@gmod/tabix 3.4.2 → 3.5.0

package/esm/tabixIndexedFile.js

@@ -7,6 +7,7 @@ import TBI from "./tbi.js";
 import { optimizeChunks } from "./util.js";
 const TAB = 9;
 const NEWLINE = 10;
+const CARRIAGE_RETURN = 13;
 const SEMICOLON = 59;
 function resolveFilehandle(filehandle, path, url) {
     if (filehandle) {
@@ -20,6 +21,35 @@ function resolveFilehandle(filehandle, path, url) {
     }
     throw new TypeError('must provide either filehandle, path, or url');
 }
+// An explicitly supplied index always wins over the `<path>.tbi` /
+// `<url>.tbi` names derived from the data file, whichever kind it is.
+function resolveIndex({ tbiFilehandle, csiFilehandle, tbiPath, csiPath, tbiUrl, csiUrl, path, url, }) {
+    if (tbiFilehandle) {
+        return new TBI({ filehandle: tbiFilehandle });
+    }
+    if (csiFilehandle) {
+        return new CSI({ filehandle: csiFilehandle });
+    }
+    if (tbiPath) {
+        return new TBI({ filehandle: new LocalFile(tbiPath) });
+    }
+    if (csiPath) {
+        return new CSI({ filehandle: new LocalFile(csiPath) });
+    }
+    if (csiUrl) {
+        return new CSI({ filehandle: new RemoteFile(csiUrl) });
+    }
+    if (tbiUrl) {
+        return new TBI({ filehandle: new RemoteFile(tbiUrl) });
+    }
+    if (path) {
+        return new TBI({ filehandle: new LocalFile(`${path}.tbi`) });
+    }
+    if (url) {
+        return new TBI({ filehandle: new RemoteFile(`${url}.tbi`) });
+    }
+    throw new TypeError('must provide one of tbiFilehandle, tbiPath, csiFilehandle, csiPath, tbiUrl, csiUrl');
+}
 function calculateFileOffset(cpositions, dpositions, pos, blockStart, minvDataPosition) {
     return (cpositions[pos] * (1 << 8) +
         (blockStart - dpositions[pos]) +
@@ -89,33 +119,16 @@ export default class TabixIndexedFile {
     chunkCache;
     constructor({ path, filehandle, url, tbiPath, tbiUrl, tbiFilehandle, csiPath, csiUrl, csiFilehandle, chunkCacheSize = 5 * 2 ** 20, }) {
         this.filehandle = resolveFilehandle(filehandle, path, url);
-        if (tbiFilehandle) {
-            this.index = new TBI({ filehandle: tbiFilehandle });
-        }
-        else if (csiFilehandle) {
-            this.index = new CSI({ filehandle: csiFilehandle });
-        }
-        else if (tbiPath) {
-            this.index = new TBI({ filehandle: new LocalFile(tbiPath) });
-        }
-        else if (csiPath) {
-            this.index = new CSI({ filehandle: new LocalFile(csiPath) });
-        }
-        else if (path) {
-            this.index = new TBI({ filehandle: new LocalFile(`${path}.tbi`) });
-        }
-        else if (csiUrl) {
-            this.index = new CSI({ filehandle: new RemoteFile(csiUrl) });
-        }
-        else if (tbiUrl) {
-            this.index = new TBI({ filehandle: new RemoteFile(tbiUrl) });
-        }
-        else if (url) {
-            this.index = new TBI({ filehandle: new RemoteFile(`${url}.tbi`) });
-        }
-        else {
-            throw new TypeError('must provide one of tbiFilehandle, tbiPath, csiFilehandle, csiPath, tbiUrl, csiUrl');
-        }
+        this.index = resolveIndex({
+            tbiFilehandle,
+            csiFilehandle,
+            tbiPath,
+            csiPath,
+            tbiUrl,
+            csiUrl,
+            path,
+            url,
+        });
         this.chunkCache = new AbortablePromiseCache({
             cache: new LRU({ maxSize: Math.floor(chunkCacheSize / (1 << 16)) }),
             fill: (args, signal) => this.readChunk(args, { signal }),
@@ -210,15 +223,14 @@ export default class TabixIndexedFile {
                     blockStart = n + 1;
                     continue;
                 }
-                // find tab positions
+                // find tab positions. Columns past the end of the line all get `n`
+                // rather than breaking out, which would leave stale offsets from the
+                // previous line in the tail of the array.
                 tabs[0] = blockStart - 1;
                 for (let i = 0; i < maxColumn; i++) {
-                    const tabPos = buffer.indexOf(TAB, tabs[i] + 1);
-                    if (tabPos === -1 || tabPos >= n) {
-                        tabs[i + 1] = n;
-                        break;
-                    }
-                    tabs[i + 1] = tabPos;
+                    const prev = tabs[i];
+                    const tabPos = prev < n ? buffer.indexOf(TAB, prev + 1) : -1;
+                    tabs[i + 1] = tabPos === -1 || tabPos >= n ? n : tabPos;
                 }
                 // compare ref name bytes directly
                 const refStart = tabs[refCol - 1] + 1;
@@ -257,7 +269,9 @@ export default class TabixIndexedFile {
                     endCoordinate = parseIntFromBytes(buffer, tabs[endCol - 1] + 1, tabs[endCol]);
                 }
                 if (endCoordinate > start) {
-                    const line = decoder.decode(buffer.subarray(blockStart, n));
+                    // trim a CRLF terminator, matching htslib's line reader
+                    const lineEnd = buffer[n - 1] === CARRIAGE_RETURN ? n - 1 : n;
+                    const line = decoder.decode(buffer.subarray(blockStart, lineEnd));
                     callback(line, calculateFileOffset(cpositions, dpositions, pos, blockStart, minvDataPosition), startCoordinate, endCoordinate);
                 }
                 blockStart = n + 1;

package/esm/tabixIndexedFile.js.map

@@ -1 +1 @@
-{"version":3,"file":"tabixIndexedFile.js","sourceRoot":"","sources":["../src/tabixIndexedFile.ts"],"names":[],"mappings":"AAAA,OAAO,qBAAqB,MAAM,+BAA+B,CAAA;AACjE,OAAO,EAAE,KAAK,EAAE,eAAe,EAAE,MAAM,uBAAuB,CAAA;AAC9D,OAAO,GAAG,MAAM,oBAAoB,CAAA;AACpC,OAAO,EAAE,SAAS,EAAE,UAAU,EAAE,MAAM,qBAAqB,CAAA;AAE3D,OAAO,GAAG,MAAM,UAAU,CAAA;AAC1B,OAAO,GAAG,MAAM,UAAU,CAAA;AAC1B,OAAO,EAAE,cAAc,EAAE,MAAM,WAAW,CAAA;AAO1C,MAAM,GAAG,GAAG,CAAC,CAAA;AACb,MAAM,OAAO,GAAG,EAAE,CAAA;AAClB,MAAM,SAAS,GAAG,EAAE,CAAA;AA4BpB,SAAS,iBAAiB,CACxB,UAA8B,EAC9B,IAAa,EACb,GAAY;IAEZ,IAAI,UAAU,EAAE,CAAC;QACf,OAAO,UAAU,CAAA;IACnB,CAAC;IACD,IAAI,IAAI,EAAE,CAAC;QACT,OAAO,IAAI,SAAS,CAAC,IAAI,CAAC,CAAA;IAC5B,CAAC;IACD,IAAI,GAAG,EAAE,CAAC;QACR,OAAO,IAAI,UAAU,CAAC,GAAG,CAAC,CAAA;IAC5B,CAAC;IACD,MAAM,IAAI,SAAS,CAAC,8CAA8C,CAAC,CAAA;AACrE,CAAC;AAED,SAAS,mBAAmB,CAC1B,UAAoB,EACpB,UAAoB,EACpB,GAAW,EACX,UAAkB,EAClB,gBAAwB;IAExB,OAAO,CACL,UAAU,CAAC,GAAG,CAAE,GAAG,CAAC,CAAC,IAAI,CAAC,CAAC;QAC3B,CAAC,UAAU,GAAG,UAAU,CAAC,GAAG,CAAE,CAAC;QAC/B,gBAAgB;QAChB,CAAC,CACF,CAAA;AACH,CAAC;AAED,SAAS,SAAS,CAChB,MAAkB,EAClB,eAAuB,EACvB,QAAgB,EAChB,MAAc,EACd,SAAiB,EACjB,OAAe;IAEf,MAAM,MAAM,GAAG,MAAM,GAAG,QAAQ,CAAA;IAChC,IAAI,aAAa,GAAG,eAAe,GAAG,MAAM,CAAA;IAE5C,kCAAkC;IAClC,IAAI,MAAM,CAAC,SAAS,CAAC,KAAK,EAAE,EAAE,CAAC;QAC7B,OAAO,aAAa,CAAA;IACtB,CAAC;IAED,iEAAiE;IACjE,kEAAkE;IAClE,4DAA4D;IAC5D,IAAI,UAAU,GAAG,SAAS,CAAA;IAC1B,KAAK,IAAI,CAAC,GAAG,SAAS,EAAE,CAAC,IAAI,OAAO,EAAE,CAAC,EAAE,EAAE,CAAC;QAC1C,IAAI,CAAC,KAAK,OAAO,IAAI,MAAM,CAAC,CAAC,CAAC,KAAK,SAAS,EAAE,CAAC;YAC7C,MAAM,QAAQ,GAAG,CAAC,GAAG,UAAU,CAAA;YAC/B,IACE,QAAQ,IAAI,EAAE;gBACd,MAAM,CAAC,UAAU,CAAC,KAAK,EAAE,IAAI,IAAI;gBACjC,MAAM,CAAC,UAAU,GAAG,CAAC,CAAC,KAAK,EAAE,IAAI,IAAI;gBACrC,MAAM,CAAC,UAAU,GAAG,CAAC,CAAC,KAAK,EAAE,IAAI,IAAI;gBACrC,MAAM,CAAC,UAAU,GAAG,CAAC,CAAC,KAAK,EAAE,IAAI,IAAI;gBACrC,MAAM,CAAC,UAAU,GAAG,CAAC,CAAC,KAAK,EAAE,IAAI,IAAI;gBACrC,MAAM,CAAC,UAAU,GAAG,CAAC,CAAC,KAAK,EAAE,IAAI,IAAI;gBACrC,MAAM,CAAC,UAAU,GAAG,CAAC,CAAC,KAAK,EAAE,IAAI,IAAI;gBACrC,MAAM,CAAC,UAAU,GAAG,CAAC,CAAC,KAAK,EAAE,IAAI,IAAI;gBACrC,MAAM,CAAC,UAAU,GAAG,CAAC,CAAC,KAAK,EAAE,IAAI,IAAI;gBACrC,MAAM,CAAC,UAAU,GAAG,CAAC,CAAC,KAAK,EAAE,CAAC,IAAI;cAClC,CAAC;gBACD,OAAO,eAAe,GAAG,CAAC,CAAA;YAC5B,CAAC;YACD,IACE,QAAQ,IAAI,CAAC;gBACb,MAAM,CAAC,UAAU,CAAC,KAAK,EAAE,IAAI,IAAI;gBACjC,MAAM,CAAC,UAAU,GAAG,CAAC,CAAC,KAAK,EAAE,IAAI,IAAI;gBACrC,MAAM,CAAC,UAAU,GAAG,CAAC,CAAC,KAAK,EAAE,IAAI,IAAI;gBACrC,MAAM,CAAC,UAAU,GAAG,CAAC,CAAC,KAAK,EAAE,CAAC,IAAI;cAClC,CAAC;gBACD,aAAa,GAAG,iBAAiB,CAAC,MAAM,EAAE,UAAU,GAAG,CAAC,EAAE,CAAC,CAAC,CAAA;YAC9D,CAAC;YACD,UAAU,GAAG,CAAC,GAAG,CAAC,CAAA;QACpB,CAAC;IACH,CAAC;IACD,OAAO,aAAa,CAAA;AACtB,CAAC;AAED,SAAS,iBAAiB,CAAC,MAAkB,EAAE,KAAa,EAAE,GAAW;IACvE,IAAI,GAAG,GAAG,CAAC,CAAA;IACX,KAAK,IAAI,CAAC,GAAG,KAAK,EAAE,CAAC,GAAG,GAAG,EAAE,CAAC,EAAE,EAAE,CAAC;QACjC,MAAM,CAAC,GAAG,MAAM,CAAC,CAAC,CAAE,CAAA;QACpB,IAAI,CAAC,IAAI,EAAE,IAAI,CAAC,IAAI,EAAE,EAAE,CAAC;YACvB,GAAG,GAAG,GAAG,GAAG,EAAE,GAAG,CAAC,CAAC,GAAG,EAAE,CAAC,CAAA;QAC3B,CAAC;aAAM,CAAC;YACN,MAAK;QACP,CAAC;IACH,CAAC;IACD,OAAO,GAAG,CAAA;AACZ,CAAC;AAED;;GAEG;AACH,MAAM,CAAC,OAAO,OAAO,gBAAgB;IAC3B,UAAU,CAAmB;IAC7B,KAAK,CAAW;IAChB,UAAU,CAAyC;IAE3D,YAAY,EACV,IAAI,EACJ,UAAU,EACV,GAAG,EACH,OAAO,EACP,MAAM,EACN,aAAa,EACb,OAAO,EACP,MAAM,EACN,aAAa,EACb,cAAc,GAAG,CAAC,GAAG,CAAC,IAAI,EAAE,GAY7B;QACC,IAAI,CAAC,UAAU,GAAG,iBAAiB,CAAC,UAAU,EAAE,IAAI,EAAE,GAAG,CAAC,CAAA;QAE1D,IAAI,aAAa,EAAE,CAAC;YAClB,IAAI,CAAC,KAAK,GAAG,IAAI,GAAG,CAAC,EAAE,UAAU,EAAE,aAAa,EAAE,CAAC,CAAA;QACrD,CAAC;aAAM,IAAI,aAAa,EAAE,CAAC;YACzB,IAAI,CAAC,KAAK,GAAG,IAAI,GAAG,CAAC,EAAE,UAAU,EAAE,aAAa,EAAE,CAAC,CAAA;QACrD,CAAC;aAAM,IAAI,OAAO,EAAE,CAAC;YACnB,IAAI,CAAC,KAAK,GAAG,IAAI,GAAG,CAAC,EAAE,UAAU,EAAE,IAAI,SAAS,CAAC,OAAO,CAAC,EAAE,CAAC,CAAA;QAC9D,CAAC;aAAM,IAAI,OAAO,EAAE,CAAC;YACnB,IAAI,CAAC,KAAK,GAAG,IAAI,GAAG,CAAC,EAAE,UAAU,EAAE,IAAI,SAAS,CAAC,OAAO,CAAC,EAAE,CAAC,CAAA;QAC9D,CAAC;aAAM,IAAI,IAAI,EAAE,CAAC;YAChB,IAAI,CAAC,KAAK,GAAG,IAAI,GAAG,CAAC,EAAE,UAAU,EAAE,IAAI,SAAS,CAAC,GAAG,IAAI,MAAM,CAAC,EAAE,CAAC,CAAA;QACpE,CAAC;aAAM,IAAI,MAAM,EAAE,CAAC;YAClB,IAAI,CAAC,KAAK,GAAG,IAAI,GAAG,CAAC,EAAE,UAAU,EAAE,IAAI,UAAU,CAAC,MAAM,CAAC,EAAE,CAAC,CAAA;QAC9D,CAAC;aAAM,IAAI,MAAM,EAAE,CAAC;YAClB,IAAI,CAAC,KAAK,GAAG,IAAI,GAAG,CAAC,EAAE,UAAU,EAAE,IAAI,UAAU,CAAC,MAAM,CAAC,EAAE,CAAC,CAAA;QAC9D,CAAC;aAAM,IAAI,GAAG,EAAE,CAAC;YACf,IAAI,CAAC,KAAK,GAAG,IAAI,GAAG,CAAC,EAAE,UAAU,EAAE,IAAI,UAAU,CAAC,GAAG,GAAG,MAAM,CAAC,EAAE,CAAC,CAAA;QACpE,CAAC;aAAM,CAAC;YACN,MAAM,IAAI,SAAS,CACjB,oFAAoF,CACrF,CAAA;QACH,CAAC;QAED,IAAI,CAAC,UAAU,GAAG,IAAI,qBAAqB,CAAmB;YAC5D,KAAK,EAAE,IAAI,GAAG,CAAC,EAAE,OAAO,EAAE,IAAI,CAAC,KAAK,CAAC,cAAc,GAAG,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,EAAE,CAAC;YACnE,IAAI,EAAE,CAAC,IAAW,EAAE,MAAoB,EAAE,EAAE,CAC1C,IAAI,CAAC,SAAS,CAAC,IAAI,EAAE,EAAE,MAAM,EAAE,CAAC;SACnC,CAAC,CAAA;IACJ,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,eAAe,CACnB,OAA0D,EAC1D,OAAgB,EAAE;QAElB,MAAM,GAAG,GAAY,EAAE,CAAA;QACvB,KAAK,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,IAAI,OAAO,EAAE,CAAC;YAC9C,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,cAAc,CAAC,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,IAAI,CAAC,CAAA;YACzE,KAAK,MAAM,KAAK,IAAI,MAAM,EAAE,CAAC;gBAC3B,GAAG,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;YACjB,CAAC;QACH,CAAC;QACD,IAAI,KAAK,GAAG,CAAC,CAAA;QACb,KAAK,MAAM,KAAK,IAAI,cAAc,CAAC,GAAG,CAAC,EAAE,CAAC;YACxC,KAAK,IAAI,KAAK,CAAC,WAAW,EAAE,CAAA;QAC9B,CAAC;QACD,OAAO,KAAK,CAAA;IACd,CAAC;IAED;;;;;OAKG;IACH,KAAK,CAAC,QAAQ,CACZ,OAAe,EACf,CAAqB,EACrB,CAAqB,EACrB,IAAqC;QAErC,IAAI,MAA+B,CAAA;QACnC,IAAI,OAAO,GAAY,EAAE,CAAA;QACzB,IAAI,QAA0B,CAAA;QAC9B,IAAI,UAAsC,CAAA;QAE1C,IAAI,OAAO,IAAI,KAAK,UAAU,EAAE,CAAC;YAC/B,QAAQ,GAAG,IAAI,CAAA;QACjB,CAAC;aAAM,CAAC;YACN,OAAO,GAAG,IAAI,CAAA;YACd,QAAQ,GAAG,IAAI,CAAC,YAAY,CAAA;YAC5B,MAAM,GAAG,IAAI,CAAC,MAAM,CAAA;YACpB,UAAU,GAAG,IAAI,CAAC,UAAU,CAAA;QAC9B,CAAC;QAED,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,CAAA;QACtD,MAAM,KAAK,GAAG,CAAC,IAAI,CAAC,CAAA;QACpB,MAAM,GAAG,GAAG,CAAC,IAAI,QAAQ,CAAC,YAAY,CAAA;QACtC,IAAI,KAAK,GAAG,GAAG,EAAE,CAAC;YAChB,MAAM,IAAI,SAAS,CACjB,4EAA4E,CAC7E,CAAA;QACH,CAAC;QACD,IAAI,KAAK,KAAK,GAAG,EAAE,CAAC;YAClB,OAAM;QACR,CAAC;QAED,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,cAAc,CAAC,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,OAAO,CAAC,CAAA;QAE5E,MAAM,KAAK,GAAG,QAAQ,CAAC,MAAM,KAAK,KAAK,CAAA;QACvC,MAAM,MAAM,GAAG,QAAQ,CAAC,aAAa,CAAC,GAAG,IAAI,CAAC,CAAA;QAC9C,MAAM,QAAQ,GAAG,QAAQ,CAAC,aAAa,CAAC,KAAK,IAAI,CAAC,CAAA;QAClD,MAAM,MAAM,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,aAAa,CAAC,GAAG,IAAI,CAAC,CAAA;QAC1D,MAAM,SAAS,GAAG,IAAI,CAAC,GAAG,CAAC,MAAM,EAAE,QAAQ,EAAE,MAAM,CAAC,CAAA;QACpD,MAAM,YAAY,GAAG,QAAQ,CAAC,QAAQ,EAAE,UAAU,CAAC,CAAC,CAAC,CAAA;QACrD,MAAM,gBAAgB,GACpB,QAAQ,CAAC,cAAc,KAAK,gBAAgB,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;QAEvD,MAAM,OAAO,GAAG,IAAI,WAAW,EAAE,CAAA;QACjC,MAAM,OAAO,GAAG,IAAI,WAAW,EAAE,CAAA;QACjC,MAAM,kBAAkB,GAAG,OAAO,CAAC,MAAM,CAAC,OAAO,CAAC,CAAA;QAClD,0EAA0E;QAC1E,6EAA6E;QAC7E,MAAM,IAAI,GAAG,IAAI,UAAU,CAAC,SAAS,GAAG,CAAC,CAAC,CAAA;QAE1C,IAAI,UAAU,GAAG,CAAC,CAAA;QAClB,KAAK,MAAM,CAAC,IAAI,MAAM,EAAE,CAAC;YACvB,UAAU,IAAI,CAAC,CAAC,WAAW,EAAE,CAAA;QAC/B,CAAC;QACD,IAAI,eAAe,GAAG,CAAC,CAAA;QACvB,UAAU,EAAE,CAAC,CAAC,EAAE,UAAU,CAAC,CAAA;QAE3B,KAAK,MAAM,CAAC,IAAI,MAAM,EAAE,CAAC;YACvB,MAAM,EAAE,MAAM,EAAE,UAAU,EAAE,UAAU,EAAE,GAAG,MAAM,IAAI,CAAC,UAAU,CAAC,GAAG,CAClE,CAAC,CAAC,QAAQ,EAAE,EACZ,CAAC,EACD,MAAM,CACP,CAAA;YACD,eAAe,IAAI,CAAC,CAAC,WAAW,EAAE,CAAA;YAClC,UAAU,EAAE,CAAC,eAAe,EAAE,UAAU,CAAC,CAAA;YACzC,MAAM,gBAAgB,GAAG,CAAC,CAAC,IAAI,CAAC,YAAY,CAAA;YAE5C,IAAI,UAAU,GAAG,CAAC,CAAA;YAClB,IAAI,GAAG,GAAG,CAAC,CAAA;YAEX,OAAO,UAAU,GAAG,MAAM,CAAC,MAAM,EAAE,CAAC;gBAClC,MAAM,CAAC,GAAG,MAAM,CAAC,OAAO,CAAC,OAAO,EAAE,UAAU,CAAC,CAAA;gBAC7C,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC;oBACb,MAAK;gBACP,CAAC;gBAED,MAAM,MAAM,GAAG,UAAU,GAAG,gBAAgB,CAAA;gBAC5C,OAAO,GAAG,GAAG,UAAU,CAAC,MAAM,IAAI,MAAM,IAAI,UAAU,CAAC,GAAG,CAAE,EAAE,CAAC;oBAC7D,GAAG,EAAE,CAAA;gBACP,CAAC;gBAED,kBAAkB;gBAClB,IAAI,YAAY,KAAK,SAAS,IAAI,MAAM,CAAC,UAAU,CAAC,KAAK,YAAY,EAAE,CAAC;oBACtE,UAAU,GAAG,CAAC,GAAG,CAAC,CAAA;oBAClB,SAAQ;gBACV,CAAC;gBAED,qBAAqB;gBACrB,IAAI,CAAC,CAAC,CAAC,GAAG,UAAU,GAAG,CAAC,CAAA;gBACxB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,SAAS,EAAE,CAAC,EAAE,EAAE,CAAC;oBACnC,MAAM,MAAM,GAAG,MAAM,CAAC,OAAO,CAAC,GAAG,EAAE,IAAI,CAAC,CAAC,CAAE,GAAG,CAAC,CAAC,CAAA;oBAChD,IAAI,MAAM,KAAK,CAAC,CAAC,IAAI,MAAM,IAAI,CAAC,EAAE,CAAC;wBACjC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAA;wBACf,MAAK;oBACP,CAAC;oBACD,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,MAAM,CAAA;gBACtB,CAAC;gBAED,kCAAkC;gBAClC,MAAM,QAAQ,GAAG,IAAI,CAAC,MAAM,GAAG,CAAC,CAAE,GAAG,CAAC,CAAA;gBACtC,MAAM,MAAM,GAAG,IAAI,CAAC,MAAM,CAAE,CAAA;gBAC5B,MAAM,MAAM,GAAG,MAAM,GAAG,QAAQ,CAAA;gBAChC,IAAI,MAAM,KAAK,kBAAkB,CAAC,MAAM,EAAE,CAAC;oBACzC,UAAU,GAAG,CAAC,GAAG,CAAC,CAAA;oBAClB,SAAQ;gBACV,CAAC;gBACD,IAAI,QAAQ,GAAG,IAAI,CAAA;gBACnB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;oBAChC,IAAI,MAAM,CAAC,QAAQ,GAAG,CAAC,CAAC,KAAK,kBAAkB,CAAC,CAAC,CAAC,EAAE,CAAC;wBACnD,QAAQ,GAAG,KAAK,CAAA;wBAChB,MAAK;oBACP,CAAC;gBACH,CAAC;gBACD,IAAI,CAAC,QAAQ,EAAE,CAAC;oBACd,UAAU,GAAG,CAAC,GAAG,CAAC,CAAA;oBAClB,SAAQ;gBACV,CAAC;gBAED,yBAAyB;gBACzB,MAAM,eAAe,GACnB,iBAAiB,CAAC,MAAM,EAAE,IAAI,CAAC,QAAQ,GAAG,CAAC,CAAE,GAAG,CAAC,EAAE,IAAI,CAAC,QAAQ,CAAE,CAAC;oBACnE,gBAAgB,CAAA;gBAElB,IAAI,eAAe,IAAI,GAAG,EAAE,CAAC;oBAC3B,OAAM;gBACR,CAAC;gBAED,uBAAuB;gBACvB,IAAI,aAAqB,CAAA;gBACzB,IAAI,MAAM,KAAK,CAAC,IAAI,MAAM,KAAK,QAAQ,EAAE,CAAC;oBACxC,aAAa,GAAG,eAAe,GAAG,CAAC,CAAA;gBACrC,CAAC;qBAAM,IAAI,KAAK,EAAE,CAAC;oBACjB,aAAa,GAAG,SAAS,CACvB,MAAM,EACN,eAAe,EACf,IAAI,CAAC,CAAC,CAAE,GAAG,CAAC,EACZ,IAAI,CAAC,CAAC,CAAE,EACR,IAAI,CAAC,MAAM,GAAG,CAAC,CAAE,GAAG,CAAC,EACrB,IAAI,CAAC,MAAM,CAAE,CACd,CAAA;gBACH,CAAC;qBAAM,CAAC;oBACN,aAAa,GAAG,iBAAiB,CAC/B,MAAM,EACN,IAAI,CAAC,MAAM,GAAG,CAAC,CAAE,GAAG,CAAC,EACrB,IAAI,CAAC,MAAM,CAAE,CACd,CAAA;gBACH,CAAC;gBAED,IAAI,aAAa,GAAG,KAAK,EAAE,CAAC;oBAC1B,MAAM,IAAI,GAAG,OAAO,CAAC,MAAM,CAAC,MAAM,CAAC,QAAQ,CAAC,UAAU,EAAE,CAAC,CAAC,CAAC,CAAA;oBAC3D,QAAQ,CACN,IAAI,EACJ,mBAAmB,CACjB,UAAU,EACV,UAAU,EACV,GAAG,EACH,UAAU,EACV,gBAAgB,CACjB,EACD,eAAe,EACf,aAAa,CACd,CAAA;gBACH,CAAC;gBACD,UAAU,GAAG,CAAC,GAAG,CAAC,CAAA;YACpB,CAAC;QACH,CAAC;IACH,CAAC;IAED,gBAAgB;IAChB,KAAK,CAAC,WAAW,CAAC,OAAgB,EAAE;QAClC,OAAO,IAAI,CAAC,KAAK,CAAC,WAAW,CAAC,IAAI,CAAC,CAAA;IACrC,CAAC;IAED,KAAK,CAAC,eAAe,CAAC,OAAgB,EAAE;QACtC,MAAM,EAAE,aAAa,EAAE,QAAQ,EAAE,YAAY,EAAE,GAC7C,MAAM,IAAI,CAAC,WAAW,CAAC,IAAI,CAAC,CAAA;QAE9B,MAAM,QAAQ,GAAG,CAAC,aAAa,EAAE,aAAa,IAAI,CAAC,CAAC,GAAG,YAAY,CAAA;QACnE,uEAAuE;QACvE,8DAA8D;QAE9D,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,QAAQ,EAAE,CAAC,EAAE,IAAI,CAAC,CAAA;QACzD,MAAM,KAAK,GAAG,CAAC,MAAM,KAAK,CAAC,GAAG,CAAC,CAAe,CAAA;QAE9C,0CAA0C;QAC1C,IAAI,QAAQ,EAAE,CAAC;YACb,IAAI,WAAW,GAAG,CAAC,CAAC,CAAA;YACpB,MAAM,QAAQ,GAAG,QAAQ,CAAC,UAAU,CAAC,CAAC,CAAC,CAAA;YAEvC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC;gBAC7C,MAAM,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,CAAA;gBACrB,IAAI,CAAC,KAAK,WAAW,GAAG,CAAC,IAAI,IAAI,KAAK,QAAQ,EAAE,CAAC;oBAC/C,MAAK;gBACP,CAAC;gBACD,IAAI,IAAI,KAAK,OAAO,EAAE,CAAC;oBACrB,WAAW,GAAG,CAAC,CAAA;gBACjB,CAAC;YACH,CAAC;YACD,OAAO,KAAK,CAAC,QAAQ,CAAC,CAAC,EAAE,WAAW,GAAG,CAAC,CAAC,CAAA;QAC3C,CAAC;QACD,OAAO,KAAK,CAAA;IACd,CAAC;IAED,KAAK,CAAC,SAAS,CAAC,OAAgB,EAAE;QAChC,MAAM,KAAK,GAAG,MAAM,IAAI,CAAC,eAAe,CAAC,IAAI,CAAC,CAAA;QAC9C,OAAO,IAAI,WAAW,EAAE,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;IACxC,CAAC;IAED,KAAK,CAAC,yBAAyB,CAAC,OAAgB,EAAE;QAChD,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,CAAC,IAAI,CAAC,CAAA;QAC7C,OAAO,QAAQ,CAAC,WAAW,CAAA;IAC7B,CAAC;IAED,6CAA6C;IAC7C,KAAK,CAAC,SAAS,CAAC,OAAe,EAAE,OAAgB,EAAE;QACjD,OAAO,IAAI,CAAC,KAAK,CAAC,SAAS,CAAC,OAAO,EAAE,IAAI,CAAC,CAAA;IAC5C,CAAC;IAED,gBAAgB;IAChB,KAAK,CAAC,SAAS,CAAC,CAAQ,EAAE,OAAgB,EAAE;QAC1C,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,UAAU,CAAC,IAAI,CACpC,CAAC,CAAC,WAAW,EAAE,EACf,CAAC,CAAC,IAAI,CAAC,aAAa,EACpB,IAAI,CACL,CAAA;QACD,OAAO,eAAe,CAAC,GAAG,EAAE,CAAC,CAAC,CAAA;IAChC,CAAC;CACF"}
+{"version":3,"file":"tabixIndexedFile.js","sourceRoot":"","sources":["../src/tabixIndexedFile.ts"],"names":[],"mappings":"AAAA,OAAO,qBAAqB,MAAM,+BAA+B,CAAA;AACjE,OAAO,EAAE,KAAK,EAAE,eAAe,EAAE,MAAM,uBAAuB,CAAA;AAC9D,OAAO,GAAG,MAAM,oBAAoB,CAAA;AACpC,OAAO,EAAE,SAAS,EAAE,UAAU,EAAE,MAAM,qBAAqB,CAAA;AAE3D,OAAO,GAAG,MAAM,UAAU,CAAA;AAC1B,OAAO,GAAG,MAAM,UAAU,CAAA;AAC1B,OAAO,EAAE,cAAc,EAAE,MAAM,WAAW,CAAA;AAO1C,MAAM,GAAG,GAAG,CAAC,CAAA;AACb,MAAM,OAAO,GAAG,EAAE,CAAA;AAClB,MAAM,eAAe,GAAG,EAAE,CAAA;AAC1B,MAAM,SAAS,GAAG,EAAE,CAAA;AA4BpB,SAAS,iBAAiB,CACxB,UAA8B,EAC9B,IAAa,EACb,GAAY;IAEZ,IAAI,UAAU,EAAE,CAAC;QACf,OAAO,UAAU,CAAA;IACnB,CAAC;IACD,IAAI,IAAI,EAAE,CAAC;QACT,OAAO,IAAI,SAAS,CAAC,IAAI,CAAC,CAAA;IAC5B,CAAC;IACD,IAAI,GAAG,EAAE,CAAC;QACR,OAAO,IAAI,UAAU,CAAC,GAAG,CAAC,CAAA;IAC5B,CAAC;IACD,MAAM,IAAI,SAAS,CAAC,8CAA8C,CAAC,CAAA;AACrE,CAAC;AAED,mEAAmE;AACnE,sEAAsE;AACtE,SAAS,YAAY,CAAC,EACpB,aAAa,EACb,aAAa,EACb,OAAO,EACP,OAAO,EACP,MAAM,EACN,MAAM,EACN,IAAI,EACJ,GAAG,GAUJ;IACC,IAAI,aAAa,EAAE,CAAC;QAClB,OAAO,IAAI,GAAG,CAAC,EAAE,UAAU,EAAE,aAAa,EAAE,CAAC,CAAA;IAC/C,CAAC;IACD,IAAI,aAAa,EAAE,CAAC;QAClB,OAAO,IAAI,GAAG,CAAC,EAAE,UAAU,EAAE,aAAa,EAAE,CAAC,CAAA;IAC/C,CAAC;IACD,IAAI,OAAO,EAAE,CAAC;QACZ,OAAO,IAAI,GAAG,CAAC,EAAE,UAAU,EAAE,IAAI,SAAS,CAAC,OAAO,CAAC,EAAE,CAAC,CAAA;IACxD,CAAC;IACD,IAAI,OAAO,EAAE,CAAC;QACZ,OAAO,IAAI,GAAG,CAAC,EAAE,UAAU,EAAE,IAAI,SAAS,CAAC,OAAO,CAAC,EAAE,CAAC,CAAA;IACxD,CAAC;IACD,IAAI,MAAM,EAAE,CAAC;QACX,OAAO,IAAI,GAAG,CAAC,EAAE,UAAU,EAAE,IAAI,UAAU,CAAC,MAAM,CAAC,EAAE,CAAC,CAAA;IACxD,CAAC;IACD,IAAI,MAAM,EAAE,CAAC;QACX,OAAO,IAAI,GAAG,CAAC,EAAE,UAAU,EAAE,IAAI,UAAU,CAAC,MAAM,CAAC,EAAE,CAAC,CAAA;IACxD,CAAC;IACD,IAAI,IAAI,EAAE,CAAC;QACT,OAAO,IAAI,GAAG,CAAC,EAAE,UAAU,EAAE,IAAI,SAAS,CAAC,GAAG,IAAI,MAAM,CAAC,EAAE,CAAC,CAAA;IAC9D,CAAC;IACD,IAAI,GAAG,EAAE,CAAC;QACR,OAAO,IAAI,GAAG,CAAC,EAAE,UAAU,EAAE,IAAI,UAAU,CAAC,GAAG,GAAG,MAAM,CAAC,EAAE,CAAC,CAAA;IAC9D,CAAC;IACD,MAAM,IAAI,SAAS,CACjB,oFAAoF,CACrF,CAAA;AACH,CAAC;AAED,SAAS,mBAAmB,CAC1B,UAAoB,EACpB,UAAoB,EACpB,GAAW,EACX,UAAkB,EAClB,gBAAwB;IAExB,OAAO,CACL,UAAU,CAAC,GAAG,CAAE,GAAG,CAAC,CAAC,IAAI,CAAC,CAAC;QAC3B,CAAC,UAAU,GAAG,UAAU,CAAC,GAAG,CAAE,CAAC;QAC/B,gBAAgB;QAChB,CAAC,CACF,CAAA;AACH,CAAC;AAED,SAAS,SAAS,CAChB,MAAkB,EAClB,eAAuB,EACvB,QAAgB,EAChB,MAAc,EACd,SAAiB,EACjB,OAAe;IAEf,MAAM,MAAM,GAAG,MAAM,GAAG,QAAQ,CAAA;IAChC,IAAI,aAAa,GAAG,eAAe,GAAG,MAAM,CAAA;IAE5C,kCAAkC;IAClC,IAAI,MAAM,CAAC,SAAS,CAAC,KAAK,EAAE,EAAE,CAAC;QAC7B,OAAO,aAAa,CAAA;IACtB,CAAC;IAED,iEAAiE;IACjE,kEAAkE;IAClE,4DAA4D;IAC5D,IAAI,UAAU,GAAG,SAAS,CAAA;IAC1B,KAAK,IAAI,CAAC,GAAG,SAAS,EAAE,CAAC,IAAI,OAAO,EAAE,CAAC,EAAE,EAAE,CAAC;QAC1C,IAAI,CAAC,KAAK,OAAO,IAAI,MAAM,CAAC,CAAC,CAAC,KAAK,SAAS,EAAE,CAAC;YAC7C,MAAM,QAAQ,GAAG,CAAC,GAAG,UAAU,CAAA;YAC/B,IACE,QAAQ,IAAI,EAAE;gBACd,MAAM,CAAC,UAAU,CAAC,KAAK,EAAE,IAAI,IAAI;gBACjC,MAAM,CAAC,UAAU,GAAG,CAAC,CAAC,KAAK,EAAE,IAAI,IAAI;gBACrC,MAAM,CAAC,UAAU,GAAG,CAAC,CAAC,KAAK,EAAE,IAAI,IAAI;gBACrC,MAAM,CAAC,UAAU,GAAG,CAAC,CAAC,KAAK,EAAE,IAAI,IAAI;gBACrC,MAAM,CAAC,UAAU,GAAG,CAAC,CAAC,KAAK,EAAE,IAAI,IAAI;gBACrC,MAAM,CAAC,UAAU,GAAG,CAAC,CAAC,KAAK,EAAE,IAAI,IAAI;gBACrC,MAAM,CAAC,UAAU,GAAG,CAAC,CAAC,KAAK,EAAE,IAAI,IAAI;gBACrC,MAAM,CAAC,UAAU,GAAG,CAAC,CAAC,KAAK,EAAE,IAAI,IAAI;gBACrC,MAAM,CAAC,UAAU,GAAG,CAAC,CAAC,KAAK,EAAE,IAAI,IAAI;gBACrC,MAAM,CAAC,UAAU,GAAG,CAAC,CAAC,KAAK,EAAE,CAAC,IAAI;cAClC,CAAC;gBACD,OAAO,eAAe,GAAG,CAAC,CAAA;YAC5B,CAAC;YACD,IACE,QAAQ,IAAI,CAAC;gBACb,MAAM,CAAC,UAAU,CAAC,KAAK,EAAE,IAAI,IAAI;gBACjC,MAAM,CAAC,UAAU,GAAG,CAAC,CAAC,KAAK,EAAE,IAAI,IAAI;gBACrC,MAAM,CAAC,UAAU,GAAG,CAAC,CAAC,KAAK,EAAE,IAAI,IAAI;gBACrC,MAAM,CAAC,UAAU,GAAG,CAAC,CAAC,KAAK,EAAE,CAAC,IAAI;cAClC,CAAC;gBACD,aAAa,GAAG,iBAAiB,CAAC,MAAM,EAAE,UAAU,GAAG,CAAC,EAAE,CAAC,CAAC,CAAA;YAC9D,CAAC;YACD,UAAU,GAAG,CAAC,GAAG,CAAC,CAAA;QACpB,CAAC;IACH,CAAC;IACD,OAAO,aAAa,CAAA;AACtB,CAAC;AAED,SAAS,iBAAiB,CAAC,MAAkB,EAAE,KAAa,EAAE,GAAW;IACvE,IAAI,GAAG,GAAG,CAAC,CAAA;IACX,KAAK,IAAI,CAAC,GAAG,KAAK,EAAE,CAAC,GAAG,GAAG,EAAE,CAAC,EAAE,EAAE,CAAC;QACjC,MAAM,CAAC,GAAG,MAAM,CAAC,CAAC,CAAE,CAAA;QACpB,IAAI,CAAC,IAAI,EAAE,IAAI,CAAC,IAAI,EAAE,EAAE,CAAC;YACvB,GAAG,GAAG,GAAG,GAAG,EAAE,GAAG,CAAC,CAAC,GAAG,EAAE,CAAC,CAAA;QAC3B,CAAC;aAAM,CAAC;YACN,MAAK;QACP,CAAC;IACH,CAAC;IACD,OAAO,GAAG,CAAA;AACZ,CAAC;AAED;;GAEG;AACH,MAAM,CAAC,OAAO,OAAO,gBAAgB;IAC3B,UAAU,CAAmB;IAC7B,KAAK,CAAW;IAChB,UAAU,CAAyC;IAE3D,YAAY,EACV,IAAI,EACJ,UAAU,EACV,GAAG,EACH,OAAO,EACP,MAAM,EACN,aAAa,EACb,OAAO,EACP,MAAM,EACN,aAAa,EACb,cAAc,GAAG,CAAC,GAAG,CAAC,IAAI,EAAE,GAY7B;QACC,IAAI,CAAC,UAAU,GAAG,iBAAiB,CAAC,UAAU,EAAE,IAAI,EAAE,GAAG,CAAC,CAAA;QAC1D,IAAI,CAAC,KAAK,GAAG,YAAY,CAAC;YACxB,aAAa;YACb,aAAa;YACb,OAAO;YACP,OAAO;YACP,MAAM;YACN,MAAM;YACN,IAAI;YACJ,GAAG;SACJ,CAAC,CAAA;QAEF,IAAI,CAAC,UAAU,GAAG,IAAI,qBAAqB,CAAmB;YAC5D,KAAK,EAAE,IAAI,GAAG,CAAC,EAAE,OAAO,EAAE,IAAI,CAAC,KAAK,CAAC,cAAc,GAAG,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,EAAE,CAAC;YACnE,IAAI,EAAE,CAAC,IAAW,EAAE,MAAoB,EAAE,EAAE,CAC1C,IAAI,CAAC,SAAS,CAAC,IAAI,EAAE,EAAE,MAAM,EAAE,CAAC;SACnC,CAAC,CAAA;IACJ,CAAC;IAED;;;;OAIG;IACH,KAAK,CAAC,eAAe,CACnB,OAA0D,EAC1D,OAAgB,EAAE;QAElB,MAAM,GAAG,GAAY,EAAE,CAAA;QACvB,KAAK,MAAM,EAAE,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,IAAI,OAAO,EAAE,CAAC;YAC9C,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,cAAc,CAAC,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,IAAI,CAAC,CAAA;YACzE,KAAK,MAAM,KAAK,IAAI,MAAM,EAAE,CAAC;gBAC3B,GAAG,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;YACjB,CAAC;QACH,CAAC;QACD,IAAI,KAAK,GAAG,CAAC,CAAA;QACb,KAAK,MAAM,KAAK,IAAI,cAAc,CAAC,GAAG,CAAC,EAAE,CAAC;YACxC,KAAK,IAAI,KAAK,CAAC,WAAW,EAAE,CAAA;QAC9B,CAAC;QACD,OAAO,KAAK,CAAA;IACd,CAAC;IAED;;;;;OAKG;IACH,KAAK,CAAC,QAAQ,CACZ,OAAe,EACf,CAAqB,EACrB,CAAqB,EACrB,IAAqC;QAErC,IAAI,MAA+B,CAAA;QACnC,IAAI,OAAO,GAAY,EAAE,CAAA;QACzB,IAAI,QAA0B,CAAA;QAC9B,IAAI,UAAsC,CAAA;QAE1C,IAAI,OAAO,IAAI,KAAK,UAAU,EAAE,CAAC;YAC/B,QAAQ,GAAG,IAAI,CAAA;QACjB,CAAC;aAAM,CAAC;YACN,OAAO,GAAG,IAAI,CAAA;YACd,QAAQ,GAAG,IAAI,CAAC,YAAY,CAAA;YAC5B,MAAM,GAAG,IAAI,CAAC,MAAM,CAAA;YACpB,UAAU,GAAG,IAAI,CAAC,UAAU,CAAA;QAC9B,CAAC;QAED,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,CAAA;QACtD,MAAM,KAAK,GAAG,CAAC,IAAI,CAAC,CAAA;QACpB,MAAM,GAAG,GAAG,CAAC,IAAI,QAAQ,CAAC,YAAY,CAAA;QACtC,IAAI,KAAK,GAAG,GAAG,EAAE,CAAC;YAChB,MAAM,IAAI,SAAS,CACjB,4EAA4E,CAC7E,CAAA;QACH,CAAC;QACD,IAAI,KAAK,KAAK,GAAG,EAAE,CAAC;YAClB,OAAM;QACR,CAAC;QAED,MAAM,MAAM,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,cAAc,CAAC,OAAO,EAAE,KAAK,EAAE,GAAG,EAAE,OAAO,CAAC,CAAA;QAE5E,MAAM,KAAK,GAAG,QAAQ,CAAC,MAAM,KAAK,KAAK,CAAA;QACvC,MAAM,MAAM,GAAG,QAAQ,CAAC,aAAa,CAAC,GAAG,IAAI,CAAC,CAAA;QAC9C,MAAM,QAAQ,GAAG,QAAQ,CAAC,aAAa,CAAC,KAAK,IAAI,CAAC,CAAA;QAClD,MAAM,MAAM,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,aAAa,CAAC,GAAG,IAAI,CAAC,CAAA;QAC1D,MAAM,SAAS,GAAG,IAAI,CAAC,GAAG,CAAC,MAAM,EAAE,QAAQ,EAAE,MAAM,CAAC,CAAA;QACpD,MAAM,YAAY,GAAG,QAAQ,CAAC,QAAQ,EAAE,UAAU,CAAC,CAAC,CAAC,CAAA;QACrD,MAAM,gBAAgB,GACpB,QAAQ,CAAC,cAAc,KAAK,gBAAgB,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;QAEvD,MAAM,OAAO,GAAG,IAAI,WAAW,EAAE,CAAA;QACjC,MAAM,OAAO,GAAG,IAAI,WAAW,EAAE,CAAA;QACjC,MAAM,kBAAkB,GAAG,OAAO,CAAC,MAAM,CAAC,OAAO,CAAC,CAAA;QAClD,0EAA0E;QAC1E,6EAA6E;QAC7E,MAAM,IAAI,GAAG,IAAI,UAAU,CAAC,SAAS,GAAG,CAAC,CAAC,CAAA;QAE1C,IAAI,UAAU,GAAG,CAAC,CAAA;QAClB,KAAK,MAAM,CAAC,IAAI,MAAM,EAAE,CAAC;YACvB,UAAU,IAAI,CAAC,CAAC,WAAW,EAAE,CAAA;QAC/B,CAAC;QACD,IAAI,eAAe,GAAG,CAAC,CAAA;QACvB,UAAU,EAAE,CAAC,CAAC,EAAE,UAAU,CAAC,CAAA;QAE3B,KAAK,MAAM,CAAC,IAAI,MAAM,EAAE,CAAC;YACvB,MAAM,EAAE,MAAM,EAAE,UAAU,EAAE,UAAU,EAAE,GAAG,MAAM,IAAI,CAAC,UAAU,CAAC,GAAG,CAClE,CAAC,CAAC,QAAQ,EAAE,EACZ,CAAC,EACD,MAAM,CACP,CAAA;YACD,eAAe,IAAI,CAAC,CAAC,WAAW,EAAE,CAAA;YAClC,UAAU,EAAE,CAAC,eAAe,EAAE,UAAU,CAAC,CAAA;YACzC,MAAM,gBAAgB,GAAG,CAAC,CAAC,IAAI,CAAC,YAAY,CAAA;YAE5C,IAAI,UAAU,GAAG,CAAC,CAAA;YAClB,IAAI,GAAG,GAAG,CAAC,CAAA;YAEX,OAAO,UAAU,GAAG,MAAM,CAAC,MAAM,EAAE,CAAC;gBAClC,MAAM,CAAC,GAAG,MAAM,CAAC,OAAO,CAAC,OAAO,EAAE,UAAU,CAAC,CAAA;gBAC7C,IAAI,CAAC,KAAK,CAAC,CAAC,EAAE,CAAC;oBACb,MAAK;gBACP,CAAC;gBAED,MAAM,MAAM,GAAG,UAAU,GAAG,gBAAgB,CAAA;gBAC5C,OAAO,GAAG,GAAG,UAAU,CAAC,MAAM,IAAI,MAAM,IAAI,UAAU,CAAC,GAAG,CAAE,EAAE,CAAC;oBAC7D,GAAG,EAAE,CAAA;gBACP,CAAC;gBAED,kBAAkB;gBAClB,IAAI,YAAY,KAAK,SAAS,IAAI,MAAM,CAAC,UAAU,CAAC,KAAK,YAAY,EAAE,CAAC;oBACtE,UAAU,GAAG,CAAC,GAAG,CAAC,CAAA;oBAClB,SAAQ;gBACV,CAAC;gBAED,mEAAmE;gBACnE,qEAAqE;gBACrE,0CAA0C;gBAC1C,IAAI,CAAC,CAAC,CAAC,GAAG,UAAU,GAAG,CAAC,CAAA;gBACxB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,SAAS,EAAE,CAAC,EAAE,EAAE,CAAC;oBACnC,MAAM,IAAI,GAAG,IAAI,CAAC,CAAC,CAAE,CAAA;oBACrB,MAAM,MAAM,GAAG,IAAI,GAAG,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,GAAG,EAAE,IAAI,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;oBAC5D,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,MAAM,KAAK,CAAC,CAAC,IAAI,MAAM,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,MAAM,CAAA;gBACzD,CAAC;gBAED,kCAAkC;gBAClC,MAAM,QAAQ,GAAG,IAAI,CAAC,MAAM,GAAG,CAAC,CAAE,GAAG,CAAC,CAAA;gBACtC,MAAM,MAAM,GAAG,IAAI,CAAC,MAAM,CAAE,CAAA;gBAC5B,MAAM,MAAM,GAAG,MAAM,GAAG,QAAQ,CAAA;gBAChC,IAAI,MAAM,KAAK,kBAAkB,CAAC,MAAM,EAAE,CAAC;oBACzC,UAAU,GAAG,CAAC,GAAG,CAAC,CAAA;oBAClB,SAAQ;gBACV,CAAC;gBACD,IAAI,QAAQ,GAAG,IAAI,CAAA;gBACnB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;oBAChC,IAAI,MAAM,CAAC,QAAQ,GAAG,CAAC,CAAC,KAAK,kBAAkB,CAAC,CAAC,CAAC,EAAE,CAAC;wBACnD,QAAQ,GAAG,KAAK,CAAA;wBAChB,MAAK;oBACP,CAAC;gBACH,CAAC;gBACD,IAAI,CAAC,QAAQ,EAAE,CAAC;oBACd,UAAU,GAAG,CAAC,GAAG,CAAC,CAAA;oBAClB,SAAQ;gBACV,CAAC;gBAED,yBAAyB;gBACzB,MAAM,eAAe,GACnB,iBAAiB,CAAC,MAAM,EAAE,IAAI,CAAC,QAAQ,GAAG,CAAC,CAAE,GAAG,CAAC,EAAE,IAAI,CAAC,QAAQ,CAAE,CAAC;oBACnE,gBAAgB,CAAA;gBAElB,IAAI,eAAe,IAAI,GAAG,EAAE,CAAC;oBAC3B,OAAM;gBACR,CAAC;gBAED,uBAAuB;gBACvB,IAAI,aAAqB,CAAA;gBACzB,IAAI,MAAM,KAAK,CAAC,IAAI,MAAM,KAAK,QAAQ,EAAE,CAAC;oBACxC,aAAa,GAAG,eAAe,GAAG,CAAC,CAAA;gBACrC,CAAC;qBAAM,IAAI,KAAK,EAAE,CAAC;oBACjB,aAAa,GAAG,SAAS,CACvB,MAAM,EACN,eAAe,EACf,IAAI,CAAC,CAAC,CAAE,GAAG,CAAC,EACZ,IAAI,CAAC,CAAC,CAAE,EACR,IAAI,CAAC,MAAM,GAAG,CAAC,CAAE,GAAG,CAAC,EACrB,IAAI,CAAC,MAAM,CAAE,CACd,CAAA;gBACH,CAAC;qBAAM,CAAC;oBACN,aAAa,GAAG,iBAAiB,CAC/B,MAAM,EACN,IAAI,CAAC,MAAM,GAAG,CAAC,CAAE,GAAG,CAAC,EACrB,IAAI,CAAC,MAAM,CAAE,CACd,CAAA;gBACH,CAAC;gBAED,IAAI,aAAa,GAAG,KAAK,EAAE,CAAC;oBAC1B,wDAAwD;oBACxD,MAAM,OAAO,GAAG,MAAM,CAAC,CAAC,GAAG,CAAC,CAAC,KAAK,eAAe,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;oBAC7D,MAAM,IAAI,GAAG,OAAO,CAAC,MAAM,CAAC,MAAM,CAAC,QAAQ,CAAC,UAAU,EAAE,OAAO,CAAC,CAAC,CAAA;oBACjE,QAAQ,CACN,IAAI,EACJ,mBAAmB,CACjB,UAAU,EACV,UAAU,EACV,GAAG,EACH,UAAU,EACV,gBAAgB,CACjB,EACD,eAAe,EACf,aAAa,CACd,CAAA;gBACH,CAAC;gBACD,UAAU,GAAG,CAAC,GAAG,CAAC,CAAA;YACpB,CAAC;QACH,CAAC;IACH,CAAC;IAED,gBAAgB;IAChB,KAAK,CAAC,WAAW,CAAC,OAAgB,EAAE;QAClC,OAAO,IAAI,CAAC,KAAK,CAAC,WAAW,CAAC,IAAI,CAAC,CAAA;IACrC,CAAC;IAED,KAAK,CAAC,eAAe,CAAC,OAAgB,EAAE;QACtC,MAAM,EAAE,aAAa,EAAE,QAAQ,EAAE,YAAY,EAAE,GAC7C,MAAM,IAAI,CAAC,WAAW,CAAC,IAAI,CAAC,CAAA;QAE9B,MAAM,QAAQ,GAAG,CAAC,aAAa,EAAE,aAAa,IAAI,CAAC,CAAC,GAAG,YAAY,CAAA;QACnE,uEAAuE;QACvE,8DAA8D;QAE9D,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,QAAQ,EAAE,CAAC,EAAE,IAAI,CAAC,CAAA;QACzD,MAAM,KAAK,GAAG,CAAC,MAAM,KAAK,CAAC,GAAG,CAAC,CAAe,CAAA;QAE9C,0CAA0C;QAC1C,IAAI,QAAQ,EAAE,CAAC;YACb,IAAI,WAAW,GAAG,CAAC,CAAC,CAAA;YACpB,MAAM,QAAQ,GAAG,QAAQ,CAAC,UAAU,CAAC,CAAC,CAAC,CAAA;YAEvC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC;gBAC7C,MAAM,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,CAAA;gBACrB,IAAI,CAAC,KAAK,WAAW,GAAG,CAAC,IAAI,IAAI,KAAK,QAAQ,EAAE,CAAC;oBAC/C,MAAK;gBACP,CAAC;gBACD,IAAI,IAAI,KAAK,OAAO,EAAE,CAAC;oBACrB,WAAW,GAAG,CAAC,CAAA;gBACjB,CAAC;YACH,CAAC;YACD,OAAO,KAAK,CAAC,QAAQ,CAAC,CAAC,EAAE,WAAW,GAAG,CAAC,CAAC,CAAA;QAC3C,CAAC;QACD,OAAO,KAAK,CAAA;IACd,CAAC;IAED,KAAK,CAAC,SAAS,CAAC,OAAgB,EAAE;QAChC,MAAM,KAAK,GAAG,MAAM,IAAI,CAAC,eAAe,CAAC,IAAI,CAAC,CAAA;QAC9C,OAAO,IAAI,WAAW,EAAE,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;IACxC,CAAC;IAED,KAAK,CAAC,yBAAyB,CAAC,OAAgB,EAAE;QAChD,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,WAAW,CAAC,IAAI,CAAC,CAAA;QAC7C,OAAO,QAAQ,CAAC,WAAW,CAAA;IAC7B,CAAC;IAED,6CAA6C;IAC7C,KAAK,CAAC,SAAS,CAAC,OAAe,EAAE,OAAgB,EAAE;QACjD,OAAO,IAAI,CAAC,KAAK,CAAC,SAAS,CAAC,OAAO,EAAE,IAAI,CAAC,CAAA;IAC5C,CAAC;IAED,gBAAgB;IAChB,KAAK,CAAC,SAAS,CAAC,CAAQ,EAAE,OAAgB,EAAE;QAC1C,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,UAAU,CAAC,IAAI,CACpC,CAAC,CAAC,WAAW,EAAE,EACf,CAAC,CAAC,IAAI,CAAC,aAAa,EACpB,IAAI,CACL,CAAA;QACD,OAAO,eAAe,CAAC,GAAG,EAAE,CAAC,CAAC,CAAA;IAChC,CAAC;CACF"}

package/esm/tbi.js

@@ -4,21 +4,23 @@ import IndexFile from "./indexFile.js";
 import { clampChunkEnds, findFirstData, memoizeByRefId, optimizeChunks, parseAuxData, parsePseudoBin, } from "./util.js";
 import { fromBytes } from "./virtualOffset.js";
 const TBI_MAGIC = 21_578_324; // TBI\1
+// TBI is always the fixed depth-5, 14-bit-leaf binning scheme
+const TBI_DEPTH = 5;
+const TBI_MAX_REF_LENGTH = 2 ** (14 + TBI_DEPTH * 3);
 /**
  * calculate the list of bins that may overlap with region [beg,end)
  * (zero-based half-open)
  */
 function reg2bins(beg, end) {
-    beg += 1; // < convert to 1-based closed
-    end -= 1;
-    return [
-        [0, 0],
-        [1 + (beg >> 26), 1 + (end >> 26)],
-        [9 + (beg >> 23), 9 + (end >> 23)],
-        [73 + (beg >> 20), 73 + (end >> 20)],
-        [585 + (beg >> 17), 585 + (end >> 17)],
-        [4681 + (beg >> 14), 4681 + (end >> 14)],
-    ];
+    // Clamp into the binning scheme's range. Past 2**31 the shifts below
+    // truncate to int32 and go negative, which would silently yield no bins.
+    const b = Math.min(Math.max(beg, 0), TBI_MAX_REF_LENGTH);
+    const e = Math.min(end, TBI_MAX_REF_LENGTH) - 1;
+    const bins = [];
+    if (b <= e) {
+        bins.push([0, 0], [1 + (b >> 26), 1 + (e >> 26)], [9 + (b >> 23), 9 + (e >> 23)], [73 + (b >> 20), 73 + (e >> 20)], [585 + (b >> 17), 585 + (e >> 17)], [4681 + (b >> 14), 4681 + (e >> 14)]);
+    }
+    return bins;
 }
 export default class TabixIndex extends IndexFile {
     /** @internal */
@@ -28,14 +30,12 @@ export default class TabixIndex extends IndexFile {
             onProgress: opts.onProgress,
         });
         const bytes = (await unzip(buf));
-        const dataView = new DataView(bytes.buffer);
+        const dataView = new DataView(bytes.buffer, bytes.byteOffset, bytes.byteLength);
         if (dataView.getUint32(0, true) !== TBI_MAGIC) {
             throw new Error('Not a TBI file');
         }
         const refCount = dataView.getUint32(4, true);
-        const depth = 5;
-        const maxBinNumber = ((1 << ((depth + 1) * 3)) - 1) / 7;
-        const maxRefLength = 2 ** (14 + depth * 3);
+        const maxBinNumber = ((1 << ((TBI_DEPTH + 1) * 3)) - 1) / 7;
         // TBI header layout matches CSI aux data; parseAuxData handles both
         const { refNameToId, refIdToName, coordinateType, format, columnNumbers, metaChar, skipLines, } = parseAuxData(bytes, 8);
         // nameSectionLength is at TBI offset 32; re-read to find where bin data starts
@@ -123,7 +123,7 @@ export default class TabixIndex extends IndexFile {
             indices: memoizeByRefId(getIndices),
             metaChar,
             maxBinNumber,
-            maxRefLength,
+            maxRefLength: TBI_MAX_REF_LENGTH,
             skipLines,
             firstDataLine,
             columnNumbers,
@@ -135,9 +135,6 @@ export default class TabixIndex extends IndexFile {
         };
     }
     async blocksForRange(refName, min, max, opts = {}) {
-        if (min < 0) {
-            min = 0;
-        }
         const indexData = await this.parse(opts);
         const refId = indexData.refNameToId[refName];
         if (refId === undefined) {
@@ -147,12 +144,12 @@ export default class TabixIndex extends IndexFile {
         if (!ba) {
             return [];
         }
-        const linearIndex = ba.linearIndex ?? [];
-        // min >= 2**31 overflows int32 and produces a negative >> 14 result —
-        // query is well beyond the indexed range
-        if (linearIndex.length > 0 && min >= 2 ** 31) {
+        if (min > TBI_MAX_REF_LENGTH) {
             console.warn('querying outside of possible tabix range');
         }
+        // clamp before the >> 14 below, which would truncate to int32 and go
+        // negative past 2**31
+        const beg = Math.min(Math.max(min, 0), TBI_MAX_REF_LENGTH);
         const overlappingBins = reg2bins(min, max); // List of bin #s that overlap min, max
         const chunks = [];
         // Find chunks in overlapping bins.  Leaf bins (< 4681) are not pruned
@@ -169,7 +166,8 @@ export default class TabixIndex extends IndexFile {
         // The linear index is monotonically non-decreasing, so the minimum virtual
         // offset for chunks that could overlap [min, ...) is at index minLin.
         // SYNC: ~/src/gmod/bam-js/src/bai.ts getLowestChunk
-        const lowest = linearIndex[Math.min(min >> 14, linearIndex.length - 1)];
+        const linearIndex = ba.linearIndex;
+        const lowest = linearIndex?.[Math.min(beg >> 14, linearIndex.length - 1)];
         return optimizeChunks(chunks, lowest);
     }
 }

package/esm/tbi.js.map

@@ -1 +1 @@
-{"version":3,"file":"tbi.js","sourceRoot":"","sources":["../src/tbi.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,uBAAuB,CAAA;AAE7C,OAAO,KAAK,MAAM,YAAY,CAAA;AAC9B,OAAO,SAAS,MAAM,gBAAgB,CAAA;AACtC,OAAO,EACL,cAAc,EACd,aAAa,EACb,cAAc,EACd,cAAc,EACd,YAAY,EACZ,cAAc,GACf,MAAM,WAAW,CAAA;AAClB,OAAO,EAAE,SAAS,EAAE,MAAM,oBAAoB,CAAA;AAK9C,MAAM,SAAS,GAAG,UAAU,CAAA,CAAC,QAAQ;AAErC;;;GAGG;AACH,SAAS,QAAQ,CAAC,GAAW,EAAE,GAAW;IACxC,GAAG,IAAI,CAAC,CAAA,CAAC,8BAA8B;IACvC,GAAG,IAAI,CAAC,CAAA;IACR,OAAO;QACL,CAAC,CAAC,EAAE,CAAC,CAAC;QACN,CAAC,CAAC,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE,CAAC,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,CAAC;QAClC,CAAC,CAAC,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE,CAAC,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,CAAC;QAClC,CAAC,EAAE,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE,EAAE,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,CAAC;QACpC,CAAC,GAAG,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE,GAAG,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,CAAC;QACtC,CAAC,IAAI,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE,IAAI,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,CAAC;KAChC,CAAA;AACZ,CAAC;AAED,MAAM,CAAC,OAAO,OAAO,UAAW,SAAQ,SAAS;IAC/C,gBAAgB;IAChB,KAAK,CAAC,MAAM,CAAC,OAAgB,EAAE;QAC7B,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC;YACzC,MAAM,EAAE,IAAI,CAAC,MAAM;YACnB,UAAU,EAAE,IAAI,CAAC,UAAU;SAC5B,CAAC,CAAA;QACF,MAAM,KAAK,GAAG,CAAC,MAAM,KAAK,CAAC,GAAG,CAAC,CAAe,CAAA;QAC9C,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;QAE3C,IAAI,QAAQ,CAAC,SAAS,CAAC,CAAC,EAAE,IAAI,CAAC,KAAK,SAAS,EAAE,CAAC;YAC9C,MAAM,IAAI,KAAK,CAAC,gBAAgB,CAAC,CAAA;QACnC,CAAC;QAED,MAAM,QAAQ,GAAG,QAAQ,CAAC,SAAS,CAAC,CAAC,EAAE,IAAI,CAAC,CAAA;QAC5C,MAAM,KAAK,GAAG,CAAC,CAAA;QACf,MAAM,YAAY,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,KAAK,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAA;QACvD,MAAM,YAAY,GAAG,CAAC,IAAI,CAAC,EAAE,GAAG,KAAK,GAAG,CAAC,CAAC,CAAA;QAE1C,oEAAoE;QACpE,MAAM,EACJ,WAAW,EACX,WAAW,EACX,cAAc,EACd,MAAM,EACN,aAAa,EACb,QAAQ,EACR,SAAS,GACV,GAAG,YAAY,CAAC,KAAK,EAAE,CAAC,CAAC,CAAA;QAC1B,+EAA+E;QAC/E,MAAM,iBAAiB,GAAG,QAAQ,CAAC,QAAQ,CAAC,EAAE,EAAE,IAAI,CAAC,CAAA;QAErD,iEAAiE;QACjE,mEAAmE;QACnE,IAAI,IAAI,GAAG,EAAE,GAAG,iBAAiB,CAAA;QACjC,IAAI,aAAwC,CAAA;QAC5C,MAAM,OAAO,GAAa,EAAE,CAAA;QAE5B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,EAAE,CAAC,EAAE,EAAE,CAAC;YAClC,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;YAClB,MAAM,QAAQ,GAAG,QAAQ,CAAC,QAAQ,CAAC,IAAI,EAAE,IAAI,CAAC,CAAA;YAC9C,IAAI,IAAI,CAAC,CAAA;YACT,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,EAAE,CAAC,EAAE,EAAE,CAAC;gBAClC,MAAM,GAAG,GAAG,QAAQ,CAAC,SAAS,CAAC,IAAI,EAAE,IAAI,CAAC,CAAA;gBAC1C,IAAI,IAAI,CAAC,CAAA;gBACT,MAAM,UAAU,GAAG,QAAQ,CAAC,QAAQ,CAAC,IAAI,EAAE,IAAI,CAAC,CAAA;gBAChD,IAAI,IAAI,CAAC,CAAA;gBACT,IAAI,GAAG,GAAG,YAAY,GAAG,CAAC,EAAE,CAAC;oBAC3B,MAAM,IAAI,KAAK,CACb,4DAA4D,CAC7D,CAAA;gBACH,CAAC;qBAAM,IAAI,GAAG,KAAK,YAAY,GAAG,CAAC,EAAE,CAAC;oBACpC,IAAI,IAAI,EAAE,GAAG,UAAU,CAAA;gBACzB,CAAC;qBAAM,CAAC;oBACN,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,EAAE,CAAC,EAAE,EAAE,CAAC;wBACpC,aAAa,GAAG,aAAa,CAAC,aAAa,EAAE,SAAS,CAAC,KAAK,EAAE,IAAI,CAAC,CAAC,CAAA;wBACpE,IAAI,IAAI,EAAE,CAAA;oBACZ,CAAC;gBACH,CAAC;YACH,CAAC;YACD,MAAM,WAAW,GAAG,QAAQ,CAAC,QAAQ,CAAC,IAAI,EAAE,IAAI,CAAC,CAAA;YACjD,IAAI,IAAI,CAAC,CAAA;YACT,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,WAAW,EAAE,CAAC,EAAE,EAAE,CAAC;gBACrC,aAAa,GAAG,aAAa,CAAC,aAAa,EAAE,SAAS,CAAC,KAAK,EAAE,IAAI,CAAC,CAAC,CAAA;gBACpE,IAAI,IAAI,CAAC,CAAA;YACX,CAAC;QACH,CAAC;QAED,SAAS,UAAU,CAAC,KAAa;YAC/B,MAAM,KAAK,GAAG,OAAO,CAAC,KAAK,CAAC,CAAA;YAC5B,IAAI,KAAK,KAAK,SAAS,EAAE,CAAC;gBACxB,OAAO,SAAS,CAAA;YAClB,CAAC;YACD,IAAI,GAAG,GAAG,KAAK,CAAA;YACf,MAAM,QAAQ,GAAG,QAAQ,CAAC,QAAQ,CAAC,GAAG,EAAE,IAAI,CAAC,CAAA;YAC7C,GAAG,IAAI,CAAC,CAAA;YACR,MAAM,QAAQ,GAA4B,EAAE,CAAA;YAC5C,IAAI,KAAK,CAAA;YACT,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,EAAE,CAAC,EAAE,EAAE,CAAC;gBAClC,MAAM,GAAG,GAAG,QAAQ,CAAC,SAAS,CAAC,GAAG,EAAE,IAAI,CAAC,CAAA;gBACzC,GAAG,IAAI,CAAC,CAAA;gBACR,IAAI,GAAG,GAAG,YAAY,GAAG,CAAC,EAAE,CAAC;oBAC3B,MAAM,IAAI,KAAK,CACb,4DAA4D,CAC7D,CAAA;gBACH,CAAC;qBAAM,IAAI,GAAG,KAAK,YAAY,GAAG,CAAC,EAAE,CAAC;oBACpC,MAAM,UAAU,GAAG,QAAQ,CAAC,QAAQ,CAAC,GAAG,EAAE,IAAI,CAAC,CAAA;oBAC/C,GAAG,IAAI,CAAC,CAAA;oBACR,IAAI,UAAU,KAAK,CAAC,EAAE,CAAC;wBACrB,KAAK,GAAG,cAAc,CAAC,KAAK,EAAE,GAAG,GAAG,EAAE,CAAC,CAAA;oBACzC,CAAC;oBACD,GAAG,IAAI,EAAE,GAAG,UAAU,CAAA;gBACxB,CAAC;qBAAM,CAAC;oBACN,MAAM,UAAU,GAAG,QAAQ,CAAC,QAAQ,CAAC,GAAG,EAAE,IAAI,CAAC,CAAA;oBAC/C,GAAG,IAAI,CAAC,CAAA;oBACR,MAAM,MAAM,GAAG,KAAK,CAAC,IAAI,CAAQ,EAAE,MAAM,EAAE,UAAU,EAAE,CAAC,CAAA;oBACxD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,EAAE,CAAC,EAAE,EAAE,CAAC;wBACpC,MAAM,CAAC,CAAC,CAAC,GAAG,IAAI,KAAK,CACnB,SAAS,CAAC,KAAK,EAAE,GAAG,CAAC,EACrB,SAAS,CAAC,KAAK,EAAE,GAAG,GAAG,CAAC,CAAC,EACzB,GAAG,CACJ,CAAA;wBACD,GAAG,IAAI,EAAE,CAAA;oBACX,CAAC;oBACD,QAAQ,CAAC,GAAG,CAAC,GAAG,MAAM,CAAA;gBACxB,CAAC;YACH,CAAC;YACD,MAAM,WAAW,GAAG,QAAQ,CAAC,QAAQ,CAAC,GAAG,EAAE,IAAI,CAAC,CAAA;YAChD,GAAG,IAAI,CAAC,CAAA;YACR,MAAM,WAAW,GAAG,KAAK,CAAC,IAAI,CAAgB,EAAE,MAAM,EAAE,WAAW,EAAE,CAAC,CAAA;YACtE,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,WAAW,EAAE,CAAC,EAAE,EAAE,CAAC;gBACrC,WAAW,CAAC,CAAC,CAAC,GAAG,SAAS,CAAC,KAAK,EAAE,GAAG,CAAC,CAAA;gBACtC,GAAG,IAAI,CAAC,CAAA;YACV,CAAC;YACD,cAAc,CACZ,MAAM,CAAC,MAAM,CAAC,QAAQ,CAAC,CAAC,IAAI,EAAE,EAC9B,WAAW,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,aAAa,CAAC,CACtC,CAAA;YACD,OAAO,EAAE,QAAQ,EAAE,WAAW,EAAE,KAAK,EAAE,CAAA;QACzC,CAAC;QAED,OAAO;YACL,OAAO,EAAE,cAAc,CAAC,UAAU,CAAC;YACnC,QAAQ;YACR,YAAY;YACZ,YAAY;YACZ,SAAS;YACT,aAAa;YACb,aAAa;YACb,cAAc;YACd,MAAM;YACN,WAAW;YACX,WAAW;YACX,YAAY,EAAE,CAAC,IAAI,EAAE;SACtB,CAAA;IACH,CAAC;IAED,KAAK,CAAC,cAAc,CAClB,OAAe,EACf,GAAW,EACX,GAAW,EACX,OAAgB,EAAE;QAElB,IAAI,GAAG,GAAG,CAAC,EAAE,CAAC;YACZ,GAAG,GAAG,CAAC,CAAA;QACT,CAAC;QAED,MAAM,SAAS,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;QACxC,MAAM,KAAK,GAAG,SAAS,CAAC,WAAW,CAAC,OAAO,CAAC,CAAA;QAC5C,IAAI,KAAK,KAAK,SAAS,EAAE,CAAC;YACxB,OAAO,EAAE,CAAA;QACX,CAAC;QACD,MAAM,EAAE,GAAG,SAAS,CAAC,OAAO,CAAC,KAAK,CAAC,CAAA;QACnC,IAAI,CAAC,EAAE,EAAE,CAAC;YACR,OAAO,EAAE,CAAA;QACX,CAAC;QAED,MAAM,WAAW,GAAG,EAAE,CAAC,WAAW,IAAI,EAAE,CAAA;QACxC,sEAAsE;QACtE,yCAAyC;QACzC,IAAI,WAAW,CAAC,MAAM,GAAG,CAAC,IAAI,GAAG,IAAI,CAAC,IAAI,EAAE,EAAE,CAAC;YAC7C,OAAO,CAAC,IAAI,CAAC,0CAA0C,CAAC,CAAA;QAC1D,CAAC;QAED,MAAM,eAAe,GAAG,QAAQ,CAAC,GAAG,EAAE,GAAG,CAAC,CAAA,CAAC,uCAAuC;QAClF,MAAM,MAAM,GAAY,EAAE,CAAA;QAE1B,sEAAsE;QACtE,KAAK,MAAM,CAAC,KAAK,EAAE,GAAG,CAAC,IAAI,eAAe,EAAE,CAAC;YAC3C,KAAK,IAAI,GAAG,GAAG,KAAK,EAAE,GAAG,IAAI,GAAG,EAAE,GAAG,EAAE,EAAE,CAAC;gBACxC,MAAM,SAAS,GAAG,EAAE,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAA;gBAClC,IAAI,SAAS,EAAE,CAAC;oBACd,KAAK,MAAM,CAAC,IAAI,SAAS,EAAE,CAAC;wBAC1B,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;oBAChB,CAAC;gBACH,CAAC;YACH,CAAC;QACH,CAAC;QAED,2EAA2E;QAC3E,sEAAsE;QACtE,oDAAoD;QACpD,MAAM,MAAM,GAAG,WAAW,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,IAAI,EAAE,EAAE,WAAW,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAA;QAEvE,OAAO,cAAc,CAAC,MAAM,EAAE,MAAM,CAAC,CAAA;IACvC,CAAC;CACF"}
+{"version":3,"file":"tbi.js","sourceRoot":"","sources":["../src/tbi.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,uBAAuB,CAAA;AAE7C,OAAO,KAAK,MAAM,YAAY,CAAA;AAC9B,OAAO,SAAS,MAAM,gBAAgB,CAAA;AACtC,OAAO,EACL,cAAc,EACd,aAAa,EACb,cAAc,EACd,cAAc,EACd,YAAY,EACZ,cAAc,GACf,MAAM,WAAW,CAAA;AAClB,OAAO,EAAE,SAAS,EAAE,MAAM,oBAAoB,CAAA;AAK9C,MAAM,SAAS,GAAG,UAAU,CAAA,CAAC,QAAQ;AAErC,8DAA8D;AAC9D,MAAM,SAAS,GAAG,CAAC,CAAA;AACnB,MAAM,kBAAkB,GAAG,CAAC,IAAI,CAAC,EAAE,GAAG,SAAS,GAAG,CAAC,CAAC,CAAA;AAEpD;;;GAGG;AACH,SAAS,QAAQ,CAAC,GAAW,EAAE,GAAW;IACxC,qEAAqE;IACrE,yEAAyE;IACzE,MAAM,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,CAAC,EAAE,kBAAkB,CAAC,CAAA;IACxD,MAAM,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,kBAAkB,CAAC,GAAG,CAAC,CAAA;IAC/C,MAAM,IAAI,GAAkC,EAAE,CAAA;IAC9C,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC;QACX,IAAI,CAAC,IAAI,CACP,CAAC,CAAC,EAAE,CAAC,CAAC,EACN,CAAC,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,EAC9B,CAAC,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,CAAC,EAAE,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,EAC9B,CAAC,EAAE,GAAG,CAAC,CAAC,IAAI,EAAE,CAAC,EAAE,EAAE,GAAG,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,EAChC,CAAC,GAAG,GAAG,CAAC,CAAC,IAAI,EAAE,CAAC,EAAE,GAAG,GAAG,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,EAClC,CAAC,IAAI,GAAG,CAAC,CAAC,IAAI,EAAE,CAAC,EAAE,IAAI,GAAG,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,CACrC,CAAA;IACH,CAAC;IACD,OAAO,IAAI,CAAA;AACb,CAAC;AAED,MAAM,CAAC,OAAO,OAAO,UAAW,SAAQ,SAAS;IAC/C,gBAAgB;IAChB,KAAK,CAAC,MAAM,CAAC,OAAgB,EAAE;QAC7B,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC;YACzC,MAAM,EAAE,IAAI,CAAC,MAAM;YACnB,UAAU,EAAE,IAAI,CAAC,UAAU;SAC5B,CAAC,CAAA;QACF,MAAM,KAAK,GAAG,CAAC,MAAM,KAAK,CAAC,GAAG,CAAC,CAAe,CAAA;QAC9C,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAC3B,KAAK,CAAC,MAAM,EACZ,KAAK,CAAC,UAAU,EAChB,KAAK,CAAC,UAAU,CACjB,CAAA;QAED,IAAI,QAAQ,CAAC,SAAS,CAAC,CAAC,EAAE,IAAI,CAAC,KAAK,SAAS,EAAE,CAAC;YAC9C,MAAM,IAAI,KAAK,CAAC,gBAAgB,CAAC,CAAA;QACnC,CAAC;QAED,MAAM,QAAQ,GAAG,QAAQ,CAAC,SAAS,CAAC,CAAC,EAAE,IAAI,CAAC,CAAA;QAC5C,MAAM,YAAY,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,SAAS,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAA;QAE3D,oEAAoE;QACpE,MAAM,EACJ,WAAW,EACX,WAAW,EACX,cAAc,EACd,MAAM,EACN,aAAa,EACb,QAAQ,EACR,SAAS,GACV,GAAG,YAAY,CAAC,KAAK,EAAE,CAAC,CAAC,CAAA;QAC1B,+EAA+E;QAC/E,MAAM,iBAAiB,GAAG,QAAQ,CAAC,QAAQ,CAAC,EAAE,EAAE,IAAI,CAAC,CAAA;QAErD,iEAAiE;QACjE,mEAAmE;QACnE,IAAI,IAAI,GAAG,EAAE,GAAG,iBAAiB,CAAA;QACjC,IAAI,aAAwC,CAAA;QAC5C,MAAM,OAAO,GAAa,EAAE,CAAA;QAE5B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,EAAE,CAAC,EAAE,EAAE,CAAC;YAClC,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;YAClB,MAAM,QAAQ,GAAG,QAAQ,CAAC,QAAQ,CAAC,IAAI,EAAE,IAAI,CAAC,CAAA;YAC9C,IAAI,IAAI,CAAC,CAAA;YACT,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,EAAE,CAAC,EAAE,EAAE,CAAC;gBAClC,MAAM,GAAG,GAAG,QAAQ,CAAC,SAAS,CAAC,IAAI,EAAE,IAAI,CAAC,CAAA;gBAC1C,IAAI,IAAI,CAAC,CAAA;gBACT,MAAM,UAAU,GAAG,QAAQ,CAAC,QAAQ,CAAC,IAAI,EAAE,IAAI,CAAC,CAAA;gBAChD,IAAI,IAAI,CAAC,CAAA;gBACT,IAAI,GAAG,GAAG,YAAY,GAAG,CAAC,EAAE,CAAC;oBAC3B,MAAM,IAAI,KAAK,CACb,4DAA4D,CAC7D,CAAA;gBACH,CAAC;qBAAM,IAAI,GAAG,KAAK,YAAY,GAAG,CAAC,EAAE,CAAC;oBACpC,IAAI,IAAI,EAAE,GAAG,UAAU,CAAA;gBACzB,CAAC;qBAAM,CAAC;oBACN,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,EAAE,CAAC,EAAE,EAAE,CAAC;wBACpC,aAAa,GAAG,aAAa,CAAC,aAAa,EAAE,SAAS,CAAC,KAAK,EAAE,IAAI,CAAC,CAAC,CAAA;wBACpE,IAAI,IAAI,EAAE,CAAA;oBACZ,CAAC;gBACH,CAAC;YACH,CAAC;YACD,MAAM,WAAW,GAAG,QAAQ,CAAC,QAAQ,CAAC,IAAI,EAAE,IAAI,CAAC,CAAA;YACjD,IAAI,IAAI,CAAC,CAAA;YACT,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,WAAW,EAAE,CAAC,EAAE,EAAE,CAAC;gBACrC,aAAa,GAAG,aAAa,CAAC,aAAa,EAAE,SAAS,CAAC,KAAK,EAAE,IAAI,CAAC,CAAC,CAAA;gBACpE,IAAI,IAAI,CAAC,CAAA;YACX,CAAC;QACH,CAAC;QAED,SAAS,UAAU,CAAC,KAAa;YAC/B,MAAM,KAAK,GAAG,OAAO,CAAC,KAAK,CAAC,CAAA;YAC5B,IAAI,KAAK,KAAK,SAAS,EAAE,CAAC;gBACxB,OAAO,SAAS,CAAA;YAClB,CAAC;YACD,IAAI,GAAG,GAAG,KAAK,CAAA;YACf,MAAM,QAAQ,GAAG,QAAQ,CAAC,QAAQ,CAAC,GAAG,EAAE,IAAI,CAAC,CAAA;YAC7C,GAAG,IAAI,CAAC,CAAA;YACR,MAAM,QAAQ,GAA4B,EAAE,CAAA;YAC5C,IAAI,KAAK,CAAA;YACT,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,EAAE,CAAC,EAAE,EAAE,CAAC;gBAClC,MAAM,GAAG,GAAG,QAAQ,CAAC,SAAS,CAAC,GAAG,EAAE,IAAI,CAAC,CAAA;gBACzC,GAAG,IAAI,CAAC,CAAA;gBACR,IAAI,GAAG,GAAG,YAAY,GAAG,CAAC,EAAE,CAAC;oBAC3B,MAAM,IAAI,KAAK,CACb,4DAA4D,CAC7D,CAAA;gBACH,CAAC;qBAAM,IAAI,GAAG,KAAK,YAAY,GAAG,CAAC,EAAE,CAAC;oBACpC,MAAM,UAAU,GAAG,QAAQ,CAAC,QAAQ,CAAC,GAAG,EAAE,IAAI,CAAC,CAAA;oBAC/C,GAAG,IAAI,CAAC,CAAA;oBACR,IAAI,UAAU,KAAK,CAAC,EAAE,CAAC;wBACrB,KAAK,GAAG,cAAc,CAAC,KAAK,EAAE,GAAG,GAAG,EAAE,CAAC,CAAA;oBACzC,CAAC;oBACD,GAAG,IAAI,EAAE,GAAG,UAAU,CAAA;gBACxB,CAAC;qBAAM,CAAC;oBACN,MAAM,UAAU,GAAG,QAAQ,CAAC,QAAQ,CAAC,GAAG,EAAE,IAAI,CAAC,CAAA;oBAC/C,GAAG,IAAI,CAAC,CAAA;oBACR,MAAM,MAAM,GAAG,KAAK,CAAC,IAAI,CAAQ,EAAE,MAAM,EAAE,UAAU,EAAE,CAAC,CAAA;oBACxD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,EAAE,CAAC,EAAE,EAAE,CAAC;wBACpC,MAAM,CAAC,CAAC,CAAC,GAAG,IAAI,KAAK,CACnB,SAAS,CAAC,KAAK,EAAE,GAAG,CAAC,EACrB,SAAS,CAAC,KAAK,EAAE,GAAG,GAAG,CAAC,CAAC,EACzB,GAAG,CACJ,CAAA;wBACD,GAAG,IAAI,EAAE,CAAA;oBACX,CAAC;oBACD,QAAQ,CAAC,GAAG,CAAC,GAAG,MAAM,CAAA;gBACxB,CAAC;YACH,CAAC;YACD,MAAM,WAAW,GAAG,QAAQ,CAAC,QAAQ,CAAC,GAAG,EAAE,IAAI,CAAC,CAAA;YAChD,GAAG,IAAI,CAAC,CAAA;YACR,MAAM,WAAW,GAAG,KAAK,CAAC,IAAI,CAAgB,EAAE,MAAM,EAAE,WAAW,EAAE,CAAC,CAAA;YACtE,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,WAAW,EAAE,CAAC,EAAE,EAAE,CAAC;gBACrC,WAAW,CAAC,CAAC,CAAC,GAAG,SAAS,CAAC,KAAK,EAAE,GAAG,CAAC,CAAA;gBACtC,GAAG,IAAI,CAAC,CAAA;YACV,CAAC;YACD,cAAc,CACZ,MAAM,CAAC,MAAM,CAAC,QAAQ,CAAC,CAAC,IAAI,EAAE,EAC9B,WAAW,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,aAAa,CAAC,CACtC,CAAA;YACD,OAAO,EAAE,QAAQ,EAAE,WAAW,EAAE,KAAK,EAAE,CAAA;QACzC,CAAC;QAED,OAAO;YACL,OAAO,EAAE,cAAc,CAAC,UAAU,CAAC;YACnC,QAAQ;YACR,YAAY;YACZ,YAAY,EAAE,kBAAkB;YAChC,SAAS;YACT,aAAa;YACb,aAAa;YACb,cAAc;YACd,MAAM;YACN,WAAW;YACX,WAAW;YACX,YAAY,EAAE,CAAC,IAAI,EAAE;SACtB,CAAA;IACH,CAAC;IAED,KAAK,CAAC,cAAc,CAClB,OAAe,EACf,GAAW,EACX,GAAW,EACX,OAAgB,EAAE;QAElB,MAAM,SAAS,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;QACxC,MAAM,KAAK,GAAG,SAAS,CAAC,WAAW,CAAC,OAAO,CAAC,CAAA;QAC5C,IAAI,KAAK,KAAK,SAAS,EAAE,CAAC;YACxB,OAAO,EAAE,CAAA;QACX,CAAC;QACD,MAAM,EAAE,GAAG,SAAS,CAAC,OAAO,CAAC,KAAK,CAAC,CAAA;QACnC,IAAI,CAAC,EAAE,EAAE,CAAC;YACR,OAAO,EAAE,CAAA;QACX,CAAC;QAED,IAAI,GAAG,GAAG,kBAAkB,EAAE,CAAC;YAC7B,OAAO,CAAC,IAAI,CAAC,0CAA0C,CAAC,CAAA;QAC1D,CAAC;QACD,qEAAqE;QACrE,sBAAsB;QACtB,MAAM,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,CAAC,CAAC,EAAE,kBAAkB,CAAC,CAAA;QAC1D,MAAM,eAAe,GAAG,QAAQ,CAAC,GAAG,EAAE,GAAG,CAAC,CAAA,CAAC,uCAAuC;QAClF,MAAM,MAAM,GAAY,EAAE,CAAA;QAE1B,sEAAsE;QACtE,KAAK,MAAM,CAAC,KAAK,EAAE,GAAG,CAAC,IAAI,eAAe,EAAE,CAAC;YAC3C,KAAK,IAAI,GAAG,GAAG,KAAK,EAAE,GAAG,IAAI,GAAG,EAAE,GAAG,EAAE,EAAE,CAAC;gBACxC,MAAM,SAAS,GAAG,EAAE,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAA;gBAClC,IAAI,SAAS,EAAE,CAAC;oBACd,KAAK,MAAM,CAAC,IAAI,SAAS,EAAE,CAAC;wBAC1B,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;oBAChB,CAAC;gBACH,CAAC;YACH,CAAC;QACH,CAAC;QAED,2EAA2E;QAC3E,sEAAsE;QACtE,oDAAoD;QACpD,MAAM,WAAW,GAAG,EAAE,CAAC,WAAW,CAAA;QAClC,MAAM,MAAM,GAAG,WAAW,EAAE,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,IAAI,EAAE,EAAE,WAAW,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAA;QAEzE,OAAO,cAAc,CAAC,MAAM,EAAE,MAAM,CAAC,CAAA;IACvC,CAAC;CACF"}

package/esm/util.js

@@ -70,6 +70,9 @@ export function optimizeChunks(chunks, lowest) {
 // least the true block end, so the clamped fetch still contains the whole block.
 // Shrinks both the byte estimate and the actual fetch with no extra I/O.
 export function clampChunkEnds(chunks, extraBoundaries = []) {
+    // Array#sort with a comparator beats a Float64Array numeric sort here:
+    // extraBoundaries (the linear index) arrives already sorted and TimSort
+    // exploits the existing run, which introsort cannot.
     const boundaries = [...extraBoundaries];
     for (const c of chunks) {
         boundaries.push(c.minv.blockPosition, c.maxv.blockPosition);
@@ -126,7 +129,7 @@ const tabixFormats = {
     2: 'VCF',
 };
 export function parseAuxData(bytes, offset) {
-    const dataView = new DataView(bytes.buffer);
+    const dataView = new DataView(bytes.buffer, bytes.byteOffset, bytes.byteLength);
     const formatFlags = dataView.getInt32(offset, true);
     const coordinateType = formatFlags & 0x1_00_00 ? 'zero-based-half-open' : '1-based-closed';
     const format = tabixFormats[formatFlags & 0xf];

package/esm/util.js.map

@@ -1 +1 @@
-{"version":3,"file":"util.js","sourceRoot":"","sources":["../src/util.ts"],"names":[],"mappings":"AAAA,OAAO,GAAG,MAAM,oBAAoB,CAAA;AAEpC,OAAO,KAAK,MAAM,YAAY,CAAA;AAC9B,OAAO,EAAE,uBAAuB,EAAE,MAAM,WAAW,CAAA;AAInD,qDAAqD;AACrD,MAAM,UAAU,cAAc,CAAC,MAAe,EAAE,MAAsB;IACpE,MAAM,CAAC,GAAG,MAAM,CAAC,MAAM,CAAA;IACvB,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC;QACZ,OAAO,MAAM,CAAA;IACf,CAAC;IAED,uEAAuE;IACvE,wEAAwE;IACxE,2EAA2E;IAC3E,IAAI,QAAiB,CAAA;IACrB,IAAI,MAAM,EAAE,CAAC;QACX,MAAM,WAAW,GAAG,MAAM,CAAC,aAAa,CAAA;QACxC,MAAM,UAAU,GAAG,MAAM,CAAC,YAAY,CAAA;QACtC,QAAQ,GAAG,EAAE,CAAA;QACb,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC;YAC3B,MAAM,KAAK,GAAG,MAAM,CAAC,CAAC,CAAE,CAAA;YACxB,MAAM,GAAG,GACP,KAAK,CAAC,IAAI,CAAC,aAAa,GAAG,WAAW;gBACtC,KAAK,CAAC,IAAI,CAAC,YAAY,GAAG,UAAU,CAAA;YACtC,IAAI,GAAG,GAAG,CAAC,EAAE,CAAC;gBACZ,QAAQ,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;YACtB,CAAC;QACH,CAAC;QACD,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YAC1B,OAAO,QAAQ,CAAA;QACjB,CAAC;IACH,CAAC;SAAM,CAAC;QACN,QAAQ,GAAG,MAAM,CAAA;IACnB,CAAC;IAED,QAAQ,CAAC,IAAI,CAAC,CAAC,EAAE,EAAE,EAAE,EAAE,EAAE;QACvB,MAAM,GAAG,GAAG,EAAE,CAAC,IAAI,CAAC,aAAa,GAAG,EAAE,CAAC,IAAI,CAAC,aAAa,CAAA;QACzD,OAAO,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,YAAY,GAAG,EAAE,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,CAAC,GAAG,CAAA;IACtE,CAAC,CAAC,CAAA;IAEF,4EAA4E;IAC5E,0DAA0D;IAC1D,oEAAoE;IACpE,MAAM,YAAY,GAAY,CAAC,QAAQ,CAAC,CAAC,CAAE,CAAC,CAAA;IAC5C,IAAI,YAAY,GAAG,QAAQ,CAAC,CAAC,CAAE,CAAC,IAAI,CAAC,aAAa,CAAA;IAClD,IAAI,YAAY,GAAG,QAAQ,CAAC,CAAC,CAAE,CAAC,IAAI,CAAC,aAAa,CAAA;IAElD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACzC,MAAM,KAAK,GAAG,QAAQ,CAAC,CAAC,CAAE,CAAA;QAC1B,MAAM,aAAa,GAAG,KAAK,CAAC,IAAI,CAAC,aAAa,CAAA;QAC9C,MAAM,aAAa,GAAG,KAAK,CAAC,IAAI,CAAC,aAAa,CAAA;QAC9C,IACE,aAAa,GAAG,YAAY,GAAG,MAAM;YACrC,aAAa,GAAG,YAAY,GAAG,SAAS,EACxC,CAAC;YACD,MAAM,SAAS,GAAG,YAAY,CAAC,EAAE,CAAC,CAAC,CAAC,CAAE,CAAA;YACtC,MAAM,GAAG,GACP,aAAa,GAAG,YAAY;gBAC5B,KAAK,CAAC,IAAI,CAAC,YAAY,GAAG,SAAS,CAAC,IAAI,CAAC,YAAY,CAAA;YACvD,IAAI,GAAG,GAAG,CAAC,EAAE,CAAC;gBACZ,YAAY,CAAC,YAAY,CAAC,MAAM,GAAG,CAAC,CAAC,GAAG,IAAI,KAAK,CAC/C,SAAS,CAAC,IAAI,EACd,KAAK,CAAC,IAAI,EACV,SAAS,CAAC,GAAG,EACb,KAAK,CAAC,WAAW,CAClB,CAAA;gBACD,YAAY,GAAG,aAAa,CAAA;YAC9B,CAAC;QACH,CAAC;aAAM,CAAC;YACN,YAAY,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;YACxB,YAAY,GAAG,aAAa,CAAA;YAC5B,YAAY,GAAG,aAAa,CAAA;QAC9B,CAAC;IACH,CAAC;IAED,OAAO,YAAY,CAAA;AACrB,CAAC;AAED,6EAA6E;AAC7E,kFAAkF;AAClF,kFAAkF;AAClF,iFAAiF;AACjF,kFAAkF;AAClF,iFAAiF;AACjF,yEAAyE;AACzE,MAAM,UAAU,cAAc,CAAC,MAAe,EAAE,kBAA4B,EAAE;IAC5E,MAAM,UAAU,GAAG,CAAC,GAAG,eAAe,CAAC,CAAA;IACvC,KAAK,MAAM,CAAC,IAAI,MAAM,EAAE,CAAC;QACvB,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,aAAa,EAAE,CAAC,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;IAC7D,CAAC;IACD,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAA;IAEhC,KAAK,MAAM,CAAC,IAAI,MAAM,EAAE,CAAC;QACvB,MAAM,GAAG,GAAG,CAAC,CAAC,IAAI,CAAC,aAAa,CAAA;QAChC,2CAA2C;QAC3C,IAAI,EAAE,GAAG,CAAC,CAAA;QACV,IAAI,EAAE,GAAG,UAAU,CAAC,MAAM,CAAA;QAC1B,OAAO,EAAE,GAAG,EAAE,EAAE,CAAC;YACf,MAAM,GAAG,GAAG,CAAC,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,CAAA;YAC3B,IAAI,UAAU,CAAC,GAAG,CAAE,GAAG,GAAG,EAAE,CAAC;gBAC3B,EAAE,GAAG,GAAG,CAAA;YACV,CAAC;iBAAM,CAAC;gBACN,EAAE,GAAG,GAAG,GAAG,CAAC,CAAA;YACd,CAAC;QACH,CAAC;QACD,IAAI,EAAE,GAAG,UAAU,CAAC,MAAM,EAAE,CAAC;YAC3B,CAAC,CAAC,WAAW,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,WAAW,EAAE,UAAU,CAAC,EAAE,CAAE,CAAC,CAAA;QAC1D,CAAC;IACH,CAAC;AACH,CAAC;AAED,MAAM,UAAU,aAAa,CAC3B,UAAqC,EACrC,aAA4B;IAE5B,OAAO,CAAC,UAAU,IAAI,UAAU,CAAC,SAAS,CAAC,aAAa,CAAC,GAAG,CAAC;QAC3D,CAAC,CAAC,aAAa;QACf,CAAC,CAAC,UAAU,CAAA;AAChB,CAAC;AAED,MAAM,UAAU,cAAc,CAAC,UAAsB;IACnD,MAAM,OAAO,GAAG,IAAI,WAAW,CAAC,OAAO,CAAC,CAAA;IACxC,MAAM,WAAW,GAAa,EAAE,CAAA;IAChC,MAAM,WAAW,GAA2B,EAAE,CAAA;IAC9C,IAAI,SAAS,GAAG,CAAC,CAAA;IACjB,IAAI,GAAG,GAAG,CAAC,CAAA;IACX,OAAO,GAAG,GAAG,UAAU,CAAC,MAAM,EAAE,CAAC;QAC/B,MAAM,GAAG,GAAG,UAAU,CAAC,OAAO,CAAC,CAAC,EAAE,GAAG,CAAC,CAAA;QACtC,IAAI,GAAG,KAAK,CAAC,CAAC,EAAE,CAAC;YACf,MAAK;QACP,CAAC;QACD,IAAI,GAAG,GAAG,GAAG,EAAE,CAAC;YACd,MAAM,OAAO,GAAG,OAAO,CAAC,MAAM,CAAC,UAAU,CAAC,QAAQ,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,CAAA;YAC7D,WAAW,CAAC,SAAS,CAAC,GAAG,OAAO,CAAA;YAChC,WAAW,CAAC,OAAO,CAAC,GAAG,SAAS,CAAA;QAClC,CAAC;QACD,GAAG,GAAG,GAAG,GAAG,CAAC,CAAA;QACb,SAAS,EAAE,CAAA;IACb,CAAC;IACD,OAAO,EAAE,WAAW,EAAE,WAAW,EAAE,CAAA;AACrC,CAAC;AAED,MAAM,YAAY,GAA2B;IAC3C,CAAC,EAAE,SAAS;IACZ,CAAC,EAAE,KAAK;IACR,CAAC,EAAE,KAAK;CACT,CAAA;AAED,MAAM,UAAU,YAAY,CAAC,KAAiB,EAAE,MAAc;IAC5D,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;IAC3C,MAAM,WAAW,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;IACnD,MAAM,cAAc,GAClB,WAAW,GAAG,SAAS,CAAC,CAAC,CAAC,sBAAsB,CAAC,CAAC,CAAC,gBAAgB,CAAA;IACrE,MAAM,MAAM,GAAG,YAAY,CAAC,WAAW,GAAG,GAAG,CAAC,CAAA;IAC9C,IAAI,CAAC,MAAM,EAAE,CAAC;QACZ,MAAM,IAAI,KAAK,CAAC,qCAAqC,WAAW,EAAE,CAAC,CAAA;IACrE,CAAC;IACD,MAAM,aAAa,GAAG;QACpB,GAAG,EAAE,QAAQ,CAAC,QAAQ,CAAC,MAAM,GAAG,CAAC,EAAE,IAAI,CAAC;QACxC,KAAK,EAAE,QAAQ,CAAC,QAAQ,CAAC,MAAM,GAAG,CAAC,EAAE,IAAI,CAAC;QAC1C,GAAG,EAAE,QAAQ,CAAC,QAAQ,CAAC,MAAM,GAAG,EAAE,EAAE,IAAI,CAAC;KAC1C,CAAA;IACD,MAAM,SAAS,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,GAAG,EAAE,EAAE,IAAI,CAAC,CAAA;IACtD,MAAM,QAAQ,GAAG,SAAS,CAAC,CAAC,CAAC,MAAM,CAAC,YAAY,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,SAAS,CAAA;IACvE,MAAM,SAAS,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,GAAG,EAAE,EAAE,IAAI,CAAC,CAAA;IACtD,MAAM,iBAAiB,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,GAAG,EAAE,EAAE,IAAI,CAAC,CAAA;IAC9D,MAAM,EAAE,WAAW,EAAE,WAAW,EAAE,GAAG,cAAc,CACjD,KAAK,CAAC,QAAQ,CAAC,MAAM,GAAG,EAAE,EAAE,MAAM,GAAG,EAAE,GAAG,iBAAiB,CAAC,CAC7D,CAAA;IACD,OAAO;QACL,WAAW;QACX,WAAW;QACX,SAAS;QACT,QAAQ;QACR,aAAa;QACb,MAAM;QACN,cAAc;KACf,CAAA;AACH,CAAC;AAED,MAAM,UAAU,cAAc,CAAC,KAAiB,EAAE,MAAc;IAC9D,OAAO,EAAE,SAAS,EAAE,uBAAuB,CAAC,KAAK,EAAE,MAAM,CAAC,EAAE,CAAA;AAC9D,CAAC;AAED,0DAA0D;AAC1D,MAAM,UAAU,cAAc,CAC5B,UAA4C,EAC5C,OAAO,GAAG,CAAC;IAEX,MAAM,GAAG,GAAG,IAAI,GAAG,CAAY,EAAE,OAAO,EAAE,CAAC,CAAA;IAC3C,OAAO,CAAC,KAAa,EAAE,EAAE;QACvB,MAAM,MAAM,GAAG,GAAG,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;QAC7B,IAAI,MAAM,KAAK,SAAS,EAAE,CAAC;YACzB,OAAO,MAAM,CAAA;QACf,CAAC;QACD,MAAM,MAAM,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;QAChC,IAAI,MAAM,KAAK,SAAS,EAAE,CAAC;YACzB,GAAG,CAAC,GAAG,CAAC,KAAK,EAAE,MAAM,CAAC,CAAA;QACxB,CAAC;QACD,OAAO,MAAM,CAAA;IACf,CAAC,CAAA;AACH,CAAC"}
+{"version":3,"file":"util.js","sourceRoot":"","sources":["../src/util.ts"],"names":[],"mappings":"AAAA,OAAO,GAAG,MAAM,oBAAoB,CAAA;AAEpC,OAAO,KAAK,MAAM,YAAY,CAAA;AAC9B,OAAO,EAAE,uBAAuB,EAAE,MAAM,WAAW,CAAA;AAInD,qDAAqD;AACrD,MAAM,UAAU,cAAc,CAAC,MAAe,EAAE,MAAsB;IACpE,MAAM,CAAC,GAAG,MAAM,CAAC,MAAM,CAAA;IACvB,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC;QACZ,OAAO,MAAM,CAAA;IACf,CAAC;IAED,uEAAuE;IACvE,wEAAwE;IACxE,2EAA2E;IAC3E,IAAI,QAAiB,CAAA;IACrB,IAAI,MAAM,EAAE,CAAC;QACX,MAAM,WAAW,GAAG,MAAM,CAAC,aAAa,CAAA;QACxC,MAAM,UAAU,GAAG,MAAM,CAAC,YAAY,CAAA;QACtC,QAAQ,GAAG,EAAE,CAAA;QACb,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC;YAC3B,MAAM,KAAK,GAAG,MAAM,CAAC,CAAC,CAAE,CAAA;YACxB,MAAM,GAAG,GACP,KAAK,CAAC,IAAI,CAAC,aAAa,GAAG,WAAW;gBACtC,KAAK,CAAC,IAAI,CAAC,YAAY,GAAG,UAAU,CAAA;YACtC,IAAI,GAAG,GAAG,CAAC,EAAE,CAAC;gBACZ,QAAQ,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;YACtB,CAAC;QACH,CAAC;QACD,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YAC1B,OAAO,QAAQ,CAAA;QACjB,CAAC;IACH,CAAC;SAAM,CAAC;QACN,QAAQ,GAAG,MAAM,CAAA;IACnB,CAAC;IAED,QAAQ,CAAC,IAAI,CAAC,CAAC,EAAE,EAAE,EAAE,EAAE,EAAE;QACvB,MAAM,GAAG,GAAG,EAAE,CAAC,IAAI,CAAC,aAAa,GAAG,EAAE,CAAC,IAAI,CAAC,aAAa,CAAA;QACzD,OAAO,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,IAAI,CAAC,YAAY,GAAG,EAAE,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,CAAC,GAAG,CAAA;IACtE,CAAC,CAAC,CAAA;IAEF,4EAA4E;IAC5E,0DAA0D;IAC1D,oEAAoE;IACpE,MAAM,YAAY,GAAY,CAAC,QAAQ,CAAC,CAAC,CAAE,CAAC,CAAA;IAC5C,IAAI,YAAY,GAAG,QAAQ,CAAC,CAAC,CAAE,CAAC,IAAI,CAAC,aAAa,CAAA;IAClD,IAAI,YAAY,GAAG,QAAQ,CAAC,CAAC,CAAE,CAAC,IAAI,CAAC,aAAa,CAAA;IAElD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;QACzC,MAAM,KAAK,GAAG,QAAQ,CAAC,CAAC,CAAE,CAAA;QAC1B,MAAM,aAAa,GAAG,KAAK,CAAC,IAAI,CAAC,aAAa,CAAA;QAC9C,MAAM,aAAa,GAAG,KAAK,CAAC,IAAI,CAAC,aAAa,CAAA;QAC9C,IACE,aAAa,GAAG,YAAY,GAAG,MAAM;YACrC,aAAa,GAAG,YAAY,GAAG,SAAS,EACxC,CAAC;YACD,MAAM,SAAS,GAAG,YAAY,CAAC,EAAE,CAAC,CAAC,CAAC,CAAE,CAAA;YACtC,MAAM,GAAG,GACP,aAAa,GAAG,YAAY;gBAC5B,KAAK,CAAC,IAAI,CAAC,YAAY,GAAG,SAAS,CAAC,IAAI,CAAC,YAAY,CAAA;YACvD,IAAI,GAAG,GAAG,CAAC,EAAE,CAAC;gBACZ,YAAY,CAAC,YAAY,CAAC,MAAM,GAAG,CAAC,CAAC,GAAG,IAAI,KAAK,CAC/C,SAAS,CAAC,IAAI,EACd,KAAK,CAAC,IAAI,EACV,SAAS,CAAC,GAAG,EACb,KAAK,CAAC,WAAW,CAClB,CAAA;gBACD,YAAY,GAAG,aAAa,CAAA;YAC9B,CAAC;QACH,CAAC;aAAM,CAAC;YACN,YAAY,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;YACxB,YAAY,GAAG,aAAa,CAAA;YAC5B,YAAY,GAAG,aAAa,CAAA;QAC9B,CAAC;IACH,CAAC;IAED,OAAO,YAAY,CAAA;AACrB,CAAC;AAED,6EAA6E;AAC7E,kFAAkF;AAClF,kFAAkF;AAClF,iFAAiF;AACjF,kFAAkF;AAClF,iFAAiF;AACjF,yEAAyE;AACzE,MAAM,UAAU,cAAc,CAC5B,MAAe,EACf,kBAA4B,EAAE;IAE9B,uEAAuE;IACvE,wEAAwE;IACxE,qDAAqD;IACrD,MAAM,UAAU,GAAG,CAAC,GAAG,eAAe,CAAC,CAAA;IACvC,KAAK,MAAM,CAAC,IAAI,MAAM,EAAE,CAAC;QACvB,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,aAAa,EAAE,CAAC,CAAC,IAAI,CAAC,aAAa,CAAC,CAAA;IAC7D,CAAC;IACD,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAA;IAEhC,KAAK,MAAM,CAAC,IAAI,MAAM,EAAE,CAAC;QACvB,MAAM,GAAG,GAAG,CAAC,CAAC,IAAI,CAAC,aAAa,CAAA;QAChC,2CAA2C;QAC3C,IAAI,EAAE,GAAG,CAAC,CAAA;QACV,IAAI,EAAE,GAAG,UAAU,CAAC,MAAM,CAAA;QAC1B,OAAO,EAAE,GAAG,EAAE,EAAE,CAAC;YACf,MAAM,GAAG,GAAG,CAAC,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,CAAA;YAC3B,IAAI,UAAU,CAAC,GAAG,CAAE,GAAG,GAAG,EAAE,CAAC;gBAC3B,EAAE,GAAG,GAAG,CAAA;YACV,CAAC;iBAAM,CAAC;gBACN,EAAE,GAAG,GAAG,GAAG,CAAC,CAAA;YACd,CAAC;QACH,CAAC;QACD,IAAI,EAAE,GAAG,UAAU,CAAC,MAAM,EAAE,CAAC;YAC3B,CAAC,CAAC,WAAW,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,WAAW,EAAE,UAAU,CAAC,EAAE,CAAE,CAAC,CAAA;QAC1D,CAAC;IACH,CAAC;AACH,CAAC;AAED,MAAM,UAAU,aAAa,CAC3B,UAAqC,EACrC,aAA4B;IAE5B,OAAO,CAAC,UAAU,IAAI,UAAU,CAAC,SAAS,CAAC,aAAa,CAAC,GAAG,CAAC;QAC3D,CAAC,CAAC,aAAa;QACf,CAAC,CAAC,UAAU,CAAA;AAChB,CAAC;AAED,MAAM,UAAU,cAAc,CAAC,UAAsB;IACnD,MAAM,OAAO,GAAG,IAAI,WAAW,CAAC,OAAO,CAAC,CAAA;IACxC,MAAM,WAAW,GAAa,EAAE,CAAA;IAChC,MAAM,WAAW,GAA2B,EAAE,CAAA;IAC9C,IAAI,SAAS,GAAG,CAAC,CAAA;IACjB,IAAI,GAAG,GAAG,CAAC,CAAA;IACX,OAAO,GAAG,GAAG,UAAU,CAAC,MAAM,EAAE,CAAC;QAC/B,MAAM,GAAG,GAAG,UAAU,CAAC,OAAO,CAAC,CAAC,EAAE,GAAG,CAAC,CAAA;QACtC,IAAI,GAAG,KAAK,CAAC,CAAC,EAAE,CAAC;YACf,MAAK;QACP,CAAC;QACD,IAAI,GAAG,GAAG,GAAG,EAAE,CAAC;YACd,MAAM,OAAO,GAAG,OAAO,CAAC,MAAM,CAAC,UAAU,CAAC,QAAQ,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,CAAA;YAC7D,WAAW,CAAC,SAAS,CAAC,GAAG,OAAO,CAAA;YAChC,WAAW,CAAC,OAAO,CAAC,GAAG,SAAS,CAAA;QAClC,CAAC;QACD,GAAG,GAAG,GAAG,GAAG,CAAC,CAAA;QACb,SAAS,EAAE,CAAA;IACb,CAAC;IACD,OAAO,EAAE,WAAW,EAAE,WAAW,EAAE,CAAA;AACrC,CAAC;AAED,MAAM,YAAY,GAA2B;IAC3C,CAAC,EAAE,SAAS;IACZ,CAAC,EAAE,KAAK;IACR,CAAC,EAAE,KAAK;CACT,CAAA;AAED,MAAM,UAAU,YAAY,CAAC,KAAiB,EAAE,MAAc;IAC5D,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAC3B,KAAK,CAAC,MAAM,EACZ,KAAK,CAAC,UAAU,EAChB,KAAK,CAAC,UAAU,CACjB,CAAA;IACD,MAAM,WAAW,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,EAAE,IAAI,CAAC,CAAA;IACnD,MAAM,cAAc,GAClB,WAAW,GAAG,SAAS,CAAC,CAAC,CAAC,sBAAsB,CAAC,CAAC,CAAC,gBAAgB,CAAA;IACrE,MAAM,MAAM,GAAG,YAAY,CAAC,WAAW,GAAG,GAAG,CAAC,CAAA;IAC9C,IAAI,CAAC,MAAM,EAAE,CAAC;QACZ,MAAM,IAAI,KAAK,CAAC,qCAAqC,WAAW,EAAE,CAAC,CAAA;IACrE,CAAC;IACD,MAAM,aAAa,GAAG;QACpB,GAAG,EAAE,QAAQ,CAAC,QAAQ,CAAC,MAAM,GAAG,CAAC,EAAE,IAAI,CAAC;QACxC,KAAK,EAAE,QAAQ,CAAC,QAAQ,CAAC,MAAM,GAAG,CAAC,EAAE,IAAI,CAAC;QAC1C,GAAG,EAAE,QAAQ,CAAC,QAAQ,CAAC,MAAM,GAAG,EAAE,EAAE,IAAI,CAAC;KAC1C,CAAA;IACD,MAAM,SAAS,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,GAAG,EAAE,EAAE,IAAI,CAAC,CAAA;IACtD,MAAM,QAAQ,GAAG,SAAS,CAAC,CAAC,CAAC,MAAM,CAAC,YAAY,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,SAAS,CAAA;IACvE,MAAM,SAAS,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,GAAG,EAAE,EAAE,IAAI,CAAC,CAAA;IACtD,MAAM,iBAAiB,GAAG,QAAQ,CAAC,QAAQ,CAAC,MAAM,GAAG,EAAE,EAAE,IAAI,CAAC,CAAA;IAC9D,MAAM,EAAE,WAAW,EAAE,WAAW,EAAE,GAAG,cAAc,CACjD,KAAK,CAAC,QAAQ,CAAC,MAAM,GAAG,EAAE,EAAE,MAAM,GAAG,EAAE,GAAG,iBAAiB,CAAC,CAC7D,CAAA;IACD,OAAO;QACL,WAAW;QACX,WAAW;QACX,SAAS;QACT,QAAQ;QACR,aAAa;QACb,MAAM;QACN,cAAc;KACf,CAAA;AACH,CAAC;AAED,MAAM,UAAU,cAAc,CAAC,KAAiB,EAAE,MAAc;IAC9D,OAAO,EAAE,SAAS,EAAE,uBAAuB,CAAC,KAAK,EAAE,MAAM,CAAC,EAAE,CAAA;AAC9D,CAAC;AAED,0DAA0D;AAC1D,MAAM,UAAU,cAAc,CAC5B,UAA4C,EAC5C,OAAO,GAAG,CAAC;IAEX,MAAM,GAAG,GAAG,IAAI,GAAG,CAAY,EAAE,OAAO,EAAE,CAAC,CAAA;IAC3C,OAAO,CAAC,KAAa,EAAE,EAAE;QACvB,MAAM,MAAM,GAAG,GAAG,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;QAC7B,IAAI,MAAM,KAAK,SAAS,EAAE,CAAC;YACzB,OAAO,MAAM,CAAA;QACf,CAAC;QACD,MAAM,MAAM,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;QAChC,IAAI,MAAM,KAAK,SAAS,EAAE,CAAC;YACzB,GAAG,CAAC,GAAG,CAAC,KAAK,EAAE,MAAM,CAAC,CAAA;QACxB,CAAC;QACD,OAAO,MAAM,CAAA;IACf,CAAC,CAAA;AACH,CAAC"}

package/package.json

@@ -1,8 +1,10 @@
 {
   "name": "@gmod/tabix",
-  "version": "3.4.2",
+  "version": "3.5.0",
+  "packageManager": "pnpm@11.15.1",
   "description": "Read Tabix-indexed files, supports both .tbi and .csi indexes",
   "type": "module",
+  "sideEffects": false,
   "main": "dist/index.js",
   "exports": {
     "import": "./esm/index.js",

package/src/csi.ts

@@ -14,7 +14,6 @@ import { fromBytes } from './virtualOffset.ts'
 
 import type { Options, RefIndex } from './indexFile.ts'
 import type VirtualOffset from './virtualOffset.ts'
-import type { GenericFilehandle } from 'generic-filehandle2'
 
 const CSI1_MAGIC = 21_582_659 // CSI\1
 const CSI2_MAGIC = 38_359_875 // CSI\2
@@ -29,19 +28,9 @@ function rshift(num: number, bits: number) {
 }
 
 export default class CSI extends IndexFile {
-  private maxBinNumber: number
-  private depth: number
-  private minShift: number
-  constructor(args: { filehandle: GenericFilehandle }) {
-    super(args)
-    this.maxBinNumber = 0
-    this.depth = 0
-    this.minShift = 0
-  }
-  /** @internal */
-  indexCov() {
-    throw new Error('CSI indexes do not support indexcov')
-  }
+  private maxBinNumber = 0
+  private depth = 0
+  private minShift = 0
 
   /** @internal */
   async _parse(opts: Options = {}) {
@@ -50,7 +39,11 @@ export default class CSI extends IndexFile {
       onProgress: opts.onProgress,
     })
     const bytes = (await unzip(buf)) as Uint8Array
-    const dataView = new DataView(bytes.buffer)
+    const dataView = new DataView(
+      bytes.buffer,
+      bytes.byteOffset,
+      bytes.byteLength,
+    )
 
     const magic = dataView.getUint32(0, true)
     let csiVersion
@@ -114,6 +107,7 @@ export default class CSI extends IndexFile {
       const binCount = dataView.getInt32(pos, true)
       pos += 4
       const binIndex: Record<number, Chunk[]> = {}
+      const loffsets: Record<number, VirtualOffset> = {}
       let stats
       for (let j = 0; j < binCount; j++) {
         const bin = dataView.getUint32(pos, true)
@@ -122,7 +116,8 @@ export default class CSI extends IndexFile {
           stats = parsePseudoBin(bytes, pos + 28)
           pos += 28 + 16
         } else {
-          pos += 8 // skip loffset (tracked in first pass)
+          loffsets[bin] = fromBytes(bytes, pos)
+          pos += 8
           const chunkCount = dataView.getInt32(pos, true)
           pos += 4
           const chunks = Array.from<Chunk>({ length: chunkCount })
@@ -138,7 +133,7 @@ export default class CSI extends IndexFile {
         }
       }
       clampChunkEnds(Object.values(binIndex).flat())
-      return { binIndex, stats }
+      return { binIndex, loffsets, stats }
     }
 
     return {
@@ -191,7 +186,35 @@ export default class CSI extends IndexFile {
       }
     }
 
-    return optimizeChunks(chunks)
+    return optimizeChunks(chunks, this.minOffset(ba.loffsets, min))
+  }
+
+  /**
+   * CSI's equivalent of the BAI/TBI linear index: the loffset of the deepest
+   * indexed bin covering `beg` is the earliest virtual offset any record
+   * overlapping `beg` can have, so chunks ending at or before it are dead.
+   * Walks leaf -> previous sibling -> parent until an indexed bin is found.
+   * SYNC: htslib hts_itr_query min_off computation
+   */
+  private minOffset(
+    loffsets: Record<number, VirtualOffset> | undefined,
+    beg: number,
+  ) {
+    let found: VirtualOffset | undefined
+    if (loffsets) {
+      // first bin of the deepest level, i.e. (8**depth - 1) / 7
+      let bin = (lshift(1, 3 * this.depth) - 1) / 7 + rshift(beg, this.minShift)
+      while (found === undefined && bin > 0) {
+        found = loffsets[bin]
+        if (found === undefined) {
+          const parent = Math.floor((bin - 1) / 8)
+          const firstChild = parent * 8 + 1
+          bin = bin > firstChild ? bin - 1 : parent
+        }
+      }
+      found ??= loffsets[0]
+    }
+    return found
   }
 
   /** @internal */

package/src/indexFile.ts

@@ -16,6 +16,8 @@ export interface RefIndex {
   binIndex: Record<number, Chunk[]>
   stats?: { lineCount: number }
   linearIndex?: VirtualOffset[]
+  /** CSI only: per-bin loffset, the linear index's equivalent for pruning */
+  loffsets?: Record<number, VirtualOffset>
 }
 
 export interface IndexData {

package/src/long.ts

@@ -1,5 +1,4 @@
-export const TWO_PWR_16_DBL = 1 << 16
-export const TWO_PWR_32_DBL = TWO_PWR_16_DBL * TWO_PWR_16_DBL
+const TWO_PWR_32_DBL = 2 ** 32
 
 export function longFromBytesToUnsigned(source: Uint8Array, i = 0) {
   const low =

package/src/tabixIndexedFile.ts

@@ -14,6 +14,7 @@ import type { GenericFilehandle } from 'generic-filehandle2'
 
 const TAB = 9
 const NEWLINE = 10
+const CARRIAGE_RETURN = 13
 const SEMICOLON = 59
 
 type GetLinesCallback = (
@@ -59,6 +60,56 @@ function resolveFilehandle(
   throw new TypeError('must provide either filehandle, path, or url')
 }
 
+// An explicitly supplied index always wins over the `<path>.tbi` /
+// `<url>.tbi` names derived from the data file, whichever kind it is.
+function resolveIndex({
+  tbiFilehandle,
+  csiFilehandle,
+  tbiPath,
+  csiPath,
+  tbiUrl,
+  csiUrl,
+  path,
+  url,
+}: {
+  tbiFilehandle?: GenericFilehandle
+  csiFilehandle?: GenericFilehandle
+  tbiPath?: string
+  csiPath?: string
+  tbiUrl?: string
+  csiUrl?: string
+  path?: string
+  url?: string
+}) {
+  if (tbiFilehandle) {
+    return new TBI({ filehandle: tbiFilehandle })
+  }
+  if (csiFilehandle) {
+    return new CSI({ filehandle: csiFilehandle })
+  }
+  if (tbiPath) {
+    return new TBI({ filehandle: new LocalFile(tbiPath) })
+  }
+  if (csiPath) {
+    return new CSI({ filehandle: new LocalFile(csiPath) })
+  }
+  if (csiUrl) {
+    return new CSI({ filehandle: new RemoteFile(csiUrl) })
+  }
+  if (tbiUrl) {
+    return new TBI({ filehandle: new RemoteFile(tbiUrl) })
+  }
+  if (path) {
+    return new TBI({ filehandle: new LocalFile(`${path}.tbi`) })
+  }
+  if (url) {
+    return new TBI({ filehandle: new RemoteFile(`${url}.tbi`) })
+  }
+  throw new TypeError(
+    'must provide one of tbiFilehandle, tbiPath, csiFilehandle, csiPath, tbiUrl, csiUrl',
+  )
+}
+
 function calculateFileOffset(
   cpositions: number[],
   dpositions: number[],
@@ -172,28 +223,16 @@ export default class TabixIndexedFile {
     chunkCacheSize?: number
   }) {
     this.filehandle = resolveFilehandle(filehandle, path, url)
-
-    if (tbiFilehandle) {
-      this.index = new TBI({ filehandle: tbiFilehandle })
-    } else if (csiFilehandle) {
-      this.index = new CSI({ filehandle: csiFilehandle })
-    } else if (tbiPath) {
-      this.index = new TBI({ filehandle: new LocalFile(tbiPath) })
-    } else if (csiPath) {
-      this.index = new CSI({ filehandle: new LocalFile(csiPath) })
-    } else if (path) {
-      this.index = new TBI({ filehandle: new LocalFile(`${path}.tbi`) })
-    } else if (csiUrl) {
-      this.index = new CSI({ filehandle: new RemoteFile(csiUrl) })
-    } else if (tbiUrl) {
-      this.index = new TBI({ filehandle: new RemoteFile(tbiUrl) })
-    } else if (url) {
-      this.index = new TBI({ filehandle: new RemoteFile(`${url}.tbi`) })
-    } else {
-      throw new TypeError(
-        'must provide one of tbiFilehandle, tbiPath, csiFilehandle, csiPath, tbiUrl, csiUrl',
-      )
-    }
+    this.index = resolveIndex({
+      tbiFilehandle,
+      csiFilehandle,
+      tbiPath,
+      csiPath,
+      tbiUrl,
+      csiUrl,
+      path,
+      url,
+    })
 
     this.chunkCache = new AbortablePromiseCache<Chunk, ReadChunk>({
       cache: new LRU({ maxSize: Math.floor(chunkCacheSize / (1 << 16)) }),
@@ -318,15 +357,14 @@ export default class TabixIndexedFile {
           continue
         }
 
-        // find tab positions
+        // find tab positions. Columns past the end of the line all get `n`
+        // rather than breaking out, which would leave stale offsets from the
+        // previous line in the tail of the array.
         tabs[0] = blockStart - 1
         for (let i = 0; i < maxColumn; i++) {
-          const tabPos = buffer.indexOf(TAB, tabs[i]! + 1)
-          if (tabPos === -1 || tabPos >= n) {
-            tabs[i + 1] = n
-            break
-          }
-          tabs[i + 1] = tabPos
+          const prev = tabs[i]!
+          const tabPos = prev < n ? buffer.indexOf(TAB, prev + 1) : -1
+          tabs[i + 1] = tabPos === -1 || tabPos >= n ? n : tabPos
         }
 
         // compare ref name bytes directly
@@ -380,7 +418,9 @@ export default class TabixIndexedFile {
         }
 
         if (endCoordinate > start) {
-          const line = decoder.decode(buffer.subarray(blockStart, n))
+          // trim a CRLF terminator, matching htslib's line reader
+          const lineEnd = buffer[n - 1] === CARRIAGE_RETURN ? n - 1 : n
+          const line = decoder.decode(buffer.subarray(blockStart, lineEnd))
           callback(
             line,
             calculateFileOffset(