@goondocks/myco 0.12.2 → 0.12.4

package/dist/src/symbionts/templates/cursor/hooks.json

@@ -0,0 +1,65 @@
+{
+  "sessionStart": [
+    {
+      "command": "node .agents/myco-hook.cjs hook session-start",
+      "type": "command",
+      "timeout": 10
+    }
+  ],
+  "beforeSubmitPrompt": [
+    {
+      "command": "node .agents/myco-hook.cjs hook user-prompt-submit",
+      "type": "command",
+      "timeout": 5
+    }
+  ],
+  "postToolUse": [
+    {
+      "command": "node .agents/myco-hook.cjs hook post-tool-use",
+      "type": "command",
+      "timeout": 5
+    }
+  ],
+  "postToolUseFailure": [
+    {
+      "command": "node .agents/myco-hook.cjs hook post-tool-use-failure",
+      "type": "command",
+      "timeout": 5
+    }
+  ],
+  "stop": [
+    {
+      "command": "node .agents/myco-hook.cjs hook stop",
+      "type": "command",
+      "timeout": 30
+    }
+  ],
+  "sessionEnd": [
+    {
+      "command": "node .agents/myco-hook.cjs hook session-end",
+      "type": "command",
+      "timeout": 10
+    }
+  ],
+  "subagentStart": [
+    {
+      "command": "node .agents/myco-hook.cjs hook subagent-start",
+      "type": "command",
+      "timeout": 5
+    }
+  ],
+  "subagentStop": [
+    {
+      "command": "node .agents/myco-hook.cjs hook subagent-stop",
+      "type": "command",
+      "timeout": 10
+    }
+  ],
+  "preCompact": [
+    {
+      "command": "node .agents/myco-hook.cjs hook pre-compact",
+      "type": "command",
+      "timeout": 5
+    }
+  ]
+}

package/dist/src/symbionts/templates/gemini/hooks.json

@@ -5,7 +5,7 @@
         {
           "name": "myco-session-start",
           "type": "command",
-          "command": "myco-run hook session-start",
+          "command": "node .agents/myco-hook.cjs hook session-start",
           "timeout": 10000
         }
       ]
@@ -17,7 +17,7 @@
         {
           "name": "myco-user-prompt-submit",
           "type": "command",
-          "command": "myco-run hook user-prompt-submit",
+          "command": "node .agents/myco-hook.cjs hook user-prompt-submit",
           "timeout": 5000
         }
       ]
@@ -29,7 +29,7 @@
         {
           "name": "myco-post-tool-use",
           "type": "command",
-          "command": "myco-run hook post-tool-use",
+          "command": "node .agents/myco-hook.cjs hook post-tool-use",
           "timeout": 5000
         }
       ]
@@ -41,7 +41,7 @@
         {
           "name": "myco-stop",
           "type": "command",
-          "command": "myco-run hook stop",
+          "command": "node .agents/myco-hook.cjs hook stop",
           "timeout": 30000
         }
       ]
@@ -53,7 +53,7 @@
         {
           "name": "myco-session-end",
           "type": "command",
-          "command": "myco-run hook session-end",
+          "command": "node .agents/myco-hook.cjs hook session-end",
           "timeout": 10000
         }
       ]
@@ -65,7 +65,7 @@
         {
           "name": "myco-pre-compact",
           "type": "command",
-          "command": "myco-run hook pre-compact",
+          "command": "node .agents/myco-hook.cjs hook pre-compact",
           "timeout": 5000
         }
       ]

package/dist/src/symbionts/templates/vscode-copilot/hooks.json

@@ -4,7 +4,7 @@
       "hooks": [
         {
           "type": "command",
-          "command": "myco-run hook session-start",
+          "command": "node .agents/myco-hook.cjs hook session-start",
           "timeout": 10
         }
       ]
@@ -15,7 +15,7 @@
       "hooks": [
         {
           "type": "command",
-          "command": "myco-run hook user-prompt-submit",
+          "command": "node .agents/myco-hook.cjs hook user-prompt-submit",
           "timeout": 5
         }
       ]
@@ -26,7 +26,7 @@
       "hooks": [
         {
           "type": "command",
-          "command": "myco-run hook post-tool-use",
+          "command": "node .agents/myco-hook.cjs hook post-tool-use",
           "timeout": 5
         }
       ]
@@ -37,7 +37,7 @@
       "hooks": [
         {
           "type": "command",
-          "command": "myco-run hook pre-compact",
+          "command": "node .agents/myco-hook.cjs hook pre-compact",
           "timeout": 5
         }
       ]
@@ -48,7 +48,7 @@
       "hooks": [
         {
           "type": "command",
-          "command": "myco-run hook subagent-start",
+          "command": "node .agents/myco-hook.cjs hook subagent-start",
           "timeout": 5
         }
       ]
@@ -59,7 +59,7 @@
       "hooks": [
         {
           "type": "command",
-          "command": "myco-run hook subagent-stop",
+          "command": "node .agents/myco-hook.cjs hook subagent-stop",
           "timeout": 10
         }
       ]
@@ -70,7 +70,7 @@
       "hooks": [
         {
           "type": "command",
-          "command": "myco-run hook stop",
+          "command": "node .agents/myco-hook.cjs hook stop",
           "timeout": 30
         }
       ]

package/dist/src/symbionts/templates/windsurf/hooks.json

@@ -1,22 +1,22 @@
 {
   "pre_user_prompt": [
     {
-      "command": "myco-run hook user-prompt-submit"
+      "command": "node .agents/myco-hook.cjs hook user-prompt-submit"
     }
   ],
   "post_run_command": [
     {
-      "command": "myco-run hook post-tool-use"
+      "command": "node .agents/myco-hook.cjs hook post-tool-use"
     }
   ],
   "post_write_code": [
     {
-      "command": "myco-run hook post-tool-use"
+      "command": "node .agents/myco-hook.cjs hook post-tool-use"
     }
   ],
   "post_cascade_response": [
     {
-      "command": "myco-run hook stop"
+      "command": "node .agents/myco-hook.cjs hook stop"
     }
   ]
 }

package/dist/{stats-DPXRT7BQ.js → stats-R4W3JMYT.js}

@@ -1,18 +1,18 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   gatherStats
-} from "./chunk-4CKDWUCX.js";
+} from "./chunk-AYVQ6BOJ.js";
 import {
   initVaultDb
-} from "./chunk-OIQJF7UV.js";
+} from "./chunk-YLHSYDGW.js";
 import "./chunk-SAKJMNSR.js";
 import "./chunk-LUQBT2Y4.js";
 import "./chunk-MAZOVVDU.js";
 import "./chunk-MYX5NCRH.js";
-import "./chunk-UK2WZET6.js";
+import "./chunk-7CX2TO2C.js";
 import "./chunk-PIRWYDOH.js";
 import "./chunk-S6I62FAH.js";
-import "./chunk-ABZJLB6K.js";
+import "./chunk-R4DTJ6EO.js";
 import "./chunk-LPUQPDC2.js";
 import "./chunk-D7TYRPRM.js";
 import "./chunk-E4VLWIJC.js";
@@ -91,4 +91,4 @@ function formatUptime(seconds) {
 export {
   run
 };
-//# sourceMappingURL=stats-DPXRT7BQ.js.map
+//# sourceMappingURL=stats-R4W3JMYT.js.map

package/dist/{stop-RZNL4BGV.js → stop-OX4Q5SHG.js}

@@ -5,10 +5,10 @@ import {
 } from "./chunk-RR75ZKEV.js";
 import {
   DaemonClient
-} from "./chunk-UK2WZET6.js";
+} from "./chunk-7CX2TO2C.js";
 import "./chunk-PIRWYDOH.js";
 import "./chunk-S6I62FAH.js";
-import "./chunk-ABZJLB6K.js";
+import "./chunk-R4DTJ6EO.js";
 import "./chunk-QFMBZ72S.js";
 import "./chunk-LPUQPDC2.js";
 import "./chunk-D7TYRPRM.js";
@@ -45,4 +45,4 @@ async function main() {
 export {
   main
 };
-//# sourceMappingURL=stop-RZNL4BGV.js.map
+//# sourceMappingURL=stop-OX4Q5SHG.js.map

package/dist/{stop-failure-C7IUKTIW.js → stop-failure-52SR2Z5J.js}

@@ -1,13 +1,13 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   sendEvent
-} from "./chunk-B7CPVELQ.js";
+} from "./chunk-NMKFNJTU.js";
 import "./chunk-V7XG6V6C.js";
 import "./chunk-RR75ZKEV.js";
-import "./chunk-UK2WZET6.js";
+import "./chunk-7CX2TO2C.js";
 import "./chunk-PIRWYDOH.js";
 import "./chunk-S6I62FAH.js";
-import "./chunk-ABZJLB6K.js";
+import "./chunk-R4DTJ6EO.js";
 import "./chunk-QFMBZ72S.js";
 import "./chunk-LPUQPDC2.js";
 import "./chunk-D7TYRPRM.js";
@@ -27,4 +27,4 @@ async function main() {
 export {
   main
 };
-//# sourceMappingURL=stop-failure-C7IUKTIW.js.map
+//# sourceMappingURL=stop-failure-52SR2Z5J.js.map

package/dist/{subagent-start-2MVHKQ5K.js → subagent-start-AHL7TMJ4.js}

@@ -1,13 +1,13 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   sendEvent
-} from "./chunk-B7CPVELQ.js";
+} from "./chunk-NMKFNJTU.js";
 import "./chunk-V7XG6V6C.js";
 import "./chunk-RR75ZKEV.js";
-import "./chunk-UK2WZET6.js";
+import "./chunk-7CX2TO2C.js";
 import "./chunk-PIRWYDOH.js";
 import "./chunk-S6I62FAH.js";
-import "./chunk-ABZJLB6K.js";
+import "./chunk-R4DTJ6EO.js";
 import "./chunk-QFMBZ72S.js";
 import "./chunk-LPUQPDC2.js";
 import "./chunk-D7TYRPRM.js";
@@ -27,4 +27,4 @@ async function main() {
 export {
   main
 };
-//# sourceMappingURL=subagent-start-2MVHKQ5K.js.map
+//# sourceMappingURL=subagent-start-AHL7TMJ4.js.map

package/dist/{subagent-stop-YVWHRVDZ.js → subagent-stop-FJ5K76US.js}

@@ -1,13 +1,13 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   sendEvent
-} from "./chunk-B7CPVELQ.js";
+} from "./chunk-NMKFNJTU.js";
 import "./chunk-V7XG6V6C.js";
 import "./chunk-RR75ZKEV.js";
-import "./chunk-UK2WZET6.js";
+import "./chunk-7CX2TO2C.js";
 import "./chunk-PIRWYDOH.js";
 import "./chunk-S6I62FAH.js";
-import "./chunk-ABZJLB6K.js";
+import "./chunk-R4DTJ6EO.js";
 import "./chunk-QFMBZ72S.js";
 import "./chunk-LPUQPDC2.js";
 import "./chunk-D7TYRPRM.js";
@@ -29,4 +29,4 @@ async function main() {
 export {
   main
 };
-//# sourceMappingURL=subagent-stop-YVWHRVDZ.js.map
+//# sourceMappingURL=subagent-stop-FJ5K76US.js.map

package/dist/{task-completed-QFPSXH23.js → task-completed-IMICZZLE.js}

@@ -1,13 +1,13 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   sendEvent
-} from "./chunk-B7CPVELQ.js";
+} from "./chunk-NMKFNJTU.js";
 import "./chunk-V7XG6V6C.js";
 import "./chunk-RR75ZKEV.js";
-import "./chunk-UK2WZET6.js";
+import "./chunk-7CX2TO2C.js";
 import "./chunk-PIRWYDOH.js";
 import "./chunk-S6I62FAH.js";
-import "./chunk-ABZJLB6K.js";
+import "./chunk-R4DTJ6EO.js";
 import "./chunk-QFMBZ72S.js";
 import "./chunk-LPUQPDC2.js";
 import "./chunk-D7TYRPRM.js";
@@ -28,4 +28,4 @@ async function main() {
 export {
   main
 };
-//# sourceMappingURL=task-completed-QFPSXH23.js.map
+//# sourceMappingURL=task-completed-IMICZZLE.js.map

package/dist/{update-Z25DYA32.js → update-3QVZ2ATU.js}

@@ -2,14 +2,14 @@ import { createRequire as __cr } from 'node:module'; const require = __cr(import
 import {
   VAULT_GITIGNORE,
   registerSymbionts
-} from "./chunk-OIQJF7UV.js";
+} from "./chunk-YLHSYDGW.js";
 import "./chunk-SAKJMNSR.js";
 import "./chunk-LUQBT2Y4.js";
 import "./chunk-MYX5NCRH.js";
-import "./chunk-UK2WZET6.js";
+import "./chunk-7CX2TO2C.js";
 import "./chunk-PIRWYDOH.js";
 import "./chunk-S6I62FAH.js";
-import "./chunk-ABZJLB6K.js";
+import "./chunk-R4DTJ6EO.js";
 import {
   loadManifests,
   resolvePackageRoot
@@ -72,4 +72,4 @@ async function run(args) {
 export {
   run
 };
-//# sourceMappingURL=update-Z25DYA32.js.map
+//# sourceMappingURL=update-3QVZ2ATU.js.map

package/dist/{user-prompt-submit-KNB27MOC.js → user-prompt-submit-OO7IDFAU.js}

@@ -8,10 +8,10 @@ import {
 } from "./chunk-RR75ZKEV.js";
 import {
   DaemonClient
-} from "./chunk-UK2WZET6.js";
+} from "./chunk-7CX2TO2C.js";
 import "./chunk-PIRWYDOH.js";
 import "./chunk-S6I62FAH.js";
-import "./chunk-ABZJLB6K.js";
+import "./chunk-R4DTJ6EO.js";
 import "./chunk-QFMBZ72S.js";
 import "./chunk-LPUQPDC2.js";
 import "./chunk-D7TYRPRM.js";
@@ -63,4 +63,4 @@ ${sessionLine}` : sessionLine;
 export {
   main
 };
-//# sourceMappingURL=user-prompt-submit-KNB27MOC.js.map
+//# sourceMappingURL=user-prompt-submit-OO7IDFAU.js.map

package/dist/{version-G3HCB5X5.js → version-DX2FQR6H.js}

@@ -1,10 +1,10 @@
 import { createRequire as __cr } from 'node:module'; const require = __cr(import.meta.url);
 import {
   getPluginVersion
-} from "./chunk-ABZJLB6K.js";
+} from "./chunk-R4DTJ6EO.js";
 import "./chunk-LPUQPDC2.js";
 import "./chunk-PZUWP5VK.js";
 export {
   getPluginVersion
 };
-//# sourceMappingURL=version-G3HCB5X5.js.map
+//# sourceMappingURL=version-DX2FQR6H.js.map

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@goondocks/myco",
-  "version": "0.12.2",
+  "version": "0.12.4",
   "description": "Collective agent intelligence — Claude Code plugin",
   "type": "module",
   "main": "dist/index.js",

package/dist/chunk-OIQJF7UV.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/symbionts/installer.ts","../src/cli/shared.ts"],"sourcesContent":["import type { SymbiontManifest } from './manifest-schema.js';\nimport fs from 'node:fs';\nimport path from 'node:path';\n\n/** Prefix used to identify Myco-owned hooks in settings files. */\nconst MYCO_HOOK_COMMAND_PREFIX = 'myco-run';\n\n/**\n * Check if a hook group is Myco-owned.\n * Handles both nested format (Claude Code, Codex, etc.) and flat format (Windsurf).\n *\n * Nested: { hooks: [{ command: \"myco-run ...\" }] }\n * Flat:   { command: \"myco-run ...\" }\n */\nfunction isMycoHookGroup(group: Record<string, unknown>): boolean {\n  // Nested format: { hooks: [{ command: \"myco-run ...\" }] }\n  if (Array.isArray(group.hooks) && group.hooks.some((h: { command?: string }) => h.command?.startsWith(MYCO_HOOK_COMMAND_PREFIX))) return true;\n  // Flat format: { command: \"myco-run ...\" }\n  if (typeof group.command === 'string' && group.command.startsWith(MYCO_HOOK_COMMAND_PREFIX)) return true;\n  return false;\n}\n\n/** Comment header for Myco entries in .gitignore. */\nconst GITIGNORE_SKILLS_COMMENT = '# Myco skill symlinks (machine-specific)';\n\n/** Subdirectory within the package where symbiont templates live. */\nconst TEMPLATES_SUBDIR = 'src/symbionts/templates';\n\n/** Subdirectory within the package where skills live. */\nconst SKILLS_SUBDIR = 'skills';\n\n/** Canonical cross-agent skills directory. */\nconst CANONICAL_SKILLS_DIR = '.agents/skills';\n\n/** MCP server name used by Myco in all symbiont configurations. */\nexport const MYCO_MCP_SERVER_NAME = 'myco';\n\n/** Marker text used to identify unmodified instruction stubs. */\nconst INSTRUCTIONS_STUB_MARKER = 'Edit AGENTS.md, not this file';\n\n/** Start/end markers for the reference block prepended to existing instruction files. */\nconst INSTRUCTIONS_REF_START = '<!-- myco:agents-ref:start -->';\nconst INSTRUCTIONS_REF_END = '<!-- myco:agents-ref:end -->';\n\n/** Reference block prepended to existing instruction files. */\nconst INSTRUCTIONS_REF_BLOCK = `${INSTRUCTIONS_REF_START}\n> **Project intelligence:** This project uses [Myco](https://myco.sh). The canonical project rules are in [\\`AGENTS.md\\`](AGENTS.md) — read and follow it alongside this file.\n${INSTRUCTIONS_REF_END}\n\n`;\n\nexport interface InstallResult {\n  hooks: boolean;\n  mcp: boolean;\n  skills: boolean;\n  settings: boolean;\n  instructions: boolean;\n}\n\nexport class SymbiontInstaller {\n  constructor(\n    private manifest: SymbiontManifest,\n    private projectRoot: string,\n    private packageRoot: string,\n  ) {}\n\n  /** Load a JSON template file for this symbiont. Returns null if not found. */\n  loadTemplate(name: string): Record<string, unknown> | null {\n    // Check both source layout and dist layout\n    const candidates = [\n      path.join(this.packageRoot, TEMPLATES_SUBDIR, this.manifest.name, `${name}.json`),\n      // tsup preserves the src/ prefix under dist/, so the same subdir works in both layouts\n      path.join(this.packageRoot, 'dist', TEMPLATES_SUBDIR, this.manifest.name, `${name}.json`),\n    ];\n    for (const filePath of candidates) {\n      try {\n        return JSON.parse(fs.readFileSync(filePath, 'utf-8'));\n      } catch { /* not found or malformed — try next */ }\n    }\n    return null;\n  }\n\n  /** Run all registration steps. */\n  install(): InstallResult {\n    const reg = this.manifest.registration;\n    const result = this.shouldBatchJsonTargets(reg)\n      ? this.installBatchedJson(reg!)\n      : {\n          hooks: this.installHooks(),\n          mcp: this.installMcp(),\n          skills: this.installSkills(),\n          settings: this.installSettings(),\n          instructions: this.installInstructions(),\n        };\n    this.updateGitignore();\n    return result;\n  }\n\n  /**\n   * Check if ALL non-null JSON targets share the same file (e.g., Gemini).\n   * Only batches when every target resolves to one path — partial overlaps\n   * (e.g., Claude Code: hooks+settings share but MCP is separate) use normal path.\n   */\n  private shouldBatchJsonTargets(reg: typeof this.manifest.registration): boolean {\n    if (!reg) return false;\n    const mcpFormat = reg.mcpFormat ?? 'json';\n    if (mcpFormat !== 'json') return false;\n    const targets = [reg.hooksTarget, reg.mcpTarget, reg.settingsTarget].filter(Boolean);\n    return targets.length > 1 && new Set(targets).size === 1;\n  }\n\n  /**\n   * Batched install for agents where hooks, MCP, and settings share one JSON file.\n   * Single read → apply all transforms in memory → single write.\n   */\n  private installBatchedJson(reg: NonNullable<typeof this.manifest.registration>): InstallResult {\n    const targetPath = path.join(this.projectRoot, reg.hooksTarget ?? reg.mcpTarget ?? reg.settingsTarget!);\n    let data = readJsonFile(targetPath);\n    let hooks = false, mcp = false, settings = false;\n\n    // Apply hooks transform\n    const hooksTemplate = reg.hooksTarget ? this.loadTemplate('hooks') : null;\n    if (hooksTemplate) {\n      const existingHooks = (data.hooks ?? {}) as Record<string, unknown[]>;\n      const mergedHooks: Record<string, unknown[]> = {};\n      for (const [event, groups] of Object.entries(existingHooks)) {\n        const nonMyco = (groups as Array<Record<string, unknown>>).filter((g) => !isMycoHookGroup(g));\n        if (nonMyco.length > 0) mergedHooks[event] = nonMyco;\n      }\n      for (const [event, groups] of Object.entries(hooksTemplate)) {\n        mergedHooks[event] = [...(mergedHooks[event] ?? []), ...(groups as unknown[])];\n      }\n      data.hooks = mergedHooks;\n      hooks = true;\n    }\n\n    // Apply MCP transform\n    const mcpTemplate = reg.mcpTarget ? this.loadTemplate('mcp') : null;\n    if (mcpTemplate) {\n      const servers = (data.mcpServers ?? {}) as Record<string, unknown>;\n      for (const [name, def] of Object.entries(mcpTemplate)) {\n        servers[name] = def;\n      }\n      data.mcpServers = servers;\n      mcp = true;\n    }\n\n    // Apply settings transform\n    const settingsTemplate = reg.settingsTarget ? this.loadTemplate('settings') : null;\n    if (settingsTemplate) {\n      data = deepMergeSettings(data, settingsTemplate);\n      settings = true;\n    }\n\n    writeJsonFile(targetPath, data);\n\n    return {\n      hooks,\n      mcp,\n      skills: this.installSkills(),\n      settings,\n      instructions: this.installInstructions(),\n    };\n  }\n\n  /** Remove all Myco registration from this symbiont's project files. */\n  uninstall(): InstallResult {\n    const reg = this.manifest.registration;\n    const result = this.shouldBatchJsonTargets(reg)\n      ? this.uninstallBatchedJson(reg!)\n      : {\n          hooks: this.uninstallHooks(),\n          mcp: this.uninstallMcp(),\n          skills: this.uninstallSkills(),\n          settings: this.uninstallSettings(),\n          instructions: this.uninstallInstructions(),\n        };\n    this.cleanGitignore();\n    return result;\n  }\n\n  /**\n   * Batched uninstall for agents where hooks, MCP, and settings share one JSON file.\n   */\n  private uninstallBatchedJson(reg: NonNullable<typeof this.manifest.registration>): InstallResult {\n    const targetPath = path.join(this.projectRoot, reg.hooksTarget ?? reg.mcpTarget ?? reg.settingsTarget!);\n    const data = readJsonFile(targetPath);\n    if (Object.keys(data).length === 0) {\n      return { hooks: false, mcp: false, skills: this.uninstallSkills(), settings: false, instructions: this.uninstallInstructions() };\n    }\n\n    let hooks = false, mcp = false, settings = false;\n\n    // Remove hooks\n    if (reg.hooksTarget) {\n      const existingHooks = (data.hooks ?? {}) as Record<string, unknown[]>;\n      if (Object.keys(existingHooks).length > 0) {\n        const cleaned: Record<string, unknown[]> = {};\n        for (const [event, groups] of Object.entries(existingHooks)) {\n          const nonMyco = (groups as Array<Record<string, unknown>>).filter((g) => !isMycoHookGroup(g));\n          if (nonMyco.length > 0) cleaned[event] = nonMyco;\n        }\n        if (Object.keys(cleaned).length === 0) {\n          delete data.hooks;\n        } else {\n          data.hooks = cleaned;\n        }\n        hooks = true;\n      }\n    }\n\n    // Remove MCP\n    if (reg.mcpTarget) {\n      const servers = (data.mcpServers ?? {}) as Record<string, unknown>;\n      if (servers[MYCO_MCP_SERVER_NAME]) {\n        delete servers[MYCO_MCP_SERVER_NAME];\n        if (Object.keys(servers).length === 0) delete data.mcpServers;\n        else data.mcpServers = servers;\n        mcp = true;\n      }\n    }\n\n    // Remove settings\n    const settingsTemplate = reg.settingsTarget ? this.loadTemplate('settings') : null;\n    if (settingsTemplate) {\n      settings = deepRemoveSettings(data, settingsTemplate);\n    }\n\n    writeOrDeleteJsonFile(targetPath, data);\n\n    return { hooks, mcp, skills: this.uninstallSkills(), settings, instructions: this.uninstallInstructions() };\n  }\n\n  /**\n   * Ensure the instruction file references AGENTS.md.\n   * - File doesn't exist: write the full stub template.\n   * - File exists without reference: prepend a reference block.\n   * - File already has reference: skip (idempotent).\n   *\n   * Also ensures AGENTS.md exists — creates a starter if missing.\n   */\n  installInstructions(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.instructionsFile) return false;\n\n    // Ensure AGENTS.md exists before creating stubs that reference it\n    ensureAgentsMd(this.projectRoot, this.packageRoot);\n\n    const targetPath = path.join(this.projectRoot, reg.instructionsFile);\n\n    // Check if file already exists\n    let existing: string | null = null;\n    try { existing = fs.readFileSync(targetPath, 'utf-8'); } catch { /* doesn't exist */ }\n\n    if (existing !== null) {\n      // File exists — check if it already has our reference\n      if (existing.includes(INSTRUCTIONS_REF_START) || existing.includes(INSTRUCTIONS_STUB_MARKER)) {\n        return false; // Already has reference — idempotent\n      }\n      // Prepend reference block to existing content\n      fs.writeFileSync(targetPath, INSTRUCTIONS_REF_BLOCK + existing, 'utf-8');\n      return true;\n    }\n\n    // File doesn't exist — write the full stub template\n    const templateCandidates = [\n      path.join(this.packageRoot, 'src/symbionts/templates/instructions-stub.md'),\n      path.join(this.packageRoot, 'dist/src/symbionts/templates/instructions-stub.md'),\n    ];\n    let stub: string | null = null;\n    for (const p of templateCandidates) {\n      try { stub = fs.readFileSync(p, 'utf-8'); break; } catch { /* try next */ }\n    }\n    if (!stub) return false;\n\n    stub = stub.replace('{agentDisplayName}', this.manifest.displayName);\n    fs.mkdirSync(path.dirname(targetPath), { recursive: true });\n    fs.writeFileSync(targetPath, stub, 'utf-8');\n    return true;\n  }\n\n  /**\n   * Remove Myco's instruction file reference.\n   * - If file is the full stub (only Myco content): delete it.\n   * - If file has user content + prepended reference: remove just the reference block.\n   */\n  uninstallInstructions(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.instructionsFile) return false;\n\n    const targetPath = path.join(this.projectRoot, reg.instructionsFile);\n    let content: string;\n    try { content = fs.readFileSync(targetPath, 'utf-8'); } catch { return false; }\n\n    // Case 1: Full stub — delete the file entirely\n    if (content.includes(INSTRUCTIONS_STUB_MARKER)) {\n      fs.unlinkSync(targetPath);\n      return true;\n    }\n\n    // Case 2: Prepended reference block — remove just the block\n    if (content.includes(INSTRUCTIONS_REF_START)) {\n      const startIdx = content.indexOf(INSTRUCTIONS_REF_START);\n      const endIdx = content.indexOf(INSTRUCTIONS_REF_END);\n      if (endIdx > startIdx) {\n        // Remove from start marker through end marker + trailing whitespace\n        const afterEnd = endIdx + INSTRUCTIONS_REF_END.length;\n        const cleaned = (content.slice(0, startIdx) + content.slice(afterEnd)).replace(/^\\n+/, '');\n        fs.writeFileSync(targetPath, cleaned, 'utf-8');\n        return true;\n      }\n    }\n\n    return false;\n  }\n\n  /** List skill directory names from the package root. Returns empty array if not found. */\n  private listSkillDirs(): string[] {\n    try {\n      return fs.readdirSync(path.join(this.packageRoot, SKILLS_SUBDIR), { withFileTypes: true })\n        .filter((d) => d.isDirectory())\n        .map((d) => d.name);\n    } catch { return []; }\n  }\n\n  /** Add skill symlink paths to project .gitignore. */\n  private updateGitignore(): void {\n    const reg = this.manifest.registration;\n    if (!reg?.skillsTarget) return;\n\n    const skillNames = this.listSkillDirs();\n\n    const entries = [\n      `${CANONICAL_SKILLS_DIR}/`,\n      ...(reg.skillsTarget !== CANONICAL_SKILLS_DIR\n        ? skillNames.map((name) => `${reg.skillsTarget}/${name}`)\n        : []\n      ),\n    ];\n\n    const gitignorePath = path.join(this.projectRoot, '.gitignore');\n    let existing = '';\n    try { existing = fs.readFileSync(gitignorePath, 'utf-8'); } catch { /* doesn't exist yet */ }\n\n    const newEntries = entries.filter((e) => !existing.includes(e));\n    if (newEntries.length === 0) return;\n\n    const separator = existing.endsWith('\\n') || existing === '' ? '' : '\\n';\n    const block = `${separator}\\n${GITIGNORE_SKILLS_COMMENT}\\n${newEntries.join('\\n')}\\n`;\n    fs.writeFileSync(gitignorePath, existing + block, 'utf-8');\n  }\n\n  /**\n   * Merge hooks template into the target settings file.\n   * Replaces all Myco-owned hook groups; preserves non-Myco hooks.\n   */\n  installHooks(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.hooksTarget) return false;\n\n    const template = this.loadTemplate('hooks');\n    if (!template) return false;\n\n    const targetPath = path.join(this.projectRoot, reg.hooksTarget);\n    const settings = readJsonFile(targetPath);\n    const existingHooks = (settings.hooks ?? {}) as Record<string, unknown[]>;\n\n    // Build merged hooks: for each event, keep non-Myco groups + add template groups\n    const mergedHooks: Record<string, unknown[]> = {};\n\n    // Preserve non-Myco hooks from existing config\n    for (const [event, groups] of Object.entries(existingHooks)) {\n      const nonMycoGroups = (groups as Array<Record<string, unknown>>).filter(\n        (group) => !isMycoHookGroup(group),\n      );\n      if (nonMycoGroups.length > 0) {\n        mergedHooks[event] = nonMycoGroups;\n      }\n    }\n\n    // Add template hooks\n    for (const [event, groups] of Object.entries(template)) {\n      mergedHooks[event] = [...(mergedHooks[event] ?? []), ...(groups as unknown[])];\n    }\n\n    settings.hooks = mergedHooks;\n    writeJsonFile(targetPath, settings);\n    return true;\n  }\n\n  /**\n   * Merge MCP server template into the target config file.\n   * Replaces the `myco` server entry; preserves other servers.\n   */\n  installMcp(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.mcpTarget) return false;\n\n    const template = this.loadTemplate('mcp');\n    if (!template) return false;\n\n    const targetPath = path.join(this.projectRoot, reg.mcpTarget);\n    const mcpFormat = reg.mcpFormat ?? 'json';\n\n    if (mcpFormat === 'toml') {\n      return this.installMcpToml(targetPath, template);\n    }\n    return this.installMcpJson(targetPath, template);\n  }\n\n  /** Write MCP servers to a JSON config file. */\n  private installMcpJson(targetPath: string, template: Record<string, unknown>): boolean {\n    const config = readJsonFile(targetPath);\n    const servers = (config.mcpServers ?? {}) as Record<string, unknown>;\n\n    for (const [name, def] of Object.entries(template)) {\n      servers[name] = def;\n    }\n\n    config.mcpServers = servers;\n    writeJsonFile(targetPath, config);\n    return true;\n  }\n\n  /** Write MCP servers to a TOML config file. */\n  private installMcpToml(targetPath: string, template: Record<string, unknown>): boolean {\n    let raw = '';\n    try { raw = fs.readFileSync(targetPath, 'utf-8'); } catch { /* doesn't exist */ }\n\n    for (const [name, def] of Object.entries(template)) {\n      raw = buildTomlMcpSection(raw, name, def as Record<string, unknown>);\n    }\n\n    fs.mkdirSync(path.dirname(targetPath), { recursive: true });\n    fs.writeFileSync(targetPath, raw, 'utf-8');\n    return true;\n  }\n\n  /**\n   * Create symlinks for skills through .agents/skills/ canonical layer.\n   * Canonical: .agents/skills/<name> -> <packageRoot>/skills/<name>\n   * Agent-specific: <skillsTarget>/<name> -> ../../.agents/skills/<name>\n   */\n  installSkills(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.skillsTarget) return false;\n\n    const skillNames = this.listSkillDirs();\n    if (skillNames.length === 0) return false;\n\n    const skillsSrc = path.join(this.packageRoot, SKILLS_SUBDIR);\n\n    // Create canonical symlinks: .agents/skills/<name> -> package skills\n    const canonicalDir = path.join(this.projectRoot, CANONICAL_SKILLS_DIR);\n    fs.mkdirSync(canonicalDir, { recursive: true });\n\n    for (const name of skillNames) {\n      const canonicalLink = path.join(canonicalDir, name);\n      const target = path.join(skillsSrc, name);\n      ensureSymlink(canonicalLink, target);\n    }\n\n    // Create agent-specific symlinks if skillsTarget differs from canonical\n    const agentSkillsDir = path.join(this.projectRoot, reg.skillsTarget);\n    const canonicalRel = path.relative(agentSkillsDir, canonicalDir);\n\n    if (reg.skillsTarget !== CANONICAL_SKILLS_DIR) {\n      fs.mkdirSync(agentSkillsDir, { recursive: true });\n      for (const name of skillNames) {\n        const agentLink = path.join(agentSkillsDir, name);\n        const relTarget = path.join(canonicalRel, name);\n        ensureSymlink(agentLink, relTarget);\n      }\n    }\n\n    return true;\n  }\n\n  /**\n   * Merge settings template into the target settings file.\n   * Deep merges objects and deduplicates arrays.\n   */\n  installSettings(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.settingsTarget) return false;\n\n    const template = this.loadTemplate('settings');\n    if (!template) return false;\n\n    const targetPath = path.join(this.projectRoot, reg.settingsTarget);\n    const existing = readJsonFile(targetPath);\n    const merged = deepMergeSettings(existing, template);\n    writeJsonFile(targetPath, merged);\n    return true;\n  }\n\n  /**\n   * Remove Myco entries from the target settings file.\n   * Template-driven: loads the settings template and removes matching values.\n   * Arrays: filter out values present in the template.\n   * Objects: delete keys present in the template.\n   */\n  uninstallSettings(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.settingsTarget) return false;\n\n    const template = this.loadTemplate('settings');\n    if (!template) return false;\n\n    const targetPath = path.join(this.projectRoot, reg.settingsTarget);\n    const settings = readJsonFile(targetPath);\n    if (Object.keys(settings).length === 0) return false;\n\n    const changed = deepRemoveSettings(settings, template);\n    if (!changed) return false;\n\n    writeOrDeleteJsonFile(targetPath, settings);\n    return true;\n  }\n\n  /** Remove Myco hook groups from the target settings file. */\n  uninstallHooks(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.hooksTarget) return false;\n\n    const targetPath = path.join(this.projectRoot, reg.hooksTarget);\n    const settings = readJsonFile(targetPath);\n    const existingHooks = (settings.hooks ?? {}) as Record<string, unknown[]>;\n    if (Object.keys(existingHooks).length === 0) return false;\n\n    const cleaned: Record<string, unknown[]> = {};\n    for (const [event, groups] of Object.entries(existingHooks)) {\n      const nonMyco = (groups as Array<Record<string, unknown>>).filter(\n        (group) => !isMycoHookGroup(group),\n      );\n      if (nonMyco.length > 0) {\n        cleaned[event] = nonMyco;\n      }\n    }\n\n    if (Object.keys(cleaned).length === 0) {\n      delete settings.hooks;\n    } else {\n      settings.hooks = cleaned;\n    }\n\n    writeOrDeleteJsonFile(targetPath, settings);\n    return true;\n  }\n\n  /** Remove Myco MCP server entry from the target config file. */\n  uninstallMcp(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.mcpTarget) return false;\n\n    const targetPath = path.join(this.projectRoot, reg.mcpTarget);\n    const mcpFormat = reg.mcpFormat ?? 'json';\n\n    if (mcpFormat === 'toml') {\n      return this.uninstallMcpToml(targetPath);\n    }\n    return this.uninstallMcpJson(targetPath);\n  }\n\n  private uninstallMcpJson(targetPath: string): boolean {\n    const config = readJsonFile(targetPath);\n    const servers = (config.mcpServers ?? {}) as Record<string, unknown>;\n    if (!servers[MYCO_MCP_SERVER_NAME]) return false;\n\n    delete servers[MYCO_MCP_SERVER_NAME];\n\n    if (Object.keys(servers).length === 0) {\n      delete config.mcpServers;\n    } else {\n      config.mcpServers = servers;\n    }\n\n    writeOrDeleteJsonFile(targetPath, config);\n    return true;\n  }\n\n  private uninstallMcpToml(targetPath: string): boolean {\n    let raw = '';\n    try { raw = fs.readFileSync(targetPath, 'utf-8'); } catch { return false; }\n\n    const sectionHeader = `[mcp_servers.${MYCO_MCP_SERVER_NAME}]`;\n    if (!raw.includes(sectionHeader)) return false;\n\n    const startIdx = raw.indexOf(sectionHeader);\n    const endIdx = findTomlSectionEnd(raw, startIdx + sectionHeader.length, MYCO_MCP_SERVER_NAME);\n    const before = raw.slice(0, startIdx).trimEnd();\n    const after = raw.slice(endIdx).trimStart();\n    const updated = (before + (before && after ? '\\n\\n' : '') + after).trimEnd();\n\n    if (!updated.trim()) {\n      try { fs.unlinkSync(targetPath); } catch { /* ignore */ }\n    } else {\n      fs.writeFileSync(targetPath, updated + '\\n', 'utf-8');\n    }\n    return true;\n  }\n\n  /** Remove skill symlinks (canonical + agent-specific). */\n  uninstallSkills(): boolean {\n    const reg = this.manifest.registration;\n    if (!reg?.skillsTarget) return false;\n\n    const skillNames = this.listSkillDirs();\n    if (skillNames.length === 0) return false;\n\n    let removed = false;\n\n    // Remove agent-specific symlinks\n    if (reg.skillsTarget !== CANONICAL_SKILLS_DIR) {\n      for (const name of skillNames) {\n        const link = path.join(this.projectRoot, reg.skillsTarget, name);\n        try { fs.unlinkSync(link); removed = true; } catch { /* doesn't exist */ }\n      }\n      // Remove agent skills dir if now empty (rmdirSync fails atomically if non-empty)\n      try { fs.rmdirSync(path.join(this.projectRoot, reg.skillsTarget)); } catch { /* not empty or missing */ }\n    }\n\n    // Remove canonical symlinks\n    const canonicalDir = path.join(this.projectRoot, CANONICAL_SKILLS_DIR);\n    for (const name of skillNames) {\n      const link = path.join(canonicalDir, name);\n      try { fs.unlinkSync(link); removed = true; } catch { /* doesn't exist */ }\n    }\n    // Remove empty dirs (rmdirSync fails atomically if non-empty)\n    try { fs.rmdirSync(canonicalDir); } catch { /* not empty or missing */ }\n    try { fs.rmdirSync(path.join(this.projectRoot, '.agents')); } catch { /* not empty or missing */ }\n\n    return removed;\n  }\n\n  /** Remove Myco entries from project .gitignore. */\n  private cleanGitignore(): void {\n    const gitignorePath = path.join(this.projectRoot, '.gitignore');\n    let content = '';\n    try { content = fs.readFileSync(gitignorePath, 'utf-8'); } catch { return; }\n\n    // Remove the Myco skill symlinks block and individual entries\n    const reg = this.manifest.registration;\n    const skillNames = reg?.skillsTarget && reg.skillsTarget !== CANONICAL_SKILLS_DIR\n      ? this.listSkillDirs()\n      : [];\n    const lines = content.split('\\n');\n    const filtered = lines.filter((line) => {\n      if (line === GITIGNORE_SKILLS_COMMENT) return false;\n      if (line === `${CANONICAL_SKILLS_DIR}/`) return false;\n      if (skillNames.some((name) => line === `${reg!.skillsTarget}/${name}`)) return false;\n      return true;\n    });\n\n    // Clean up consecutive blank lines left by removal\n    const cleaned = filtered.join('\\n').replace(/\\n{3,}/g, '\\n\\n').trim();\n    if (cleaned) {\n      fs.writeFileSync(gitignorePath, cleaned + '\\n', 'utf-8');\n    } else {\n      try { fs.unlinkSync(gitignorePath); } catch { /* ignore */ }\n    }\n  }\n}\n\n// --- TOML helpers ---\n\n/** TOML section header pattern. */\nconst TOML_SECTION_RE = /^\\[([^\\]]+)\\]/;\n\n/** Find where a [mcp_servers.<name>] section ends in a TOML string. */\nfunction findTomlSectionEnd(raw: string, searchStart: number, serverName: string): number {\n  const subsectionPrefix = `mcp_servers.${serverName}.`;\n  const rawLines = raw.slice(searchStart).split('\\n');\n  let offset = searchStart;\n  for (const line of rawLines) {\n    offset += line.length + 1;\n    const m = line.match(TOML_SECTION_RE);\n    if (m && !m[1].startsWith(subsectionPrefix) && m[1] !== `mcp_servers.${serverName}`) {\n      return offset - line.length - 1;\n    }\n  }\n  return raw.length;\n}\n\n/**\n * Build/update a specific mcp_servers entry in a TOML string.\n * Pure transformation — returns updated content without writing to disk.\n */\nfunction buildTomlMcpSection(\n  raw: string,\n  serverName: string,\n  server: Record<string, unknown>,\n): string {\n  const sectionHeader = `[mcp_servers.${serverName}]`;\n\n  // Build the TOML block for this server\n  const lines: string[] = [sectionHeader];\n  for (const [key, val] of Object.entries(server)) {\n    if (key === 'env' && typeof val === 'object' && val !== null) continue; // Handle env as subtable\n    if (typeof val === 'string') {\n      lines.push(`${key} = \"${val}\"`);\n    } else if (Array.isArray(val)) {\n      lines.push(`${key} = [${val.map((v: unknown) => `\"${v}\"`).join(', ')}]`);\n    } else if (typeof val === 'boolean') {\n      lines.push(`${key} = ${val}`);\n    }\n  }\n\n  // Add env subtable if present\n  const env = server.env as Record<string, string> | undefined;\n  if (env && Object.keys(env).length > 0) {\n    lines.push('');\n    lines.push(`[mcp_servers.${serverName}.env]`);\n    for (const [key, val] of Object.entries(env)) {\n      lines.push(`${key} = \"${val}\"`);\n    }\n  }\n\n  const block = lines.join('\\n');\n\n  let updated: string;\n  if (raw.includes(sectionHeader)) {\n    const startIdx = raw.indexOf(sectionHeader);\n    const endIdx = findTomlSectionEnd(raw, startIdx + sectionHeader.length, serverName);\n    const before = raw.slice(0, startIdx).trimEnd();\n    const after = raw.slice(endIdx);\n    const separator = before ? '\\n\\n' : '';\n    updated = (before + separator + block + after).trimEnd() + '\\n';\n  } else {\n    // Append new section\n    const separator = raw.trim() ? '\\n\\n' : '';\n    updated = (raw.trimEnd() + separator + block).trimEnd() + '\\n';\n  }\n\n  return updated;\n}\n\n// --- Settings merge helpers ---\n\n/** Deep merge two settings objects. Arrays are appended + deduplicated; objects recurse. */\nfunction deepMergeSettings(\n  target: Record<string, unknown>,\n  source: Record<string, unknown>,\n): Record<string, unknown> {\n  const result = { ...target };\n  for (const [key, sourceVal] of Object.entries(source)) {\n    const targetVal = result[key];\n    if (Array.isArray(sourceVal) && Array.isArray(targetVal)) {\n      result[key] = [...new Set([...targetVal, ...sourceVal])];\n    } else if (isPlainObject(sourceVal) && isPlainObject(targetVal)) {\n      result[key] = deepMergeSettings(\n        targetVal as Record<string, unknown>,\n        sourceVal as Record<string, unknown>,\n      );\n    } else {\n      result[key] = sourceVal;\n    }\n  }\n  return result;\n}\n\nfunction isPlainObject(val: unknown): val is Record<string, unknown> {\n  return typeof val === 'object' && val !== null && !Array.isArray(val);\n}\n\n/**\n * Remove values from target that match the template structure.\n * Arrays: filter out values present in the template array.\n * Objects: delete keys present in the template object, recurse into nested objects.\n * Returns true if anything was removed.\n */\nfunction deepRemoveSettings(\n  target: Record<string, unknown>,\n  template: Record<string, unknown>,\n): boolean {\n  let changed = false;\n  for (const [key, templateVal] of Object.entries(template)) {\n    const targetVal = target[key];\n    if (targetVal === undefined) continue;\n\n    if (Array.isArray(templateVal) && Array.isArray(targetVal)) {\n      // Filter out values that appear in the template array\n      const templateSet = new Set(templateVal.map(String));\n      const filtered = targetVal.filter((v) => !templateSet.has(String(v)));\n      if (filtered.length !== targetVal.length) {\n        if (filtered.length > 0) {\n          target[key] = filtered;\n        } else {\n          delete target[key];\n        }\n        changed = true;\n      }\n    } else if (isPlainObject(templateVal) && isPlainObject(targetVal)) {\n      // Recurse into nested objects, then prune if empty\n      if (deepRemoveSettings(targetVal, templateVal)) {\n        if (Object.keys(targetVal).length === 0) {\n          delete target[key];\n        }\n        changed = true;\n      }\n    } else {\n      // Scalar: delete if value matches\n      if (String(targetVal) === String(templateVal)) {\n        delete target[key];\n        changed = true;\n      }\n    }\n  }\n  return changed;\n}\n\n// --- JSON helpers ---\n\nfunction readJsonFile(filePath: string): Record<string, unknown> {\n  try {\n    return JSON.parse(fs.readFileSync(filePath, 'utf-8'));\n  } catch {\n    return {};\n  }\n}\n\nfunction writeJsonFile(filePath: string, data: Record<string, unknown>): void {\n  fs.mkdirSync(path.dirname(filePath), { recursive: true });\n  fs.writeFileSync(filePath, JSON.stringify(data, null, 2) + '\\n', 'utf-8');\n}\n\n/** Write a JSON file, or delete it if the object is empty. */\nfunction writeOrDeleteJsonFile(filePath: string, data: Record<string, unknown>): void {\n  if (Object.keys(data).length === 0) {\n    try { fs.unlinkSync(filePath); } catch { /* ignore */ }\n  } else {\n    writeJsonFile(filePath, data);\n  }\n}\n\n/**\n * Create a starter AGENTS.md if the project doesn't have one.\n * Idempotent — skips if AGENTS.md already exists.\n */\nfunction ensureAgentsMd(projectRoot: string, packageRoot: string): void {\n  const agentsMdPath = path.join(projectRoot, 'AGENTS.md');\n  if (fs.existsSync(agentsMdPath)) return;\n\n  const candidates = [\n    path.join(packageRoot, 'src/symbionts/templates/agents-starter.md'),\n    path.join(packageRoot, 'dist/src/symbionts/templates/agents-starter.md'),\n  ];\n  for (const p of candidates) {\n    try {\n      const content = fs.readFileSync(p, 'utf-8');\n      fs.writeFileSync(agentsMdPath, content, 'utf-8');\n      return;\n    } catch { /* try next */ }\n  }\n}\n\nfunction ensureSymlink(linkPath: string, target: string): void {\n  try {\n    if (fs.readlinkSync(linkPath) === target) return;\n  } catch { /* does not exist or is not a symlink — proceed */ }\n  try { fs.rmSync(linkPath, { recursive: true, force: true }); } catch { /* ignore */ }\n  fs.symlinkSync(target, linkPath);\n}\n","import fs from 'node:fs';\nimport path from 'node:path';\nimport os from 'node:os';\nimport { OllamaBackend } from '../intelligence/ollama.js';\nimport { LmStudioBackend } from '../intelligence/lm-studio.js';\n\nimport { DaemonClient } from '../hooks/client.js';\nimport { initDatabase, closeDatabase, vaultDbPath } from '../db/client.js';\nimport { SymbiontInstaller } from '../symbionts/installer.js';\nimport type { SymbiontManifest } from '../symbionts/manifest-schema.js';\n\nexport { parseStringFlag, parseIntFlag } from '../logs/format.js';\n\n/**\n * Initialize the singleton database for direct CLI reads.\n * Used by CLI commands that only need reads (stats, search, session).\n * Does NOT require the daemon to be running — WAL mode allows concurrent reads.\n *\n * @returns a cleanup function that closes the database.\n */\nexport function initVaultDb(vaultDir: string): () => void {\n  initDatabase(vaultDbPath(vaultDir));\n  return closeDatabase;\n}\n\n/** Connect to the daemon, ensuring it's running. 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package/dist/cli-NTP2SSAU.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/cli.ts"],"sourcesContent":["#!/usr/bin/env node\nimport { loadEnv } from './cli/shared.js';\nimport { resolveVaultDir } from './vault/resolve.js';\nimport fs from 'node:fs';\nimport path from 'node:path';\n\nloadEnv();\n\nconst USAGE = `Usage: myco <command> [args]\n\nCommands:\n  init [options]           Initialize a new vault\n  update                   Update vault files and agent registration\n  remove [--remove-vault]  Remove Myco from this project (vault preserved by default)\n  config <get|set> [args]  Get or set vault config values\n  detect-providers         Detect available LLM/embedding providers (JSON)\n  verify                   Test LLM and embedding connectivity\n  stats                    Vault health, index counts, vector count\n  search <query>           Combined FTS + vector search with scores\n  vectors <query>          Raw vector search with similarity scores\n  session [id|latest]      Show a session\n  logs [options]           View daemon logs\n  setup-llm [options]      Configure LLM and embedding providers\n  setup-digest [options]   Configure digest and capture settings\n  agent [options]          Run the intelligence agent\n  task <subcommand>        Manage agent task definitions\n  team <init|upgrade>      Provision or upgrade team sync infrastructure\n  doctor [--fix]          Check vault health and repair issues\n  restart                  Restart the daemon\n  version                  Show plugin version\n  mcp                     Start the MCP stdio server\n  hook <name>             Run a hook (session-start, session-end, stop, user-prompt-submit, post-tool-use, post-tool-use-failure, subagent-start, subagent-stop, stop-failure, task-completed, pre-compact, post-compact)\n  daemon --vault <dir>    Start the daemon process\n`;\n\nasync function main(): Promise<void> {\n  const [cmd, ...args] = process.argv.slice(2);\n  if (!cmd || cmd === '--help' || cmd === '-h') {\n    process.stdout.write(USAGE);\n    return;\n  }\n\n  if (cmd === 'init') return (await import('./cli/init.js')).run(args);\n  if (cmd === 'detect-providers') return (await import('./cli/detect-providers.js')).run(args);\n  if (cmd === 'version' || cmd === '--version' || cmd === '-v') {\n    const { getPluginVersion } = await import('./version.js');\n    console.log(getPluginVersion());\n    return;\n  }\n  if (cmd === 'mcp') return (await import('./mcp/server.js')).main();\n  if (cmd === 'hook') {\n    const hookName = args[0];\n    const HOOK_DISPATCH: Record<string, () => Promise<{ main: () => Promise<void> }>> = {\n      'session-start': () => import('./hooks/session-start.js'),\n      'session-end': () => import('./hooks/session-end.js'),\n      'stop': () => import('./hooks/stop.js'),\n      'user-prompt-submit': () => import('./hooks/user-prompt-submit.js'),\n      'post-tool-use': () => import('./hooks/post-tool-use.js'),\n      'post-tool-use-failure': () => import('./hooks/post-tool-use-failure.js'),\n      'subagent-start': () => import('./hooks/subagent-start.js'),\n      'subagent-stop': () => import('./hooks/subagent-stop.js'),\n      'stop-failure': () => import('./hooks/stop-failure.js'),\n      'task-completed': () => import('./hooks/task-completed.js'),\n      'pre-compact': () => import('./hooks/pre-compact.js'),\n      'post-compact': () => import('./hooks/post-compact.js'),\n    };\n    const loader = HOOK_DISPATCH[hookName];\n    if (!loader) {\n      console.error(`Unknown hook: ${hookName}. Available: ${Object.keys(HOOK_DISPATCH).join(', ')}`);\n      process.exit(1);\n    }\n    return (await loader()).main();\n  }\n  if (cmd === 'daemon') return (await import('./daemon/main.js')).main();\n\n  if (cmd === 'doctor') {\n    const vaultDir = resolveVaultDir();\n    return (await import('./cli/doctor.js')).run(args, vaultDir);\n  }\n\n  if (cmd === 'update') return (await import('./cli/update.js')).run(args);\n  if (cmd === 'remove') return (await import('./cli/remove.js')).run(args);\n\n  const vaultDir = resolveVaultDir();\n  if (!fs.existsSync(path.join(vaultDir, 'myco.yaml'))) {\n    console.error(`No myco.yaml found in ${vaultDir}. Run 'myco init' first.`);\n    process.exit(1);\n  }\n\n  switch (cmd) {\n    case 'config': return (await import('./cli/config.js')).run(args, vaultDir);\n    case 'verify': return (await import('./cli/verify.js')).run(args, vaultDir);\n    case 'stats': return (await import('./cli/stats.js')).run(args, vaultDir);\n    case 'search': return (await import('./cli/search.js')).run(args, vaultDir);\n    case 'vectors': return (await import('./cli/search.js')).runVectors(args, vaultDir);\n    case 'session': return (await import('./cli/session.js')).run(args, vaultDir);\n    case 'setup-llm': return (await import('./cli/setup-llm.js')).run(args, vaultDir);\n    case 'setup-digest': return (await import('./cli/setup-digest.js')).run(args, vaultDir);\n    case 'agent': return (await import('./cli/agent-run.js')).run(args, vaultDir);\n    case 'task': return (await import('./cli/agent-tasks.js')).run(args, vaultDir);\n    case 'team': {\n      const sub = args[0];\n      if (sub === 'init') return (await import('./cli/team.js')).teamInit(vaultDir);\n      if (sub === 'upgrade') return (await import('./cli/team.js')).teamUpgrade(vaultDir);\n      console.error('Usage: myco team <init|upgrade>');\n      process.exit(1);\n      break;\n    }\n    case 'restart': return (await import('./cli/restart.js')).run(args, vaultDir);\n    case 'logs': return (await import('./cli/logs.js')).run(args, vaultDir);\n    default:\n      console.error(`Unknown command: ${cmd}`);\n      process.stdout.write(USAGE);\n      process.exit(1);\n  }\n}\n\nmain().catch((err) => {\n  console.error(`myco: ${(err as Error).message}`);\n  process.exit(1);\n});\n"],"mappings":";;;;;;;;;;;;;;;;;;;AAGA,OAAO,QAAQ;AACf,OAAO,UAAU;AAEjB,QAAQ;AAER,IAAM,QAAQ;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AA2Bd,eAAe,OAAsB;AACnC,QAAM,CAAC,KAAK,GAAG,IAAI,IAAI,QAAQ,KAAK,MAAM,CAAC;AAC3C,MAAI,CAAC,OAAO,QAAQ,YAAY,QAAQ,MAAM;AAC5C,YAAQ,OAAO,MAAM,KAAK;AAC1B;AAAA,EACF;AAEA,MAAI,QAAQ,OAAQ,SAAQ,MAAM,OAAO,oBAAe,GAAG,IAAI,IAAI;AACnE,MAAI,QAAQ,mBAAoB,SAAQ,MAAM,OAAO,gCAA2B,GAAG,IAAI,IAAI;AAC3F,MAAI,QAAQ,aAAa,QAAQ,eAAe,QAAQ,MAAM;AAC5D,UAAM,EAAE,iBAAiB,IAAI,MAAM,OAAO,uBAAc;AACxD,YAAQ,IAAI,iBAAiB,CAAC;AAC9B;AAAA,EACF;AACA,MAAI,QAAQ,MAAO,SAAQ,MAAM,OAAO,sBAAiB,GAAG,KAAK;AACjE,MAAI,QAAQ,QAAQ;AAClB,UAAM,WAAW,KAAK,CAAC;AACvB,UAAM,gBAA8E;AAAA,MAClF,iBAAiB,MAAM,OAAO,6BAA0B;AAAA,MACxD,eAAe,MAAM,OAAO,2BAAwB;AAAA,MACpD,QAAQ,MAAM,OAAO,oBAAiB;AAAA,MACtC,sBAAsB,MAAM,OAAO,kCAA+B;AAAA,MAClE,iBAAiB,MAAM,OAAO,6BAA0B;AAAA,MACxD,yBAAyB,MAAM,OAAO,qCAAkC;AAAA,MACxE,kBAAkB,MAAM,OAAO,8BAA2B;AAAA,MAC1D,iBAAiB,MAAM,OAAO,6BAA0B;AAAA,MACxD,gBAAgB,MAAM,OAAO,4BAAyB;AAAA,MACtD,kBAAkB,MAAM,OAAO,8BAA2B;AAAA,MAC1D,eAAe,MAAM,OAAO,2BAAwB;AAAA,MACpD,gBAAgB,MAAM,OAAO,4BAAyB;AAAA,IACxD;AACA,UAAM,SAAS,cAAc,QAAQ;AACrC,QAAI,CAAC,QAAQ;AACX,cAAQ,MAAM,iBAAiB,QAAQ,gBAAgB,OAAO,KAAK,aAAa,EAAE,KAAK,IAAI,CAAC,EAAE;AAC9F,cAAQ,KAAK,CAAC;AAAA,IAChB;AACA,YAAQ,MAAM,OAAO,GAAG,KAAK;AAAA,EAC/B;AACA,MAAI,QAAQ,SAAU,SAAQ,MAAM,OAAO,oBAAkB,GAAG,KAAK;AAErE,MAAI,QAAQ,UAAU;AACpB,UAAMA,YAAW,gBAAgB;AACjC,YAAQ,MAAM,OAAO,sBAAiB,GAAG,IAAI,MAAMA,SAAQ;AAAA,EAC7D;AAEA,MAAI,QAAQ,SAAU,SAAQ,MAAM,OAAO,sBAAiB,GAAG,IAAI,IAAI;AACvE,MAAI,QAAQ,SAAU,SAAQ,MAAM,OAAO,sBAAiB,GAAG,IAAI,IAAI;AAEvE,QAAM,WAAW,gBAAgB;AACjC,MAAI,CAAC,GAAG,WAAW,KAAK,KAAK,UAAU,WAAW,CAAC,GAAG;AACpD,YAAQ,MAAM,yBAAyB,QAAQ,0BAA0B;AACzE,YAAQ,KAAK,CAAC;AAAA,EAChB;AAEA,UAAQ,KAAK;AAAA,IACX,KAAK;AAAU,cAAQ,MAAM,OAAO,sBAAiB,GAAG,IAAI,MAAM,QAAQ;AAAA,IAC1E,KAAK;AAAU,cAAQ,MAAM,OAAO,sBAAiB,GAAG,IAAI,MAAM,QAAQ;AAAA,IAC1E,KAAK;AAAS,cAAQ,MAAM,OAAO,qBAAgB,GAAG,IAAI,MAAM,QAAQ;AAAA,IACxE,KAAK;AAAU,cAAQ,MAAM,OAAO,sBAAiB,GAAG,IAAI,MAAM,QAAQ;AAAA,IAC1E,KAAK;AAAW,cAAQ,MAAM,OAAO,sBAAiB,GAAG,WAAW,MAAM,QAAQ;AAAA,IAClF,KAAK;AAAW,cAAQ,MAAM,OAAO,uBAAkB,GAAG,IAAI,MAAM,QAAQ;AAAA,IAC5E,KAAK;AAAa,cAAQ,MAAM,OAAO,yBAAoB,GAAG,IAAI,MAAM,QAAQ;AAAA,IAChF,KAAK;AAAgB,cAAQ,MAAM,OAAO,4BAAuB,GAAG,IAAI,MAAM,QAAQ;AAAA,IACtF,KAAK;AAAS,cAAQ,MAAM,OAAO,yBAAoB,GAAG,IAAI,MAAM,QAAQ;AAAA,IAC5E,KAAK;AAAQ,cAAQ,MAAM,OAAO,2BAAsB,GAAG,IAAI,MAAM,QAAQ;AAAA,IAC7E,KAAK,QAAQ;AACX,YAAM,MAAM,KAAK,CAAC;AAClB,UAAI,QAAQ,OAAQ,SAAQ,MAAM,OAAO,oBAAe,GAAG,SAAS,QAAQ;AAC5E,UAAI,QAAQ,UAAW,SAAQ,MAAM,OAAO,oBAAe,GAAG,YAAY,QAAQ;AAClF,cAAQ,MAAM,iCAAiC;AAC/C,cAAQ,KAAK,CAAC;AACd;AAAA,IACF;AAAA,IACA,KAAK;AAAW,cAAQ,MAAM,OAAO,uBAAkB,GAAG,IAAI,MAAM,QAAQ;AAAA,IAC5E,KAAK;AAAQ,cAAQ,MAAM,OAAO,oBAAe,GAAG,IAAI,MAAM,QAAQ;AAAA,IACtE;AACE,cAAQ,MAAM,oBAAoB,GAAG,EAAE;AACvC,cAAQ,OAAO,MAAM,KAAK;AAC1B,cAAQ,KAAK,CAAC;AAAA,EAClB;AACF;AAEA,KAAK,EAAE,MAAM,CAAC,QAAQ;AACpB,UAAQ,MAAM,SAAU,IAAc,OAAO,EAAE;AAC/C,UAAQ,KAAK,CAAC;AAChB,CAAC;","names":["vaultDir"]}