox WHERE id = ?`).get(id) as Record<string, unknown>,\n  );\n}\n\n/**\n * List pending outbox records (oldest-first).\n *\n * Uses burst sizing: fetches BURST_BATCH_SIZE rows and returns them all.\n * If fewer than BURST_THRESHOLD rows come back, callers get a normal-size\n * batch; if more, the full burst. This avoids a separate COUNT query.\n */\nexport function listPending(limit?: number): OutboxRow[] {\n  const db = getDatabase();\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM team_outbox\n     WHERE sent_at IS NULL\n     ORDER BY created_at ASC\n     LIMIT ?`,\n  ).all(limit ?? BURST_BATCH_SIZE) as Record<string, unknown>[];\n\n  return rows.map(toOutboxRow);\n}\n\n/**\n * Mark outbox records as sent by setting sent_at.\n */\nexport function markSent(ids: number[], sentAt: number): void {\n  if (ids.length === 0) return;\n\n  const db = getDatabase();\n  const placeholders = ids.map(() => '?').join(', ');\n\n  db.prepare(\n    `UPDATE team_outbox\n     SET sent_at = ?\n     WHERE id IN (${placeholders})`,\n  ).run(sentAt, ...ids);\n}\n\n/**\n * Reset sent_at to NULL for records that need to be retried.\n *\n * This allows the sync client to re-enqueue specific records for retry.\n */\nexport function markForRetry(ids: number[]): void {\n  if (ids.length === 0) return;\n\n  const db = getDatabase();\n  const placeholders = ids.map(() => '?').join(', ');\n\n  db.prepare(\n    `UPDATE team_outbox\n     SET sent_at = NULL\n     WHERE id IN (${placeholders})`,\n  ).run(...ids);\n}\n\n/**\n * Prune old outbox records.\n *\n * Removes sent records older than 24 hours.\n *\n * @returns the number of records deleted.\n */\nexport function pruneOld(): number {\n  const db = getDatabase();\n  const cutoff = Math.floor(Date.now() / MS_PER_SECOND) - SENT_PRUNE_AGE_SECONDS;\n\n  const info = db.prepare(\n    `DELETE FROM team_outbox\n     WHERE sent_at IS NOT NULL AND sent_at < ?`,\n  ).run(cutoff);\n\n  return info.changes;\n}\n\n/**\n * Count pending (unsent) outbox records.\n */\nexport function countPending(): number {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT COUNT(*) as count FROM team_outbox WHERE sent_at IS NULL`,\n  ).get() as { count: number };\n\n  return row.count;\n}\n\n// ---------------------------------------------------------------------------\n// Source-row sync bookkeeping\n// ---------------------------------------------------------------------------\n\n/** Tables eligible for backfill/sync (must have id, machine_id, synced_at columns). */\nconst BACKFILL_TABLES = [\n  'sessions',\n  'prompt_batches',\n  'spores',\n  'entities',\n  'graph_edges',\n  'resolution_events',\n  'plans',\n  'artifacts',\n  'digest_extracts',\n  'skill_candidates',\n  'skill_records',\n] as const;\n// entity_mentions excluded — no `id` column (composite key entity_id+note_id+note_type)\n// skill_usage excluded — no `synced_at` column (syncs via syncRow on insert)\n\nconst BACKFILL_TABLE_SET = new Set<string>(BACKFILL_TABLES);\n\n/**\n * Mark source rows as synced after successful outbox flush.\n *\n * Groups outbox records by table_name, then sets `synced_at` on the\n * corresponding source rows. This closes the re-enqueue loop: once\n * synced_at is non-NULL, `backfillUnsynced` skips the row even after\n * the outbox entry is pruned.\n */\nexport function markSourceRowsSynced(records: OutboxRow[], syncedAt: number): void {\n  const db = getDatabase();\n\n  // Group row_ids by table\n  const byTable = new Map<string, string[]>();\n  for (const rec of records) {\n    if (!BACKFILL_TABLE_SET.has(rec.table_name)) continue;\n    const ids = byTable.get(rec.table_name) ?? [];\n    ids.push(rec.row_id);\n    byTable.set(rec.table_name, ids);\n  }\n\n  for (const [table, ids] of byTable) {\n    const placeholders = ids.map(() => '?').join(', ');\n    db.prepare(\n      `UPDATE ${table} SET synced_at = ? 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package/dist/chunk-TNCBMGWB.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/symbionts/installer.ts"],"sourcesContent":["import type { SymbiontManifest } from './manifest-schema.js';\nimport fs from 'node:fs';\nimport path from 'node:path';\n\n/** Prefix used to identify Myco-owned hooks in settings files. */\nconst MYCO_HOOK_COMMAND_PREFIX = 'myco-run';\nconst MYCO_HOOK_GUARD_PREFIX = 'node .agents/myco-hook.cjs';\n\n/** Check if a command string belongs to Myco (old or new guard format). */\nfunction isMycoHookCommand(command: string): boolean {\n  return command.startsWith(MYCO_HOOK_COMMAND_PREFIX) || command.startsWith(MYCO_HOOK_GUARD_PREFIX);\n}\n\n/**\n * Check if a hook group is Myco-owned.\n * Handles both nested format (Claude Code, Codex, etc.) and flat format (Windsurf).\n *\n * Nested: { hooks: [{ command: \"node .agents/myco-hook.cjs ...\" }] }\n * Flat:   { command: \"node .agents/myco-hook.cjs ...\" }\n */\nfunction isMycoHookGroup(group: Record<string, unknown>): boolean {\n  // Nested format: { hooks: [{ command: \"...\" }] }\n  if (Array.isArray(group.hooks) && group.hooks.some((h: { command?: string }) => h.command && isMycoHookCommand(h.command))) return true;\n  // Flat format: { command: \"...\" }\n  if (typeof group.command === 'string' && isMycoHookCommand(group.command)) return true;\n  return false;\n}\n\n/** Current comment header for Myco-managed .gitignore block. */\nconst GITIGNORE_COMMENT = '# Myco managed (machine-specific)';\n\n/** Legacy comment header — recognized for cleanup during reconciliation. */\nconst GITIGNORE_SKILLS_COMMENT_LEGACY = '# Myco skill symlinks (machine-specific)';\n\n/** Wrangler cache directory created by team sync operations. */\nconst WRANGLER_CACHE_DIR = '.wrangler/';\n\n/** Subdirectory within the package where symbiont templates live. */\nconst TEMPLATES_SUBDIR = 'src/symbionts/templates';\n\n/** Filename of the hook guard template in the templates directory. */\nconst HOOK_GUARD_TEMPLATE_FILENAME = 'hook-guard.cjs';\n\n/** Filename when installed into the project .agents/ directory. */\nconst HOOK_GUARD_INSTALLED_FILENAME = 'myco-hook.cjs';\n\n/** Project-relative path where the hook guard is installed. */\nconst HOOK_GUARD_PROJECT_PATH = `.agents/${HOOK_GUARD_INSTALLED_FILENAME}`;\n\n/** Subdirectory within the package where skills live. */\nconst SKILLS_SUBDIR = 'skills';\n\n/** Canonical cross-agent skills directory. */\nconst CANONICAL_SKILLS_DIR = '.agents/skills';\n\n/** MCP server name used by Myco in all symbiont configurations. */\nexport const MYCO_MCP_SERVER_NAME = 'myco';\n\n/** Marker text used to identify unmodified instruction stubs. */\nconst INSTRUCTIONS_STUB_MARKER = 'Edit AGENTS.md, not this file';\n\n/** Start/end markers for the reference block prepended to existing instruction files. */\nconst INSTRUCTIONS_REF_START = '<!-- myco:agents-ref:start -->';\nconst INSTRUCTIONS_REF_END = '<!-- myco:agents-ref:end -->';\n\n/** Reference block prepended to existing instruction files. */\nconst INSTRUCTIONS_REF_BLOCK = `${INSTRUCTIONS_REF_START}\n> **Project intelligence:** This project uses [Myco](https://myco.sh). The canonical project rules are in [\\`AGENTS.md\\`](AGENTS.md) — read and follow it alongside this file.\n${INSTRUCTIONS_REF_END}\n\n`;\n\nexport interface InstallResult {\n  hooks: boolean;\n  mcp: boolean;\n  skills: boolean;\n  settings: boolean;\n  instructions: boolean;\n}\n\nexport class SymbiontInstaller {\n  constructor(\n    private manifest: SymbiontManifest,\n    private projectRoot: string,\n    private packageRoot: string,\n  ) {}\n\n  /**\n   * Copy the hook-guard script into .agents/myco-hook.cjs.\n   * Returns true if the file was written (or updated); false if skipped or N/A.\n   */\n  installHookGuard(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.hooksTarget) return false;\n\n    const guardTemplate = this.loadHookGuardTemplate();\n    if (!guardTemplate) return false;\n\n    const targetPath = path.join(this.projectRoot, HOOK_GUARD_PROJECT_PATH);\n\n    // Skip if already current\n    try {\n      if (fs.readFileSync(targetPath, 'utf-8') === guardTemplate) return false;\n    } catch { /* doesn't exist — proceed */ }\n\n    fs.mkdirSync(path.dirname(targetPath), { recursive: true });\n    fs.writeFileSync(targetPath, guardTemplate, 'utf-8');\n    return true;\n  }\n\n  /**\n   * Remove the hook-guard script from .agents/myco-hook.cjs.\n   * Returns true if the file was removed; false otherwise.\n   */\n  uninstallHookGuard(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.hooksTarget) return false;\n\n    const targetPath = path.join(this.projectRoot, HOOK_GUARD_PROJECT_PATH);\n    try {\n      fs.unlinkSync(targetPath);\n      return true;\n    } catch {\n      return false;\n    }\n  }\n\n  /** Load the hook-guard template from package root. */\n  private loadHookGuardTemplate(): string | null {\n    const candidates = [\n      path.join(this.packageRoot, TEMPLATES_SUBDIR, HOOK_GUARD_TEMPLATE_FILENAME),\n      path.join(this.packageRoot, 'dist', TEMPLATES_SUBDIR, HOOK_GUARD_TEMPLATE_FILENAME),\n    ];\n    for (const p of candidates) {\n      try { return fs.readFileSync(p, 'utf-8'); } catch { /* try next */ }\n    }\n    return null;\n  }\n\n  /** Load a JSON template file for this symbiont. Returns null if not found. */\n  loadTemplate(name: string): Record<string, unknown> | null {\n    // Check both source layout and dist layout\n    const candidates = [\n      path.join(this.packageRoot, TEMPLATES_SUBDIR, this.manifest.name, `${name}.json`),\n      // tsup preserves the src/ prefix under dist/, so the same subdir works in both layouts\n      path.join(this.packageRoot, 'dist', TEMPLATES_SUBDIR, this.manifest.name, `${name}.json`),\n    ];\n    for (const filePath of candidates) {\n      try {\n        return JSON.parse(fs.readFileSync(filePath, 'utf-8'));\n      } catch { /* not found or malformed — try next */ }\n    }\n    return null;\n  }\n\n  /** Run all registration steps. */\n  install(): InstallResult {\n    const reg = this.manifest.registration;\n    // Install hook guard before hooks so the guard script is in place when hooks reference it\n    this.installHookGuard();\n    const result = this.shouldBatchJsonTargets(reg)\n      ? this.installBatchedJson(reg!)\n      : {\n          hooks: this.installHooks(),\n          mcp: this.installMcp(),\n          skills: this.installSkills(),\n          settings: this.installSettings(),\n          instructions: this.installInstructions(),\n        };\n    this.updateGitignore();\n    return result;\n  }\n\n  /**\n   * Check if ALL non-null JSON targets share the same file (e.g., Gemini).\n   * Only batches when every target resolves to one path — partial overlaps\n   * (e.g., Claude Code: hooks+settings share but MCP is separate) use normal path.\n   */\n  private shouldBatchJsonTargets(reg: typeof this.manifest.registration): boolean {\n    if (!reg) return false;\n    const mcpFormat = reg.mcpFormat ?? 'json';\n    if (mcpFormat !== 'json') return false;\n    const targets = [reg.hooksTarget, reg.mcpTarget, reg.settingsTarget].filter(Boolean);\n    return targets.length > 1 && new Set(targets).size === 1;\n  }\n\n  /**\n   * Batched install for agents where hooks, MCP, and settings share one JSON file.\n   * Single read → apply all transforms in memory → single write.\n   */\n  private installBatchedJson(reg: NonNullable<typeof this.manifest.registration>): InstallResult {\n    const targetPath = path.join(this.projectRoot, reg.hooksTarget ?? reg.mcpTarget ?? reg.settingsTarget!);\n    let data = readJsonFile(targetPath);\n    let hooks = false, mcp = false, settings = false;\n\n    // Apply hooks transform\n    const hooksTemplate = reg.hooksTarget ? this.loadTemplate('hooks') : null;\n    if (hooksTemplate) {\n      const existingHooks = (data.hooks ?? {}) as Record<string, unknown[]>;\n      const mergedHooks: Record<string, unknown[]> = {};\n      for (const [event, groups] of Object.entries(existingHooks)) {\n        const nonMyco = (groups as Array<Record<string, unknown>>).filter((g) => !isMycoHookGroup(g));\n        if (nonMyco.length > 0) mergedHooks[event] = nonMyco;\n      }\n      for (const [event, groups] of Object.entries(hooksTemplate)) {\n        mergedHooks[event] = [...(mergedHooks[event] ?? []), ...(groups as unknown[])];\n      }\n      data.hooks = mergedHooks;\n      hooks = true;\n    }\n\n    // Apply MCP transform\n    const mcpTemplate = reg.mcpTarget ? this.loadTemplate('mcp') : null;\n    if (mcpTemplate) {\n      const servers = (data.mcpServers ?? {}) as Record<string, unknown>;\n      for (const [name, def] of Object.entries(mcpTemplate)) {\n        servers[name] = def;\n      }\n      data.mcpServers = servers;\n      mcp = true;\n    }\n\n    // Apply settings transform\n    const settingsTemplate = reg.settingsTarget ? this.loadTemplate('settings') : null;\n    if (settingsTemplate) {\n      data = deepMergeSettings(data, settingsTemplate);\n      settings = true;\n    }\n\n    writeJsonFile(targetPath, data);\n\n    return {\n      hooks,\n      mcp,\n      skills: this.installSkills(),\n      settings,\n      instructions: this.installInstructions(),\n    };\n  }\n\n  /** Remove all Myco registration from this symbiont's project files. */\n  uninstall(): InstallResult {\n    const reg = this.manifest.registration;\n    const result = this.shouldBatchJsonTargets(reg)\n      ? this.uninstallBatchedJson(reg!)\n      : {\n          hooks: this.uninstallHooks(),\n          mcp: this.uninstallMcp(),\n          skills: this.uninstallSkills(),\n          settings: this.uninstallSettings(),\n          instructions: this.uninstallInstructions(),\n        };\n    // Remove hook guard after hooks/settings so the file is cleaned up last\n    this.uninstallHookGuard();\n    this.cleanGitignore();\n    return result;\n  }\n\n  /**\n   * Batched uninstall for agents where hooks, MCP, and settings share one JSON file.\n   */\n  private uninstallBatchedJson(reg: NonNullable<typeof this.manifest.registration>): InstallResult {\n    const targetPath = path.join(this.projectRoot, reg.hooksTarget ?? reg.mcpTarget ?? reg.settingsTarget!);\n    const data = readJsonFile(targetPath);\n    if (Object.keys(data).length === 0) {\n      return { hooks: false, mcp: false, skills: this.uninstallSkills(), settings: false, instructions: this.uninstallInstructions() };\n    }\n\n    let hooks = false, mcp = false, settings = false;\n\n    // Remove hooks\n    if (reg.hooksTarget) {\n      const existingHooks = (data.hooks ?? {}) as Record<string, unknown[]>;\n      if (Object.keys(existingHooks).length > 0) {\n        const cleaned: Record<string, unknown[]> = {};\n        for (const [event, groups] of Object.entries(existingHooks)) {\n          const nonMyco = (groups as Array<Record<string, unknown>>).filter((g) => !isMycoHookGroup(g));\n          if (nonMyco.length > 0) cleaned[event] = nonMyco;\n        }\n        if (Object.keys(cleaned).length === 0) {\n          delete data.hooks;\n        } else {\n          data.hooks = cleaned;\n        }\n        hooks = true;\n      }\n    }\n\n    // Remove MCP\n    if (reg.mcpTarget) {\n      const servers = (data.mcpServers ?? {}) as Record<string, unknown>;\n      if (servers[MYCO_MCP_SERVER_NAME]) {\n        delete servers[MYCO_MCP_SERVER_NAME];\n        if (Object.keys(servers).length === 0) delete data.mcpServers;\n        else data.mcpServers = servers;\n        mcp = true;\n      }\n    }\n\n    // Remove settings\n    const settingsTemplate = reg.settingsTarget ? this.loadTemplate('settings') : null;\n    if (settingsTemplate) {\n      settings = deepRemoveSettings(data, settingsTemplate);\n    }\n\n    writeOrDeleteJsonFile(targetPath, data);\n\n    return { hooks, mcp, skills: this.uninstallSkills(), settings, instructions: this.uninstallInstructions() };\n  }\n\n  /**\n   * Ensure the instruction file references AGENTS.md.\n   * - File doesn't exist: write the full stub template.\n   * - File exists without reference: prepend a reference block.\n   * - File already has reference: skip (idempotent).\n   *\n   * Also ensures AGENTS.md exists — creates a starter if missing.\n   */\n  installInstructions(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.instructionsFile) return false;\n\n    // Ensure AGENTS.md exists before creating stubs that reference it\n    ensureAgentsMd(this.projectRoot, this.packageRoot);\n\n    const targetPath = path.join(this.projectRoot, reg.instructionsFile);\n\n    // Check if file already exists\n    let existing: string | null = null;\n    try { existing = fs.readFileSync(targetPath, 'utf-8'); } catch { /* doesn't exist */ }\n\n    if (existing !== null) {\n      // File exists — check if it already has our reference\n      if (existing.includes(INSTRUCTIONS_REF_START) || existing.includes(INSTRUCTIONS_STUB_MARKER)) {\n        return false; // Already has reference — idempotent\n      }\n      // Prepend reference block to existing content\n      fs.writeFileSync(targetPath, INSTRUCTIONS_REF_BLOCK + existing, 'utf-8');\n      return true;\n    }\n\n    // File doesn't exist — write the full stub template\n    const templateCandidates = [\n      path.join(this.packageRoot, 'src/symbionts/templates/instructions-stub.md'),\n      path.join(this.packageRoot, 'dist/src/symbionts/templates/instructions-stub.md'),\n    ];\n    let stub: string | null = null;\n    for (const p of templateCandidates) {\n      try { stub = fs.readFileSync(p, 'utf-8'); break; } catch { /* try next */ }\n    }\n    if (!stub) return false;\n\n    stub = stub.replace('{agentDisplayName}', this.manifest.displayName);\n    fs.mkdirSync(path.dirname(targetPath), { recursive: true });\n    fs.writeFileSync(targetPath, stub, 'utf-8');\n    return true;\n  }\n\n  /**\n   * Remove Myco's instruction file reference.\n   * - If file is the full stub (only Myco content): delete it.\n   * - If file has user content + prepended reference: remove just the reference block.\n   */\n  uninstallInstructions(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.instructionsFile) return false;\n\n    const targetPath = path.join(this.projectRoot, reg.instructionsFile);\n    let content: string;\n    try { content = fs.readFileSync(targetPath, 'utf-8'); } catch { return false; }\n\n    // Case 1: Full stub — delete the file entirely\n    if (content.includes(INSTRUCTIONS_STUB_MARKER)) {\n      fs.unlinkSync(targetPath);\n      return true;\n    }\n\n    // Case 2: Prepended reference block — remove just the block\n    if (content.includes(INSTRUCTIONS_REF_START)) {\n      const startIdx = content.indexOf(INSTRUCTIONS_REF_START);\n      const endIdx = content.indexOf(INSTRUCTIONS_REF_END);\n      if (endIdx > startIdx) {\n        // Remove from start marker through end marker + trailing whitespace\n        const afterEnd = endIdx + INSTRUCTIONS_REF_END.length;\n        const cleaned = (content.slice(0, startIdx) + content.slice(afterEnd)).replace(/^\\n+/, '');\n        fs.writeFileSync(targetPath, cleaned, 'utf-8');\n        return true;\n      }\n    }\n\n    return false;\n  }\n\n  /** List skill directory names from the package root. Returns empty array if not found. */\n  private listSkillDirs(): string[] {\n    try {\n      return fs.readdirSync(path.join(this.packageRoot, SKILLS_SUBDIR), { withFileTypes: true })\n        .filter((d) => d.isDirectory())\n        .map((d) => d.name);\n    } catch { return []; }\n  }\n\n  /**\n   * Reconcile Myco-owned skill entries in project .gitignore.\n   * Computes the desired entry set, strips any existing Myco block\n   * (and legacy entries), then writes the current block if changed.\n   */\n  private updateGitignore(): void {\n    const reg = this.manifest.registration;\n    if (!reg?.skillsTarget) return;\n\n    const skillNames = this.listSkillDirs();\n\n    // Desired state: per-skill entries + infrastructure artifacts\n    const desired = [\n      ...skillNames.map((name) => `${CANONICAL_SKILLS_DIR}/${name}`),\n      ...(reg.skillsTarget !== CANONICAL_SKILLS_DIR\n        ? skillNames.map((name) => `${reg.skillsTarget}/${name}`)\n        : []\n      ),\n      WRANGLER_CACHE_DIR,\n    ];\n\n    const gitignorePath = path.join(this.projectRoot, '.gitignore');\n    let content = '';\n    try { content = fs.readFileSync(gitignorePath, 'utf-8'); } catch { /* doesn't exist yet */ }\n\n    // Strip existing Myco block and any legacy entries\n    const stripped = this.stripMycoGitignoreBlock(content, skillNames);\n\n    // Build the new block\n    const desiredBlock = desired.length > 0\n      ? `${GITIGNORE_COMMENT}\\n${desired.join('\\n')}\\n`\n      : '';\n\n    // Check if anything changed\n    if (stripped === content && desiredBlock === '') return;\n    const separator = stripped.length > 0 && !stripped.endsWith('\\n') ? '\\n' : '';\n    const spacer = stripped.length > 0 && desiredBlock.length > 0 ? '\\n' : '';\n    const result = stripped + separator + spacer + desiredBlock;\n    if (result === content) return;\n\n    fs.writeFileSync(gitignorePath, result, 'utf-8');\n  }\n\n  /**\n   * Remove all Myco-owned gitignore entries: the comment header, per-skill\n   * entries for both canonical and agent-specific paths, and legacy blanket\n   * directory entries. Returns the cleaned content.\n   */\n  private stripMycoGitignoreBlock(content: string, skillNames: string[]): string {\n    const reg = this.manifest.registration;\n    const ownedLines = new Set<string>([\n      GITIGNORE_COMMENT,\n      GITIGNORE_SKILLS_COMMENT_LEGACY,\n      `${CANONICAL_SKILLS_DIR}/`, // legacy blanket entry\n      WRANGLER_CACHE_DIR,\n    ]);\n    for (const name of skillNames) {\n      ownedLines.add(`${CANONICAL_SKILLS_DIR}/${name}`);\n      if (reg?.skillsTarget && reg.skillsTarget !== CANONICAL_SKILLS_DIR) {\n        ownedLines.add(`${reg.skillsTarget}/${name}`);\n      }\n    }\n\n    const lines = content.split('\\n');\n    const filtered = lines.filter((line) => !ownedLines.has(line));\n    return filtered.join('\\n').replace(/\\n{3,}/g, '\\n\\n').trimEnd() + (filtered.length > 0 ? '\\n' : '');\n  }\n\n  /**\n   * Merge hooks template into the target settings file.\n   * Replaces all Myco-owned hook groups; preserves non-Myco hooks.\n   */\n  installHooks(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.hooksTarget) return false;\n\n    const template = this.loadTemplate('hooks');\n    if (!template) return false;\n\n    const targetPath = path.join(this.projectRoot, reg.hooksTarget);\n    const settings = readJsonFile(targetPath);\n    const existingHooks = (settings.hooks ?? {}) as Record<string, unknown[]>;\n\n    // Build merged hooks: for each event, keep non-Myco groups + add template groups\n    const mergedHooks: Record<string, unknown[]> = {};\n\n    // Preserve non-Myco hooks from existing config\n    for (const [event, groups] of Object.entries(existingHooks)) {\n      const nonMycoGroups = (groups as Array<Record<string, unknown>>).filter(\n        (group) => !isMycoHookGroup(group),\n      );\n      if (nonMycoGroups.length > 0) {\n        mergedHooks[event] = nonMycoGroups;\n      }\n    }\n\n    // Add template hooks\n    for (const [event, groups] of Object.entries(template)) {\n      mergedHooks[event] = [...(mergedHooks[event] ?? []), ...(groups as unknown[])];\n    }\n\n    settings.hooks = mergedHooks;\n    writeJsonFile(targetPath, settings);\n    return true;\n  }\n\n  /**\n   * Merge MCP server template into the target config file.\n   * Replaces the `myco` server entry; preserves other servers.\n   */\n  installMcp(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.mcpTarget) return false;\n\n    const template = this.loadTemplate('mcp');\n    if (!template) return false;\n\n    const targetPath = path.join(this.projectRoot, reg.mcpTarget);\n    const mcpFormat = reg.mcpFormat ?? 'json';\n\n    if (mcpFormat === 'toml') {\n      return this.installMcpToml(targetPath, template);\n    }\n    return this.installMcpJson(targetPath, template);\n  }\n\n  /** Write MCP servers to a JSON config file. */\n  private installMcpJson(targetPath: string, template: Record<string, unknown>): boolean {\n    const config = readJsonFile(targetPath);\n    const servers = (config.mcpServers ?? {}) as Record<string, unknown>;\n\n    for (const [name, def] of Object.entries(template)) {\n      servers[name] = def;\n    }\n\n    config.mcpServers = servers;\n    writeJsonFile(targetPath, config);\n    return true;\n  }\n\n  /** Write MCP servers to a TOML config file. */\n  private installMcpToml(targetPath: string, template: Record<string, unknown>): boolean {\n    let raw = '';\n    try { raw = fs.readFileSync(targetPath, 'utf-8'); } catch { /* doesn't exist */ }\n\n    for (const [name, def] of Object.entries(template)) {\n      raw = buildTomlMcpSection(raw, name, def as Record<string, unknown>);\n    }\n\n    fs.mkdirSync(path.dirname(targetPath), { recursive: true });\n    fs.writeFileSync(targetPath, raw, 'utf-8');\n    return true;\n  }\n\n  /**\n   * Create symlinks for skills through .agents/skills/ canonical layer.\n   * Canonical: .agents/skills/<name> -> <packageRoot>/skills/<name>\n   * Agent-specific: <skillsTarget>/<name> -> ../../.agents/skills/<name>\n   */\n  installSkills(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.skillsTarget) return false;\n\n    const skillNames = this.listSkillDirs();\n    if (skillNames.length === 0) return false;\n\n    const skillsSrc = path.join(this.packageRoot, SKILLS_SUBDIR);\n\n    // Create canonical symlinks: .agents/skills/<name> -> package skills\n    const canonicalDir = path.join(this.projectRoot, CANONICAL_SKILLS_DIR);\n    fs.mkdirSync(canonicalDir, { recursive: true });\n\n    for (const name of skillNames) {\n      const canonicalLink = path.join(canonicalDir, name);\n      const target = path.join(skillsSrc, name);\n      ensureSymlink(canonicalLink, target);\n    }\n\n    // Create agent-specific symlinks if skillsTarget differs from canonical\n    const agentSkillsDir = path.join(this.projectRoot, reg.skillsTarget);\n    const canonicalRel = path.relative(agentSkillsDir, canonicalDir);\n\n    if (reg.skillsTarget !== CANONICAL_SKILLS_DIR) {\n      fs.mkdirSync(agentSkillsDir, { recursive: true });\n      for (const name of skillNames) {\n        const agentLink = path.join(agentSkillsDir, name);\n        const relTarget = path.join(canonicalRel, name);\n        ensureSymlink(agentLink, relTarget);\n      }\n    }\n\n    return true;\n  }\n\n  /**\n   * Merge settings template into the target settings file.\n   * Deep merges objects and deduplicates arrays.\n   */\n  installSettings(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.settingsTarget) return false;\n\n    const template = this.loadTemplate('settings');\n    if (!template) return false;\n\n    const targetPath = path.join(this.projectRoot, reg.settingsTarget);\n    const existing = readJsonFile(targetPath);\n    const merged = deepMergeSettings(existing, template);\n    writeJsonFile(targetPath, merged);\n    return true;\n  }\n\n  /**\n   * Remove Myco entries from the target settings file.\n   * Template-driven: loads the settings template and removes matching values.\n   * Arrays: filter out values present in the template.\n   * Objects: delete keys present in the template.\n   */\n  uninstallSettings(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.settingsTarget) return false;\n\n    const template = this.loadTemplate('settings');\n    if (!template) return false;\n\n    const targetPath = path.join(this.projectRoot, reg.settingsTarget);\n    const settings = readJsonFile(targetPath);\n    if (Object.keys(settings).length === 0) return false;\n\n    const changed = deepRemoveSettings(settings, template);\n    if (!changed) return false;\n\n    writeOrDeleteJsonFile(targetPath, settings);\n    return true;\n  }\n\n  /** Remove Myco hook groups from the target settings file. */\n  uninstallHooks(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.hooksTarget) return false;\n\n    const targetPath = path.join(this.projectRoot, reg.hooksTarget);\n    const settings = readJsonFile(targetPath);\n    const existingHooks = (settings.hooks ?? {}) as Record<string, unknown[]>;\n    if (Object.keys(existingHooks).length === 0) return false;\n\n    const cleaned: Record<string, unknown[]> = {};\n    for (const [event, groups] of Object.entries(existingHooks)) {\n      const nonMyco = (groups as Array<Record<string, unknown>>).filter(\n        (group) => !isMycoHookGroup(group),\n      );\n      if (nonMyco.length > 0) {\n        cleaned[event] = nonMyco;\n      }\n    }\n\n    if (Object.keys(cleaned).length === 0) {\n      delete settings.hooks;\n    } else {\n      settings.hooks = cleaned;\n    }\n\n    writeOrDeleteJsonFile(targetPath, settings);\n    return true;\n  }\n\n  /** Remove Myco MCP server entry from the target config file. */\n  uninstallMcp(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.mcpTarget) return false;\n\n    const targetPath = path.join(this.projectRoot, reg.mcpTarget);\n    const mcpFormat = reg.mcpFormat ?? 'json';\n\n    if (mcpFormat === 'toml') {\n      return this.uninstallMcpToml(targetPath);\n    }\n    return this.uninstallMcpJson(targetPath);\n  }\n\n  private uninstallMcpJson(targetPath: string): boolean {\n    const config = readJsonFile(targetPath);\n    const servers = (config.mcpServers ?? {}) as Record<string, unknown>;\n    if (!servers[MYCO_MCP_SERVER_NAME]) return false;\n\n    delete servers[MYCO_MCP_SERVER_NAME];\n\n    if (Object.keys(servers).length === 0) {\n      delete config.mcpServers;\n    } else {\n      config.mcpServers = servers;\n    }\n\n    writeOrDeleteJsonFile(targetPath, config);\n    return true;\n  }\n\n  private uninstallMcpToml(targetPath: string): boolean {\n    let raw = '';\n    try { raw = fs.readFileSync(targetPath, 'utf-8'); } catch { return false; }\n\n    const sectionHeader = `[mcp_servers.${MYCO_MCP_SERVER_NAME}]`;\n    if (!raw.includes(sectionHeader)) return false;\n\n    const startIdx = raw.indexOf(sectionHeader);\n    const endIdx = findTomlSectionEnd(raw, startIdx + sectionHeader.length, MYCO_MCP_SERVER_NAME);\n    const before = raw.slice(0, startIdx).trimEnd();\n    const after = raw.slice(endIdx).trimStart();\n    const updated = (before + (before && after ? '\\n\\n' : '') + after).trimEnd();\n\n    if (!updated.trim()) {\n      try { fs.unlinkSync(targetPath); } catch { /* ignore */ }\n    } else {\n      fs.writeFileSync(targetPath, updated + '\\n', 'utf-8');\n    }\n    return true;\n  }\n\n  /** Remove skill symlinks (canonical + agent-specific). */\n  uninstallSkills(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.skillsTarget) return false;\n\n    const skillNames = this.listSkillDirs();\n    if (skillNames.length === 0) return false;\n\n    let removed = false;\n\n    // Remove agent-specific symlinks\n    if (reg.skillsTarget !== CANONICAL_SKILLS_DIR) {\n      for (const name of skillNames) {\n        const link = path.join(this.projectRoot, reg.skillsTarget, name);\n        try { fs.unlinkSync(link); removed = true; } catch { /* doesn't exist */ }\n      }\n      // Remove agent skills dir if now empty (rmdirSync fails atomically if non-empty)\n      try { fs.rmdirSync(path.join(this.projectRoot, reg.skillsTarget)); } catch { /* not empty or missing */ }\n    }\n\n    // Remove canonical symlinks\n    const canonicalDir = path.join(this.projectRoot, CANONICAL_SKILLS_DIR);\n    for (const name of skillNames) {\n      const link = path.join(canonicalDir, name);\n      try { fs.unlinkSync(link); removed = true; } catch { /* doesn't exist */ }\n    }\n    // Remove empty dirs (rmdirSync fails atomically if non-empty)\n    try { fs.rmdirSync(canonicalDir); } catch { /* not empty or missing */ }\n    try { fs.rmdirSync(path.join(this.projectRoot, '.agents')); } catch { /* not empty or missing */ }\n\n    return removed;\n  }\n\n  /** Remove Myco entries from project .gitignore. */\n  private cleanGitignore(): void {\n    const gitignorePath = path.join(this.projectRoot, '.gitignore');\n    let content = '';\n    try { content = fs.readFileSync(gitignorePath, 'utf-8'); } catch { return; }\n\n    const cleaned = this.stripMycoGitignoreBlock(content, this.listSkillDirs()).trim();\n    if (cleaned) {\n      fs.writeFileSync(gitignorePath, cleaned + '\\n', 'utf-8');\n    } else {\n      try { fs.unlinkSync(gitignorePath); } catch { /* ignore */ }\n    }\n  }\n}\n\n// --- TOML helpers ---\n\n/** TOML section header pattern. */\nconst TOML_SECTION_RE = /^\\[([^\\]]+)\\]/;\n\n/** Find where a [mcp_servers.<name>] section ends in a TOML string. */\nfunction findTomlSectionEnd(raw: string, searchStart: number, serverName: string): number {\n  const subsectionPrefix = `mcp_servers.${serverName}.`;\n  const rawLines = raw.slice(searchStart).split('\\n');\n  let offset = searchStart;\n  for (const line of rawLines) {\n    offset += line.length + 1;\n    const m = line.match(TOML_SECTION_RE);\n    if (m && !m[1].startsWith(subsectionPrefix) && m[1] !== `mcp_servers.${serverName}`) {\n      return offset - line.length - 1;\n    }\n  }\n  return raw.length;\n}\n\n/**\n * Build/update a specific mcp_servers entry in a TOML string.\n * Pure transformation — returns updated content without writing to disk.\n */\nfunction buildTomlMcpSection(\n  raw: string,\n  serverName: string,\n  server: Record<string, unknown>,\n): string {\n  const sectionHeader = `[mcp_servers.${serverName}]`;\n\n  // Build the TOML block for this server\n  const lines: string[] = [sectionHeader];\n  for (const [key, val] of Object.entries(server)) {\n    if (key === 'env' && typeof val === 'object' && val !== null) continue; // Handle env as subtable\n    if (typeof val === 'string') {\n      lines.push(`${key} = \"${val}\"`);\n    } else if (Array.isArray(val)) {\n      lines.push(`${key} = [${val.map((v: unknown) => `\"${v}\"`).join(', ')}]`);\n    } else if (typeof val === 'boolean') {\n      lines.push(`${key} = ${val}`);\n    }\n  }\n\n  // Add env subtable if present\n  const env = server.env as Record<string, string> | undefined;\n  if (env && Object.keys(env).length > 0) {\n    lines.push('');\n    lines.push(`[mcp_servers.${serverName}.env]`);\n    for (const [key, val] of Object.entries(env)) {\n      lines.push(`${key} = \"${val}\"`);\n    }\n  }\n\n  const block = lines.join('\\n');\n\n  let updated: string;\n  if (raw.includes(sectionHeader)) {\n    const startIdx = raw.indexOf(sectionHeader);\n    const endIdx = findTomlSectionEnd(raw, startIdx + sectionHeader.length, serverName);\n    const before = raw.slice(0, startIdx).trimEnd();\n    const after = raw.slice(endIdx);\n    const separator = before ? '\\n\\n' : '';\n    updated = (before + separator + block + after).trimEnd() + '\\n';\n  } else {\n    // Append new section\n    const separator = raw.trim() ? '\\n\\n' : '';\n    updated = (raw.trimEnd() + separator + block).trimEnd() + '\\n';\n  }\n\n  return updated;\n}\n\n// --- Settings merge helpers ---\n\n/** Deep merge two settings objects. 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package/dist/cli-HEPHQSLV.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/cli.ts"],"sourcesContent":["#!/usr/bin/env node\nimport { loadEnv } from './cli/shared.js';\nimport { resolveVaultDir } from './vault/resolve.js';\nimport fs from 'node:fs';\nimport path from 'node:path';\n\nloadEnv();\n\nconst USAGE = `Usage: myco <command> [args]\n\nCommands:\n  init [options]           Initialize a new vault\n  update                   Update vault files and agent registration\n  remove [--remove-vault]  Remove Myco from this project (vault preserved by default)\n  config <get|set> [args]  Get or set vault config values\n  detect-providers         Detect available LLM/embedding providers (JSON)\n  verify                   Test LLM and embedding connectivity\n  stats                    Vault health, index counts, vector count\n  search <query>           Combined FTS + vector search with scores\n  vectors <query>          Raw vector search with similarity scores\n  session [id|latest]      Show a session\n  logs [options]           View daemon logs\n  setup-llm [options]      Configure LLM and embedding providers\n  setup-digest [options]   Configure digest and capture settings\n  agent [options]          Run the intelligence agent\n  task <subcommand>        Manage agent task definitions\n  team <init|upgrade>      Provision or upgrade team sync infrastructure\n  doctor [--fix]          Check vault health and repair issues\n  open                     Open the dashboard in your browser\n  restart                  Restart the daemon\n  version                  Show plugin version\n  mcp                     Start the MCP stdio server\n  hook <name>             Run a hook (session-start, session-end, stop, user-prompt-submit, post-tool-use, post-tool-use-failure, subagent-start, subagent-stop, stop-failure, task-completed, pre-compact, post-compact)\n  daemon --vault <dir>    Start the daemon process\n`;\n\nasync function main(): Promise<void> {\n  const [cmd, ...args] = process.argv.slice(2);\n  if (!cmd || cmd === '--help' || cmd === '-h') {\n    process.stdout.write(USAGE);\n    return;\n  }\n\n  if (cmd === 'init') return (await import('./cli/init.js')).run(args);\n  if (cmd === 'detect-providers') return (await import('./cli/detect-providers.js')).run(args);\n  if (cmd === 'version' || cmd === '--version' || cmd === '-v') {\n    const { getPluginVersion } = await import('./version.js');\n    console.log(getPluginVersion());\n    return;\n  }\n  if (cmd === 'mcp') return (await import('./mcp/server.js')).main();\n  if (cmd === 'hook') {\n    const hookName = args[0];\n    const HOOK_DISPATCH: Record<string, () => Promise<{ main: () => Promise<void> }>> = {\n      'session-start': () => import('./hooks/session-start.js'),\n      'session-end': () => import('./hooks/session-end.js'),\n      'stop': () => import('./hooks/stop.js'),\n      'user-prompt-submit': () => import('./hooks/user-prompt-submit.js'),\n      'post-tool-use': () => import('./hooks/post-tool-use.js'),\n      'post-tool-use-failure': () => import('./hooks/post-tool-use-failure.js'),\n      'subagent-start': () => import('./hooks/subagent-start.js'),\n      'subagent-stop': () => import('./hooks/subagent-stop.js'),\n      'stop-failure': () => import('./hooks/stop-failure.js'),\n      'task-completed': () => import('./hooks/task-completed.js'),\n      'pre-compact': () => import('./hooks/pre-compact.js'),\n      'post-compact': () => import('./hooks/post-compact.js'),\n    };\n    const loader = HOOK_DISPATCH[hookName];\n    if (!loader) {\n      console.error(`Unknown hook: ${hookName}. Available: ${Object.keys(HOOK_DISPATCH).join(', ')}`);\n      process.exit(1);\n    }\n    return (await loader()).main();\n  }\n  if (cmd === 'daemon') return (await import('./daemon/main.js')).main();\n\n  if (cmd === 'doctor') {\n    const vaultDir = resolveVaultDir();\n    return (await import('./cli/doctor.js')).run(args, vaultDir);\n  }\n\n  if (cmd === 'update') return (await import('./cli/update.js')).run(args);\n  if (cmd === 'remove') return (await import('./cli/remove.js')).run(args);\n\n  const vaultDir = resolveVaultDir();\n  if (!fs.existsSync(path.join(vaultDir, 'myco.yaml'))) {\n    console.error(`No myco.yaml found in ${vaultDir}. Run 'myco init' first.`);\n    process.exit(1);\n  }\n\n  switch (cmd) {\n    case 'config': return (await import('./cli/config.js')).run(args, vaultDir);\n    case 'verify': return (await import('./cli/verify.js')).run(args, vaultDir);\n    case 'stats': return (await import('./cli/stats.js')).run(args, vaultDir);\n    case 'search': return (await import('./cli/search.js')).run(args, vaultDir);\n    case 'vectors': return (await import('./cli/search.js')).runVectors(args, vaultDir);\n    case 'session': return (await import('./cli/session.js')).run(args, vaultDir);\n    case 'setup-llm': return (await import('./cli/setup-llm.js')).run(args, vaultDir);\n    case 'setup-digest': return (await import('./cli/setup-digest.js')).run(args, vaultDir);\n    case 'agent': return (await import('./cli/agent-run.js')).run(args, vaultDir);\n    case 'task': return (await import('./cli/agent-tasks.js')).run(args, vaultDir);\n    case 'team': {\n      const sub = args[0];\n      if (sub === 'init') return (await import('./cli/team.js')).teamInit(vaultDir);\n      if (sub === 'upgrade') return (await import('./cli/team.js')).teamUpgrade(vaultDir);\n      console.error('Usage: myco team <init|upgrade>');\n      process.exit(1);\n      break;\n    }\n    case 'open': return (await import('./cli/open.js')).run(args, vaultDir);\n    case 'restart': return (await import('./cli/restart.js')).run(args, vaultDir);\n    case 'logs': return (await import('./cli/logs.js')).run(args, vaultDir);\n    default:\n      console.error(`Unknown command: ${cmd}`);\n      process.stdout.write(USAGE);\n      process.exit(1);\n  }\n}\n\nmain().catch((err) => {\n  console.error(`myco: ${(err as Error).message}`);\n  process.exit(1);\n});\n"],"mappings":";;;;;;;;;;;;;;;;;;;;AAGA,OAAO,QAAQ;AACf,OAAO,UAAU;AAEjB,QAAQ;AAER,IAAM,QAAQ;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AA4Bd,eAAe,OAAsB;AACnC,QAAM,CAAC,KAAK,GAAG,IAAI,IAAI,QAAQ,KAAK,MAAM,CAAC;AAC3C,MAAI,CAAC,OAAO,QAAQ,YAAY,QAAQ,MAAM;AAC5C,YAAQ,OAAO,MAAM,KAAK;AAC1B;AAAA,EACF;AAEA,MAAI,QAAQ,OAAQ,SAAQ,MAAM,OAAO,oBAAe,GAAG,IAAI,IAAI;AACnE,MAAI,QAAQ,mBAAoB,SAAQ,MAAM,OAAO,gCAA2B,GAAG,IAAI,IAAI;AAC3F,MAAI,QAAQ,aAAa,QAAQ,eAAe,QAAQ,MAAM;AAC5D,UAAM,EAAE,iBAAiB,IAAI,MAAM,OAAO,uBAAc;AACxD,YAAQ,IAAI,iBAAiB,CAAC;AAC9B;AAAA,EACF;AACA,MAAI,QAAQ,MAAO,SAAQ,MAAM,OAAO,sBAAiB,GAAG,KAAK;AACjE,MAAI,QAAQ,QAAQ;AAClB,UAAM,WAAW,KAAK,CAAC;AACvB,UAAM,gBAA8E;AAAA,MAClF,iBAAiB,MAAM,OAAO,6BAA0B;AAAA,MACxD,eAAe,MAAM,OAAO,2BAAwB;AAAA,MACpD,QAAQ,MAAM,OAAO,oBAAiB;AAAA,MACtC,sBAAsB,MAAM,OAAO,kCAA+B;AAAA,MAClE,iBAAiB,MAAM,OAAO,6BAA0B;AAAA,MACxD,yBAAyB,MAAM,OAAO,qCAAkC;AAAA,MACxE,kBAAkB,MAAM,OAAO,8BAA2B;AAAA,MAC1D,iBAAiB,MAAM,OAAO,6BAA0B;AAAA,MACxD,gBAAgB,MAAM,OAAO,4BAAyB;AAAA,MACtD,kBAAkB,MAAM,OAAO,8BAA2B;AAAA,MAC1D,eAAe,MAAM,OAAO,2BAAwB;AAAA,MACpD,gBAAgB,MAAM,OAAO,4BAAyB;AAAA,IACxD;AACA,UAAM,SAAS,cAAc,QAAQ;AACrC,QAAI,CAAC,QAAQ;AACX,cAAQ,MAAM,iBAAiB,QAAQ,gBAAgB,OAAO,KAAK,aAAa,EAAE,KAAK,IAAI,CAAC,EAAE;AAC9F,cAAQ,KAAK,CAAC;AAAA,IAChB;AACA,YAAQ,MAAM,OAAO,GAAG,KAAK;AAAA,EAC/B;AACA,MAAI,QAAQ,SAAU,SAAQ,MAAM,OAAO,oBAAkB,GAAG,KAAK;AAErE,MAAI,QAAQ,UAAU;AACpB,UAAMA,YAAW,gBAAgB;AACjC,YAAQ,MAAM,OAAO,sBAAiB,GAAG,IAAI,MAAMA,SAAQ;AAAA,EAC7D;AAEA,MAAI,QAAQ,SAAU,SAAQ,MAAM,OAAO,sBAAiB,GAAG,IAAI,IAAI;AACvE,MAAI,QAAQ,SAAU,SAAQ,MAAM,OAAO,sBAAiB,GAAG,IAAI,IAAI;AAEvE,QAAM,WAAW,gBAAgB;AACjC,MAAI,CAAC,GAAG,WAAW,KAAK,KAAK,UAAU,WAAW,CAAC,GAAG;AACpD,YAAQ,MAAM,yBAAyB,QAAQ,0BAA0B;AACzE,YAAQ,KAAK,CAAC;AAAA,EAChB;AAEA,UAAQ,KAAK;AAAA,IACX,KAAK;AAAU,cAAQ,MAAM,OAAO,sBAAiB,GAAG,IAAI,MAAM,QAAQ;AAAA,IAC1E,KAAK;AAAU,cAAQ,MAAM,OAAO,sBAAiB,GAAG,IAAI,MAAM,QAAQ;AAAA,IAC1E,KAAK;AAAS,cAAQ,MAAM,OAAO,qBAAgB,GAAG,IAAI,MAAM,QAAQ;AAAA,IACxE,KAAK;AAAU,cAAQ,MAAM,OAAO,sBAAiB,GAAG,IAAI,MAAM,QAAQ;AAAA,IAC1E,KAAK;AAAW,cAAQ,MAAM,OAAO,sBAAiB,GAAG,WAAW,MAAM,QAAQ;AAAA,IAClF,KAAK;AAAW,cAAQ,MAAM,OAAO,uBAAkB,GAAG,IAAI,MAAM,QAAQ;AAAA,IAC5E,KAAK;AAAa,cAAQ,MAAM,OAAO,yBAAoB,GAAG,IAAI,MAAM,QAAQ;AAAA,IAChF,KAAK;AAAgB,cAAQ,MAAM,OAAO,4BAAuB,GAAG,IAAI,MAAM,QAAQ;AAAA,IACtF,KAAK;AAAS,cAAQ,MAAM,OAAO,yBAAoB,GAAG,IAAI,MAAM,QAAQ;AAAA,IAC5E,KAAK;AAAQ,cAAQ,MAAM,OAAO,2BAAsB,GAAG,IAAI,MAAM,QAAQ;AAAA,IAC7E,KAAK,QAAQ;AACX,YAAM,MAAM,KAAK,CAAC;AAClB,UAAI,QAAQ,OAAQ,SAAQ,MAAM,OAAO,oBAAe,GAAG,SAAS,QAAQ;AAC5E,UAAI,QAAQ,UAAW,SAAQ,MAAM,OAAO,oBAAe,GAAG,YAAY,QAAQ;AAClF,cAAQ,MAAM,iCAAiC;AAC/C,cAAQ,KAAK,CAAC;AACd;AAAA,IACF;AAAA,IACA,KAAK;AAAQ,cAAQ,MAAM,OAAO,oBAAe,GAAG,IAAI,MAAM,QAAQ;AAAA,IACtE,KAAK;AAAW,cAAQ,MAAM,OAAO,uBAAkB,GAAG,IAAI,MAAM,QAAQ;AAAA,IAC5E,KAAK;AAAQ,cAAQ,MAAM,OAAO,oBAAe,GAAG,IAAI,MAAM,QAAQ;AAAA,IACtE;AACE,cAAQ,MAAM,oBAAoB,GAAG,EAAE;AACvC,cAAQ,OAAO,MAAM,KAAK;AAC1B,cAAQ,KAAK,CAAC;AAAA,EAClB;AACF;AAEA,KAAK,EAAE,MAAM,CAAC,QAAQ;AACpB,UAAQ,MAAM,SAAU,IAAc,OAAO,EAAE;AAC/C,UAAQ,KAAK,CAAC;AAChB,CAAC;","names":["vaultDir"]}

package/dist/doctor-Q5WJBNSZ.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/cli/doctor.ts"],"sourcesContent":["/**\n * CLI: myco doctor — check vault health and auto-repair fixable issues.\n *\n * Runs a series of health checks against the vault directory and reports\n * status. With --fix, attempts to repair issues it can handle automatically.\n */\n\nimport fs from 'node:fs';\nimport path from 'node:path';\nimport { isProcessAlive } from './shared.js';\nimport { MYCO_MCP_SERVER_NAME } from '../symbionts/installer.js';\n\n// --- Named constants (no magic literals) ---\n\n\n/** Filename of the vault config file. */\nconst CONFIG_FILENAME = 'myco.yaml';\n\n/** Filename of the daemon state file. */\nconst DAEMON_STATE_FILENAME = 'daemon.json';\n\n/** Filename of the SQLite database. */\nconst DB_FILENAME = 'myco.db';\n\n/** Column width for the check name in output. */\nconst NAME_COL_WIDTH = 17;\n\n/** Prefix for indented continuation lines (e.g. multi-line agent output). */\nconst CONTINUATION_INDENT = ' '.repeat(NAME_COL_WIDTH);\n\n// --- Types ---\n\nexport interface DoctorCheck {\n  name: string;\n  status: 'ok' | 'fail' | 'warn';\n  detail: string;\n  fixable: boolean;\n}\n\n// --- Checks ---\n\n/** Check that myco.yaml exists and parses. Returns the parsed config on success. */\nasync function checkVault(vaultDir: string): Promise<{ check: DoctorCheck; config: import('../config/schema.js').MycoConfig | null }> {\n  const configPath = path.join(vaultDir, CONFIG_FILENAME);\n  if (!fs.existsSync(configPath)) {\n    return { check: { name: 'Vault', status: 'fail', detail: `${CONFIG_FILENAME} not found in ${vaultDir}`, fixable: false }, config: null };\n  }\n  try {\n    const { loadConfig } = await import('../config/loader.js');\n    const config = loadConfig(vaultDir);\n    return { check: { name: 'Vault', status: 'ok', detail: `.myco/ (v${config.version})`, fixable: false }, config };\n  } catch (err) {\n    return { check: { name: 'Vault', status: 'fail', detail: `${CONFIG_FILENAME} parse error: ${(err as Error).message}`, fixable: false }, config: null };\n  }\n}\n\n/** Check that the SQLite database exists and can be queried. */\nasync function checkDatabase(vaultDir: string): Promise<DoctorCheck> {\n  const dbPath = path.join(vaultDir, DB_FILENAME);\n  if (!fs.existsSync(dbPath)) {\n    return { name: 'Database', status: 'fail', detail: `${DB_FILENAME} not found — run \\`myco init\\``, fixable: false };\n  }\n  try {\n    const { initDatabase, closeDatabase, vaultDbPath } = await import('../db/client.js');\n    const db = initDatabase(vaultDbPath(vaultDir));\n    const row = db.prepare('SELECT count(*) AS cnt FROM sessions').get() as { cnt: number } | undefined;\n    const count = row?.cnt ?? 0;\n    closeDatabase();\n    return { name: 'Database', status: 'ok', detail: `${DB_FILENAME} (${count.toLocaleString()} sessions)`, fixable: false };\n  } catch (err) {\n    // Ensure DB is closed even on error\n    try { const { closeDatabase } = await import('../db/client.js'); closeDatabase(); } catch { /* ignore */ }\n    return { name: 'Database', status: 'fail', detail: `Database error: ${(err as Error).message}`, fixable: false };\n  }\n}\n\n/** Check that the intelligence (agent) provider is configured. */\nasync function checkIntelligence(config: import('../config/schema.js').MycoConfig): Promise<DoctorCheck> {\n  try {\n    const provider = config.agent.provider;\n\n    if (!provider) {\n      return { name: 'Intelligence', status: 'warn', detail: 'No agent provider configured — run `myco init` to set up', fixable: false };\n    }\n\n    const label = `${provider.type}${provider.model ? ` / ${provider.model}` : ''}`;\n\n    if (provider.type === 'cloud') {\n      return { name: 'Intelligence', status: 'ok', detail: `${label} (SDK handles auth)`, fixable: false };\n    }\n\n    // Local provider — check reachability\n    if (provider.type === 'ollama' || provider.type === 'lmstudio') {\n      const { checkLocalProvider } = await import('../intelligence/provider-check.js');\n      const status = await checkLocalProvider(provider.type, provider.base_url);\n      if (!status.available) {\n        return { name: 'Intelligence', status: 'warn', detail: `${label} (not reachable)`, fixable: false };\n      }\n      return { name: 'Intelligence', status: 'ok', detail: label, fixable: false };\n    }\n\n    return { name: 'Intelligence', status: 'ok', detail: label, fixable: false };\n  } catch (err) {\n    return { name: 'Intelligence', status: 'fail', detail: `Intelligence check failed: ${(err as Error).message}`, fixable: false };\n  }\n}\n\n/** Check that the embedding provider is configured and reachable. */\nasync function checkEmbeddings(config: import('../config/schema.js').MycoConfig): Promise<DoctorCheck> {\n  try {\n    const { createEmbeddingProvider } = await import('../intelligence/llm.js');\n    const provider = createEmbeddingProvider(config.embedding);\n    const available = await provider.isAvailable();\n    const label = `${config.embedding.provider} / ${config.embedding.model}`;\n    if (available) {\n      return { name: 'Embeddings', status: 'ok', detail: label, fixable: false };\n    }\n    return { name: 'Embeddings', status: 'warn', detail: `${label} (not reachable)`, fixable: false };\n  } catch (err) {\n    return { name: 'Embeddings', status: 'fail', detail: `Embedding check failed: ${(err as Error).message}`, fixable: false };\n  }\n}\n\n/** Check symbiont detection and registration status. */\nasync function checkAgents(vaultDir: string): Promise<DoctorCheck[]> {\n  try {\n    const { detectSymbionts } = await import('../symbionts/detect.js');\n    const { resolveVaultDir } = await import('../vault/resolve.js');\n    const projectRoot = path.dirname(resolveVaultDir());\n    const detected = detectSymbionts(projectRoot);\n\n    if (detected.length === 0) {\n      return [{ name: 'Agents', status: 'warn', detail: 'No symbionts detected', fixable: false }];\n    }\n\n    const checks: DoctorCheck[] = [];\n    for (const d of detected) {\n      const registered = isSymbiontRegistered(d, projectRoot);\n      if (registered) {\n        checks.push({\n          name: checks.length === 0 ? 'Agents' : '',\n          status: 'ok',\n          detail: `${d.manifest.displayName} (registered)`,\n          fixable: false,\n        });\n      } else {\n        checks.push({\n          name: checks.length === 0 ? 'Agents' : '',\n          status: 'warn',\n          detail: `${d.manifest.displayName} (detected but not registered — run \\`myco init\\`)`,\n          fixable: false,\n        });\n      }\n    }\n    return checks;\n  } catch (err) {\n    return [{ name: 'Agents', status: 'fail', detail: `Agent check failed: ${(err as Error).message}`, fixable: false }];\n  }\n}\n\n/** Check if a symbiont has the Myco MCP server registered. */\nfunction isSymbiontRegistered(\n  d: import('../symbionts/detect.js').DetectedSymbiont,\n  projectRoot: string,\n): boolean {\n  try {\n    const mcpTarget = d.manifest.registration?.mcpTarget;\n    if (!mcpTarget) return false;\n\n    const mcpFile = path.join(projectRoot, mcpTarget);\n    const raw = fs.readFileSync(mcpFile, 'utf-8');\n\n    // TOML: check for section header\n    if (mcpTarget.endsWith('.toml')) {\n      return raw.includes(`[mcp_servers.${MYCO_MCP_SERVER_NAME}]`);\n    }\n\n    // JSON: check for server entry\n    const config = JSON.parse(raw) as Record<string, unknown>;\n    const servers = config.mcpServers as Record<string, unknown> | undefined;\n    return !!servers?.[MYCO_MCP_SERVER_NAME];\n  } catch { /* config missing or malformed */ }\n  return false;\n}\n\n/** Check the daemon state file and process liveness. */\nasync function checkDaemon(vaultDir: string): Promise<DoctorCheck> {\n  const daemonFile = path.join(vaultDir, DAEMON_STATE_FILENAME);\n  if (!fs.existsSync(daemonFile)) {\n    return { name: 'Daemon', status: 'warn', detail: 'Not running (no daemon.json)', fixable: false };\n  }\n  try {\n    const state = JSON.parse(fs.readFileSync(daemonFile, 'utf-8')) as { pid?: number; port?: number };\n    if (!state.pid) {\n      return { name: 'Daemon', status: 'warn', detail: 'daemon.json exists but no PID', fixable: true };\n    }\n    if (isProcessAlive(state.pid)) {\n      return { name: 'Daemon', status: 'ok', detail: `PID ${state.pid}, port ${state.port ?? 'unknown'}`, fixable: false };\n    }\n    return { name: 'Daemon', status: 'warn', detail: `Stale daemon.json (PID ${state.pid} not running)`, fixable: true };\n  } catch (err) {\n    return { name: 'Daemon', status: 'fail', detail: `daemon.json parse error: ${(err as Error).message}`, fixable: true };\n  }\n}\n\n\n// --- Public API ---\n\n/** Run all health checks against a vault directory. */\nexport async function runChecks(vaultDir: string): Promise<DoctorCheck[]> {\n  const { check: vaultCheck, config } = await checkVault(vaultDir);\n  const checks: DoctorCheck[] = [vaultCheck];\n\n  if (!config) {\n    checks.push(\n      { name: 'Database', status: 'fail', detail: 'Skipped (vault check failed)', fixable: false },\n      { name: 'Intelligence', status: 'fail', detail: 'Skipped (vault check failed)', fixable: false },\n      { name: 'Embeddings', status: 'fail', detail: 'Skipped (vault check failed)', fixable: false },\n      { name: 'Agents', status: 'fail', detail: 'Skipped (vault check failed)', fixable: false },\n      await checkDaemon(vaultDir),\n    );\n    return checks;\n  }\n\n  checks.push(await checkDatabase(vaultDir));\n  checks.push(await checkIntelligence(config));\n  checks.push(await checkEmbeddings(config));\n  checks.push(...await checkAgents(vaultDir));\n  checks.push(await checkDaemon(vaultDir));\n\n  return checks;\n}\n\n/** Auto-repair fixable issues. Returns descriptions of actions taken. */\nexport async function fix(vaultDir: string, checks: DoctorCheck[]): Promise<string[]> {\n  const actions: string[] = [];\n\n  for (const check of checks) {\n    if (!check.fixable || check.status === 'ok') continue;\n\n    // Fix stale daemon.json\n    if (check.name === 'Daemon' && check.detail.includes('Stale')) {\n      const daemonFile = path.join(vaultDir, DAEMON_STATE_FILENAME);\n      fs.unlinkSync(daemonFile);\n      actions.push('Removed stale daemon.json');\n    }\n\n    // Fix malformed daemon.json\n    if (check.name === 'Daemon' && check.detail.includes('parse error')) {\n      const daemonFile = path.join(vaultDir, DAEMON_STATE_FILENAME);\n      fs.unlinkSync(daemonFile);\n      actions.push('Removed malformed daemon.json');\n    }\n\n    // Advise on database issues\n    if (check.name === 'Database' && check.status === 'fail') {\n      actions.push('Run `myco init` to initialize the database');\n    }\n  }\n\n  return actions;\n}\n\n// --- Output formatting ---\n\n/** Status label width (visible characters). */\nconst STATUS_COL_WIDTH = 6;\n\nconst STATUS_LABELS: Record<DoctorCheck['status'], { text: string; color: string }> = {\n  ok: { text: 'ok', color: '\\x1b[32m' },\n  fail: { text: 'FAIL', color: '\\x1b[31m' },\n  warn: { text: '!!', color: '\\x1b[33m' },\n};\n\nfunction formatCheck(check: DoctorCheck): string {\n  const name = check.name ? check.name.padEnd(NAME_COL_WIDTH) : CONTINUATION_INDENT;\n  const { text, color } = STATUS_LABELS[check.status];\n  const paddedText = text.padEnd(STATUS_COL_WIDTH);\n  return `  ${name}${color}${paddedText}\\x1b[0m${check.detail}`;\n}\n\n// --- CLI entry point ---\n\nexport async function run(args: string[], vaultDir: string): Promise<void> {\n  const shouldFix = args.includes('--fix');\n\n  console.log('\\nmyco doctor\\n');\n\n  const checks = await runChecks(vaultDir);\n\n  for (const check of checks) {\n    console.log(formatCheck(check));\n  }\n\n  const issues = checks.filter(c => c.status !== 'ok');\n  const fixable = issues.filter(c => c.fixable);\n\n  console.log('');\n\n  if (issues.length === 0) {\n    console.log('  All checks passed.\\n');\n    return;\n  }\n\n  console.log(`  ${issues.length} issue(s) found.`);\n\n  if (shouldFix) {\n    const actions = await fix(vaultDir, checks);\n    if (actions.length > 0) {\n      console.log('');\n      for (const action of actions) {\n        console.log(`  Fixed: ${action}`);\n      }\n      console.log('');\n    } else {\n      console.log('  No auto-fixable issues.\\n');\n    }\n  } else if (fixable.length > 0) {\n    console.log(`  Run \\`myco doctor --fix\\` to repair ${fixable.length} fixable issue(s).\\n`);\n  } else {\n    console.log('');\n  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