@gonzih/research-rabbit 0.1.0

package/dist/analysis.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"analysis.js","sourceRoot":"","sources":["../src/analysis.ts"],"names":[],"mappings":"AAAA,OAAO,SAAS,MAAM,mBAAmB,CAAC;AAG1C,MAAM,MAAM,GAAG,IAAI,SAAS,EAAE,CAAC;AAE/B,SAAS,YAAY,CAAC,MAAe;IACnC,OAAO,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CACzB,IAAI,CAAC,GAAC,CAAC,MAAM,CAAC,CAAC,KAAK,MAAM,CAAC,CAAC,IAAI,QAAQ,CAAC,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,EAAC,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,OAAO,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,EAAE;MAC7G,CAAC,CAAC,EAAE;YACE,CAAC,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAC,EAAE,GAAG,CAAC,GAAG,CAAC,CAAC,QAAQ,CAAC,MAAM,GAAG,GAAG,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;aAClE,CAAC,CAAC,aAAa,IAAI,SAAS,EAAE,CACxC,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;AACjB,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,cAAc,CAClC,OAAe,EACf,KAAa,EACb,QAAgB,EAChB,KAAa;IAEb,IAAI,QAAQ,CAAC,IAAI,EAAE,CAAC,MAAM,GAAG,EAAE,EAAE,CAAC;QAChC,OAAO;YACL,OAAO;YACP,KAAK;YACL,SAAS,EAAE,iCAAiC;YAC5C,WAAW,EAAE,SAAS;YACtB,WAAW,EAAE,EAAE;YACf,WAAW,EAAE,EAAE;YACf,gBAAgB,EAAE,oDAAoD;SACvE,CAAC;IACJ,CAAC;IAED,MAAM,QAAQ,GAAG,MAAM,MAAM,CAAC,QAAQ,CAAC,MAAM,CAAC;QAC5C,KAAK,EAAE,iBAAiB;QACxB,UAAU,EAAE,IAAI;QAChB,QAAQ,EAAE,CAAC;gBACT,IAAI,EAAE,MAAM;gBACZ,OAAO,EAAE,oEAAoE,KAAK;;SAE/E,KAAK;YACF,QAAQ;;;;;;;;;EASlB;aACG,CAAC;KACH,CAAC,CAAC;IAEH,MAAM,IAAI,GAAG,QAAQ,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,MAAM,CAAC,EAAE,IAAI,IAAI,EAAE,CAAC;IAEvE,IAAI,CAAC;QACH,MAAM,SAAS,GAAG,IAAI,CAAC,KAAK,CAAC,aAAa,CAAC,CAAC;QAC5C,IAAI,CAAC,SAAS;YAAE,MAAM,IAAI,KAAK,CAAC,eAAe,CAAC,CAAC;QACjD,MAAM,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC;QACxC,OAAO,EAAE,OAAO,EAAE,KAAK,EAAE,GAAG,MAAM,EAAE,CAAC;IACvC,CAAC;IAAC,MAAM,CAAC;QACP,OAAO;YACL,OAAO;YACP,KAAK;YACL,SAAS,EAAE,IAAI,CAAC,SAAS,CAAC,CAAC,EAAE,GAAG,CAAC;YACjC,WAAW,EAAE,iBAAiB;YAC9B,WAAW,EAAE,EAAE;YACf,WAAW,EAAE,EAAE;YACf,gBAAgB,EAAE,gCAAgC;SACnD,CAAC;IACJ,CAAC;AACH,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,aAAa,CAAC,MAAe,EAAE,KAAa;IAChE,IAAI,MAAM,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACxB,OAAO,EAAE,SAAS,EAAE,EAAE,EAAE,OAAO,EAAE,EAAE,EAAE,sBAAsB,EAAE,EAAE,EAAE,cAAc,EAAE,EAAE,EAAE,CAAC;IACxF,CAAC;IAED,MAAM,UAAU,GAAG,YAAY,CAAC,MAAM,CAAC,CAAC;IAExC,MAAM,QAAQ,GAAG,MAAM,MAAM,CAAC,QAAQ,CAAC,MAAM,CAAC;QAC5C,KAAK,EAAE,iBAAiB;QACxB,UAAU,EAAE,IAAI;QAChB,QAAQ,EAAE,CAAC;gBACT,IAAI,EAAE,MAAM;gBACZ,OAAO,EAAE,8DAA8D,KAAK;;WAEvE,MAAM,CAAC,MAAM;;EAEtB,UAAU;;;;;;;;;;;;;;;;wFAgB4E;aACnF,CAAC;KACH,CAAC,CAAC;IAEH,MAAM,IAAI,GAAG,QAAQ,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,MAAM,CAAC,EAAE,IAAI,IAAI,EAAE,CAAC;IAEvE,IAAI,CAAC;QACH,MAAM,SAAS,GAAG,IAAI,CAAC,KAAK,CAAC,aAAa,CAAC,CAAC;QAC5C,IAAI,CAAC,SAAS;YAAE,MAAM,IAAI,KAAK,CAAC,eAAe,CAAC,CAAC;QACjD,OAAO,IAAI,CAAC,KAAK,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC;IAClC,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,EAAE,SAAS,EAAE,CAAC,IAAI,CAAC,EAAE,OAAO,EAAE,EAAE,EAAE,sBAAsB,EAAE,EAAE,EAAE,cAAc,EAAE,EAAE,EAAE,CAAC;IAC5F,CAAC;AACH,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,QAAQ,CAAC,MAAe,EAAE,KAAa;IAC3D,IAAI,MAAM,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACxB,OAAO,EAAE,IAAI,EAAE,EAAE,EAAE,0BAA0B,EAAE,EAAE,EAAE,CAAC;IACtD,CAAC;IAED,MAAM,UAAU,GAAG,YAAY,CAAC,MAAM,CAAC,CAAC;IAExC,MAAM,QAAQ,GAAG,MAAM,MAAM,CAAC,QAAQ,CAAC,MAAM,CAAC;QAC5C,KAAK,EAAE,iBAAiB;QACxB,UAAU,EAAE,IAAI;QAChB,QAAQ,EAAE,CAAC;gBACT,IAAI,EAAE,MAAM;gBACZ,OAAO,EAAE,4EAA4E,KAAK;;WAErF,MAAM,CAAC,MAAM;;EAEtB,UAAU;;;;;;;;;;;;;;;;;;;;;;EAsBV;aACG,CAAC;KACH,CAAC,CAAC;IAEH,MAAM,IAAI,GAAG,QAAQ,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,MAAM,CAAC,EAAE,IAAI,IAAI,EAAE,CAAC;IAEvE,IAAI,CAAC;QACH,MAAM,SAAS,GAAG,IAAI,CAAC,KAAK,CAAC,aAAa,CAAC,CAAC;QAC5C,IAAI,CAAC,SAAS;YAAE,MAAM,IAAI,KAAK,CAAC,eAAe,CAAC,CAAC;QACjD,OAAO,IAAI,CAAC,KAAK,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC;IAClC,CAAC;IAAC,MAAM,CAAC;QACP,OAAO,EAAE,IAAI,EAAE,CAAC,EAAE,WAAW,EAAE,IAAI,EAAE,IAAI,EAAE,OAAO,EAAE,UAAU,EAAE,KAAK,EAAE,SAAS,EAAE,aAAa,EAAE,CAAC,EAAE,0BAA0B,EAAE,EAAE,EAAE,CAAC;IACvI,CAAC;AACH,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,aAAa,CACjC,KAAa,EACb,MAAc,EACd,MAAe;IAEf,MAAM,UAAU,GAAG,YAAY,CAAC,MAAM,CAAC,CAAC;IAExC,MAAM,QAAQ,GAAG,MAAM,MAAM,CAAC,QAAQ,CAAC,MAAM,CAAC;QAC5C,KAAK,EAAE,iBAAiB;QACxB,UAAU,EAAE,IAAI;QAChB,QAAQ,EAAE,CAAC;gBACT,IAAI,EAAE,MAAM;gBACZ,OAAO,EAAE;;UAEL,KAAK;qBACM,MAAM;;;EAGzB,UAAU;;;;;;;;;;;;;;;;;;;;;;;;;;;EA2BV;aACG,CAAC;KACH,CAAC,CAAC;IAEH,MAAM,IAAI,GAAG,QAAQ,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,MAAM,CAAC,EAAE,IAAI,IAAI,EAAE,CAAC;IAEvE,IAAI,CAAC;QACH,MAAM,SAAS,GAAG,IAAI,CAAC,KAAK,CAAC,aAAa,CAAC,CAAC;QAC5C,IAAI,CAAC,SAAS;YAAE,MAAM,IAAI,KAAK,CAAC,eAAe,CAAC,CAAC;QACjD,OAAO,IAAI,CAAC,KAAK,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,CAAC;IAClC,CAAC;IAAC,MAAM,CAAC;QACP,OAAO;YACL,gBAAgB,EAAE;gBAChB,eAAe,EAAE,MAAM;gBACvB,mBAAmB,EAAE,EAAE;gBACvB,gBAAgB,EAAE,EAAE;gBACpB,kBAAkB,EAAE,CAAC,8BAA8B,CAAC;aACrD;YACD,eAAe,EAAE,CAAC,iBAAiB,CAAC;SACrC,CAAC;IACJ,CAAC;AACH,CAAC"}

package/dist/citations.d.ts

@@ -0,0 +1,3 @@
+import type { Paper, CitationStyle } from './types.js';
+export declare function formatCitation(paper: Paper, style: CitationStyle): string;
+//# sourceMappingURL=citations.d.ts.map

package/dist/citations.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"citations.d.ts","sourceRoot":"","sources":["../src/citations.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,KAAK,EAAE,aAAa,EAAE,MAAM,YAAY,CAAC;AAyBvD,wBAAgB,cAAc,CAAC,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,aAAa,GAAG,MAAM,CA4BzE"}

package/dist/citations.js

@@ -0,0 +1,52 @@
+function formatAuthorsApa(authors) {
+    if (authors.length === 0)
+        return 'Unknown Author';
+    if (authors.length === 1)
+        return formatNameApa(authors[0]);
+    if (authors.length <= 20)
+        return authors.map(formatNameApa).join(', ');
+    return authors.slice(0, 19).map(formatNameApa).join(', ') + ', ... ' + formatNameApa(authors[authors.length - 1]);
+}
+function formatNameApa(name) {
+    const parts = name.trim().split(/\s+/);
+    if (parts.length === 1)
+        return parts[0];
+    const last = parts[parts.length - 1];
+    const initials = parts.slice(0, -1).map(p => p[0] + '.').join(' ');
+    return `${last}, ${initials}`;
+}
+function formatNameMla(name) {
+    const parts = name.trim().split(/\s+/);
+    if (parts.length === 1)
+        return parts[0];
+    const last = parts[parts.length - 1];
+    const first = parts.slice(0, -1).join(' ');
+    return `${last}, ${first}`;
+}
+export function formatCitation(paper, style) {
+    const authors = paper.authors.length > 0 ? paper.authors : ['Unknown Author'];
+    const year = paper.year > 0 ? paper.year.toString() : 'n.d.';
+    const title = paper.title;
+    const url = paper.doi ? `https://doi.org/${paper.doi}` : paper.url;
+    const source = paper.source.replace('_', ' ').split(' ').map(w => w[0].toUpperCase() + w.slice(1)).join(' ');
+    switch (style) {
+        case 'apa': {
+            const formattedAuthors = formatAuthorsApa(authors);
+            return `${formattedAuthors} (${year}). ${title}. ${source}. ${url}`;
+        }
+        case 'mla': {
+            const firstAuthor = formatNameMla(authors[0]);
+            const otherAuthors = authors.length > 1
+                ? (authors.length === 2 ? ` and ${authors[1]}` : ', et al.')
+                : '';
+            return `${firstAuthor}${otherAuthors}. "${title}." ${source}, ${year}. ${url}`;
+        }
+        case 'chicago': {
+            const formattedAuthors = authors.length <= 3
+                ? authors.join(', ')
+                : authors.slice(0, 3).join(', ') + ', et al.';
+            return `${formattedAuthors}. "${title}." ${source} (${year}). ${url}.`;
+        }
+    }
+}
+//# sourceMappingURL=citations.js.map

package/dist/citations.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"citations.js","sourceRoot":"","sources":["../src/citations.ts"],"names":[],"mappings":"AAEA,SAAS,gBAAgB,CAAC,OAAiB;IACzC,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC;QAAE,OAAO,gBAAgB,CAAC;IAClD,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC;QAAE,OAAO,aAAa,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC;IAC3D,IAAI,OAAO,CAAC,MAAM,IAAI,EAAE;QAAE,OAAO,OAAO,CAAC,GAAG,CAAC,aAAa,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IACvE,OAAO,OAAO,CAAC,KAAK,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,aAAa,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,QAAQ,GAAG,aAAa,CAAC,OAAO,CAAC,OAAO,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC;AACpH,CAAC;AAED,SAAS,aAAa,CAAC,IAAY;IACjC,MAAM,KAAK,GAAG,IAAI,CAAC,IAAI,EAAE,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC;IACvC,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC;QAAE,OAAO,KAAK,CAAC,CAAC,CAAC,CAAC;IACxC,MAAM,IAAI,GAAG,KAAK,CAAC,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;IACrC,MAAM,QAAQ,GAAG,KAAK,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;IACnE,OAAO,GAAG,IAAI,KAAK,QAAQ,EAAE,CAAC;AAChC,CAAC;AAED,SAAS,aAAa,CAAC,IAAY;IACjC,MAAM,KAAK,GAAG,IAAI,CAAC,IAAI,EAAE,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC;IACvC,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC;QAAE,OAAO,KAAK,CAAC,CAAC,CAAC,CAAC;IACxC,MAAM,IAAI,GAAG,KAAK,CAAC,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;IACrC,MAAM,KAAK,GAAG,KAAK,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;IAC3C,OAAO,GAAG,IAAI,KAAK,KAAK,EAAE,CAAC;AAC7B,CAAC;AAED,MAAM,UAAU,cAAc,CAAC,KAAY,EAAE,KAAoB;IAC/D,MAAM,OAAO,GAAG,KAAK,CAAC,OAAO,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,gBAAgB,CAAC,CAAC;IAC9E,MAAM,IAAI,GAAG,KAAK,CAAC,IAAI,GAAG,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAC,MAAM,CAAC;IAC7D,MAAM,KAAK,GAAG,KAAK,CAAC,KAAK,CAAC;IAC1B,MAAM,GAAG,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,mBAAmB,KAAK,CAAC,GAAG,EAAE,CAAC,CAAC,CAAC,KAAK,CAAC,GAAG,CAAC;IACnE,MAAM,MAAM,GAAG,KAAK,CAAC,MAAM,CAAC,OAAO,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,WAAW,EAAE,GAAG,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;IAE7G,QAAQ,KAAK,EAAE,CAAC;QACd,KAAK,KAAK,CAAC,CAAC,CAAC;YACX,MAAM,gBAAgB,GAAG,gBAAgB,CAAC,OAAO,CAAC,CAAC;YACnD,OAAO,GAAG,gBAAgB,KAAK,IAAI,MAAM,KAAK,KAAK,MAAM,KAAK,GAAG,EAAE,CAAC;QACtE,CAAC;QAED,KAAK,KAAK,CAAC,CAAC,CAAC;YACX,MAAM,WAAW,GAAG,aAAa,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC;YAC9C,MAAM,YAAY,GAAG,OAAO,CAAC,MAAM,GAAG,CAAC;gBACrC,CAAC,CAAC,CAAC,OAAO,CAAC,MAAM,KAAK,CAAC,CAAC,CAAC,CAAC,QAAQ,OAAO,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,UAAU,CAAC;gBAC5D,CAAC,CAAC,EAAE,CAAC;YACP,OAAO,GAAG,WAAW,GAAG,YAAY,MAAM,KAAK,MAAM,MAAM,KAAK,IAAI,KAAK,GAAG,EAAE,CAAC;QACjF,CAAC;QAED,KAAK,SAAS,CAAC,CAAC,CAAC;YACf,MAAM,gBAAgB,GAAG,OAAO,CAAC,MAAM,IAAI,CAAC;gBAC1C,CAAC,CAAC,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC;gBACpB,CAAC,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,GAAG,UAAU,CAAC;YAChD,OAAO,GAAG,gBAAgB,MAAM,KAAK,MAAM,MAAM,KAAK,IAAI,MAAM,GAAG,GAAG,CAAC;QACzE,CAAC;IACH,CAAC;AACH,CAAC"}

package/dist/index.d.ts

@@ -0,0 +1,3 @@
+#!/usr/bin/env node
+export {};
+//# sourceMappingURL=index.d.ts.map

package/dist/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":""}

package/dist/index.js

@@ -0,0 +1,187 @@
+#!/usr/bin/env node
+import { McpServer } from '@modelcontextprotocol/sdk/server/mcp.js';
+import { StdioServerTransport } from '@modelcontextprotocol/sdk/server/stdio.js';
+import { z } from 'zod';
+import { searchPapers } from './search.js';
+import { summarizePaper, mapLiterature, findGaps, buildArgument } from './analysis.js';
+import { formatCitation } from './citations.js';
+const server = new McpServer({
+    name: 'research-rabbit',
+    version: '0.1.0',
+});
+// ─── Tool: search_papers ─────────────────────────────────────────────────────
+server.tool('search_papers', 'Search academic databases (ArXiv, Semantic Scholar, OpenAlex, PubMed) for real papers. Returns verified paper metadata — no hallucinated citations.', {
+    query: z.string().describe('Search query (e.g., "mental health effects social media teenagers")'),
+    sources: z.array(z.enum(['arxiv', 'semantic_scholar', 'openalex', 'pubmed'])).optional().describe('Which databases to search (default: all)'),
+    limit: z.number().min(1).max(25).optional().default(10).describe('Number of papers to return (default: 10, max: 25)'),
+    yearFrom: z.number().optional().describe('Earliest publication year to include'),
+}, async ({ query, sources, limit, yearFrom }) => {
+    const papers = await searchPapers(query, sources ?? ['arxiv', 'semantic_scholar', 'openalex', 'pubmed'], limit ?? 10, yearFrom);
+    return {
+        content: [{
+                type: 'text',
+                text: JSON.stringify({
+                    count: papers.length,
+                    query,
+                    sources: sources ?? ['arxiv', 'semantic_scholar', 'openalex', 'pubmed'],
+                    papers,
+                }, null, 2),
+            }],
+    };
+});
+// ─── Tool: summarize_paper ───────────────────────────────────────────────────
+server.tool('summarize_paper', 'Generate a structured summary of an academic paper from its abstract. Extracts main claim, methodology, key evidence, limitations, and topic relevance.', {
+    paperId: z.string().describe('Paper ID (from search_papers results)'),
+    title: z.string().describe('Paper title'),
+    abstract: z.string().describe('Paper abstract text'),
+    topic: z.string().describe('The research topic the student is working on'),
+}, async ({ paperId, title, abstract, topic }) => {
+    const summary = await summarizePaper(paperId, title, abstract, topic);
+    return {
+        content: [{ type: 'text', text: JSON.stringify(summary, null, 2) }],
+    };
+});
+// ─── Tool: map_literature ────────────────────────────────────────────────────
+server.tool('map_literature', 'Analyze a set of papers to map the state of the literature: consensus, active debates, methodological tensions, and temporal trends.', {
+    papers: z.array(z.object({
+        id: z.string(),
+        source: z.enum(['arxiv', 'semantic_scholar', 'openalex', 'pubmed', 'crossref']),
+        title: z.string(),
+        authors: z.array(z.string()),
+        year: z.number(),
+        abstract: z.string(),
+        citationCount: z.number().optional(),
+        doi: z.string().optional(),
+        url: z.string(),
+        openAccessPdfUrl: z.string().optional(),
+    })).min(2).max(20).describe('Array of Paper objects (from search_papers)'),
+    topic: z.string().describe('The research topic'),
+}, async ({ papers, topic }) => {
+    const map = await mapLiterature(papers, topic);
+    return {
+        content: [{ type: 'text', text: JSON.stringify(map, null, 2) }],
+    };
+});
+// ─── Tool: find_gaps ─────────────────────────────────────────────────────────
+server.tool('find_gaps', 'Identify research gaps and original contribution angles from a set of papers. This is the KEY tool for helping students find where their work can be novel.', {
+    papers: z.array(z.object({
+        id: z.string(),
+        source: z.enum(['arxiv', 'semantic_scholar', 'openalex', 'pubmed', 'crossref']),
+        title: z.string(),
+        authors: z.array(z.string()),
+        year: z.number(),
+        abstract: z.string(),
+        citationCount: z.number().optional(),
+        doi: z.string().optional(),
+        url: z.string(),
+        openAccessPdfUrl: z.string().optional(),
+    })).min(2).max(20).describe('Array of Paper objects'),
+    topic: z.string().describe('The research topic'),
+}, async ({ papers, topic }) => {
+    const gaps = await findGaps(papers, topic);
+    return {
+        content: [{ type: 'text', text: JSON.stringify(gaps, null, 2) }],
+    };
+});
+// ─── Tool: build_argument ────────────────────────────────────────────────────
+server.tool('build_argument', 'Build a structured argument scaffold for a research paper, with evidence assignments from real papers. Identifies missing evidence the student still needs to find.', {
+    topic: z.string().describe('The research topic'),
+    thesis: z.string().describe("The student's thesis statement or argument"),
+    papers: z.array(z.object({
+        id: z.string(),
+        source: z.enum(['arxiv', 'semantic_scholar', 'openalex', 'pubmed', 'crossref']),
+        title: z.string(),
+        authors: z.array(z.string()),
+        year: z.number(),
+        abstract: z.string(),
+        citationCount: z.number().optional(),
+        doi: z.string().optional(),
+        url: z.string(),
+        openAccessPdfUrl: z.string().optional(),
+    })).min(1).describe('Available papers to draw from'),
+}, async ({ topic, thesis, papers }) => {
+    const result = await buildArgument(topic, thesis, papers);
+    return {
+        content: [{ type: 'text', text: JSON.stringify(result, null, 2) }],
+    };
+});
+// ─── Tool: format_citation ───────────────────────────────────────────────────
+server.tool('format_citation', 'Format a paper citation in APA, MLA, or Chicago style. Only formats papers from real API results — never hallucinated.', {
+    paper: z.object({
+        id: z.string(),
+        source: z.enum(['arxiv', 'semantic_scholar', 'openalex', 'pubmed', 'crossref']),
+        title: z.string(),
+        authors: z.array(z.string()),
+        year: z.number(),
+        abstract: z.string(),
+        citationCount: z.number().optional(),
+        doi: z.string().optional(),
+        url: z.string(),
+        openAccessPdfUrl: z.string().optional(),
+    }).describe('Paper object from search_papers results'),
+    style: z.enum(['apa', 'mla', 'chicago']).describe('Citation style'),
+}, async ({ paper, style }) => {
+    const citation = formatCitation(paper, style);
+    return {
+        content: [{ type: 'text', text: citation }],
+    };
+});
+// ─── Tool: search_and_summarize ──────────────────────────────────────────────
+server.tool('search_and_summarize', 'All-in-one research assistant: searches all databases, summarizes top papers, maps the literature, and finds research gaps. The fastest way to go deep on a topic.', {
+    query: z.string().describe('Research topic or question'),
+    depth: z.enum(['quick', 'thorough']).optional().default('quick').describe('"quick" returns top 5 papers with fast analysis; "thorough" returns top 10 with full gap analysis'),
+}, async ({ query, depth }) => {
+    const limit = depth === 'thorough' ? 10 : 5;
+    // Search all sources
+    const papers = await searchPapers(query, ['arxiv', 'semantic_scholar', 'openalex', 'pubmed'], limit);
+    if (papers.length === 0) {
+        return {
+            content: [{
+                    type: 'text',
+                    text: JSON.stringify({
+                        query,
+                        papers: [],
+                        message: 'No papers found. Try different keywords or check your internet connection.',
+                    }, null, 2),
+                }],
+        };
+    }
+    // Summarize all papers (in parallel, with a limit)
+    const papersWithAbstracts = papers.filter(p => p.abstract.length > 50);
+    const summaries = await Promise.all(papersWithAbstracts.slice(0, depth === 'thorough' ? 8 : 5).map(p => summarizePaper(p.id, p.title, p.abstract, query).catch(e => ({
+        paperId: p.id,
+        title: p.title,
+        mainClaim: `Summarization failed: ${e instanceof Error ? e.message : String(e)}`,
+        methodology: 'Unknown',
+        keyEvidence: [],
+        limitations: [],
+        relevanceToTopic: 'Could not assess',
+    }))));
+    // Map literature
+    const literatureMap = papers.length >= 2
+        ? await mapLiterature(papers, query).catch(() => ({ consensus: [], debates: [], methodologicalTensions: [], temporalTrends: [] }))
+        : { consensus: [], debates: [], methodologicalTensions: [], temporalTrends: [] };
+    // Find gaps (thorough mode only or if enough papers)
+    const gaps = (depth === 'thorough' || papers.length >= 5)
+        ? await findGaps(papers, query).catch(() => ({ gaps: [], originalContributionAngles: [] }))
+        : { gaps: [], originalContributionAngles: [] };
+    return {
+        content: [{
+                type: 'text',
+                text: JSON.stringify({
+                    query,
+                    depth,
+                    paperCount: papers.length,
+                    papers,
+                    summaries,
+                    literatureMap,
+                    gaps,
+                }, null, 2),
+            }],
+    };
+});
+// ─── Start server ─────────────────────────────────────────────────────────────
+const transport = new StdioServerTransport();
+await server.connect(transport);
+console.error('Research Rabbit MCP server running on stdio');
+//# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";AACA,OAAO,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AACpE,OAAO,EAAE,oBAAoB,EAAE,MAAM,2CAA2C,CAAC;AACjF,OAAO,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AACxB,OAAO,EAAE,YAAY,EAAE,MAAM,aAAa,CAAC;AAC3C,OAAO,EAAE,cAAc,EAAE,aAAa,EAAE,QAAQ,EAAE,aAAa,EAAE,MAAM,eAAe,CAAC;AACvF,OAAO,EAAE,cAAc,EAAE,MAAM,gBAAgB,CAAC;AAGhD,MAAM,MAAM,GAAG,IAAI,SAAS,CAAC;IAC3B,IAAI,EAAE,iBAAiB;IACvB,OAAO,EAAE,OAAO;CACjB,CAAC,CAAC;AAEH,gFAAgF;AAChF,MAAM,CAAC,IAAI,CACT,eAAe,EACf,qJAAqJ,EACrJ;IACE,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,qEAAqE,CAAC;IACjG,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,OAAO,EAAE,kBAAkB,EAAE,UAAU,EAAE,QAAQ,CAAC,CAAC,CAAC,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,0CAA0C,CAAC;IAC7I,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,QAAQ,EAAE,CAAC,OAAO,CAAC,EAAE,CAAC,CAAC,QAAQ,CAAC,mDAAmD,CAAC;IACrH,QAAQ,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE,CAAC,QAAQ,CAAC,sCAAsC,CAAC;CACjF,EACD,KAAK,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,KAAK,EAAE,QAAQ,EAAE,EAAE,EAAE;IAC5C,MAAM,MAAM,GAAG,MAAM,YAAY,CAC/B,KAAK,EACJ,OAAsC,IAAI,CAAC,OAAO,EAAE,kBAAkB,EAAE,UAAU,EAAE,QAAQ,CAAC,EAC9F,KAAK,IAAI,EAAE,EACX,QAAQ,CACT,CAAC;IAEF,OAAO;QACL,OAAO,EAAE,CAAC;gBACR,IAAI,EAAE,MAAM;gBACZ,IAAI,EAAE,IAAI,CAAC,SAAS,CAAC;oBACnB,KAAK,EAAE,MAAM,CAAC,MAAM;oBACpB,KAAK;oBACL,OAAO,EAAE,OAAO,IAAI,CAAC,OAAO,EAAE,kBAAkB,EAAE,UAAU,EAAE,QAAQ,CAAC;oBACvE,MAAM;iBACP,EAAE,IAAI,EAAE,CAAC,CAAC;aACZ,CAAC;KACH,CAAC;AACJ,CAAC,CACF,CAAC;AAEF,gFAAgF;AAChF,MAAM,CAAC,IAAI,CACT,iBAAiB,EACjB,yJAAyJ,EACzJ;IACE,OAAO,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,uCAAuC,CAAC;IACrE,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,aAAa,CAAC;IACzC,QAAQ,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,qBAAqB,CAAC;IACpD,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,8CAA8C,CAAC;CAC3E,EACD,KAAK,EAAE,EAAE,OAAO,EAAE,KAAK,EAAE,QAAQ,EAAE,KAAK,EAAE,EAAE,EAAE;IAC5C,MAAM,OAAO,GAAG,MAAM,cAAc,CAAC,OAAO,EAAE,KAAK,EAAE,QAAQ,EAAE,KAAK,CAAC,CAAC;IACtE,OAAO;QACL,OAAO,EAAE,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,IAAI,CAAC,SAAS,CAAC,OAAO,EAAE,IAAI,EAAE,CAAC,CAAC,EAAE,CAAC;KACpE,CAAC;AACJ,CAAC,CACF,CAAC;AAEF,gFAAgF;AAChF,MAAM,CAAC,IAAI,CACT,gBAAgB,EAChB,sIAAsI,EACtI;IACE,MAAM,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,CAAC;QACvB,EAAE,EAAE,CAAC,CAAC,MAAM,EAAE;QACd,MAAM,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,OAAO,EAAE,kBAAkB,EAAE,UAAU,EAAE,QAAQ,EAAE,UAAU,CAAC,CAAC;QAC/E,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE;QACjB,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC;QAC5B,IAAI,EAAE,CAAC,CAAC,MAAM,EAAE;QAChB,QAAQ,EAAE,CAAC,CAAC,MAAM,EAAE;QACpB,aAAa,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE;QACpC,GAAG,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE;QAC1B,GAAG,EAAE,CAAC,CAAC,MAAM,EAAE;QACf,gBAAgB,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE;KACxC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,QAAQ,CAAC,6CAA6C,CAAC;IAC1E,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,oBAAoB,CAAC;CACjD,EACD,KAAK,EAAE,EAAE,MAAM,EAAE,KAAK,EAAE,EAAE,EAAE;IAC1B,MAAM,GAAG,GAAG,MAAM,aAAa,CAAC,MAAiB,EAAE,KAAK,CAAC,CAAC;IAC1D,OAAO;QACL,OAAO,EAAE,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,IAAI,CAAC,SAAS,CAAC,GAAG,EAAE,IAAI,EAAE,CAAC,CAAC,EAAE,CAAC;KAChE,CAAC;AACJ,CAAC,CACF,CAAC;AAEF,gFAAgF;AAChF,MAAM,CAAC,IAAI,CACT,WAAW,EACX,6JAA6J,EAC7J;IACE,MAAM,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,CAAC;QACvB,EAAE,EAAE,CAAC,CAAC,MAAM,EAAE;QACd,MAAM,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,OAAO,EAAE,kBAAkB,EAAE,UAAU,EAAE,QAAQ,EAAE,UAAU,CAAC,CAAC;QAC/E,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE;QACjB,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC;QAC5B,IAAI,EAAE,CAAC,CAAC,MAAM,EAAE;QAChB,QAAQ,EAAE,CAAC,CAAC,MAAM,EAAE;QACpB,aAAa,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE;QACpC,GAAG,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE;QAC1B,GAAG,EAAE,CAAC,CAAC,MAAM,EAAE;QACf,gBAAgB,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE;KACxC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,QAAQ,CAAC,wBAAwB,CAAC;IACrD,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,oBAAoB,CAAC;CACjD,EACD,KAAK,EAAE,EAAE,MAAM,EAAE,KAAK,EAAE,EAAE,EAAE;IAC1B,MAAM,IAAI,GAAG,MAAM,QAAQ,CAAC,MAAiB,EAAE,KAAK,CAAC,CAAC;IACtD,OAAO;QACL,OAAO,EAAE,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,IAAI,CAAC,SAAS,CAAC,IAAI,EAAE,IAAI,EAAE,CAAC,CAAC,EAAE,CAAC;KACjE,CAAC;AACJ,CAAC,CACF,CAAC;AAEF,gFAAgF;AAChF,MAAM,CAAC,IAAI,CACT,gBAAgB,EAChB,qKAAqK,EACrK;IACE,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,oBAAoB,CAAC;IAChD,MAAM,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,4CAA4C,CAAC;IACzE,MAAM,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,CAAC;QACvB,EAAE,EAAE,CAAC,CAAC,MAAM,EAAE;QACd,MAAM,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,OAAO,EAAE,kBAAkB,EAAE,UAAU,EAAE,QAAQ,EAAE,UAAU,CAAC,CAAC;QAC/E,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE;QACjB,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC;QAC5B,IAAI,EAAE,CAAC,CAAC,MAAM,EAAE;QAChB,QAAQ,EAAE,CAAC,CAAC,MAAM,EAAE;QACpB,aAAa,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE;QACpC,GAAG,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE;QAC1B,GAAG,EAAE,CAAC,CAAC,MAAM,EAAE;QACf,gBAAgB,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE;KACxC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,+BAA+B,CAAC;CACrD,EACD,KAAK,EAAE,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,EAAE,EAAE,EAAE;IAClC,MAAM,MAAM,GAAG,MAAM,aAAa,CAAC,KAAK,EAAE,MAAM,EAAE,MAAiB,CAAC,CAAC;IACrE,OAAO;QACL,OAAO,EAAE,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,IAAI,CAAC,SAAS,CAAC,MAAM,EAAE,IAAI,EAAE,CAAC,CAAC,EAAE,CAAC;KACnE,CAAC;AACJ,CAAC,CACF,CAAC;AAEF,gFAAgF;AAChF,MAAM,CAAC,IAAI,CACT,iBAAiB,EACjB,wHAAwH,EACxH;IACE,KAAK,EAAE,CAAC,CAAC,MAAM,CAAC;QACd,EAAE,EAAE,CAAC,CAAC,MAAM,EAAE;QACd,MAAM,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,OAAO,EAAE,kBAAkB,EAAE,UAAU,EAAE,QAAQ,EAAE,UAAU,CAAC,CAAC;QAC/E,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE;QACjB,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,EAAE,CAAC;QAC5B,IAAI,EAAE,CAAC,CAAC,MAAM,EAAE;QAChB,QAAQ,EAAE,CAAC,CAAC,MAAM,EAAE;QACpB,aAAa,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE;QACpC,GAAG,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE;QAC1B,GAAG,EAAE,CAAC,CAAC,MAAM,EAAE;QACf,gBAAgB,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,EAAE;KACxC,CAAC,CAAC,QAAQ,CAAC,yCAAyC,CAAC;IACtD,KAAK,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,KAAK,EAAE,KAAK,EAAE,SAAS,CAAC,CAAC,CAAC,QAAQ,CAAC,gBAAgB,CAAC;CACpE,EACD,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,EAAE,EAAE;IACzB,MAAM,QAAQ,GAAG,cAAc,CAAC,KAAc,EAAE,KAAsB,CAAC,CAAC;IACxE,OAAO;QACL,OAAO,EAAE,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,QAAQ,EAAE,CAAC;KAC5C,CAAC;AACJ,CAAC,CACF,CAAC;AAEF,gFAAgF;AAChF,MAAM,CAAC,IAAI,CACT,sBAAsB,EACtB,oKAAoK,EACpK;IACE,KAAK,EAAE,CAAC,CAAC,MAAM,EAAE,CAAC,QAAQ,CAAC,4BAA4B,CAAC;IACxD,KAAK,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC,OAAO,EAAE,UAAU,CAAC,CAAC,CAAC,QAAQ,EAAE,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC,QAAQ,CAAC,mGAAmG,CAAC;CAC/K,EACD,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,EAAE,EAAE;IACzB,MAAM,KAAK,GAAG,KAAK,KAAK,UAAU,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;IAE5C,qBAAqB;IACrB,MAAM,MAAM,GAAG,MAAM,YAAY,CAAC,KAAK,EAAE,CAAC,OAAO,EAAE,kBAAkB,EAAE,UAAU,EAAE,QAAQ,CAAC,EAAE,KAAK,CAAC,CAAC;IAErG,IAAI,MAAM,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;QACxB,OAAO;YACL,OAAO,EAAE,CAAC;oBACR,IAAI,EAAE,MAAM;oBACZ,IAAI,EAAE,IAAI,CAAC,SAAS,CAAC;wBACnB,KAAK;wBACL,MAAM,EAAE,EAAE;wBACV,OAAO,EAAE,4EAA4E;qBACtF,EAAE,IAAI,EAAE,CAAC,CAAC;iBACZ,CAAC;SACH,CAAC;IACJ,CAAC;IAED,mDAAmD;IACnD,MAAM,mBAAmB,GAAG,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,CAAC,MAAM,GAAG,EAAE,CAAC,CAAC;IACvE,MAAM,SAAS,GAAG,MAAM,OAAO,CAAC,GAAG,CACjC,mBAAmB,CAAC,KAAK,CAAC,CAAC,EAAE,KAAK,KAAK,UAAU,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CACjE,cAAc,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,KAAK,EAAE,CAAC,CAAC,QAAQ,EAAE,KAAK,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;QAC3D,OAAO,EAAE,CAAC,CAAC,EAAE;QACb,KAAK,EAAE,CAAC,CAAC,KAAK;QACd,SAAS,EAAE,yBAAyB,CAAC,YAAY,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE;QAChF,WAAW,EAAE,SAAS;QACtB,WAAW,EAAE,EAAE;QACf,WAAW,EAAE,EAAE;QACf,gBAAgB,EAAE,kBAAkB;KACrC,CAAC,CAAC,CACJ,CACF,CAAC;IAEF,iBAAiB;IACjB,MAAM,aAAa,GAAG,MAAM,CAAC,MAAM,IAAI,CAAC;QACtC,CAAC,CAAC,MAAM,aAAa,CAAC,MAAM,EAAE,KAAK,CAAC,CAAC,KAAK,CAAC,GAAG,EAAE,CAAC,CAAC,EAAE,SAAS,EAAE,EAAE,EAAE,OAAO,EAAE,EAAE,EAAE,sBAAsB,EAAE,EAAE,EAAE,cAAc,EAAE,EAAE,EAAE,CAAC,CAAC;QAClI,CAAC,CAAC,EAAE,SAAS,EAAE,EAAE,EAAE,OAAO,EAAE,EAAE,EAAE,sBAAsB,EAAE,EAAE,EAAE,cAAc,EAAE,EAAE,EAAE,CAAC;IAEnF,qDAAqD;IACrD,MAAM,IAAI,GAAG,CAAC,KAAK,KAAK,UAAU,IAAI,MAAM,CAAC,MAAM,IAAI,CAAC,CAAC;QACvD,CAAC,CAAC,MAAM,QAAQ,CAAC,MAAM,EAAE,KAAK,CAAC,CAAC,KAAK,CAAC,GAAG,EAAE,CAAC,CAAC,EAAE,IAAI,EAAE,EAAE,EAAE,0BAA0B,EAAE,EAAE,EAAE,CAAC,CAAC;QAC3F,CAAC,CAAC,EAAE,IAAI,EAAE,EAAE,EAAE,0BAA0B,EAAE,EAAE,EAAE,CAAC;IAEjD,OAAO;QACL,OAAO,EAAE,CAAC;gBACR,IAAI,EAAE,MAAM;gBACZ,IAAI,EAAE,IAAI,CAAC,SAAS,CAAC;oBACnB,KAAK;oBACL,KAAK;oBACL,UAAU,EAAE,MAAM,CAAC,MAAM;oBACzB,MAAM;oBACN,SAAS;oBACT,aAAa;oBACb,IAAI;iBACL,EAAE,IAAI,EAAE,CAAC,CAAC;aACZ,CAAC;KACH,CAAC;AACJ,CAAC,CACF,CAAC;AAEF,iFAAiF;AACjF,MAAM,SAAS,GAAG,IAAI,oBAAoB,EAAE,CAAC;AAC7C,MAAM,MAAM,CAAC,OAAO,CAAC,SAAS,CAAC,CAAC;AAChC,OAAO,CAAC,KAAK,CAAC,6CAA6C,CAAC,CAAC"}

package/dist/search.d.ts

@@ -0,0 +1,3 @@
+import type { Paper, SearchSource } from './types.js';
+export declare function searchPapers(query: string, sources?: SearchSource[], limit?: number, yearFrom?: number): Promise<Paper[]>;
+//# sourceMappingURL=search.d.ts.map

package/dist/search.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"search.d.ts","sourceRoot":"","sources":["../src/search.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,KAAK,EAAE,YAAY,EAAE,MAAM,YAAY,CAAC;AAwCtD,wBAAsB,YAAY,CAChC,KAAK,EAAE,MAAM,EACb,OAAO,GAAE,YAAY,EAAwD,EAC7E,KAAK,GAAE,MAAW,EAClB,QAAQ,CAAC,EAAE,MAAM,GAChB,OAAO,CAAC,KAAK,EAAE,CAAC,CA+BlB"}

package/dist/search.js

@@ -0,0 +1,61 @@
+import { searchArxiv } from './sources/arxiv.js';
+import { searchSemanticScholar } from './sources/semantic_scholar.js';
+import { searchOpenAlex } from './sources/openalex.js';
+import { searchPubMed } from './sources/pubmed.js';
+function normalizeTitle(title) {
+    return title.toLowerCase().replace(/[^a-z0-9]/g, '').substring(0, 50);
+}
+function deduplicatePapers(papers) {
+    const seen = new Map();
+    for (const paper of papers) {
+        const key = normalizeTitle(paper.title);
+        if (!seen.has(key)) {
+            seen.set(key, paper);
+        }
+        else {
+            // Prefer paper with more data (citation count, abstract)
+            const existing = seen.get(key);
+            if ((paper.citationCount ?? 0) > (existing.citationCount ?? 0) ||
+                (paper.abstract.length > existing.abstract.length)) {
+                seen.set(key, { ...paper, id: existing.id }); // keep original id
+            }
+        }
+    }
+    return Array.from(seen.values());
+}
+function rankPapers(papers) {
+    return papers.sort((a, b) => {
+        // Score: citation count (normalized) + recency bonus
+        const currentYear = new Date().getFullYear();
+        const scoreA = (a.citationCount ?? 0) * 0.001 + Math.max(0, a.year - (currentYear - 10));
+        const scoreB = (b.citationCount ?? 0) * 0.001 + Math.max(0, b.year - (currentYear - 10));
+        return scoreB - scoreA;
+    });
+}
+export async function searchPapers(query, sources = ['arxiv', 'semantic_scholar', 'openalex', 'pubmed'], limit = 10, yearFrom) {
+    const perSourceLimit = Math.ceil(limit * 1.5); // fetch extra to account for dedup
+    const searchPromises = [];
+    if (sources.includes('arxiv')) {
+        searchPromises.push(searchArxiv(query, perSourceLimit, yearFrom));
+    }
+    if (sources.includes('semantic_scholar')) {
+        searchPromises.push(searchSemanticScholar(query, perSourceLimit, yearFrom));
+    }
+    if (sources.includes('openalex')) {
+        searchPromises.push(searchOpenAlex(query, perSourceLimit, yearFrom));
+    }
+    if (sources.includes('pubmed')) {
+        searchPromises.push(searchPubMed(query, perSourceLimit, yearFrom));
+    }
+    const results = await Promise.allSettled(searchPromises);
+    const allPapers = [];
+    for (const result of results) {
+        if (result.status === 'fulfilled') {
+            allPapers.push(...result.value);
+        }
+    }
+    const deduplicated = deduplicatePapers(allPapers);
+    const ranked = rankPapers(deduplicated);
+    return ranked.slice(0, limit);
+}
+//# sourceMappingURL=search.js.map

package/dist/search.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"search.js","sourceRoot":"","sources":["../src/search.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,WAAW,EAAE,MAAM,oBAAoB,CAAC;AACjD,OAAO,EAAE,qBAAqB,EAAE,MAAM,+BAA+B,CAAC;AACtE,OAAO,EAAE,cAAc,EAAE,MAAM,uBAAuB,CAAC;AACvD,OAAO,EAAE,YAAY,EAAE,MAAM,qBAAqB,CAAC;AAEnD,SAAS,cAAc,CAAC,KAAa;IACnC,OAAO,KAAK,CAAC,WAAW,EAAE,CAAC,OAAO,CAAC,YAAY,EAAE,EAAE,CAAC,CAAC,SAAS,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC;AACxE,CAAC;AAED,SAAS,iBAAiB,CAAC,MAAe;IACxC,MAAM,IAAI,GAAG,IAAI,GAAG,EAAiB,CAAC;IAEtC,KAAK,MAAM,KAAK,IAAI,MAAM,EAAE,CAAC;QAC3B,MAAM,GAAG,GAAG,cAAc,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC;QACxC,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC;YACnB,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,KAAK,CAAC,CAAC;QACvB,CAAC;aAAM,CAAC;YACN,yDAAyD;YACzD,MAAM,QAAQ,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,CAAE,CAAC;YAChC,IAAI,CAAC,KAAK,CAAC,aAAa,IAAI,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,aAAa,IAAI,CAAC,CAAC;gBAC1D,CAAC,KAAK,CAAC,QAAQ,CAAC,MAAM,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,CAAC,EAAE,CAAC;gBACvD,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,EAAE,GAAG,KAAK,EAAE,EAAE,EAAE,QAAQ,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,mBAAmB;YACnE,CAAC;QACH,CAAC;IACH,CAAC;IAED,OAAO,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC,CAAC;AACnC,CAAC;AAED,SAAS,UAAU,CAAC,MAAe;IACjC,OAAO,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE;QAC1B,qDAAqD;QACrD,MAAM,WAAW,GAAG,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE,CAAC;QAC7C,MAAM,MAAM,GAAG,CAAC,CAAC,CAAC,aAAa,IAAI,CAAC,CAAC,GAAG,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,IAAI,GAAG,CAAC,WAAW,GAAG,EAAE,CAAC,CAAC,CAAC;QACzF,MAAM,MAAM,GAAG,CAAC,CAAC,CAAC,aAAa,IAAI,CAAC,CAAC,GAAG,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,IAAI,GAAG,CAAC,WAAW,GAAG,EAAE,CAAC,CAAC,CAAC;QACzF,OAAO,MAAM,GAAG,MAAM,CAAC;IACzB,CAAC,CAAC,CAAC;AACL,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,YAAY,CAChC,KAAa,EACb,UAA0B,CAAC,OAAO,EAAE,kBAAkB,EAAE,UAAU,EAAE,QAAQ,CAAC,EAC7E,QAAgB,EAAE,EAClB,QAAiB;IAEjB,MAAM,cAAc,GAAG,IAAI,CAAC,IAAI,CAAC,KAAK,GAAG,GAAG,CAAC,CAAC,CAAC,mCAAmC;IAElF,MAAM,cAAc,GAAuB,EAAE,CAAC;IAE9C,IAAI,OAAO,CAAC,QAAQ,CAAC,OAAO,CAAC,EAAE,CAAC;QAC9B,cAAc,CAAC,IAAI,CAAC,WAAW,CAAC,KAAK,EAAE,cAAc,EAAE,QAAQ,CAAC,CAAC,CAAC;IACpE,CAAC;IACD,IAAI,OAAO,CAAC,QAAQ,CAAC,kBAAkB,CAAC,EAAE,CAAC;QACzC,cAAc,CAAC,IAAI,CAAC,qBAAqB,CAAC,KAAK,EAAE,cAAc,EAAE,QAAQ,CAAC,CAAC,CAAC;IAC9E,CAAC;IACD,IAAI,OAAO,CAAC,QAAQ,CAAC,UAAU,CAAC,EAAE,CAAC;QACjC,cAAc,CAAC,IAAI,CAAC,cAAc,CAAC,KAAK,EAAE,cAAc,EAAE,QAAQ,CAAC,CAAC,CAAC;IACvE,CAAC;IACD,IAAI,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAC,EAAE,CAAC;QAC/B,cAAc,CAAC,IAAI,CAAC,YAAY,CAAC,KAAK,EAAE,cAAc,EAAE,QAAQ,CAAC,CAAC,CAAC;IACrE,CAAC;IAED,MAAM,OAAO,GAAG,MAAM,OAAO,CAAC,UAAU,CAAC,cAAc,CAAC,CAAC;IACzD,MAAM,SAAS,GAAY,EAAE,CAAC;IAE9B,KAAK,MAAM,MAAM,IAAI,OAAO,EAAE,CAAC;QAC7B,IAAI,MAAM,CAAC,MAAM,KAAK,WAAW,EAAE,CAAC;YAClC,SAAS,CAAC,IAAI,CAAC,GAAG,MAAM,CAAC,KAAK,CAAC,CAAC;QAClC,CAAC;IACH,CAAC;IAED,MAAM,YAAY,GAAG,iBAAiB,CAAC,SAAS,CAAC,CAAC;IAClD,MAAM,MAAM,GAAG,UAAU,CAAC,YAAY,CAAC,CAAC;IAExC,OAAO,MAAM,CAAC,KAAK,CAAC,CAAC,EAAE,KAAK,CAAC,CAAC;AAChC,CAAC"}

package/dist/sources/arxiv.d.ts

@@ -0,0 +1,3 @@
+import type { Paper } from '../types.js';
+export declare function searchArxiv(query: string, limit?: number, yearFrom?: number): Promise<Paper[]>;
+//# sourceMappingURL=arxiv.d.ts.map

package/dist/sources/arxiv.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"arxiv.d.ts","sourceRoot":"","sources":["../../src/sources/arxiv.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,aAAa,CAAC;AAyCzC,wBAAsB,WAAW,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,GAAE,MAAW,EAAE,QAAQ,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,KAAK,EAAE,CAAC,CAqBxG"}

package/dist/sources/arxiv.js

@@ -0,0 +1,51 @@
+function parseArxivXml(xml) {
+    const papers = [];
+    // Extract entries using regex (avoid XML parser dependency)
+    const entryMatches = xml.matchAll(/<entry>([\s\S]*?)<\/entry>/g);
+    for (const match of entryMatches) {
+        const entry = match[1];
+        const titleMatch = entry.match(/<title>([\s\S]*?)<\/title>/);
+        const abstractMatch = entry.match(/<summary>([\s\S]*?)<\/summary>/);
+        const publishedMatch = entry.match(/<published>([\s\S]*?)<\/published>/);
+        const idMatch = entry.match(/<id>([\s\S]*?)<\/id>/);
+        const authorMatches = [...entry.matchAll(/<name>([\s\S]*?)<\/name>/g)];
+        if (!titleMatch || !idMatch)
+            continue;
+        const arxivId = idMatch[1].trim().replace('http://arxiv.org/abs/', '');
+        const year = publishedMatch ? parseInt(publishedMatch[1].substring(0, 4)) : 0;
+        // Find PDF link
+        const pdfLinkMatch = entry.match(/href="(https?:\/\/arxiv\.org\/pdf\/[^"]+)"/);
+        papers.push({
+            id: `arxiv:${arxivId}`,
+            source: 'arxiv',
+            title: titleMatch[1].trim().replace(/\s+/g, ' '),
+            authors: authorMatches.map(m => m[1].trim()),
+            year,
+            abstract: abstractMatch ? abstractMatch[1].trim().replace(/\s+/g, ' ') : '',
+            url: `https://arxiv.org/abs/${arxivId}`,
+            openAccessPdfUrl: pdfLinkMatch ? pdfLinkMatch[1] : `https://arxiv.org/pdf/${arxivId}`,
+        });
+    }
+    return papers;
+}
+export async function searchArxiv(query, limit = 10, yearFrom) {
+    const searchQuery = yearFrom
+        ? `${query} AND submittedDate:[${yearFrom}0101 TO 99991231]`
+        : query;
+    const url = `http://export.arxiv.org/api/query?search_query=all:${encodeURIComponent(searchQuery)}&max_results=${limit}&sortBy=relevance`;
+    try {
+        const response = await fetch(url, {
+            headers: { 'User-Agent': 'research-rabbit/0.1.0 (academic research tool)' },
+            signal: AbortSignal.timeout(15000),
+        });
+        if (!response.ok)
+            throw new Error(`ArXiv API error: ${response.status}`);
+        const xml = await response.text();
+        return parseArxivXml(xml);
+    }
+    catch (error) {
+        console.error('ArXiv search failed:', error instanceof Error ? error.message : error);
+        return [];
+    }
+}
+//# sourceMappingURL=arxiv.js.map

package/dist/sources/arxiv.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"arxiv.js","sourceRoot":"","sources":["../../src/sources/arxiv.ts"],"names":[],"mappings":"AAEA,SAAS,aAAa,CAAC,GAAW;IAChC,MAAM,MAAM,GAAY,EAAE,CAAC;IAE3B,4DAA4D;IAC5D,MAAM,YAAY,GAAG,GAAG,CAAC,QAAQ,CAAC,6BAA6B,CAAC,CAAC;IAEjE,KAAK,MAAM,KAAK,IAAI,YAAY,EAAE,CAAC;QACjC,MAAM,KAAK,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC;QAEvB,MAAM,UAAU,GAAG,KAAK,CAAC,KAAK,CAAC,4BAA4B,CAAC,CAAC;QAC7D,MAAM,aAAa,GAAG,KAAK,CAAC,KAAK,CAAC,gCAAgC,CAAC,CAAC;QACpE,MAAM,cAAc,GAAG,KAAK,CAAC,KAAK,CAAC,oCAAoC,CAAC,CAAC;QACzE,MAAM,OAAO,GAAG,KAAK,CAAC,KAAK,CAAC,sBAAsB,CAAC,CAAC;QAEpD,MAAM,aAAa,GAAG,CAAC,GAAG,KAAK,CAAC,QAAQ,CAAC,2BAA2B,CAAC,CAAC,CAAC;QAEvE,IAAI,CAAC,UAAU,IAAI,CAAC,OAAO;YAAE,SAAS;QAEtC,MAAM,OAAO,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,OAAO,CAAC,uBAAuB,EAAE,EAAE,CAAC,CAAC;QACvE,MAAM,IAAI,GAAG,cAAc,CAAC,CAAC,CAAC,QAAQ,CAAC,cAAc,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QAE9E,gBAAgB;QAChB,MAAM,YAAY,GAAG,KAAK,CAAC,KAAK,CAAC,4CAA4C,CAAC,CAAC;QAE/E,MAAM,CAAC,IAAI,CAAC;YACV,EAAE,EAAE,SAAS,OAAO,EAAE;YACtB,MAAM,EAAE,OAAO;YACf,KAAK,EAAE,UAAU,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,OAAO,CAAC,MAAM,EAAE,GAAG,CAAC;YAChD,OAAO,EAAE,aAAa,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;YAC5C,IAAI;YACJ,QAAQ,EAAE,aAAa,CAAC,CAAC,CAAC,aAAa,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,OAAO,CAAC,MAAM,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE;YAC3E,GAAG,EAAE,yBAAyB,OAAO,EAAE;YACvC,gBAAgB,EAAE,YAAY,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,yBAAyB,OAAO,EAAE;SACtF,CAAC,CAAC;IACL,CAAC;IAED,OAAO,MAAM,CAAC;AAChB,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,WAAW,CAAC,KAAa,EAAE,QAAgB,EAAE,EAAE,QAAiB;IACpF,MAAM,WAAW,GAAG,QAAQ;QAC1B,CAAC,CAAC,GAAG,KAAK,uBAAuB,QAAQ,mBAAmB;QAC5D,CAAC,CAAC,KAAK,CAAC;IAEV,MAAM,GAAG,GAAG,sDAAsD,kBAAkB,CAAC,WAAW,CAAC,gBAAgB,KAAK,mBAAmB,CAAC;IAE1I,IAAI,CAAC;QACH,MAAM,QAAQ,GAAG,MAAM,KAAK,CAAC,GAAG,EAAE;YAChC,OAAO,EAAE,EAAE,YAAY,EAAE,gDAAgD,EAAE;YAC3E,MAAM,EAAE,WAAW,CAAC,OAAO,CAAC,KAAK,CAAC;SACnC,CAAC,CAAC;QAEH,IAAI,CAAC,QAAQ,CAAC,EAAE;YAAE,MAAM,IAAI,KAAK,CAAC,oBAAoB,QAAQ,CAAC,MAAM,EAAE,CAAC,CAAC;QAEzE,MAAM,GAAG,GAAG,MAAM,QAAQ,CAAC,IAAI,EAAE,CAAC;QAClC,OAAO,aAAa,CAAC,GAAG,CAAC,CAAC;IAC5B,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,OAAO,CAAC,KAAK,CAAC,sBAAsB,EAAE,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC;QACtF,OAAO,EAAE,CAAC;IACZ,CAAC;AACH,CAAC"}

package/dist/sources/openalex.d.ts

@@ -0,0 +1,3 @@
+import type { Paper } from '../types.js';
+export declare function searchOpenAlex(query: string, limit?: number, yearFrom?: number): Promise<Paper[]>;
+//# sourceMappingURL=openalex.d.ts.map

package/dist/sources/openalex.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"openalex.d.ts","sourceRoot":"","sources":["../../src/sources/openalex.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,aAAa,CAAC;AAuBzC,wBAAsB,cAAc,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,GAAE,MAAW,EAAE,QAAQ,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,KAAK,EAAE,CAAC,CAmC3G"}

package/dist/sources/openalex.js

@@ -0,0 +1,47 @@
+function reconstructAbstract(invertedIndex) {
+    if (!invertedIndex)
+        return '';
+    const words = [];
+    for (const [word, positions] of Object.entries(invertedIndex)) {
+        for (const pos of positions)
+            words.push([word, pos]);
+    }
+    words.sort((a, b) => a[1] - b[1]);
+    return words.map(w => w[0]).join(' ');
+}
+export async function searchOpenAlex(query, limit = 10, yearFrom) {
+    let url = `https://api.openalex.org/works?search=${encodeURIComponent(query)}&per-page=${limit}&select=id,title,authorships,publication_year,abstract_inverted_index,cited_by_count,doi,best_oa_location`;
+    if (yearFrom)
+        url += `&filter=publication_year:>${yearFrom - 1}`;
+    try {
+        const response = await fetch(url, {
+            headers: {
+                'User-Agent': 'research-rabbit/0.1.0 (academic research tool; mailto:research@example.com)',
+            },
+            signal: AbortSignal.timeout(15000),
+        });
+        if (!response.ok)
+            throw new Error(`OpenAlex API error: ${response.status}`);
+        const data = await response.json();
+        return (data.results || []).map(w => {
+            const openAlexId = w.id.replace('https://openalex.org/', '');
+            return {
+                id: `openalex:${openAlexId}`,
+                source: 'openalex',
+                title: w.title || '',
+                authors: (w.authorships || []).map(a => a.author.display_name),
+                year: w.publication_year || 0,
+                abstract: reconstructAbstract(w.abstract_inverted_index),
+                citationCount: w.cited_by_count,
+                doi: w.doi?.replace('https://doi.org/', ''),
+                url: w.doi ? `https://doi.org/${w.doi.replace('https://doi.org/', '')}` : `https://openalex.org/${openAlexId}`,
+                openAccessPdfUrl: w.best_oa_location?.pdf_url ?? undefined,
+            };
+        });
+    }
+    catch (error) {
+        console.error('OpenAlex search failed:', error instanceof Error ? error.message : error);
+        return [];
+    }
+}
+//# sourceMappingURL=openalex.js.map

package/dist/sources/openalex.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"openalex.js","sourceRoot":"","sources":["../../src/sources/openalex.ts"],"names":[],"mappings":"AAaA,SAAS,mBAAmB,CAAC,aAA8C;IACzE,IAAI,CAAC,aAAa;QAAE,OAAO,EAAE,CAAC;IAC9B,MAAM,KAAK,GAAuB,EAAE,CAAC;IACrC,KAAK,MAAM,CAAC,IAAI,EAAE,SAAS,CAAC,IAAI,MAAM,CAAC,OAAO,CAAC,aAAa,CAAC,EAAE,CAAC;QAC9D,KAAK,MAAM,GAAG,IAAI,SAAS;YAAE,KAAK,CAAC,IAAI,CAAC,CAAC,IAAI,EAAE,GAAG,CAAC,CAAC,CAAC;IACvD,CAAC;IACD,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;IAClC,OAAO,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;AACxC,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,cAAc,CAAC,KAAa,EAAE,QAAgB,EAAE,EAAE,QAAiB;IACvF,IAAI,GAAG,GAAG,yCAAyC,kBAAkB,CAAC,KAAK,CAAC,aAAa,KAAK,2GAA2G,CAAC;IAC1M,IAAI,QAAQ;QAAE,GAAG,IAAI,6BAA6B,QAAQ,GAAG,CAAC,EAAE,CAAC;IAEjE,IAAI,CAAC;QACH,MAAM,QAAQ,GAAG,MAAM,KAAK,CAAC,GAAG,EAAE;YAChC,OAAO,EAAE;gBACP,YAAY,EAAE,6EAA6E;aAC5F;YACD,MAAM,EAAE,WAAW,CAAC,OAAO,CAAC,KAAK,CAAC;SACnC,CAAC,CAAC;QAEH,IAAI,CAAC,QAAQ,CAAC,EAAE;YAAE,MAAM,IAAI,KAAK,CAAC,uBAAuB,QAAQ,CAAC,MAAM,EAAE,CAAC,CAAC;QAE5E,MAAM,IAAI,GAAG,MAAM,QAAQ,CAAC,IAAI,EAAiC,CAAC;QAElE,OAAO,CAAC,IAAI,CAAC,OAAO,IAAI,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE;YAClC,MAAM,UAAU,GAAG,CAAC,CAAC,EAAE,CAAC,OAAO,CAAC,uBAAuB,EAAE,EAAE,CAAC,CAAC;YAC7D,OAAO;gBACL,EAAE,EAAE,YAAY,UAAU,EAAE;gBAC5B,MAAM,EAAE,UAAmB;gBAC3B,KAAK,EAAE,CAAC,CAAC,KAAK,IAAI,EAAE;gBACpB,OAAO,EAAE,CAAC,CAAC,CAAC,WAAW,IAAI,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,MAAM,CAAC,YAAY,CAAC;gBAC9D,IAAI,EAAE,CAAC,CAAC,gBAAgB,IAAI,CAAC;gBAC7B,QAAQ,EAAE,mBAAmB,CAAC,CAAC,CAAC,uBAAuB,CAAC;gBACxD,aAAa,EAAE,CAAC,CAAC,cAAc;gBAC/B,GAAG,EAAE,CAAC,CAAC,GAAG,EAAE,OAAO,CAAC,kBAAkB,EAAE,EAAE,CAAC;gBAC3C,GAAG,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,mBAAmB,CAAC,CAAC,GAAG,CAAC,OAAO,CAAC,kBAAkB,EAAE,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,wBAAwB,UAAU,EAAE;gBAC9G,gBAAgB,EAAE,CAAC,CAAC,gBAAgB,EAAE,OAAO,IAAI,SAAS;aAC3D,CAAC;QACJ,CAAC,CAAC,CAAC;IACL,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,OAAO,CAAC,KAAK,CAAC,yBAAyB,EAAE,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC;QACzF,OAAO,EAAE,CAAC;IACZ,CAAC;AACH,CAAC"}

package/dist/sources/pubmed.d.ts

@@ -0,0 +1,3 @@
+import type { Paper } from '../types.js';
+export declare function searchPubMed(query: string, limit?: number, yearFrom?: number): Promise<Paper[]>;
+//# sourceMappingURL=pubmed.d.ts.map

package/dist/sources/pubmed.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"pubmed.d.ts","sourceRoot":"","sources":["../../src/sources/pubmed.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,aAAa,CAAC;AAEzC,wBAAsB,YAAY,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,GAAE,MAAW,EAAE,QAAQ,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,KAAK,EAAE,CAAC,CAiFzG"}

package/dist/sources/pubmed.js

@@ -0,0 +1,68 @@
+export async function searchPubMed(query, limit = 10, yearFrom) {
+    const searchTerm = yearFrom ? `${query} AND ${yearFrom}:3000[pdat]` : query;
+    // Step 1: Search for IDs
+    const searchUrl = `https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pubmed&term=${encodeURIComponent(searchTerm)}&retmax=${limit}&retmode=json`;
+    try {
+        const searchResp = await fetch(searchUrl, {
+            headers: { 'User-Agent': 'research-rabbit/0.1.0 (academic research tool)' },
+            signal: AbortSignal.timeout(15000),
+        });
+        if (!searchResp.ok)
+            throw new Error(`PubMed search error: ${searchResp.status}`);
+        const searchData = await searchResp.json();
+        const ids = searchData.esearchresult?.idlist || [];
+        if (ids.length === 0)
+            return [];
+        // Step 2: Fetch summaries
+        const summaryUrl = `https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&id=${ids.join(',')}&retmode=json`;
+        const summaryResp = await fetch(summaryUrl, {
+            headers: { 'User-Agent': 'research-rabbit/0.1.0 (academic research tool)' },
+            signal: AbortSignal.timeout(15000),
+        });
+        if (!summaryResp.ok)
+            throw new Error(`PubMed summary error: ${summaryResp.status}`);
+        const summaryData = await summaryResp.json();
+        // Step 3: Fetch abstracts (efetch)
+        const fetchUrl = `https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pubmed&id=${ids.join(',')}&retmode=xml&rettype=abstract`;
+        const fetchResp = await fetch(fetchUrl, {
+            headers: { 'User-Agent': 'research-rabbit/0.1.0 (academic research tool)' },
+            signal: AbortSignal.timeout(15000),
+        });
+        const abstractXml = fetchResp.ok ? await fetchResp.text() : '';
+        // Parse abstracts from XML
+        const abstracts = {};
+        const articleMatches = [...abstractXml.matchAll(/<PubmedArticle>([\s\S]*?)<\/PubmedArticle>/g)];
+        for (const articleMatch of articleMatches) {
+            const articleXml = articleMatch[1];
+            const pmidMatch = articleXml.match(/<PMID[^>]*>(\d+)<\/PMID>/);
+            const abstractMatch = articleXml.match(/<AbstractText[^>]*>([\s\S]*?)<\/AbstractText>/);
+            if (pmidMatch && abstractMatch) {
+                abstracts[pmidMatch[1]] = abstractMatch[1].replace(/<[^>]+>/g, ' ').replace(/\s+/g, ' ').trim();
+            }
+        }
+        const papers = [];
+        for (const id of ids) {
+            const summary = summaryData.result?.[id];
+            if (!summary || id === 'uids')
+                continue;
+            const doi = summary.articleids?.find(a => a.idtype === 'doi')?.value;
+            const year = parseInt(summary.pubdate?.split(' ')[0] || '0') || 0;
+            papers.push({
+                id: `pubmed:${id}`,
+                source: 'pubmed',
+                title: summary.title || '',
+                authors: (summary.authors || []).map(a => a.name),
+                year,
+                abstract: abstracts[id] || '',
+                doi,
+                url: `https://pubmed.ncbi.nlm.nih.gov/${id}/`,
+            });
+        }
+        return papers;
+    }
+    catch (error) {
+        console.error('PubMed search failed:', error instanceof Error ? error.message : error);
+        return [];
+    }
+}
+//# sourceMappingURL=pubmed.js.map

package/dist/sources/pubmed.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"pubmed.js","sourceRoot":"","sources":["../../src/sources/pubmed.ts"],"names":[],"mappings":"AAEA,MAAM,CAAC,KAAK,UAAU,YAAY,CAAC,KAAa,EAAE,QAAgB,EAAE,EAAE,QAAiB;IACrF,MAAM,UAAU,GAAG,QAAQ,CAAC,CAAC,CAAC,GAAG,KAAK,QAAQ,QAAQ,aAAa,CAAC,CAAC,CAAC,KAAK,CAAC;IAE5E,yBAAyB;IACzB,MAAM,SAAS,GAAG,6EAA6E,kBAAkB,CAAC,UAAU,CAAC,WAAW,KAAK,eAAe,CAAC;IAE7J,IAAI,CAAC;QACH,MAAM,UAAU,GAAG,MAAM,KAAK,CAAC,SAAS,EAAE;YACxC,OAAO,EAAE,EAAE,YAAY,EAAE,gDAAgD,EAAE;YAC3E,MAAM,EAAE,WAAW,CAAC,OAAO,CAAC,KAAK,CAAC;SACnC,CAAC,CAAC;QACH,IAAI,CAAC,UAAU,CAAC,EAAE;YAAE,MAAM,IAAI,KAAK,CAAC,wBAAwB,UAAU,CAAC,MAAM,EAAE,CAAC,CAAC;QAEjF,MAAM,UAAU,GAAG,MAAM,UAAU,CAAC,IAAI,EAA6C,CAAC;QACtF,MAAM,GAAG,GAAG,UAAU,CAAC,aAAa,EAAE,MAAM,IAAI,EAAE,CAAC;QACnD,IAAI,GAAG,CAAC,MAAM,KAAK,CAAC;YAAE,OAAO,EAAE,CAAC;QAEhC,0BAA0B;QAC1B,MAAM,UAAU,GAAG,4EAA4E,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,eAAe,CAAC;QAC5H,MAAM,WAAW,GAAG,MAAM,KAAK,CAAC,UAAU,EAAE;YAC1C,OAAO,EAAE,EAAE,YAAY,EAAE,gDAAgD,EAAE;YAC3E,MAAM,EAAE,WAAW,CAAC,OAAO,CAAC,KAAK,CAAC;SACnC,CAAC,CAAC;QACH,IAAI,CAAC,WAAW,CAAC,EAAE;YAAE,MAAM,IAAI,KAAK,CAAC,yBAAyB,WAAW,CAAC,MAAM,EAAE,CAAC,CAAC;QAEpF,MAAM,WAAW,GAAG,MAAM,WAAW,CAAC,IAAI,EAQzC,CAAC;QAEF,mCAAmC;QACnC,MAAM,QAAQ,GAAG,0EAA0E,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,+BAA+B,CAAC;QACxI,MAAM,SAAS,GAAG,MAAM,KAAK,CAAC,QAAQ,EAAE;YACtC,OAAO,EAAE,EAAE,YAAY,EAAE,gDAAgD,EAAE;YAC3E,MAAM,EAAE,WAAW,CAAC,OAAO,CAAC,KAAK,CAAC;SACnC,CAAC,CAAC;QAEH,MAAM,WAAW,GAAG,SAAS,CAAC,EAAE,CAAC,CAAC,CAAC,MAAM,SAAS,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;QAE/D,2BAA2B;QAC3B,MAAM,SAAS,GAA2B,EAAE,CAAC;QAC7C,MAAM,cAAc,GAAG,CAAC,GAAG,WAAW,CAAC,QAAQ,CAAC,6CAA6C,CAAC,CAAC,CAAC;QAChG,KAAK,MAAM,YAAY,IAAI,cAAc,EAAE,CAAC;YAC1C,MAAM,UAAU,GAAG,YAAY,CAAC,CAAC,CAAC,CAAC;YACnC,MAAM,SAAS,GAAG,UAAU,CAAC,KAAK,CAAC,0BAA0B,CAAC,CAAC;YAC/D,MAAM,aAAa,GAAG,UAAU,CAAC,KAAK,CAAC,+CAA+C,CAAC,CAAC;YACxF,IAAI,SAAS,IAAI,aAAa,EAAE,CAAC;gBAC/B,SAAS,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,GAAG,aAAa,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,UAAU,EAAE,GAAG,CAAC,CAAC,OAAO,CAAC,MAAM,EAAE,GAAG,CAAC,CAAC,IAAI,EAAE,CAAC;YAClG,CAAC;QACH,CAAC;QAED,MAAM,MAAM,GAAY,EAAE,CAAC;QAC3B,KAAK,MAAM,EAAE,IAAI,GAAG,EAAE,CAAC;YACrB,MAAM,OAAO,GAAG,WAAW,CAAC,MAAM,EAAE,CAAC,EAAE,CAAC,CAAC;YACzC,IAAI,CAAC,OAAO,IAAI,EAAE,KAAK,MAAM;gBAAE,SAAS;YAExC,MAAM,GAAG,GAAG,OAAO,CAAC,UAAU,EAAE,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,MAAM,KAAK,KAAK,CAAC,EAAE,KAAK,CAAC;YACrE,MAAM,IAAI,GAAG,QAAQ,CAAC,OAAO,CAAC,OAAO,EAAE,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,IAAI,GAAG,CAAC,IAAI,CAAC,CAAC;YAElE,MAAM,CAAC,IAAI,CAAC;gBACV,EAAE,EAAE,UAAU,EAAE,EAAE;gBAClB,MAAM,EAAE,QAAQ;gBAChB,KAAK,EAAE,OAAO,CAAC,KAAK,IAAI,EAAE;gBAC1B,OAAO,EAAE,CAAC,OAAO,CAAC,OAAO,IAAI,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,CAAC;gBACjD,IAAI;gBACJ,QAAQ,EAAE,SAAS,CAAC,EAAE,CAAC,IAAI,EAAE;gBAC7B,GAAG;gBACH,GAAG,EAAE,mCAAmC,EAAE,GAAG;aAC9C,CAAC,CAAC;QACL,CAAC;QAED,OAAO,MAAM,CAAC;IAChB,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,OAAO,CAAC,KAAK,CAAC,uBAAuB,EAAE,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC;QACvF,OAAO,EAAE,CAAC;IACZ,CAAC;AACH,CAAC"}

package/dist/sources/semantic_scholar.d.ts

@@ -0,0 +1,3 @@
+import type { Paper } from '../types.js';
+export declare function searchSemanticScholar(query: string, limit?: number, yearFrom?: number): Promise<Paper[]>;
+//# sourceMappingURL=semantic_scholar.d.ts.map

package/dist/sources/semantic_scholar.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"semantic_scholar.d.ts","sourceRoot":"","sources":["../../src/sources/semantic_scholar.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,KAAK,EAAE,MAAM,aAAa,CAAC;AAazC,wBAAsB,qBAAqB,CAAC,KAAK,EAAE,MAAM,EAAE,KAAK,GAAE,MAAW,EAAE,QAAQ,CAAC,EAAE,MAAM,GAAG,OAAO,CAAC,KAAK,EAAE,CAAC,CAqClH"}