@goondocks/myco 0.12.9 → 0.13.0

package/dist/chunk-TCGOSLW6.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/db/queries/batches.ts","../src/utils/error-message.ts","../src/db/queries/turns.ts","../src/db/queries/runs.ts","../src/db/queries/reports.ts","../src/db/queries/graph-edges.ts","../src/db/queries/lineage.ts","../src/db/queries/entities.ts","../src/db/queries/digest-extracts.ts"],"sourcesContent":["/**\n * Prompt batch CRUD query helpers.\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport { getDatabase } from '@myco/db/client.js';\nimport { DEFAULT_MACHINE_ID } from '@myco/constants.js';\nimport { syncRow } from '@myco/db/queries/team-outbox.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Default number of unprocessed batches returned when no limit given. */\nconst DEFAULT_UNPROCESSED_LIMIT = 100;\n\n/** Default number of batches returned by listBatchesBySession when no limit given. */\nexport const BATCHES_DEFAULT_LIMIT = 200;\n\n/** Batch status value when a batch is closed normally. */\nconst STATUS_COMPLETED = 'completed';\n\n/** Default batch status for new batches. */\nconst DEFAULT_STATUS = 'active';\n\n/** Default activity count for new batches. */\nconst DEFAULT_ACTIVITY_COUNT = 0;\n\n/** Default processed flag for new batches. */\nconst DEFAULT_PROCESSED = 0;\n\n/** Processed flag value indicating a batch has been processed. */\nconst PROCESSED_FLAG = 1;\n\n/** Number of characters used for prompt prefix matching. */\nconst PROMPT_PREFIX_MATCH_CHARS = 60;\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Filter options for `listBatchesBySession`. */\nexport interface ListBatchesBySessionOptions {\n  limit?: number;\n  offset?: number;\n}\n\n/** Fields required (or optional) when inserting a prompt batch. */\nexport interface BatchInsert {\n  session_id: string;\n  created_at: number;\n  prompt_number?: number | null;\n  user_prompt?: string | null;\n  response_summary?: string | null;\n  classification?: string | null;\n  started_at?: number | null;\n  ended_at?: number | null;\n  status?: string;\n  activity_count?: number;\n  processed?: number;\n  content_hash?: string | null;\n  machine_id?: string;\n}\n\n/** Row shape returned from batch queries. */\nexport interface BatchRow {\n  id: number;\n  session_id: string;\n  prompt_number: number | null;\n  user_prompt: string | null;\n  response_summary: string | null;\n  classification: string | null;\n  started_at: number | null;\n  ended_at: number | null;\n  status: string;\n  activity_count: number;\n  processed: number;\n  content_hash: string | null;\n  created_at: number;\n  machine_id: string;\n  synced_at: number | null;\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst BATCH_COLUMNS = [\n  'id',\n  'session_id',\n  'prompt_number',\n  'user_prompt',\n  'response_summary',\n  'classification',\n  'started_at',\n  'ended_at',\n  'status',\n  'activity_count',\n  'processed',\n  'content_hash',\n  'created_at',\n  'machine_id',\n  'synced_at',\n] as const;\n\nconst SELECT_COLUMNS = BATCH_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Normalize a SQLite result row into a typed BatchRow. */\nfunction toBatchRow(row: Record<string, unknown>): BatchRow {\n  return {\n    id: row.id as number,\n    session_id: row.session_id as string,\n    prompt_number: (row.prompt_number as number) ?? null,\n    user_prompt: (row.user_prompt as string) ?? null,\n    response_summary: (row.response_summary as string) ?? null,\n    classification: (row.classification as string) ?? null,\n    started_at: (row.started_at as number) ?? null,\n    ended_at: (row.ended_at as number) ?? null,\n    status: row.status as string,\n    activity_count: row.activity_count as number,\n    processed: row.processed as number,\n    content_hash: (row.content_hash as string) ?? null,\n    created_at: row.created_at as number,\n    machine_id: (row.machine_id as string) ?? DEFAULT_MACHINE_ID,\n    synced_at: (row.synced_at as number) ?? null,\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Insert a new prompt batch.\n *\n * The `id` is auto-generated by the INTEGER PRIMARY KEY (AUTOINCREMENT).\n * FTS5 index is kept in sync via a follow-up INSERT into prompt_batches_fts.\n */\nexport function insertBatch(data: BatchInsert): BatchRow {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `INSERT INTO prompt_batches (\n       session_id, prompt_number, user_prompt, response_summary,\n       classification, started_at, ended_at, status,\n       activity_count, processed, content_hash, created_at, machine_id\n     ) VALUES (\n       ?, ?, ?, ?,\n       ?, ?, ?, ?,\n       ?, ?, ?, ?, ?\n     )`,\n  ).run(\n    data.session_id,\n    data.prompt_number ?? null,\n    data.user_prompt ?? null,\n    data.response_summary ?? null,\n    data.classification ?? null,\n    data.started_at ?? null,\n    data.ended_at ?? null,\n    data.status ?? DEFAULT_STATUS,\n    data.activity_count ?? DEFAULT_ACTIVITY_COUNT,\n    data.processed ?? DEFAULT_PROCESSED,\n    data.content_hash ?? null,\n    data.created_at,\n    data.machine_id ?? DEFAULT_MACHINE_ID,\n  );\n\n  const batchId = Number(info.lastInsertRowid);\n\n  // FTS5 sync\n  const userPrompt = data.user_prompt ?? null;\n  if (userPrompt) {\n    db.prepare('INSERT INTO prompt_batches_fts(rowid, user_prompt) VALUES (?, ?)').run(batchId, userPrompt);\n  }\n\n  const row = toBatchRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM prompt_batches WHERE id = ?`).get(batchId) as Record<string, unknown>,\n  );\n\n  syncRow('prompt_batches', row);\n\n  return row;\n}\n\n/**\n * Close a batch — set status to 'completed' and record the end time.\n *\n * @returns the updated row, or null if the batch does not exist.\n */\nexport function closeBatch(\n  id: number,\n  endedAt: number,\n): BatchRow | null {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `UPDATE prompt_batches\n     SET status = ?, ended_at = ?\n     WHERE id = ?`,\n  ).run(STATUS_COMPLETED, endedAt, id);\n\n  if (info.changes === 0) return null;\n\n  return toBatchRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM prompt_batches WHERE id = ?`).get(id) as Record<string, unknown>,\n  );\n}\n\n/**\n * Populate response_summary on batches from transcript turns.\n *\n * Matches transcript turns (ordered by position) to batches (ordered by id ASC).\n * This is resilient to prompt_number duplicates caused by daemon restarts.\n * Only updates batches that don't already have a response_summary.\n *\n * @param sessionId — the session to update\n * @param responses — array of { response } ordered by turn position (1-indexed)\n */\nexport function populateBatchResponses(\n  sessionId: string,\n  responses: Array<{ turnIndex: number; response: string }>,\n): void {\n  const db = getDatabase();\n\n  // Get all batches for this session ordered by id (insertion order = true order)\n  const batches = db.prepare(\n    `SELECT id FROM prompt_batches WHERE session_id = ? ORDER BY id ASC`,\n  ).all(sessionId) as Array<{ id: number }>;\n\n  // Map each response to the batch at the same position\n  for (const { turnIndex, response } of responses) {\n    const batchIndex = turnIndex - 1; // turns are 1-indexed\n    if (batchIndex >= 0 && batchIndex < batches.length) {\n      const batchId = batches[batchIndex].id;\n      db.prepare(\n        `UPDATE prompt_batches SET response_summary = ? WHERE id = ? AND response_summary IS NULL`,\n      ).run(response, batchId);\n    }\n  }\n}\n\n/**\n * Get unprocessed batches, ordered by id ASC (insertion order).\n *\n * Supports cursor-based pagination via `after_id` and a `limit` cap.\n */\nexport function getUnprocessedBatches(\n  options: { after_id?: number; limit?: number } = {},\n): BatchRow[] {\n  const db = getDatabase();\n\n  const conditions: string[] = [`processed = ?`];\n  const params: unknown[] = [DEFAULT_PROCESSED];\n\n  if (options.after_id !== undefined) {\n    conditions.push(`id > ?`);\n    params.push(options.after_id);\n  }\n\n  const limit = options.limit ?? DEFAULT_UNPROCESSED_LIMIT;\n  params.push(limit);\n\n  const where = conditions.join(' AND ');\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM prompt_batches\n     WHERE ${where}\n     ORDER BY id ASC\n     LIMIT ?`,\n  ).all(...params) as Record<string, unknown>[];\n\n  return rows.map(toBatchRow);\n}\n\n/**\n * Increment the activity_count for a batch by 1.\n *\n * @returns the updated row, or null if the batch does not exist.\n */\nexport function incrementActivityCount(\n  id: number,\n): BatchRow | null {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `UPDATE prompt_batches\n     SET activity_count = activity_count + 1\n     WHERE id = ?`,\n  ).run(id);\n\n  if (info.changes === 0) return null;\n\n  return toBatchRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM prompt_batches WHERE id = ?`).get(id) as Record<string, unknown>,\n  );\n}\n\n/**\n * Mark a batch as processed (processed = 1).\n *\n * @returns the updated row, or null if the batch does not exist.\n */\nexport function markBatchProcessed(\n  id: number,\n): BatchRow | null {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `UPDATE prompt_batches\n     SET processed = ?\n     WHERE id = ?`,\n  ).run(PROCESSED_FLAG, id);\n\n  if (info.changes === 0) return null;\n\n  return toBatchRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM prompt_batches WHERE id = ?`).get(id) as Record<string, unknown>,\n  );\n}\n\n/**\n * Get a batch's ID by session and prompt number.\n * Used to link attachments to their prompt batch at stop time.\n */\nexport function getBatchIdByPromptNumber(\n  sessionId: string,\n  promptNumber: number,\n): number | null {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT id FROM prompt_batches WHERE session_id = ? AND prompt_number = ? LIMIT 1`,\n  ).get(sessionId, promptNumber) as { id: number } | undefined;\n\n  return row ? row.id : null;\n}\n\n/**\n * Find a batch by matching the start of its user_prompt text.\n * Used for attachment matching after transcript compaction where turn indices no longer\n * align with prompt_numbers.\n */\nexport function findBatchByPromptPrefix(\n  sessionId: string,\n  promptPrefix: string,\n): { id: number; prompt_number: number } | null {\n  const db = getDatabase();\n  // Match first N chars — enough to be unique, tolerant of minor differences\n  const prefix = promptPrefix.slice(0, PROMPT_PREFIX_MATCH_CHARS);\n  const row = db.prepare(\n    `SELECT id, prompt_number FROM prompt_batches\n     WHERE session_id = ? AND user_prompt LIKE ? || '%'\n     LIMIT 1`,\n  ).get(sessionId, prefix) as { id: number; prompt_number: number } | undefined;\n  return row ?? null;\n}\n\n/** Fields required when inserting a batch statelessly (prompt_number derived from DB). */\nexport interface StatelessBatchInsert {\n  session_id: string;\n  created_at: number;\n  user_prompt?: string | null;\n  started_at?: number | null;\n  status?: string;\n}\n\n/**\n * Insert a new prompt batch with prompt_number derived from an inline subquery.\n *\n * The prompt_number is set to `COALESCE(MAX(prompt_number), 0) + 1` for the\n * session, so the caller never needs a separate SELECT. This makes the insert\n * stateless — no in-memory counter required.\n *\n * FTS5 index is kept in sync via a follow-up INSERT into prompt_batches_fts.\n */\nexport function insertBatchStateless(data: StatelessBatchInsert): BatchRow {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `INSERT INTO prompt_batches (\n       session_id, prompt_number, user_prompt, response_summary,\n       classification, started_at, ended_at, status,\n       activity_count, processed, content_hash, created_at, machine_id\n     ) VALUES (\n       ?,\n       (SELECT COALESCE(MAX(prompt_number), 0) + 1 FROM prompt_batches WHERE session_id = ?),\n       ?, NULL,\n       NULL, ?, NULL, ?,\n       ?, ?, NULL, ?, ?\n     )`,\n  ).run(\n    data.session_id,\n    data.session_id,\n    data.user_prompt ?? null,\n    data.started_at ?? null,\n    data.status ?? DEFAULT_STATUS,\n    DEFAULT_ACTIVITY_COUNT,\n    DEFAULT_PROCESSED,\n    data.created_at,\n    DEFAULT_MACHINE_ID,\n  );\n\n  const batchId = Number(info.lastInsertRowid);\n\n  // FTS5 sync\n  const userPrompt = data.user_prompt ?? null;\n  if (userPrompt) {\n    db.prepare('INSERT INTO prompt_batches_fts(rowid, user_prompt) VALUES (?, ?)').run(batchId, userPrompt);\n  }\n\n  return toBatchRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM prompt_batches WHERE id = ?`).get(batchId) as Record<string, unknown>,\n  );\n}\n\n/**\n * Close all open batches for a session — blind UPDATE, no prior SELECT needed.\n *\n * Sets `status = 'completed'` and `ended_at` on every batch that has no\n * `ended_at` value yet. Returns the number of batches closed.\n */\nexport function closeOpenBatches(\n  sessionId: string,\n  endedAt: number,\n): number {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `UPDATE prompt_batches\n     SET status = ?, ended_at = ?\n     WHERE session_id = ? AND ended_at IS NULL`,\n  ).run(STATUS_COMPLETED, endedAt, sessionId);\n\n  return info.changes;\n}\n\n/**\n * Set response_summary on a batch if it doesn't already have one.\n *\n * Idempotent — only updates NULL response_summary.\n */\nexport function setResponseSummary(\n  batchId: number,\n  summary: string,\n): void {\n  const db = getDatabase();\n  db.prepare(\n    `UPDATE prompt_batches SET response_summary = ? WHERE id = ? AND response_summary IS NULL`,\n  ).run(summary, batchId);\n}\n\n/**\n * Get the most recent batch for a session (by id DESC), regardless of status.\n *\n * Used by processStopEvent to attach the AI response and images to the\n * correct batch without positional turn mapping.\n */\nexport function getLatestBatch(\n  sessionId: string,\n): BatchRow | null {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT ${SELECT_COLUMNS} FROM prompt_batches\n     WHERE session_id = ?\n     ORDER BY id DESC LIMIT 1`,\n  ).get(sessionId) as Record<string, unknown> | undefined;\n\n  if (!row) return null;\n  return toBatchRow(row);\n}\n\nexport function listBatchesBySession(\n  sessionId: string,\n  options: ListBatchesBySessionOptions = {},\n): BatchRow[] {\n  const db = getDatabase();\n\n  const limit = options.limit ?? BATCHES_DEFAULT_LIMIT;\n  const offset = options.offset ?? 0;\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM prompt_batches\n     WHERE session_id = ?\n     ORDER BY prompt_number ASC\n     LIMIT ?\n     OFFSET ?`,\n  ).all(sessionId, limit, offset) as Record<string, unknown>[];\n\n  return rows.map(toBatchRow);\n}\n","/**\n * Extract a human-readable error message from an unknown thrown value.\n *\n * Handles Error instances, strings, and arbitrary objects. Never throws.\n */\nexport function errorMessage(err: unknown): string {\n  if (err instanceof Error) return err.message || err.constructor.name || 'Error';\n  if (typeof err === 'string') return err || 'Empty string error';\n  try { return JSON.stringify(err); } catch { return 'Unserializable error'; }\n}\n","/**\n * Agent turn CRUD query helpers.\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport { getDatabase } from '@myco/db/client.js';\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Fields required (or optional) when inserting a turn. */\nexport interface TurnInsert {\n  run_id: string;\n  agent_id: string;\n  turn_number: number;\n  tool_name: string;\n  tool_input?: string | null;\n  tool_output_summary?: string | null;\n  started_at?: number | null;\n  completed_at?: number | null;\n}\n\n/** Row shape returned from agent_turns queries (all columns). */\nexport interface TurnRow {\n  id: number;\n  run_id: string;\n  agent_id: string;\n  turn_number: number;\n  tool_name: string;\n  tool_input: string | null;\n  tool_output_summary: string | null;\n  started_at: number | null;\n  completed_at: number | null;\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst TURN_COLUMNS = [\n  'id',\n  'run_id',\n  'agent_id',\n  'turn_number',\n  'tool_name',\n  'tool_input',\n  'tool_output_summary',\n  'started_at',\n  'completed_at',\n] as const;\n\nconst SELECT_COLUMNS = TURN_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Normalize a SQLite result row into a typed TurnRow. */\nfunction toTurnRow(row: Record<string, unknown>): TurnRow {\n  return {\n    id: row.id as number,\n    run_id: row.run_id as string,\n    agent_id: row.agent_id as string,\n    turn_number: row.turn_number as number,\n    tool_name: row.tool_name as string,\n    tool_input: (row.tool_input as string) ?? null,\n    tool_output_summary: (row.tool_output_summary as string) ?? null,\n    started_at: (row.started_at as number) ?? null,\n    completed_at: (row.completed_at as number) ?? null,\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Insert a new agent turn.\n *\n * The `id` is auto-generated by the INTEGER PRIMARY KEY (AUTOINCREMENT).\n */\nexport function insertTurn(data: TurnInsert): TurnRow {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `INSERT INTO agent_turns (\n       run_id, agent_id, turn_number, tool_name,\n       tool_input, tool_output_summary, started_at, completed_at\n     ) VALUES (\n       ?, ?, ?, ?,\n       ?, ?, ?, ?\n     )`,\n  ).run(\n    data.run_id,\n    data.agent_id,\n    data.turn_number,\n    data.tool_name,\n    data.tool_input ?? null,\n    data.tool_output_summary ?? null,\n    data.started_at ?? null,\n    data.completed_at ?? null,\n  );\n\n  const turnId = Number(info.lastInsertRowid);\n\n  return toTurnRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM agent_turns WHERE id = ?`).get(turnId) as Record<string, unknown>,\n  );\n}\n\n/**\n * List all turns for a specific run, ordered by turn_number ASC.\n */\nexport function listTurns(runId: string): TurnRow[] {\n  const db = getDatabase();\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM agent_turns\n     WHERE run_id = ?\n     ORDER BY turn_number ASC`,\n  ).all(runId) as Record<string, unknown>[];\n\n  return rows.map(toTurnRow);\n}\n\n/**\n * List all agent turns for a run, ordered by turn_number ASC.\n *\n * Alias for `listTurns` with an explicit \"by run\" naming convention used\n * by the dashboard API layer.\n */\nexport function listTurnsByRun(runId: string): TurnRow[] {\n  return listTurns(runId);\n}\n","/**\n * Agent run CRUD query helpers.\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport { getDatabase } from '@myco/db/client.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Default number of runs returned by listRuns when no limit given. */\nconst DEFAULT_LIST_LIMIT = 100;\n\n/** Default run status for new runs. */\nconst DEFAULT_STATUS = 'pending';\n\n/** Run status indicating the run is currently executing. */\nexport const STATUS_RUNNING = 'running';\n\n/** Run status for a successfully completed run. */\nexport const STATUS_COMPLETED = 'completed';\n\n/** Run status for a run that encountered an error. */\nexport const STATUS_FAILED = 'failed';\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Fields required (or optional) when inserting a run. */\nexport interface RunInsert {\n  id: string;\n  agent_id: string;\n  task?: string | null;\n  instruction?: string | null;\n  status?: string;\n  started_at?: number | null;\n  completed_at?: number | null;\n  tokens_used?: number | null;\n  cost_usd?: number | null;\n  actions_taken?: string | null;\n  error?: string | null;\n}\n\n/** Row shape returned from agent_runs queries (all columns). */\nexport interface RunRow {\n  id: string;\n  agent_id: string;\n  task: string | null;\n  instruction: string | null;\n  status: string;\n  started_at: number | null;\n  completed_at: number | null;\n  tokens_used: number | null;\n  cost_usd: number | null;\n  actions_taken: string | null;\n  error: string | null;\n}\n\n/** Completion data passed to updateRunStatus. */\nexport interface RunCompletion {\n  completed_at?: number;\n  tokens_used?: number;\n  cost_usd?: number;\n  actions_taken?: string;\n  error?: string;\n}\n\n/** Filter options for `listRuns`. */\nexport interface ListRunsOptions {\n  limit?: number;\n  offset?: number;\n  agent_id?: string;\n  status?: string;\n  task?: string;\n  search?: string;\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst RUN_COLUMNS = [\n  'id',\n  'agent_id',\n  'task',\n  'instruction',\n  'status',\n  'started_at',\n  'completed_at',\n  'tokens_used',\n  'cost_usd',\n  'actions_taken',\n  'error',\n] as const;\n\nconst SELECT_COLUMNS = RUN_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Normalize a SQLite result row into a typed RunRow. */\nfunction toRunRow(row: Record<string, unknown>): RunRow {\n  return {\n    id: row.id as string,\n    agent_id: row.agent_id as string,\n    task: (row.task as string) ?? null,\n    instruction: (row.instruction as string) ?? null,\n    status: row.status as string,\n    started_at: (row.started_at as number) ?? null,\n    completed_at: (row.completed_at as number) ?? null,\n    tokens_used: (row.tokens_used as number) ?? null,\n    cost_usd: (row.cost_usd as number) ?? null,\n    actions_taken: (row.actions_taken as string) ?? null,\n    error: (row.error as string) ?? null,\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Insert a new agent run.\n */\nexport function insertRun(data: RunInsert): RunRow {\n  const db = getDatabase();\n\n  db.prepare(\n    `INSERT INTO agent_runs (\n       id, agent_id, task, instruction, status,\n       started_at, completed_at, tokens_used, cost_usd,\n       actions_taken, error\n     ) VALUES (\n       ?, ?, ?, ?, ?,\n       ?, ?, ?, ?,\n       ?, ?\n     )`,\n  ).run(\n    data.id,\n    data.agent_id,\n    data.task ?? null,\n    data.instruction ?? null,\n    data.status ?? DEFAULT_STATUS,\n    data.started_at ?? null,\n    data.completed_at ?? null,\n    data.tokens_used ?? null,\n    data.cost_usd ?? null,\n    data.actions_taken ?? null,\n    data.error ?? null,\n  );\n\n  return toRunRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM agent_runs WHERE id = ?`).get(data.id) as Record<string, unknown>,\n  );\n}\n\n/**\n * Retrieve a single run by id.\n *\n * @returns the run row, or null if not found.\n */\nexport function getRun(id: string): RunRow | null {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT ${SELECT_COLUMNS} FROM agent_runs WHERE id = ?`,\n  ).get(id) as Record<string, unknown> | undefined;\n\n  if (!row) return null;\n  return toRunRow(row);\n}\n\n/** Build a WHERE clause and params array from ListRunsOptions filter fields. */\nfunction buildRunsWhere(\n  options: Omit<ListRunsOptions, 'limit' | 'offset'>,\n): { where: string; params: unknown[] } {\n  const conditions: string[] = [];\n  const params: unknown[] = [];\n\n  if (options.agent_id !== undefined) {\n    conditions.push(`agent_id = ?`);\n    params.push(options.agent_id);\n  }\n  if (options.status !== undefined) {\n    conditions.push(`status = ?`);\n    params.push(options.status);\n  }\n  if (options.task !== undefined) {\n    conditions.push(`task = ?`);\n    params.push(options.task);\n  }\n  if (options.search !== undefined && options.search.length > 0) {\n    conditions.push(`task LIKE ?`);\n    params.push(`%${options.search}%`);\n  }\n\n  return {\n    where: conditions.length > 0 ? `WHERE ${conditions.join(' AND ')}` : '',\n    params,\n  };\n}\n\n/**\n * List runs with optional filters, ordered by started_at DESC (nulls last).\n */\nexport function listRuns(\n  options: ListRunsOptions = {},\n): RunRow[] {\n  const db = getDatabase();\n  const { where, params } = buildRunsWhere(options);\n  const limit = options.limit ?? DEFAULT_LIST_LIMIT;\n  const offset = options.offset ?? 0;\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM agent_runs\n     ${where}\n     ORDER BY started_at DESC NULLS LAST\n     LIMIT ?\n     OFFSET ?`,\n  ).all(...params, limit, offset) as Record<string, unknown>[];\n\n  return rows.map(toRunRow);\n}\n\n/**\n * Count runs matching the given filters (no limit/offset).\n */\nexport function countRuns(\n  options: Omit<ListRunsOptions, 'limit' | 'offset'> = {},\n): number {\n  const db = getDatabase();\n  const { where, params } = buildRunsWhere(options);\n\n  const row = db.prepare(\n    `SELECT COUNT(*) as count FROM agent_runs ${where}`,\n  ).get(...params) as { count: number };\n\n  return row.count;\n}\n\n/**\n * Update a run's status, with optional completion data.\n *\n * @returns the updated row, or null if the run does not exist.\n */\nexport function updateRunStatus(\n  id: string,\n  status: string,\n  completion?: RunCompletion,\n): RunRow | null {\n  const db = getDatabase();\n\n  const setClauses: string[] = ['status = ?'];\n  const params: unknown[] = [status];\n\n  if (completion?.completed_at !== undefined) {\n    setClauses.push(`completed_at = ?`);\n    params.push(completion.completed_at);\n  }\n\n  if (completion?.tokens_used !== undefined) {\n    setClauses.push(`tokens_used = ?`);\n    params.push(completion.tokens_used);\n  }\n\n  if (completion?.cost_usd !== undefined) {\n    setClauses.push(`cost_usd = ?`);\n    params.push(completion.cost_usd);\n  }\n\n  if (completion?.actions_taken !== undefined) {\n    setClauses.push(`actions_taken = ?`);\n    params.push(completion.actions_taken);\n  }\n\n  if (completion?.error !== undefined) {\n    setClauses.push(`error = ?`);\n    params.push(completion.error);\n  }\n\n  params.push(id);\n\n  const info = db.prepare(\n    `UPDATE agent_runs\n     SET ${setClauses.join(', ')}\n     WHERE id = ?`,\n  ).run(...params);\n\n  if (info.changes === 0) return null;\n\n  return toRunRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM agent_runs WHERE id = ?`).get(id) as Record<string, unknown>,\n  );\n}\n\n/**\n * Get the currently running run for an agent, if any.\n *\n * @returns the running run row, or null if no run is active.\n */\nexport function getRunningRun(\n  agentId: string,\n): RunRow | null {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM agent_runs\n     WHERE agent_id = ? AND status = ?\n     ORDER BY started_at DESC NULLS LAST\n     LIMIT 1`,\n  ).get(agentId, STATUS_RUNNING) as Record<string, unknown> | undefined;\n\n  if (!row) return null;\n  return toRunRow(row);\n}\n","/**\n * Agent report CRUD query helpers.\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport { getDatabase } from '@myco/db/client.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Default number of reports returned by list queries when no limit given. */\nconst DEFAULT_LIST_LIMIT = 100;\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Fields required (or optional) when inserting a report. */\nexport interface ReportInsert {\n  run_id: string;\n  agent_id: string;\n  action: string;\n  summary: string;\n  details?: string | null;\n  created_at: number;\n}\n\n/** Row shape returned from agent_reports queries (all columns). */\nexport interface ReportRow {\n  id: number;\n  run_id: string;\n  agent_id: string;\n  action: string;\n  summary: string;\n  details: string | null;\n  created_at: number;\n}\n\n/** Filter options for `listReportsByAgent`. */\nexport interface ListReportsByAgentOptions {\n  limit?: number;\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst REPORT_COLUMNS = [\n  'id',\n  'run_id',\n  'agent_id',\n  'action',\n  'summary',\n  'details',\n  'created_at',\n] as const;\n\nconst SELECT_COLUMNS = REPORT_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Normalize a SQLite result row into a typed ReportRow. */\nfunction toReportRow(row: Record<string, unknown>): ReportRow {\n  return {\n    id: row.id as number,\n    run_id: row.run_id as string,\n    agent_id: row.agent_id as string,\n    action: row.action as string,\n    summary: row.summary as string,\n    details: (row.details as string) ?? null,\n    created_at: row.created_at as number,\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Insert a new agent report.\n *\n * The `id` is auto-generated by the INTEGER PRIMARY KEY (AUTOINCREMENT).\n */\nexport function insertReport(data: ReportInsert): ReportRow {\n  const db = getDatabase();\n\n  const info = db.prepare(\n    `INSERT INTO agent_reports (\n       run_id, agent_id, action, summary, details, created_at\n     ) VALUES (\n       ?, ?, ?, ?, ?, ?\n     )`,\n  ).run(\n    data.run_id,\n    data.agent_id,\n    data.action,\n    data.summary,\n    data.details ?? null,\n    data.created_at,\n  );\n\n  const reportId = Number(info.lastInsertRowid);\n\n  return toReportRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM agent_reports WHERE id = ?`).get(reportId) as Record<string, unknown>,\n  );\n}\n\n/**\n * List all reports for a specific run, ordered by created_at ASC.\n */\nexport function listReports(runId: string): ReportRow[] {\n  const db = getDatabase();\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM agent_reports\n     WHERE run_id = ?\n     ORDER BY created_at ASC`,\n  ).all(runId) as Record<string, unknown>[];\n\n  return rows.map(toReportRow);\n}\n\n/**\n * List reports by agent, ordered by created_at DESC.\n */\nexport function listReportsByAgent(\n  agentId: string,\n  options: ListReportsByAgentOptions = {},\n): ReportRow[] {\n  const db = getDatabase();\n\n  const limit = options.limit ?? DEFAULT_LIST_LIMIT;\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM agent_reports\n     WHERE agent_id = ?\n     ORDER BY created_at DESC\n     LIMIT ?`,\n  ).all(agentId, limit) as Record<string, unknown>[];\n\n  return rows.map(toReportRow);\n}\n","/**\n * Graph edge CRUD query helpers.\n *\n * Unlike the `edges` table (which has FK constraints to entities), `graph_edges`\n * supports edges between any node types (session, batch, spore, entity).\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport crypto from 'node:crypto';\nimport { getDatabase } from '@myco/db/client.js';\nimport { QUERY_DEFAULT_LIST_LIMIT, GRAPH_EDGE_DEFAULT_CONFIDENCE, DEFAULT_MACHINE_ID } from '@myco/constants.js';\nimport { syncRow } from '@myco/db/queries/team-outbox.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Default BFS traversal depth. */\nconst DEFAULT_BFS_DEPTH = 2;\n\n/** Maximum BFS traversal depth (capped for performance). */\nconst MAX_BFS_DEPTH = 5;\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Valid node types in the graph. */\nexport type GraphNodeType = 'session' | 'batch' | 'spore' | 'entity';\n\n/** Lineage edge types (auto-created by daemon, no LLM). */\nexport type LineageEdgeType = 'FROM_SESSION' | 'EXTRACTED_FROM' | 'DERIVED_FROM' | 'HAS_BATCH';\n\n/** Semantic edge types (created by intelligence agent, LLM-driven). */\nexport type SemanticEdgeType = 'RELATES_TO' | 'SUPERSEDED_BY' | 'REFERENCES' | 'DEPENDS_ON' | 'AFFECTS';\n\n/** All valid graph edge types. */\nexport type GraphEdgeType = LineageEdgeType | SemanticEdgeType;\n\n/** Fields required (or optional) when inserting a graph edge. */\nexport interface GraphEdgeInsert {\n  agent_id: string;\n  source_id: string;\n  source_type: GraphNodeType;\n  target_id: string;\n  target_type: GraphNodeType;\n  type: GraphEdgeType;\n  created_at: number;\n  session_id?: string;\n  confidence?: number;\n  properties?: string;\n  machine_id?: string;\n}\n\n/** Row shape returned from graph edge queries. */\nexport interface GraphEdgeRow {\n  id: string;\n  agent_id: string;\n  source_id: string;\n  source_type: string;\n  target_id: string;\n  target_type: string;\n  type: string;\n  session_id: string | null;\n  confidence: number;\n  properties: string | null;\n  created_at: number;\n  machine_id: string;\n  synced_at: number | null;\n}\n\n/** Filter options for `listGraphEdges`. */\nexport interface ListGraphEdgesOptions {\n  sourceId?: string;\n  targetId?: string;\n  type?: string;\n  agentId?: string;\n  limit?: number;\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst GRAPH_EDGE_COLUMNS = [\n  'id',\n  'agent_id',\n  'source_id',\n  'source_type',\n  'target_id',\n  'target_type',\n  'type',\n  'session_id',\n  'confidence',\n  'properties',\n  'created_at',\n  'machine_id',\n  'synced_at',\n] as const;\n\nconst SELECT_COLUMNS = GRAPH_EDGE_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Normalize a SQLite result row into a typed GraphEdgeRow. */\nfunction toGraphEdgeRow(row: Record<string, unknown>): GraphEdgeRow {\n  return {\n    id: row.id as string,\n    agent_id: row.agent_id as string,\n    source_id: row.source_id as string,\n    source_type: row.source_type as string,\n    target_id: row.target_id as string,\n    target_type: row.target_type as string,\n    type: row.type as string,\n    session_id: (row.session_id as string) ?? null,\n    confidence: row.confidence as number,\n    properties: (row.properties as string) ?? null,\n    created_at: row.created_at as number,\n    machine_id: (row.machine_id as string) ?? DEFAULT_MACHINE_ID,\n    synced_at: (row.synced_at as number) ?? null,\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Insert a new graph edge.\n *\n * Generates a UUID id automatically.\n */\nexport function insertGraphEdge(data: GraphEdgeInsert): GraphEdgeRow {\n  const db = getDatabase();\n  const id = crypto.randomUUID();\n\n  db.prepare(\n    `INSERT INTO graph_edges (\n       id, agent_id, source_id, source_type, target_id, target_type,\n       type, session_id, confidence, properties, created_at, machine_id\n     ) VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)`,\n  ).run(\n    id,\n    data.agent_id,\n    data.source_id,\n    data.source_type,\n    data.target_id,\n    data.target_type,\n    data.type,\n    data.session_id ?? null,\n    data.confidence ?? GRAPH_EDGE_DEFAULT_CONFIDENCE,\n    data.properties ?? null,\n    data.created_at,\n    data.machine_id ?? DEFAULT_MACHINE_ID,\n  );\n\n  const row = toGraphEdgeRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM graph_edges WHERE id = ?`).get(id) as Record<string, unknown>,\n  );\n\n  syncRow('graph_edges', row);\n\n  return row;\n}\n\n/**\n * List graph edges with optional filters, ordered by created_at DESC.\n */\nexport function listGraphEdges(\n  options: ListGraphEdgesOptions = {},\n): GraphEdgeRow[] {\n  const db = getDatabase();\n\n  const conditions: string[] = [];\n  const params: unknown[] = [];\n\n  if (options.sourceId !== undefined) {\n    conditions.push(`source_id = ?`);\n    params.push(options.sourceId);\n  }\n\n  if (options.targetId !== undefined) {\n    conditions.push(`target_id = ?`);\n    params.push(options.targetId);\n  }\n\n  if (options.type !== undefined) {\n    conditions.push(`type = ?`);\n    params.push(options.type);\n  }\n\n  if (options.agentId !== undefined) {\n    conditions.push(`agent_id = ?`);\n    params.push(options.agentId);\n  }\n\n  const where = conditions.length > 0 ? `WHERE ${conditions.join(' AND ')}` : '';\n  const limit = options.limit ?? QUERY_DEFAULT_LIST_LIMIT;\n\n  params.push(limit);\n\n  const rows = db.prepare(\n    `SELECT ${SELECT_COLUMNS}\n     FROM graph_edges\n     ${where}\n     ORDER BY created_at DESC\n     LIMIT ?`,\n  ).all(...params) as Record<string, unknown>[];\n\n  return rows.map(toGraphEdgeRow);\n}\n\n/**\n * BFS traversal from a node across graph edges.\n *\n * Returns all edges reachable within `depth` hops from the starting node.\n *\n * @param nodeId   - The starting node ID.\n * @param nodeType - The starting node type.\n * @param options  - Optional depth limit (default 2, max 5).\n */\nexport function getGraphForNode(\n  nodeId: string,\n  nodeType: GraphNodeType,\n  options?: { depth?: number },\n): { edges: GraphEdgeRow[] } {\n  const db = getDatabase();\n  const depth = Math.min(Math.max(options?.depth ?? DEFAULT_BFS_DEPTH, 1), MAX_BFS_DEPTH);\n\n  const seenEdgeIds = new Set<string>();\n  const collectedEdges: GraphEdgeRow[] = [];\n  const visited = new Set<string>([`${nodeType}:${nodeId}`]);\n  let frontier = new Set<string>([nodeId]);\n\n  for (let hop = 0; hop < depth; hop++) {\n    if (frontier.size === 0) break;\n\n    const frontierArray = Array.from(frontier);\n    const placeholders = frontierArray.map(() => `?`).join(', ');\n\n    const rows = db.prepare(\n      `SELECT ${SELECT_COLUMNS}\n       FROM graph_edges\n       WHERE source_id IN (${placeholders}) OR target_id IN (${placeholders})`,\n    ).all(...frontierArray, ...frontierArray) as Record<string, unknown>[];\n\n    const nextFrontier = new Set<string>();\n\n    for (const row of rows) {\n      const edge = toGraphEdgeRow(row);\n      if (!seenEdgeIds.has(edge.id)) {\n        seenEdgeIds.add(edge.id);\n        collectedEdges.push(edge);\n      }\n      const sourceKey = `${edge.source_type}:${edge.source_id}`;\n      const targetKey = `${edge.target_type}:${edge.target_id}`;\n      if (!visited.has(sourceKey)) {\n        visited.add(sourceKey);\n        nextFrontier.add(edge.source_id);\n      }\n      if (!visited.has(targetKey)) {\n        visited.add(targetKey);\n        nextFrontier.add(edge.target_id);\n      }\n    }\n\n    frontier = nextFrontier;\n  }\n\n  return { edges: collectedEdges };\n}\n","/**\n * Lineage edge creation helpers.\n *\n * Creates automatic graph edges when spores and batches are inserted.\n * These are structural (no LLM needed) — the daemon layer calls them.\n *\n * Edge types created:\n * - FROM_SESSION: spore -> session (the session it was extracted from)\n * - EXTRACTED_FROM: spore -> batch (the prompt batch it was extracted from)\n * - DERIVED_FROM: wisdom spore -> source spore (consolidation provenance)\n * - HAS_BATCH: session -> batch (prompt batch belongs to session)\n */\n\nimport { insertGraphEdge } from './graph-edges.js';\nimport {\n  EDGE_TYPE_FROM_SESSION,\n  EDGE_TYPE_EXTRACTED_FROM,\n  EDGE_TYPE_DERIVED_FROM,\n  EDGE_TYPE_HAS_BATCH,\n} from '@myco/constants.js';\n\n// ---------------------------------------------------------------------------\n// Spore lineage\n// ---------------------------------------------------------------------------\n\n/** Create lineage edges for a newly inserted spore. */\nexport function createSporeLineage(spore: {\n  id: string;\n  agent_id: string;\n  session_id?: string | null;\n  prompt_batch_id?: number | null;\n  observation_type?: string;\n  properties?: string | null;\n  created_at: number;\n}): void {\n  if (spore.session_id) {\n    insertGraphEdge({\n      agent_id: spore.agent_id,\n      source_id: spore.id,\n      source_type: 'spore',\n      target_id: spore.session_id,\n      target_type: 'session',\n      type: EDGE_TYPE_FROM_SESSION,\n      created_at: spore.created_at,\n    });\n  }\n\n  if (spore.prompt_batch_id != null) {\n    insertGraphEdge({\n      agent_id: spore.agent_id,\n      source_id: spore.id,\n      source_type: 'spore',\n      target_id: String(spore.prompt_batch_id),\n      target_type: 'batch',\n      type: EDGE_TYPE_EXTRACTED_FROM,\n      created_at: spore.created_at,\n    });\n  }\n\n  // DERIVED_FROM edges for wisdom spores\n  if (spore.observation_type === 'wisdom' && spore.properties) {\n    try {\n      const props = JSON.parse(spore.properties);\n      if (Array.isArray(props.consolidated_from)) {\n        for (const sourceId of props.consolidated_from) {\n          insertGraphEdge({\n            agent_id: spore.agent_id,\n            source_id: spore.id,\n            source_type: 'spore',\n            target_id: sourceId,\n            target_type: 'spore',\n            type: EDGE_TYPE_DERIVED_FROM,\n            created_at: spore.created_at,\n          });\n        }\n      }\n    } catch { /* ignore malformed properties */ }\n  }\n}\n\n// ---------------------------------------------------------------------------\n// Batch lineage\n// ---------------------------------------------------------------------------\n\n/** Create a HAS_BATCH lineage edge from session to batch. */\nexport function createBatchLineage(\n  agentId: string,\n  sessionId: string,\n  batchId: number,\n  createdAt: number,\n): void {\n  insertGraphEdge({\n    agent_id: agentId,\n    source_id: sessionId,\n    source_type: 'session',\n    target_id: String(batchId),\n    target_type: 'batch',\n    type: EDGE_TYPE_HAS_BATCH,\n    created_at: createdAt,\n  });\n}\n","/**\n * Entity CRUD query helpers for the knowledge graph.\n *\n * All functions obtain the SQLite instance internally via `getDatabase()`.\n * Queries use positional `?` placeholders throughout (better-sqlite3).\n */\n\nimport { getDatabase } from '@myco/db/client.js';\nimport { DEFAULT_MACHINE_ID } from '@myco/constants.js';\nimport { getGraphForNode, type GraphEdgeRow } from '@myco/db/queries/graph-edges.js';\nimport { syncRow } from '@myco/db/queries/team-outbox.js';\n\n// ---------------------------------------------------------------------------\n// Constants\n// ---------------------------------------------------------------------------\n\n/** Default number of entities returned by listEntities when no limit given. */\nconst DEFAULT_LIST_LIMIT = 100;\n\n// ---------------------------------------------------------------------------\n// Types\n// ---------------------------------------------------------------------------\n\n/** Fields required (or optional) when inserting an entity. */\nexport interface EntityInsert {\n  id: string;\n  agent_id: string;\n  type: string;\n  name: string;\n  first_seen: number;\n  last_seen: number;\n  properties?: string | null;\n  machine_id?: string;\n}\n\n/** Row shape returned from entity queries (all columns). */\nexport interface EntityRow {\n  id: string;\n  agent_id: string;\n  type: string;\n  name: string;\n  properties: string | null;\n  first_seen: number;\n  last_seen: number;\n  status: string;\n  machine_id: string;\n  synced_at: number | null;\n}\n\n/** Filter options for `listEntities`. */\nexport interface ListEntitiesOptions {\n  agent_id?: string;\n  type?: string;\n  /** Filter by exact entity name. */\n  name?: string;\n  /** Filter by status (default 'active'). */\n  status?: string;\n  /** Filter by entity_mentions subquery — must be paired with note_type. */\n  mentioned_in?: string;\n  /** Required when mentioned_in is provided. */\n  note_type?: string;\n  limit?: number;\n  offset?: number;\n}\n\n/** Return type for `getEntityWithEdges`. */\nexport interface EntityGraph {\n  center: EntityRow;\n  nodes: EntityRow[];\n  edges: GraphEdgeRow[];\n}\n\n// ---------------------------------------------------------------------------\n// Column list\n// ---------------------------------------------------------------------------\n\nconst ENTITY_COLUMNS = [\n  'id',\n  'agent_id',\n  'type',\n  'name',\n  'properties',\n  'first_seen',\n  'last_seen',\n  'status',\n  'machine_id',\n  'synced_at',\n] as const;\n\nconst SELECT_COLUMNS = ENTITY_COLUMNS.join(', ');\n\n// ---------------------------------------------------------------------------\n// Helpers\n// ---------------------------------------------------------------------------\n\n/** Normalize a SQLite result row into a typed EntityRow. */\nfunction toEntityRow(row: Record<string, unknown>): EntityRow {\n  return {\n    id: row.id as string,\n    agent_id: row.agent_id as string,\n    type: row.type as string,\n    name: row.name as string,\n    properties: (row.properties as string) ?? null,\n    first_seen: row.first_seen as number,\n    last_seen: row.last_seen as number,\n    status: (row.status as string) ?? 'active',\n    machine_id: (row.machine_id as string) ?? DEFAULT_MACHINE_ID,\n    synced_at: (row.synced_at as number) ?? null,\n  };\n}\n\n// ---------------------------------------------------------------------------\n// Public API\n// ---------------------------------------------------------------------------\n\n/**\n * Insert or update an entity. Uses UPSERT on (agent_id, type, name).\n *\n * On conflict, updates properties (if provided) and last_seen.\n */\nexport function insertEntity(data: EntityInsert): EntityRow {\n  const db = getDatabase();\n\n  db.prepare(\n    `INSERT INTO entities (id, agent_id, type, name, properties, first_seen, last_seen, machine_id)\n     VALUES (?, ?, ?, ?, ?, ?, ?, ?)\n     ON CONFLICT (agent_id, type, name) DO UPDATE SET\n       properties = COALESCE(EXCLUDED.properties, entities.properties),\n       last_seen = EXCLUDED.last_seen`,\n  ).run(\n    data.id,\n    data.agent_id,\n    data.type,\n    data.name,\n    data.properties ?? null,\n    data.first_seen,\n    data.last_seen,\n    data.machine_id ?? DEFAULT_MACHINE_ID,\n  );\n\n  // On conflict, the passed-in id may not be the actual row id. Look up by unique key.\n  const row = toEntityRow(\n    db.prepare(`SELECT ${SELECT_COLUMNS} FROM entities WHERE agent_id = ? AND type = ? AND name = ?`).get(\n      data.agent_id,\n      data.type,\n      data.name,\n    ) as Record<string, unknown>,\n  );\n\n  syncRow('entities', row);\n\n  return row;\n}\n\n/**\n * Retrieve a single entity by id.\n *\n * @returns the entity row, or null if not found.\n */\nexport function getEntity(id: string): EntityRow | null {\n  const db = getDatabase();\n\n  const row = db.prepare(\n    `SELECT ${SELECT_COLUMNS} FROM entities WHERE id = ?`,\n  ).get(id) as Record<string, unknown> | undefined;\n\n  if (!row) return null;\n  return toEntityRow(row);\n}\n\n/**\n * List entities with optional filters, ordered by last_seen DESC.\n *\n * Defaults to `status = 'active'` — archived entities are excluded unless\n * `status` is explicitly provided. Pass `status: undefined` in options to\n * get only active entities (the default), or set a specific status string.\n *\n * When both `mentioned_in` and `note_type` are provided, filters to entities\n * referenced in a specific note via the entity_mentions subquery.\n */\nexport function listEntities(\n  options: ListEntitiesOptions = {},\n): EntityRow[] {\n  const db = getDatabase();\n\n  const conditions: string[] = [];\n  const params: unknown[] = [];\n\n  if (options.agent_id !== undefined) {\n    conditions.push(`agent_id = ?`);\n    params.push(options.agent_id);\n  }\n\n  if (options.type !== undefined) {\n    conditions.push(`type = ?`);\n    params.push(options.type);\n  }\n\n  if (options.name !== undefined) {\n    conditions.push(`name = ?`);\n    params.push(options.name);\n  }\n\n  // Default: only show active entities (status column added in v5)\n  if (options.status !== undefined) {\n    conditions.push(`status = ?`);\n    params.push(options.status);\n  } else {\n    conditions.push(`status = ?`);\n    params.push('active');\n  }\n\n  if (options.mentioned_in !== undefined && options.note_type !== undefined) {\n    conditions.push(\n      `id IN (SELECT entity_id FROM entity_mentions WHERE note_id = ? AND note_type = ?)`,\n    );\n    params.push(options.mentioned_in);\n    params.push(options.note_type);\n  }\n\n  const where = conditions.length > 0 ? `WHERE ${conditions.join(' AND ')}` : '';\n  const limit = options.limit ?? 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package/dist/chunk-UGUJJ7QP.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/symbionts/installer.ts","../src/cli/shared.ts"],"sourcesContent":["import type { SymbiontManifest } from './manifest-schema.js';\nimport fs from 'node:fs';\nimport path from 'node:path';\n\n/** Prefix used to identify Myco-owned hooks in settings files. */\nconst MYCO_HOOK_COMMAND_PREFIX = 'myco-run';\nconst MYCO_HOOK_GUARD_PREFIX = 'node .agents/myco-hook.cjs';\n\n/** Check if a command string belongs to Myco (old or new guard format). */\nfunction isMycoHookCommand(command: string): boolean {\n  return command.startsWith(MYCO_HOOK_COMMAND_PREFIX) || command.startsWith(MYCO_HOOK_GUARD_PREFIX);\n}\n\n/**\n * Check if a hook group is Myco-owned.\n * Handles both nested format (Claude Code, Codex, etc.) and flat format (Windsurf).\n *\n * Nested: { hooks: [{ command: \"node .agents/myco-hook.cjs ...\" }] }\n * Flat:   { command: \"node .agents/myco-hook.cjs ...\" }\n */\nfunction isMycoHookGroup(group: Record<string, unknown>): boolean {\n  // Nested format: { hooks: [{ command: \"...\" }] }\n  if (Array.isArray(group.hooks) && group.hooks.some((h: { command?: string }) => h.command && isMycoHookCommand(h.command))) return true;\n  // Flat format: { command: \"...\" }\n  if (typeof group.command === 'string' && isMycoHookCommand(group.command)) return true;\n  return false;\n}\n\n/** Comment header for Myco entries in .gitignore. */\nconst GITIGNORE_SKILLS_COMMENT = '# Myco skill symlinks (machine-specific)';\n\n/** Subdirectory within the package where symbiont templates live. */\nconst TEMPLATES_SUBDIR = 'src/symbionts/templates';\n\n/** Filename of the hook guard template in the templates directory. */\nconst HOOK_GUARD_TEMPLATE_FILENAME = 'hook-guard.cjs';\n\n/** Filename when installed into the project .agents/ directory. */\nconst HOOK_GUARD_INSTALLED_FILENAME = 'myco-hook.cjs';\n\n/** Project-relative path where the hook guard is installed. */\nconst HOOK_GUARD_PROJECT_PATH = `.agents/${HOOK_GUARD_INSTALLED_FILENAME}`;\n\n/** Subdirectory within the package where skills live. */\nconst SKILLS_SUBDIR = 'skills';\n\n/** Canonical cross-agent skills directory. */\nconst CANONICAL_SKILLS_DIR = '.agents/skills';\n\n/** MCP server name used by Myco in all symbiont configurations. */\nexport const MYCO_MCP_SERVER_NAME = 'myco';\n\n/** Marker text used to identify unmodified instruction stubs. */\nconst INSTRUCTIONS_STUB_MARKER = 'Edit AGENTS.md, not this file';\n\n/** Start/end markers for the reference block prepended to existing instruction files. */\nconst INSTRUCTIONS_REF_START = '<!-- myco:agents-ref:start -->';\nconst INSTRUCTIONS_REF_END = '<!-- myco:agents-ref:end -->';\n\n/** Reference block prepended to existing instruction files. */\nconst INSTRUCTIONS_REF_BLOCK = `${INSTRUCTIONS_REF_START}\n> **Project intelligence:** This project uses [Myco](https://myco.sh). The canonical project rules are in [\\`AGENTS.md\\`](AGENTS.md) — read and follow it alongside this file.\n${INSTRUCTIONS_REF_END}\n\n`;\n\nexport interface InstallResult {\n  hooks: boolean;\n  mcp: boolean;\n  skills: boolean;\n  settings: boolean;\n  instructions: boolean;\n}\n\nexport class SymbiontInstaller {\n  constructor(\n    private manifest: SymbiontManifest,\n    private projectRoot: string,\n    private packageRoot: string,\n  ) {}\n\n  /**\n   * Copy the hook-guard script into .agents/myco-hook.cjs.\n   * Returns true if the file was written (or updated); false if skipped or N/A.\n   */\n  installHookGuard(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.hooksTarget) return false;\n\n    const guardTemplate = this.loadHookGuardTemplate();\n    if (!guardTemplate) return false;\n\n    const targetPath = path.join(this.projectRoot, HOOK_GUARD_PROJECT_PATH);\n\n    // Skip if already current\n    try {\n      if (fs.readFileSync(targetPath, 'utf-8') === guardTemplate) return false;\n    } catch { /* doesn't exist — proceed */ }\n\n    fs.mkdirSync(path.dirname(targetPath), { recursive: true });\n    fs.writeFileSync(targetPath, guardTemplate, 'utf-8');\n    return true;\n  }\n\n  /**\n   * Remove the hook-guard script from .agents/myco-hook.cjs.\n   * Returns true if the file was removed; false otherwise.\n   */\n  uninstallHookGuard(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.hooksTarget) return false;\n\n    const targetPath = path.join(this.projectRoot, HOOK_GUARD_PROJECT_PATH);\n    try {\n      fs.unlinkSync(targetPath);\n      return true;\n    } catch {\n      return false;\n    }\n  }\n\n  /** Load the hook-guard template from package root. */\n  private loadHookGuardTemplate(): string | null {\n    const candidates = [\n      path.join(this.packageRoot, TEMPLATES_SUBDIR, HOOK_GUARD_TEMPLATE_FILENAME),\n      path.join(this.packageRoot, 'dist', TEMPLATES_SUBDIR, HOOK_GUARD_TEMPLATE_FILENAME),\n    ];\n    for (const p of candidates) {\n      try { return fs.readFileSync(p, 'utf-8'); } catch { /* try next */ }\n    }\n    return null;\n  }\n\n  /** Load a JSON template file for this symbiont. Returns null if not found. */\n  loadTemplate(name: string): Record<string, unknown> | null {\n    // Check both source layout and dist layout\n    const candidates = [\n      path.join(this.packageRoot, TEMPLATES_SUBDIR, this.manifest.name, `${name}.json`),\n      // tsup preserves the src/ prefix under dist/, so the same subdir works in both layouts\n      path.join(this.packageRoot, 'dist', TEMPLATES_SUBDIR, this.manifest.name, `${name}.json`),\n    ];\n    for (const filePath of candidates) {\n      try {\n        return JSON.parse(fs.readFileSync(filePath, 'utf-8'));\n      } catch { /* not found or malformed — try next */ }\n    }\n    return null;\n  }\n\n  /** Run all registration steps. */\n  install(): InstallResult {\n    const reg = this.manifest.registration;\n    // Install hook guard before hooks so the guard script is in place when hooks reference it\n    this.installHookGuard();\n    const result = this.shouldBatchJsonTargets(reg)\n      ? this.installBatchedJson(reg!)\n      : {\n          hooks: this.installHooks(),\n          mcp: this.installMcp(),\n          skills: this.installSkills(),\n          settings: this.installSettings(),\n          instructions: this.installInstructions(),\n        };\n    this.updateGitignore();\n    return result;\n  }\n\n  /**\n   * Check if ALL non-null JSON targets share the same file (e.g., Gemini).\n   * Only batches when every target resolves to one path — partial overlaps\n   * (e.g., Claude Code: hooks+settings share but MCP is separate) use normal path.\n   */\n  private shouldBatchJsonTargets(reg: typeof this.manifest.registration): boolean {\n    if (!reg) return false;\n    const mcpFormat = reg.mcpFormat ?? 'json';\n    if (mcpFormat !== 'json') return false;\n    const targets = [reg.hooksTarget, reg.mcpTarget, reg.settingsTarget].filter(Boolean);\n    return targets.length > 1 && new Set(targets).size === 1;\n  }\n\n  /**\n   * Batched install for agents where hooks, MCP, and settings share one JSON file.\n   * Single read → apply all transforms in memory → single write.\n   */\n  private installBatchedJson(reg: NonNullable<typeof this.manifest.registration>): InstallResult {\n    const targetPath = path.join(this.projectRoot, reg.hooksTarget ?? reg.mcpTarget ?? reg.settingsTarget!);\n    let data = readJsonFile(targetPath);\n    let hooks = false, mcp = false, settings = false;\n\n    // Apply hooks transform\n    const hooksTemplate = reg.hooksTarget ? this.loadTemplate('hooks') : null;\n    if (hooksTemplate) {\n      const existingHooks = (data.hooks ?? {}) as Record<string, unknown[]>;\n      const mergedHooks: Record<string, unknown[]> = {};\n      for (const [event, groups] of Object.entries(existingHooks)) {\n        const nonMyco = (groups as Array<Record<string, unknown>>).filter((g) => !isMycoHookGroup(g));\n        if (nonMyco.length > 0) mergedHooks[event] = nonMyco;\n      }\n      for (const [event, groups] of Object.entries(hooksTemplate)) {\n        mergedHooks[event] = [...(mergedHooks[event] ?? []), ...(groups as unknown[])];\n      }\n      data.hooks = mergedHooks;\n      hooks = true;\n    }\n\n    // Apply MCP transform\n    const mcpTemplate = reg.mcpTarget ? this.loadTemplate('mcp') : null;\n    if (mcpTemplate) {\n      const servers = (data.mcpServers ?? {}) as Record<string, unknown>;\n      for (const [name, def] of Object.entries(mcpTemplate)) {\n        servers[name] = def;\n      }\n      data.mcpServers = servers;\n      mcp = true;\n    }\n\n    // Apply settings transform\n    const settingsTemplate = reg.settingsTarget ? this.loadTemplate('settings') : null;\n    if (settingsTemplate) {\n      data = deepMergeSettings(data, settingsTemplate);\n      settings = true;\n    }\n\n    writeJsonFile(targetPath, data);\n\n    return {\n      hooks,\n      mcp,\n      skills: this.installSkills(),\n      settings,\n      instructions: this.installInstructions(),\n    };\n  }\n\n  /** Remove all Myco registration from this symbiont's project files. */\n  uninstall(): InstallResult {\n    const reg = this.manifest.registration;\n    const result = this.shouldBatchJsonTargets(reg)\n      ? this.uninstallBatchedJson(reg!)\n      : {\n          hooks: this.uninstallHooks(),\n          mcp: this.uninstallMcp(),\n          skills: this.uninstallSkills(),\n          settings: this.uninstallSettings(),\n          instructions: this.uninstallInstructions(),\n        };\n    // Remove hook guard after hooks/settings so the file is cleaned up last\n    this.uninstallHookGuard();\n    this.cleanGitignore();\n    return result;\n  }\n\n  /**\n   * Batched uninstall for agents where hooks, MCP, and settings share one JSON file.\n   */\n  private uninstallBatchedJson(reg: NonNullable<typeof this.manifest.registration>): InstallResult {\n    const targetPath = path.join(this.projectRoot, reg.hooksTarget ?? reg.mcpTarget ?? reg.settingsTarget!);\n    const data = readJsonFile(targetPath);\n    if (Object.keys(data).length === 0) {\n      return { hooks: false, mcp: false, skills: this.uninstallSkills(), settings: false, instructions: this.uninstallInstructions() };\n    }\n\n    let hooks = false, mcp = false, settings = false;\n\n    // Remove hooks\n    if (reg.hooksTarget) {\n      const existingHooks = (data.hooks ?? {}) as Record<string, unknown[]>;\n      if (Object.keys(existingHooks).length > 0) {\n        const cleaned: Record<string, unknown[]> = {};\n        for (const [event, groups] of Object.entries(existingHooks)) {\n          const nonMyco = (groups as Array<Record<string, unknown>>).filter((g) => !isMycoHookGroup(g));\n          if (nonMyco.length > 0) cleaned[event] = nonMyco;\n        }\n        if (Object.keys(cleaned).length === 0) {\n          delete data.hooks;\n        } else {\n          data.hooks = cleaned;\n        }\n        hooks = true;\n      }\n    }\n\n    // Remove MCP\n    if (reg.mcpTarget) {\n      const servers = (data.mcpServers ?? {}) as Record<string, unknown>;\n      if (servers[MYCO_MCP_SERVER_NAME]) {\n        delete servers[MYCO_MCP_SERVER_NAME];\n        if (Object.keys(servers).length === 0) delete data.mcpServers;\n        else data.mcpServers = servers;\n        mcp = true;\n      }\n    }\n\n    // Remove settings\n    const settingsTemplate = reg.settingsTarget ? this.loadTemplate('settings') : null;\n    if (settingsTemplate) {\n      settings = deepRemoveSettings(data, settingsTemplate);\n    }\n\n    writeOrDeleteJsonFile(targetPath, data);\n\n    return { hooks, mcp, skills: this.uninstallSkills(), settings, instructions: this.uninstallInstructions() };\n  }\n\n  /**\n   * Ensure the instruction file references AGENTS.md.\n   * - File doesn't exist: write the full stub template.\n   * - File exists without reference: prepend a reference block.\n   * - File already has reference: skip (idempotent).\n   *\n   * Also ensures AGENTS.md exists — creates a starter if missing.\n   */\n  installInstructions(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.instructionsFile) return false;\n\n    // Ensure AGENTS.md exists before creating stubs that reference it\n    ensureAgentsMd(this.projectRoot, this.packageRoot);\n\n    const targetPath = path.join(this.projectRoot, reg.instructionsFile);\n\n    // Check if file already exists\n    let existing: string | null = null;\n    try { existing = fs.readFileSync(targetPath, 'utf-8'); } catch { /* doesn't exist */ }\n\n    if (existing !== null) {\n      // File exists — check if it already has our reference\n      if (existing.includes(INSTRUCTIONS_REF_START) || existing.includes(INSTRUCTIONS_STUB_MARKER)) {\n        return false; // Already has reference — idempotent\n      }\n      // Prepend reference block to existing content\n      fs.writeFileSync(targetPath, INSTRUCTIONS_REF_BLOCK + existing, 'utf-8');\n      return true;\n    }\n\n    // File doesn't exist — write the full stub template\n    const templateCandidates = [\n      path.join(this.packageRoot, 'src/symbionts/templates/instructions-stub.md'),\n      path.join(this.packageRoot, 'dist/src/symbionts/templates/instructions-stub.md'),\n    ];\n    let stub: string | null = null;\n    for (const p of templateCandidates) {\n      try { stub = fs.readFileSync(p, 'utf-8'); break; } catch { /* try next */ }\n    }\n    if (!stub) return false;\n\n    stub = stub.replace('{agentDisplayName}', this.manifest.displayName);\n    fs.mkdirSync(path.dirname(targetPath), { recursive: true });\n    fs.writeFileSync(targetPath, stub, 'utf-8');\n    return true;\n  }\n\n  /**\n   * Remove Myco's instruction file reference.\n   * - If file is the full stub (only Myco content): delete it.\n   * - If file has user content + prepended reference: remove just the reference block.\n   */\n  uninstallInstructions(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.instructionsFile) return false;\n\n    const targetPath = path.join(this.projectRoot, reg.instructionsFile);\n    let content: string;\n    try { content = fs.readFileSync(targetPath, 'utf-8'); } catch { return false; }\n\n    // Case 1: Full stub — delete the file entirely\n    if (content.includes(INSTRUCTIONS_STUB_MARKER)) {\n      fs.unlinkSync(targetPath);\n      return true;\n    }\n\n    // Case 2: Prepended reference block — remove just the block\n    if (content.includes(INSTRUCTIONS_REF_START)) {\n      const startIdx = content.indexOf(INSTRUCTIONS_REF_START);\n      const endIdx = content.indexOf(INSTRUCTIONS_REF_END);\n      if (endIdx > startIdx) {\n        // Remove from start marker through end marker + trailing whitespace\n        const afterEnd = endIdx + INSTRUCTIONS_REF_END.length;\n        const cleaned = (content.slice(0, startIdx) + content.slice(afterEnd)).replace(/^\\n+/, '');\n        fs.writeFileSync(targetPath, cleaned, 'utf-8');\n        return true;\n      }\n    }\n\n    return false;\n  }\n\n  /** List skill directory names from the package root. Returns empty array if not found. */\n  private listSkillDirs(): string[] {\n    try {\n      return fs.readdirSync(path.join(this.packageRoot, SKILLS_SUBDIR), { withFileTypes: true })\n        .filter((d) => d.isDirectory())\n        .map((d) => d.name);\n    } catch { return []; }\n  }\n\n  /**\n   * Reconcile Myco-owned skill entries in project .gitignore.\n   * Computes the desired entry set, strips any existing Myco block\n   * (and legacy entries), then writes the current block if changed.\n   */\n  private updateGitignore(): void {\n    const reg = this.manifest.registration;\n    if (!reg?.skillsTarget) return;\n\n    const skillNames = this.listSkillDirs();\n\n    // Desired state: per-skill entries for canonical + agent-specific paths\n    const desired = [\n      ...skillNames.map((name) => `${CANONICAL_SKILLS_DIR}/${name}`),\n      ...(reg.skillsTarget !== CANONICAL_SKILLS_DIR\n        ? skillNames.map((name) => `${reg.skillsTarget}/${name}`)\n        : []\n      ),\n    ];\n\n    const gitignorePath = path.join(this.projectRoot, '.gitignore');\n    let content = '';\n    try { content = fs.readFileSync(gitignorePath, 'utf-8'); } catch { /* doesn't exist yet */ }\n\n    // Strip existing Myco block and any legacy entries\n    const stripped = this.stripMycoGitignoreBlock(content, skillNames);\n\n    // Build the new block\n    const desiredBlock = desired.length > 0\n      ? `${GITIGNORE_SKILLS_COMMENT}\\n${desired.join('\\n')}\\n`\n      : '';\n\n    // Check if anything changed\n    if (stripped === content && desiredBlock === '') return;\n    const separator = stripped.length > 0 && !stripped.endsWith('\\n') ? '\\n' : '';\n    const spacer = stripped.length > 0 && desiredBlock.length > 0 ? '\\n' : '';\n    const result = stripped + separator + spacer + desiredBlock;\n    if (result === content) return;\n\n    fs.writeFileSync(gitignorePath, result, 'utf-8');\n  }\n\n  /**\n   * Remove all Myco-owned gitignore entries: the comment header, per-skill\n   * entries for both canonical and agent-specific paths, and legacy blanket\n   * directory entries. Returns the cleaned content.\n   */\n  private stripMycoGitignoreBlock(content: string, skillNames: string[]): string {\n    const reg = this.manifest.registration;\n    const ownedLines = new Set<string>([\n      GITIGNORE_SKILLS_COMMENT,\n      `${CANONICAL_SKILLS_DIR}/`, // legacy blanket entry\n    ]);\n    for (const name of skillNames) {\n      ownedLines.add(`${CANONICAL_SKILLS_DIR}/${name}`);\n      if (reg?.skillsTarget && reg.skillsTarget !== CANONICAL_SKILLS_DIR) {\n        ownedLines.add(`${reg.skillsTarget}/${name}`);\n      }\n    }\n\n    const lines = content.split('\\n');\n    const filtered = lines.filter((line) => !ownedLines.has(line));\n    return filtered.join('\\n').replace(/\\n{3,}/g, '\\n\\n').trimEnd() + (filtered.length > 0 ? '\\n' : '');\n  }\n\n  /**\n   * Merge hooks template into the target settings file.\n   * Replaces all Myco-owned hook groups; preserves non-Myco hooks.\n   */\n  installHooks(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.hooksTarget) return false;\n\n    const template = this.loadTemplate('hooks');\n    if (!template) return false;\n\n    const targetPath = path.join(this.projectRoot, reg.hooksTarget);\n    const settings = readJsonFile(targetPath);\n    const existingHooks = (settings.hooks ?? {}) as Record<string, unknown[]>;\n\n    // Build merged hooks: for each event, keep non-Myco groups + add template groups\n    const mergedHooks: Record<string, unknown[]> = {};\n\n    // Preserve non-Myco hooks from existing config\n    for (const [event, groups] of Object.entries(existingHooks)) {\n      const nonMycoGroups = (groups as Array<Record<string, unknown>>).filter(\n        (group) => !isMycoHookGroup(group),\n      );\n      if (nonMycoGroups.length > 0) {\n        mergedHooks[event] = nonMycoGroups;\n      }\n    }\n\n    // Add template hooks\n    for (const [event, groups] of Object.entries(template)) {\n      mergedHooks[event] = [...(mergedHooks[event] ?? []), ...(groups as unknown[])];\n    }\n\n    settings.hooks = mergedHooks;\n    writeJsonFile(targetPath, settings);\n    return true;\n  }\n\n  /**\n   * Merge MCP server template into the target config file.\n   * Replaces the `myco` server entry; preserves other servers.\n   */\n  installMcp(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.mcpTarget) return false;\n\n    const template = this.loadTemplate('mcp');\n    if (!template) return false;\n\n    const targetPath = path.join(this.projectRoot, reg.mcpTarget);\n    const mcpFormat = reg.mcpFormat ?? 'json';\n\n    if (mcpFormat === 'toml') {\n      return this.installMcpToml(targetPath, template);\n    }\n    return this.installMcpJson(targetPath, template);\n  }\n\n  /** Write MCP servers to a JSON config file. */\n  private installMcpJson(targetPath: string, template: Record<string, unknown>): boolean {\n    const config = readJsonFile(targetPath);\n    const servers = (config.mcpServers ?? {}) as Record<string, unknown>;\n\n    for (const [name, def] of Object.entries(template)) {\n      servers[name] = def;\n    }\n\n    config.mcpServers = servers;\n    writeJsonFile(targetPath, config);\n    return true;\n  }\n\n  /** Write MCP servers to a TOML config file. */\n  private installMcpToml(targetPath: string, template: Record<string, unknown>): boolean {\n    let raw = '';\n    try { raw = fs.readFileSync(targetPath, 'utf-8'); } catch { /* doesn't exist */ }\n\n    for (const [name, def] of Object.entries(template)) {\n      raw = buildTomlMcpSection(raw, name, def as Record<string, unknown>);\n    }\n\n    fs.mkdirSync(path.dirname(targetPath), { recursive: true });\n    fs.writeFileSync(targetPath, raw, 'utf-8');\n    return true;\n  }\n\n  /**\n   * Create symlinks for skills through .agents/skills/ canonical layer.\n   * Canonical: .agents/skills/<name> -> <packageRoot>/skills/<name>\n   * Agent-specific: <skillsTarget>/<name> -> ../../.agents/skills/<name>\n   */\n  installSkills(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.skillsTarget) return false;\n\n    const skillNames = this.listSkillDirs();\n    if (skillNames.length === 0) return false;\n\n    const skillsSrc = path.join(this.packageRoot, SKILLS_SUBDIR);\n\n    // Create canonical symlinks: .agents/skills/<name> -> package skills\n    const canonicalDir = path.join(this.projectRoot, CANONICAL_SKILLS_DIR);\n    fs.mkdirSync(canonicalDir, { recursive: true });\n\n    for (const name of skillNames) {\n      const canonicalLink = path.join(canonicalDir, name);\n      const target = path.join(skillsSrc, name);\n      ensureSymlink(canonicalLink, target);\n    }\n\n    // Create agent-specific symlinks if skillsTarget differs from canonical\n    const agentSkillsDir = path.join(this.projectRoot, reg.skillsTarget);\n    const canonicalRel = path.relative(agentSkillsDir, canonicalDir);\n\n    if (reg.skillsTarget !== CANONICAL_SKILLS_DIR) {\n      fs.mkdirSync(agentSkillsDir, { recursive: true });\n      for (const name of skillNames) {\n        const agentLink = path.join(agentSkillsDir, name);\n        const relTarget = path.join(canonicalRel, name);\n        ensureSymlink(agentLink, relTarget);\n      }\n    }\n\n    return true;\n  }\n\n  /**\n   * Merge settings template into the target settings file.\n   * Deep merges objects and deduplicates arrays.\n   */\n  installSettings(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.settingsTarget) return false;\n\n    const template = this.loadTemplate('settings');\n    if (!template) return false;\n\n    const targetPath = path.join(this.projectRoot, reg.settingsTarget);\n    const existing = readJsonFile(targetPath);\n    const merged = deepMergeSettings(existing, template);\n    writeJsonFile(targetPath, merged);\n    return true;\n  }\n\n  /**\n   * Remove Myco entries from the target settings file.\n   * Template-driven: loads the settings template and removes matching values.\n   * Arrays: filter out values present in the template.\n   * Objects: delete keys present in the template.\n   */\n  uninstallSettings(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.settingsTarget) return false;\n\n    const template = this.loadTemplate('settings');\n    if (!template) return false;\n\n    const targetPath = path.join(this.projectRoot, reg.settingsTarget);\n    const settings = readJsonFile(targetPath);\n    if (Object.keys(settings).length === 0) return false;\n\n    const changed = deepRemoveSettings(settings, template);\n    if (!changed) return false;\n\n    writeOrDeleteJsonFile(targetPath, settings);\n    return true;\n  }\n\n  /** Remove Myco hook groups from the target settings file. */\n  uninstallHooks(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.hooksTarget) return false;\n\n    const targetPath = path.join(this.projectRoot, reg.hooksTarget);\n    const settings = readJsonFile(targetPath);\n    const existingHooks = (settings.hooks ?? {}) as Record<string, unknown[]>;\n    if (Object.keys(existingHooks).length === 0) return false;\n\n    const cleaned: Record<string, unknown[]> = {};\n    for (const [event, groups] of Object.entries(existingHooks)) {\n      const nonMyco = (groups as Array<Record<string, unknown>>).filter(\n        (group) => !isMycoHookGroup(group),\n      );\n      if (nonMyco.length > 0) {\n        cleaned[event] = nonMyco;\n      }\n    }\n\n    if (Object.keys(cleaned).length === 0) {\n      delete settings.hooks;\n    } else {\n      settings.hooks = cleaned;\n    }\n\n    writeOrDeleteJsonFile(targetPath, settings);\n    return true;\n  }\n\n  /** Remove Myco MCP server entry from the target config file. */\n  uninstallMcp(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.mcpTarget) return false;\n\n    const targetPath = path.join(this.projectRoot, reg.mcpTarget);\n    const mcpFormat = reg.mcpFormat ?? 'json';\n\n    if (mcpFormat === 'toml') {\n      return this.uninstallMcpToml(targetPath);\n    }\n    return this.uninstallMcpJson(targetPath);\n  }\n\n  private uninstallMcpJson(targetPath: string): boolean {\n    const config = readJsonFile(targetPath);\n    const servers = (config.mcpServers ?? {}) as Record<string, unknown>;\n    if (!servers[MYCO_MCP_SERVER_NAME]) return false;\n\n    delete servers[MYCO_MCP_SERVER_NAME];\n\n    if (Object.keys(servers).length === 0) {\n      delete config.mcpServers;\n    } else {\n      config.mcpServers = servers;\n    }\n\n    writeOrDeleteJsonFile(targetPath, config);\n    return true;\n  }\n\n  private uninstallMcpToml(targetPath: string): boolean {\n    let raw = '';\n    try { raw = fs.readFileSync(targetPath, 'utf-8'); } catch { return false; }\n\n    const sectionHeader = `[mcp_servers.${MYCO_MCP_SERVER_NAME}]`;\n    if (!raw.includes(sectionHeader)) return false;\n\n    const startIdx = raw.indexOf(sectionHeader);\n    const endIdx = findTomlSectionEnd(raw, startIdx + sectionHeader.length, MYCO_MCP_SERVER_NAME);\n    const before = raw.slice(0, startIdx).trimEnd();\n    const after = raw.slice(endIdx).trimStart();\n    const updated = (before + (before && after ? '\\n\\n' : '') + after).trimEnd();\n\n    if (!updated.trim()) {\n      try { fs.unlinkSync(targetPath); } catch { /* ignore */ }\n    } else {\n      fs.writeFileSync(targetPath, updated + '\\n', 'utf-8');\n    }\n    return true;\n  }\n\n  /** Remove skill symlinks (canonical + agent-specific). */\n  uninstallSkills(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.skillsTarget) return false;\n\n    const skillNames = this.listSkillDirs();\n    if (skillNames.length === 0) return false;\n\n    let removed = false;\n\n    // Remove agent-specific symlinks\n    if (reg.skillsTarget !== CANONICAL_SKILLS_DIR) {\n      for (const name of skillNames) {\n        const link = path.join(this.projectRoot, reg.skillsTarget, name);\n        try { fs.unlinkSync(link); removed = true; } catch { /* doesn't exist */ }\n      }\n      // Remove agent skills dir if now empty (rmdirSync fails atomically if non-empty)\n      try { fs.rmdirSync(path.join(this.projectRoot, reg.skillsTarget)); } catch { /* not empty or missing */ }\n    }\n\n    // Remove canonical symlinks\n    const canonicalDir = path.join(this.projectRoot, CANONICAL_SKILLS_DIR);\n    for (const name of skillNames) {\n      const link = path.join(canonicalDir, name);\n      try { fs.unlinkSync(link); removed = true; } catch { /* doesn't exist */ }\n    }\n    // Remove empty dirs (rmdirSync fails atomically if non-empty)\n    try { fs.rmdirSync(canonicalDir); } catch { /* not empty or missing */ }\n    try { fs.rmdirSync(path.join(this.projectRoot, '.agents')); } catch { /* not empty or missing */ }\n\n    return removed;\n  }\n\n  /** Remove Myco entries from project .gitignore. */\n  private cleanGitignore(): void {\n    const gitignorePath = path.join(this.projectRoot, '.gitignore');\n    let content = '';\n    try { content = fs.readFileSync(gitignorePath, 'utf-8'); } catch { return; }\n\n    const cleaned = this.stripMycoGitignoreBlock(content, this.listSkillDirs()).trim();\n    if (cleaned) {\n      fs.writeFileSync(gitignorePath, cleaned + '\\n', 'utf-8');\n    } else {\n      try { fs.unlinkSync(gitignorePath); } catch { /* ignore */ }\n    }\n  }\n}\n\n// --- TOML helpers ---\n\n/** TOML section header pattern. */\nconst TOML_SECTION_RE = /^\\[([^\\]]+)\\]/;\n\n/** Find where a [mcp_servers.<name>] section ends in a TOML string. */\nfunction findTomlSectionEnd(raw: string, searchStart: number, serverName: string): number {\n  const subsectionPrefix = `mcp_servers.${serverName}.`;\n  const rawLines = raw.slice(searchStart).split('\\n');\n  let offset = searchStart;\n  for (const line of rawLines) {\n    offset += line.length + 1;\n    const m = line.match(TOML_SECTION_RE);\n    if (m && !m[1].startsWith(subsectionPrefix) && m[1] !== `mcp_servers.${serverName}`) {\n      return offset - line.length - 1;\n    }\n  }\n  return raw.length;\n}\n\n/**\n * Build/update a specific mcp_servers entry in a TOML string.\n * Pure transformation — returns updated content without writing to disk.\n */\nfunction buildTomlMcpSection(\n  raw: string,\n  serverName: string,\n  server: Record<string, unknown>,\n): string {\n  const sectionHeader = `[mcp_servers.${serverName}]`;\n\n  // Build the TOML block for this server\n  const lines: string[] = [sectionHeader];\n  for (const [key, val] of Object.entries(server)) {\n    if (key === 'env' && typeof val === 'object' && val !== null) continue; // Handle env as subtable\n    if (typeof val === 'string') {\n      lines.push(`${key} = \"${val}\"`);\n    } else if (Array.isArray(val)) {\n      lines.push(`${key} = [${val.map((v: unknown) => `\"${v}\"`).join(', ')}]`);\n    } else if (typeof val === 'boolean') {\n      lines.push(`${key} = ${val}`);\n    }\n  }\n\n  // Add env subtable if present\n  const env = server.env as Record<string, string> | undefined;\n  if (env && Object.keys(env).length > 0) {\n    lines.push('');\n    lines.push(`[mcp_servers.${serverName}.env]`);\n    for (const [key, val] of Object.entries(env)) {\n      lines.push(`${key} = \"${val}\"`);\n    }\n  }\n\n  const block = lines.join('\\n');\n\n  let updated: string;\n  if (raw.includes(sectionHeader)) {\n    const startIdx = raw.indexOf(sectionHeader);\n    const endIdx = findTomlSectionEnd(raw, startIdx + sectionHeader.length, serverName);\n    const before = raw.slice(0, startIdx).trimEnd();\n    const after = raw.slice(endIdx);\n    const separator = before ? '\\n\\n' : '';\n    updated = (before + separator + block + after).trimEnd() + '\\n';\n  } else {\n    // Append new section\n    const separator = raw.trim() ? '\\n\\n' : '';\n    updated = (raw.trimEnd() + separator + block).trimEnd() + '\\n';\n  }\n\n  return updated;\n}\n\n// --- Settings merge helpers ---\n\n/** Deep merge two settings objects. Arrays are appended + deduplicated; objects recurse. */\nfunction deepMergeSettings(\n  target: Record<string, unknown>,\n  source: Record<string, unknown>,\n): Record<string, unknown> {\n  const result = { ...target };\n  for (const [key, sourceVal] of Object.entries(source)) {\n    const targetVal = result[key];\n    if (Array.isArray(sourceVal) && Array.isArray(targetVal)) {\n      result[key] = [...new Set([...targetVal, ...sourceVal])];\n    } else if (isPlainObject(sourceVal) && isPlainObject(targetVal)) {\n      result[key] = deepMergeSettings(\n        targetVal as Record<string, unknown>,\n        sourceVal as Record<string, unknown>,\n      );\n    } else {\n      result[key] = sourceVal;\n    }\n  }\n  return result;\n}\n\nfunction isPlainObject(val: unknown): val is Record<string, unknown> {\n  return typeof val === 'object' && val !== null && !Array.isArray(val);\n}\n\n/**\n * Remove values from target that match the template structure.\n * Arrays: filter out values present in the template array.\n * Objects: delete keys present in the template object, recurse into nested objects.\n * Returns true if anything was removed.\n */\nfunction deepRemoveSettings(\n  target: Record<string, unknown>,\n  template: Record<string, unknown>,\n): boolean {\n  let changed = false;\n  for (const [key, templateVal] of Object.entries(template)) {\n    const targetVal = target[key];\n    if (targetVal === undefined) continue;\n\n    if (Array.isArray(templateVal) && Array.isArray(targetVal)) {\n      // Filter out values that appear in the template array\n      const templateSet = new Set(templateVal.map(String));\n      const filtered = targetVal.filter((v) => !templateSet.has(String(v)));\n      if (filtered.length !== targetVal.length) {\n        if (filtered.length > 0) {\n          target[key] = filtered;\n        } else {\n          delete target[key];\n        }\n        changed = true;\n      }\n    } else if (isPlainObject(templateVal) && isPlainObject(targetVal)) {\n      // Recurse into nested objects, then prune if empty\n      if (deepRemoveSettings(targetVal, templateVal)) {\n        if (Object.keys(targetVal).length === 0) {\n          delete target[key];\n        }\n        changed = true;\n      }\n    } else {\n      // Scalar: delete if value matches\n      if (String(targetVal) === String(templateVal)) {\n        delete target[key];\n        changed = true;\n      }\n    }\n  }\n  return changed;\n}\n\n// --- JSON helpers ---\n\nfunction readJsonFile(filePath: string): Record<string, unknown> {\n  try {\n    return JSON.parse(fs.readFileSync(filePath, 'utf-8'));\n  } catch {\n    return {};\n  }\n}\n\nfunction writeJsonFile(filePath: string, data: Record<string, unknown>): void {\n  fs.mkdirSync(path.dirname(filePath), { recursive: true });\n  fs.writeFileSync(filePath, JSON.stringify(data, null, 2) + '\\n', 'utf-8');\n}\n\n/** Write a JSON file, or delete it if the object is empty. */\nfunction writeOrDeleteJsonFile(filePath: string, data: Record<string, unknown>): void {\n  if (Object.keys(data).length === 0) {\n    try { fs.unlinkSync(filePath); } catch { /* ignore */ }\n  } else {\n    writeJsonFile(filePath, data);\n  }\n}\n\n/**\n * Create a starter AGENTS.md if the project doesn't have one.\n * Idempotent — skips if AGENTS.md already exists.\n */\nfunction ensureAgentsMd(projectRoot: string, packageRoot: string): void {\n  const agentsMdPath = path.join(projectRoot, 'AGENTS.md');\n  if (fs.existsSync(agentsMdPath)) return;\n\n  const candidates = [\n    path.join(packageRoot, 'src/symbionts/templates/agents-starter.md'),\n    path.join(packageRoot, 'dist/src/symbionts/templates/agents-starter.md'),\n  ];\n  for (const p of candidates) {\n    try {\n      const content = fs.readFileSync(p, 'utf-8');\n      fs.writeFileSync(agentsMdPath, content, 'utf-8');\n      return;\n    } catch { /* try next */ }\n  }\n}\n\nfunction ensureSymlink(linkPath: string, target: string): void {\n  try {\n    if (fs.readlinkSync(linkPath) === target) return;\n  } catch { /* does not exist or is not a symlink — proceed */ }\n  try { fs.rmSync(linkPath, { recursive: true, force: true }); } catch { /* ignore */ }\n  fs.symlinkSync(target, linkPath);\n}\n","import fs from 'node:fs';\nimport path from 'node:path';\nimport os from 'node:os';\nimport { OllamaBackend } from '../intelligence/ollama.js';\nimport { LmStudioBackend } from '../intelligence/lm-studio.js';\n\nimport { DaemonClient } from '../hooks/client.js';\nimport { initDatabase, closeDatabase, vaultDbPath } from '../db/client.js';\nimport { SymbiontInstaller } from '../symbionts/installer.js';\nimport type { SymbiontManifest } from '../symbionts/manifest-schema.js';\n\nexport { parseStringFlag, parseIntFlag } from '../logs/format.js';\n\n/**\n * Initialize the singleton database for direct CLI reads.\n * Used by CLI commands that only need reads (stats, search, session).\n * Does NOT require the daemon to be running — WAL mode allows concurrent reads.\n *\n * @returns a cleanup function that closes the database.\n */\nexport function initVaultDb(vaultDir: string): () => void {\n  initDatabase(vaultDbPath(vaultDir));\n  return closeDatabase;\n}\n\n/** Connect to the daemon, ensuring it's running. Exits on failure. */\nexport async function connectToDaemon(vaultDir: string): Promise<DaemonClient> {\n  const client = new DaemonClient(vaultDir);\n  const healthy = await client.ensureRunning();\n  if (!healthy) {\n    console.error('Failed to connect to daemon');\n    process.exit(1);\n  }\n  return client;\n}\n\n/** Load .env from cwd (not script location — that's the plugin install dir). */\nexport function loadEnv(): void {\n  const envPath = path.resolve(process.cwd(), '.env');\n  if (!fs.existsSync(envPath)) return;\n  for (const line of fs.readFileSync(envPath, 'utf-8').split('\\n')) {\n    const match = line.match(/^\\s*([^#=]+?)\\s*=\\s*(.*?)\\s*$/);\n    if (match && !process.env[match[1]]) {\n      process.env[match[1]] = match[2];\n    }\n  }\n}\n\nexport function isProcessAlive(pid: number): boolean {\n  try { process.kill(pid, 0); return true; } catch { return false; }\n}\n\n// --- Provider defaults (sourced from backend classes) ---\nexport const PROVIDER_DEFAULTS: Record<string, { base_url: string }> = {\n  ollama: { base_url: OllamaBackend.DEFAULT_BASE_URL },\n  'lm-studio': { base_url: LmStudioBackend.DEFAULT_BASE_URL },\n};\n\n\nexport const VAULT_GITIGNORE = `# SQLite database\nmyco.db*\nvectors.db*\n\n# Daemon state — per-machine, ephemeral\ndaemon.json\nbuffer/\nlogs/\n\n# Secrets — API keys for cloud providers\nsecrets.env\n\n# Machine ID\nmachine_id\n\n# Binary attachments — screenshots captured from transcripts\nattachments/\n\n# Team worker deployment — patched wrangler.toml + source copy\n.team-worker/\n`;\n\n/** Collapse an absolute home-dir path to its `~/` form for portable config storage. */\nexport function collapseHomePath(absPath: string): string {\n  const home = os.homedir();\n  if (absPath.startsWith(home + path.sep) || absPath === home) {\n    return '~' + absPath.slice(home.length);\n  }\n  return absPath;\n}\n\n/**\n * Run the SymbiontInstaller for each symbiont manifest and log results.\n * Shared between myco init and myco update.\n */\nexport function registerSymbionts(\n  manifests: SymbiontManifest[],\n  projectRoot: string,\n  packageRoot: string,\n  verb: 'Registered' | 'Updated',\n): number {\n  let count = 0;\n  for (const manifest of manifests) {\n    try {\n      const installer = new SymbiontInstaller(manifest, projectRoot, packageRoot);\n      const result = installer.install();\n\n      const installed = [\n        result.hooks && 'hooks',\n        result.mcp && 'MCP server',\n        result.skills && 'skills',\n        result.settings && 'settings',\n        result.instructions && 'instructions',\n      ].filter(Boolean);\n\n      if (installed.length > 0) {\n        console.log(`  \\u2713 ${verb} ${manifest.displayName}: ${installed.join(', ')}`);\n        count++;\n      } else {\n        console.log(`  \\u2013 ${manifest.displayName}: no registration targets configured`);\n      }\n    } catch (err) {\n      console.error(`  \\u2717 Failed to register ${manifest.displayName}: ${(err as Error).message}`);\n    }\n  }\n  return 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package/dist/chunk-WDLBFMGG.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/hooks/client.ts"],"sourcesContent":["import fs from 'node:fs';\nimport path from 'node:path';\nimport { spawn } from 'node:child_process';\nimport { DAEMON_CLIENT_TIMEOUT_MS, DAEMON_HEALTH_CHECK_TIMEOUT_MS, DAEMON_HEALTH_RETRY_DELAYS, DAEMON_STALE_GRACE_PERIOD_MS } from '../constants.js';\nimport { getPluginVersion } from '../version.js';\n\ninterface DaemonInfo {\n  pid: number;\n  port: number;\n}\n\n/**\n * Resolve the CLI entry point for spawning daemon processes.\n * Uses process.argv[1] so the daemon restarts from the same binary\n * (myco-dev vs global myco) that launched the current process.\n */\nexport function resolveCliEntryPath(): { execPath: string; cliEntry: string } {\n  return { execPath: process.execPath, cliEntry: process.argv[1] };\n}\n\ninterface HealthResponse {\n  myco: boolean;\n  version?: string;\n}\n\ninterface ClientResult {\n  ok: boolean;\n  data?: any;\n}\n\nexport class DaemonClient {\n  private vaultDir: string;\n\n  constructor(vaultDir: string) {\n    this.vaultDir = vaultDir;\n  }\n\n  async post(endpoint: string, body: unknown): Promise<ClientResult> {\n    try {\n      const info = this.readDaemonJson();\n      if (!info) return { ok: false };\n\n      const res = await fetch(`http://127.0.0.1:${info.port}${endpoint}`, {\n        method: 'POST',\n        headers: { 'Content-Type': 'application/json' },\n        body: JSON.stringify(body),\n        signal: AbortSignal.timeout(DAEMON_CLIENT_TIMEOUT_MS),\n      });\n\n      if (!res.ok) return { ok: false };\n      const data = await res.json();\n      return { ok: true, data };\n    } catch {\n      return { ok: false };\n    }\n  }\n\n  async get(endpoint: string): Promise<ClientResult> {\n    try {\n      const info = this.readDaemonJson();\n      if (!info) return { ok: false };\n\n      const res = await fetch(`http://127.0.0.1:${info.port}${endpoint}`, {\n        signal: AbortSignal.timeout(DAEMON_CLIENT_TIMEOUT_MS),\n      });\n\n      if (!res.ok) return { ok: false };\n      const data = await res.json();\n      return { ok: true, data };\n    } catch {\n      return { ok: false };\n    }\n  }\n\n  async delete(endpoint: string): Promise<ClientResult> {\n    try {\n      const info = this.readDaemonJson();\n      if (!info) return { ok: false };\n\n      const res = await fetch(`http://127.0.0.1:${info.port}${endpoint}`, {\n        method: 'DELETE',\n        signal: AbortSignal.timeout(DAEMON_CLIENT_TIMEOUT_MS),\n      });\n\n      if (!res.ok) return { ok: false };\n      const data = await res.json();\n      return { ok: true, data };\n    } catch {\n      return { ok: false };\n    }\n  }\n\n  async isHealthy(cachedInfo?: DaemonInfo | null): Promise<boolean> {\n    try {\n      const info = cachedInfo ?? this.readDaemonJson();\n      if (!info) return false;\n\n      const res = await fetch(`http://127.0.0.1:${info.port}/health`, {\n        signal: AbortSignal.timeout(DAEMON_HEALTH_CHECK_TIMEOUT_MS),\n      });\n      if (!res.ok) return false;\n      const data = await res.json() as HealthResponse;\n      return data.myco === true;\n    } catch {\n      return false;\n    }\n  }\n\n  /**\n   * Check if the daemon is running a stale version.\n   * Returns true if the daemon's version doesn't match the current plugin version.\n   * Skips the check if daemon.json was written recently (grace period) to prevent\n   * rapid restart loops from concurrent hooks or session reloads.\n   */\n  private async isStale(info: DaemonInfo): Promise<boolean> {\n    try {\n      const jsonPath = path.join(this.vaultDir, 'daemon.json');\n      const stat = fs.statSync(jsonPath);\n      if (Date.now() - stat.mtimeMs < DAEMON_STALE_GRACE_PERIOD_MS) {\n        return false;\n      }\n\n      const res = await fetch(`http://127.0.0.1:${info.port}/health`, {\n        signal: AbortSignal.timeout(DAEMON_HEALTH_CHECK_TIMEOUT_MS),\n      });\n      if (!res.ok) return false;\n      const data = await res.json() as HealthResponse;\n      if (!data.myco) return false;\n\n      // No version in response = old daemon that predates this check\n      if (!data.version) return true;\n\n      return data.version !== getPluginVersion();\n    } catch {\n      return false;\n    }\n  }\n\n  /**\n   * Kill the running daemon process.\n   */\n  private killDaemon(info: DaemonInfo | null): void {\n    try {\n      if (!info) return;\n      process.kill(info.pid, 'SIGTERM');\n    } catch { /* already dead */ }\n    try {\n      fs.unlinkSync(path.join(this.vaultDir, 'daemon.json'));\n    } catch { /* already gone */ }\n  }\n\n  /**\n   * Ensure the daemon is running. Spawns it if unhealthy.\n   * When checkStale is true (default), also restarts a healthy daemon if its\n   * version doesn't match the current plugin version. Use checkStale: false\n   * for hooks that just need the daemon alive (e.g., stop) without triggering\n   * version-driven restarts.\n   */\n  async ensureRunning(opts?: { checkStale?: boolean }): Promise<boolean> {\n    const checkStale = opts?.checkStale ?? true;\n    const info = this.readDaemonJson();\n\n    if (checkStale && info && await this.isStale(info)) {\n      this.killDaemon(info);\n      // Brief pause for port release\n      await new Promise((r) => setTimeout(r, 200));\n    } else if (await this.isHealthy(info)) {\n      return true;\n    }\n\n    this.spawnDaemon();\n\n    for (const delay of DAEMON_HEALTH_RETRY_DELAYS) {\n      await new Promise((r) => setTimeout(r, delay));\n      if (await this.isHealthy()) return true;\n    }\n    return false;\n  }\n\n  spawnDaemon(): void {\n    const { execPath, cliEntry } = resolveCliEntryPath();\n    const child = spawn(execPath, [cliEntry, 'daemon', '--vault', this.vaultDir], {\n      detached: true,\n      stdio: 'ignore',\n    });\n    child.unref();\n  }\n\n  private readDaemonJson(): DaemonInfo | null {\n    try {\n      const jsonPath = path.join(this.vaultDir, 'daemon.json');\n      const content = fs.readFileSync(jsonPath, 'utf-8');\n      const info = JSON.parse(content);\n      if (typeof info.port !== 'number') return null;\n      return info as DaemonInfo;\n    } catch {\n      return null;\n    }\n  }\n}\n"],"mappings":";;;;;;;;;;;;AAAA,OAAO,QAAQ;AACf,OAAO,UAAU;AACjB,SAAS,aAAa;AAcf,SAAS,sBAA8D;AAC5E,SAAO,EAAE,UAAU,QAAQ,UAAU,UAAU,QAAQ,KAAK,CAAC,EAAE;AACjE;AAYO,IAAM,eAAN,MAAmB;AAAA,EAChB;AAAA,EAER,YAAY,UAAkB;AAC5B,SAAK,WAAW;AAAA,EAClB;AAAA,EAEA,MAAM,KAAK,UAAkB,MAAsC;AACjE,QAAI;AACF,YAAM,OAAO,KAAK,eAAe;AACjC,UAAI,CAAC,KAAM,QAAO,EAAE,IAAI,MAAM;AAE9B,YAAM,MAAM,MAAM,MAAM,oBAAoB,KAAK,IAAI,GAAG,QAAQ,IAAI;AAAA,QAClE,QAAQ;AAAA,QACR,SAAS,EAAE,gBAAgB,mBAAmB;AAAA,QAC9C,MAAM,KAAK,UAAU,IAAI;AAAA,QACzB,QAAQ,YAAY,QAAQ,wBAAwB;AAAA,MACtD,CAAC;AAED,UAAI,CAAC,IAAI,GAAI,QAAO,EAAE,IAAI,MAAM;AAChC,YAAM,OAAO,MAAM,IAAI,KAAK;AAC5B,aAAO,EAAE,IAAI,MAAM,KAAK;AAAA,IAC1B,QAAQ;AACN,aAAO,EAAE,IAAI,MAAM;AAAA,IACrB;AAAA,EACF;AAAA,EAEA,MAAM,IAAI,UAAyC;AACjD,QAAI;AACF,YAAM,OAAO,KAAK,eAAe;AACjC,UAAI,CAAC,KAAM,QAAO,EAAE,IAAI,MAAM;AAE9B,YAAM,MAAM,MAAM,MAAM,oBAAoB,KAAK,IAAI,GAAG,QAAQ,IAAI;AAAA,QAClE,QAAQ,YAAY,QAAQ,wBAAwB;AAAA,MACtD,CAAC;AAED,UAAI,CAAC,IAAI,GAAI,QAAO,EAAE,IAAI,MAAM;AAChC,YAAM,OAAO,MAAM,IAAI,KAAK;AAC5B,aAAO,EAAE,IAAI,MAAM,KAAK;AAAA,IAC1B,QAAQ;AACN,aAAO,EAAE,IAAI,MAAM;AAAA,IACrB;AAAA,EACF;AAAA,EAEA,MAAM,OAAO,UAAyC;AACpD,QAAI;AACF,YAAM,OAAO,KAAK,eAAe;AACjC,UAAI,CAAC,KAAM,QAAO,EAAE,IAAI,MAAM;AAE9B,YAAM,MAAM,MAAM,MAAM,oBAAoB,KAAK,IAAI,GAAG,QAAQ,IAAI;AAAA,QAClE,QAAQ;AAAA,QACR,QAAQ,YAAY,QAAQ,wBAAwB;AAAA,MACtD,CAAC;AAED,UAAI,CAAC,IAAI,GAAI,QAAO,EAAE,IAAI,MAAM;AAChC,YAAM,OAAO,MAAM,IAAI,KAAK;AAC5B,aAAO,EAAE,IAAI,MAAM,KAAK;AAAA,IAC1B,QAAQ;AACN,aAAO,EAAE,IAAI,MAAM;AAAA,IACrB;AAAA,EACF;AAAA,EAEA,MAAM,UAAU,YAAkD;AAChE,QAAI;AACF,YAAM,OAAO,cAAc,KAAK,eAAe;AAC/C,UAAI,CAAC,KAAM,QAAO;AAElB,YAAM,MAAM,MAAM,MAAM,oBAAoB,KAAK,IAAI,WAAW;AAAA,QAC9D,QAAQ,YAAY,QAAQ,8BAA8B;AAAA,MAC5D,CAAC;AACD,UAAI,CAAC,IAAI,GAAI,QAAO;AACpB,YAAM,OAAO,MAAM,IAAI,KAAK;AAC5B,aAAO,KAAK,SAAS;AAAA,IACvB,QAAQ;AACN,aAAO;AAAA,IACT;AAAA,EACF;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA,EAQA,MAAc,QAAQ,MAAoC;AACxD,QAAI;AACF,YAAM,WAAW,KAAK,KAAK,KAAK,UAAU,aAAa;AACvD,YAAM,OAAO,GAAG,SAAS,QAAQ;AACjC,UAAI,KAAK,IAAI,IAAI,KAAK,UAAU,8BAA8B;AAC5D,eAAO;AAAA,MACT;AAEA,YAAM,MAAM,MAAM,MAAM,oBAAoB,KAAK,IAAI,WAAW;AAAA,QAC9D,QAAQ,YAAY,QAAQ,8BAA8B;AAAA,MAC5D,CAAC;AACD,UAAI,CAAC,IAAI,GAAI,QAAO;AACpB,YAAM,OAAO,MAAM,IAAI,KAAK;AAC5B,UAAI,CAAC,KAAK,KAAM,QAAO;AAGvB,UAAI,CAAC,KAAK,QAAS,QAAO;AAE1B,aAAO,KAAK,YAAY,iBAAiB;AAAA,IAC3C,QAAQ;AACN,aAAO;AAAA,IACT;AAAA,EACF;AAAA;AAAA;AAAA;AAAA,EAKQ,WAAW,MAA+B;AAChD,QAAI;AACF,UAAI,CAAC,KAAM;AACX,cAAQ,KAAK,KAAK,KAAK,SAAS;AAAA,IAClC,QAAQ;AAAA,IAAqB;AAC7B,QAAI;AACF,SAAG,WAAW,KAAK,KAAK,KAAK,UAAU,aAAa,CAAC;AAAA,IACvD,QAAQ;AAAA,IAAqB;AAAA,EAC/B;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA,EASA,MAAM,cAAc,MAAmD;AACrE,UAAM,aAAa,MAAM,cAAc;AACvC,UAAM,OAAO,KAAK,eAAe;AAEjC,QAAI,cAAc,QAAQ,MAAM,KAAK,QAAQ,IAAI,GAAG;AAClD,WAAK,WAAW,IAAI;AAEpB,YAAM,IAAI,QAAQ,CAAC,MAAM,WAAW,GAAG,GAAG,CAAC;AAAA,IAC7C,WAAW,MAAM,KAAK,UAAU,IAAI,GAAG;AACrC,aAAO;AAAA,IACT;AAEA,SAAK,YAAY;AAEjB,eAAW,SAAS,4BAA4B;AAC9C,YAAM,IAAI,QAAQ,CAAC,MAAM,WAAW,GAAG,KAAK,CAAC;AAC7C,UAAI,MAAM,KAAK,UAAU,EAAG,QAAO;AAAA,IACrC;AACA,WAAO;AAAA,EACT;AAAA,EAEA,cAAoB;AAClB,UAAM,EAAE,UAAU,SAAS,IAAI,oBAAoB;AACnD,UAAM,QAAQ,MAAM,UAAU,CAAC,UAAU,UAAU,WAAW,KAAK,QAAQ,GAAG;AAAA,MAC5E,UAAU;AAAA,MACV,OAAO;AAAA,IACT,CAAC;AACD,UAAM,MAAM;AAAA,EACd;AAAA,EAEQ,iBAAoC;AAC1C,QAAI;AACF,YAAM,WAAW,KAAK,KAAK,KAAK,UAAU,aAAa;AACvD,YAAM,UAAU,GAAG,aAAa,UAAU,OAAO;AACjD,YAAM,OAAO,KAAK,MAAM,OAAO;AAC/B,UAAI,OAAO,KAAK,SAAS,SAAU,QAAO;AAC1C,aAAO;AAAA,IACT,QAAQ;AACN,aAAO;AAAA,IACT;AAAA,EACF;AACF;","names":[]}