@gmod/tabix 3.0.2 → 3.0.3

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Files changed (4) hide show
  1. package/CHANGELOG.md +4 -0
  2. package/dist/package.json +1 -0
  3. package/dist/tabix-bundle.js +1 -1
  4. package/package.json +2 -1
package/CHANGELOG.md CHANGED
@@ -1,3 +1,7 @@
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+ ## [3.0.3](https://github.com/GMOD/tabix-js/compare/v3.0.2...v3.0.3) (2025-05-13)
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  ## [3.0.2](https://github.com/GMOD/tabix-js/compare/v3.0.1...v3.0.2) (2025-04-30)
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package/dist/package.json ADDED
@@ -0,0 +1 @@
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+ {"type": "commonjs"}
package/dist/tabix-bundle.js CHANGED
@@ -1 +1 @@
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n,i,a=e.max_chain_length,r=e.strstart,s=e.prev_length,o=e.nice_match,l=e.strstart>e.w_size-c?e.strstart-(e.w_size-c):0,h=e.window,f=e.w_mask,u=e.prev,_=e.strstart+d,g=h[r+s-1],b=h[r+s];e.prev_length>=e.good_match&&(a>>=2),o>e.lookahead&&(o=e.lookahead);do{if(h[(n=t)+s]===b&&h[n+s-1]===g&&h[n]===h[r]&&h[++n]===h[r+1]){r+=2,n++;do{}while(h[++r]===h[++n]&&h[++r]===h[++n]&&h[++r]===h[++n]&&h[++r]===h[++n]&&h[++r]===h[++n]&&h[++r]===h[++n]&&h[++r]===h[++n]&&h[++r]===h[++n]&&r<_);if(i=d-(_-r),r=_-d,i>s){if(e.match_start=t,s=i,i>=o)break;g=h[r+s-1],b=h[r+s]}}}while((t=u[t&f])>l&&0!==--a);return s<=e.lookahead?s:e.lookahead}function x(e){var 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e.insert=e.strstart<2?e.strstart:2,4===t?(w(e,!0),0===e.strm.avail_out?3:4):e.last_lit&&(w(e,!1),0===e.strm.avail_out)?1:2}function B(e,t){for(var n,i,a;;){if(e.lookahead<c){if(x(e),e.lookahead<c&&0===t)return 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if(e.match_available){if((i=r._tr_tally(e,0,e.window[e.strstart-1]))&&w(e,!1),e.strstart++,e.lookahead--,0===e.strm.avail_out)return 1}else e.match_available=1,e.strstart++,e.lookahead--}return e.match_available&&(i=r._tr_tally(e,0,e.window[e.strstart-1]),e.match_available=0),e.insert=e.strstart<2?e.strstart:2,4===t?(w(e,!0),0===e.strm.avail_out?3:4):e.last_lit&&(w(e,!1),0===e.strm.avail_out)?1:2}function S(e,t,n,i,a){this.good_length=e,this.max_lazy=t,this.nice_length=n,this.max_chain=i,this.func=a}function P(){this.strm=null,this.status=0,this.pending_buf=null,this.pending_buf_size=0,this.pending_out=0,this.pending=0,this.wrap=0,this.gzhead=null,this.gzindex=0,this.method=8,this.last_flush=-1,this.w_size=0,this.w_bits=0,this.w_mask=0,this.window=null,this.window_size=0,this.prev=null,this.head=null,this.ins_h=0,this.hash_size=0,this.hash_bits=0,this.hash_mask=0,this.hash_shift=0,this.block_start=0,this.match_length=0,this.prev_match=0,this.match_available=0,this.strstart=0,this.match_start=0,this.lookahead=0,this.prev_length=0,this.max_chain_length=0,this.max_lazy_match=0,this.level=0,this.strategy=0,this.good_match=0,this.nice_match=0,this.dyn_ltree=new a.Buf16(1146),this.dyn_dtree=new a.Buf16(122),this.bl_tree=new a.Buf16(78),m(this.dyn_ltree),m(this.dyn_dtree),m(this.bl_tree),this.l_desc=null,this.d_desc=null,this.bl_desc=null,this.bl_count=new a.Buf16(16),this.heap=new a.Buf16(573),m(this.heap),this.heap_len=0,this.heap_max=0,this.depth=new a.Buf16(573),m(this.depth),this.l_buf=0,this.lit_bufsize=0,this.last_lit=0,this.d_buf=0,this.opt_len=0,this.static_len=0,this.matches=0,this.insert=0,this.bi_buf=0,this.bi_valid=0}function O(e){var t;return e&&e.state?(e.total_in=e.total_out=0,e.data_type=2,(t=e.state).pending=0,t.pending_out=0,t.wrap<0&&(t.wrap=-t.wrap),t.status=t.wrap?42:u,e.adler=2===t.wrap?0:1,t.last_flush=0,r._tr_init(t),0):g(e,h)}function T(e){var t,n=O(e);return 0===n&&((t=e.state).window_size=2*t.w_size,m(t.head),t.max_lazy_match=i[t.level].max_lazy,t.good_match=i[t.level].good_length,t.nice_match=i[t.level].nice_length,t.max_chain_length=i[t.level].max_chain,t.strstart=0,t.block_start=0,t.lookahead=0,t.insert=0,t.match_length=t.prev_length=2,t.match_available=0,t.ins_h=0),n}function I(e,t,n,i,r,s){if(!e)return h;var o=1;if(-1===t&&(t=6),i<0?(o=0,i=-i):i>15&&(o=2,i-=16),r<1||r>9||8!==n||i<8||i>15||t<0||t>9||s<0||s>4)return g(e,h);8===i&&(i=9);var l=new P;return e.state=l,l.strm=e,l.wrap=o,l.gzhead=null,l.w_bits=i,l.w_size=1<<l.w_bits,l.w_mask=l.w_size-1,l.hash_bits=r+7,l.hash_size=1<<l.hash_bits,l.hash_mask=l.hash_size-1,l.hash_shift=~~((l.hash_bits+3-1)/3),l.window=new a.Buf8(2*l.w_size),l.head=new a.Buf16(l.hash_size),l.prev=new a.Buf16(l.w_size),l.lit_bufsize=1<<r+6,l.pending_buf_size=4*l.lit_bufsize,l.pending_buf=new a.Buf8(l.pending_buf_size),l.d_buf=1*l.lit_bufsize,l.l_buf=3*l.lit_bufsize,l.level=t,l.strategy=s,l.method=n,T(e)}i=[new S(0,0,0,0,(function(e,t){var n=65535;for(n>e.pending_buf_size-5&&(n=e.pending_buf_size-5);;){if(e.lookahead<=1){if(x(e),0===e.lookahead&&0===t)return 1;if(0===e.lookahead)break}e.strstart+=e.lookahead,e.lookahead=0;var i=e.block_start+n;if((0===e.strstart||e.strstart>=i)&&(e.lookahead=e.strstart-i,e.strstart=i,w(e,!1),0===e.strm.avail_out))return 1;if(e.strstart-e.block_start>=e.w_size-c&&(w(e,!1),0===e.strm.avail_out))return 1}return e.insert=0,4===t?(w(e,!0),0===e.strm.avail_out?3:4):(e.strstart>e.block_start&&(w(e,!1),e.strm.avail_out),1)})),new S(4,4,8,4,z),new S(4,5,16,8,z),new S(4,6,32,32,z),new S(4,4,16,16,B),new S(8,16,32,32,B),new S(8,16,128,128,B),new S(8,32,128,256,B),new S(32,128,258,1024,B),new S(32,258,258,4096,B)],t.deflateInit=function(e,t){return I(e,t,8,15,8,0)},t.deflateInit2=I,t.deflateReset=T,t.deflateResetKeep=O,t.deflateSetHeader=function(e,t){return e&&e.state?2!==e.state.wrap?h:(e.state.gzhead=t,0):h},t.deflate=function(e,t){var n,a,s,l;if(!e||!e.state||t>5||t<0)return e?g(e,h):h;if(a=e.state,!e.output||!e.input&&0!==e.avail_in||a.status===_&&4!==t)return g(e,0===e.avail_out?-5:h);if(a.strm=e,n=a.last_flush,a.last_flush=t,42===a.status)if(2===a.wrap)e.adler=0,v(a,31),v(a,139),v(a,8),a.gzhead?(v(a,(a.gzhead.text?1:0)+(a.gzhead.hcrc?2:0)+(a.gzhead.extra?4:0)+(a.gzhead.name?8:0)+(a.gzhead.comment?16:0)),v(a,255&a.gzhead.time),v(a,a.gzhead.time>>8&255),v(a,a.gzhead.time>>16&255),v(a,a.gzhead.time>>24&255),v(a,9===a.level?2:a.strategy>=2||a.level<2?4:0),v(a,255&a.gzhead.os),a.gzhead.extra&&a.gzhead.extra.length&&(v(a,255&a.gzhead.extra.length),v(a,a.gzhead.extra.length>>8&255)),a.gzhead.hcrc&&(e.adler=o(e.adler,a.pending_buf,a.pending,0)),a.gzindex=0,a.status=69):(v(a,0),v(a,0),v(a,0),v(a,0),v(a,0),v(a,9===a.level?2:a.strategy>=2||a.level<2?4:0),v(a,3),a.status=u);else{var c=8+(a.w_bits-8<<4)<<8;c|=(a.strategy>=2||a.level<2?0:a.level<6?1:6===a.level?2:3)<<6,0!==a.strstart&&(c|=32),c+=31-c%31,a.status=u,y(a,c),0!==a.strstart&&(y(a,e.adler>>>16),y(a,65535&e.adler)),e.adler=1}if(69===a.status)if(a.gzhead.extra){for(s=a.pending;a.gzindex<(65535&a.gzhead.extra.length)&&(a.pending!==a.pending_buf_size||(a.gzhead.hcrc&&a.pending>s&&(e.adler=o(e.adler,a.pending_buf,a.pending-s,s)),p(e),s=a.pending,a.pending!==a.pending_buf_size));)v(a,255&a.gzhead.extra[a.gzindex]),a.gzindex++;a.gzhead.hcrc&&a.pending>s&&(e.adler=o(e.adler,a.pending_buf,a.pending-s,s)),a.gzindex===a.gzhead.extra.length&&(a.gzindex=0,a.status=73)}else a.status=73;if(73===a.status)if(a.gzhead.name){s=a.pending;do{if(a.pending===a.pending_buf_size&&(a.gzhead.hcrc&&a.pending>s&&(e.adler=o(e.adler,a.pending_buf,a.pending-s,s)),p(e),s=a.pending,a.pending===a.pending_buf_size)){l=1;break}l=a.gzindex<a.gzhead.name.length?255&a.gzhead.name.charCodeAt(a.gzindex++):0,v(a,l)}while(0!==l);a.gzhead.hcrc&&a.pending>s&&(e.adler=o(e.adler,a.pending_buf,a.pending-s,s)),0===l&&(a.gzindex=0,a.status=91)}else a.status=91;if(91===a.status)if(a.gzhead.comment){s=a.pending;do{if(a.pending===a.pending_buf_size&&(a.gzhead.hcrc&&a.pending>s&&(e.adler=o(e.adler,a.pending_buf,a.pending-s,s)),p(e),s=a.pending,a.pending===a.pending_buf_size)){l=1;break}l=a.gzindex<a.gzhead.comment.length?255&a.gzhead.comment.charCodeAt(a.gzindex++):0,v(a,l)}while(0!==l);a.gzhead.hcrc&&a.pending>s&&(e.adler=o(e.adler,a.pending_buf,a.pending-s,s)),0===l&&(a.status=f)}else 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f(){this.mode=0,this.last=!1,this.wrap=0,this.havedict=!1,this.flags=0,this.dmax=0,this.check=0,this.total=0,this.head=null,this.wbits=0,this.wsize=0,this.whave=0,this.wnext=0,this.window=null,this.hold=0,this.bits=0,this.length=0,this.offset=0,this.extra=0,this.lencode=null,this.distcode=null,this.lenbits=0,this.distbits=0,this.ncode=0,this.nlen=0,this.ndist=0,this.have=0,this.next=null,this.lens=new i.Buf16(320),this.work=new i.Buf16(288),this.lendyn=null,this.distdyn=null,this.sane=0,this.back=0,this.was=0}function u(e){var t;return e&&e.state?(t=e.state,e.total_in=e.total_out=t.total=0,e.msg="",t.wrap&&(e.adler=1&t.wrap),t.mode=1,t.last=0,t.havedict=0,t.dmax=32768,t.head=null,t.hold=0,t.bits=0,t.lencode=t.lendyn=new i.Buf32(852),t.distcode=t.distdyn=new i.Buf32(592),t.sane=1,t.back=-1,0):l}function _(e){var t;return e&&e.state?((t=e.state).wsize=0,t.whave=0,t.wnext=0,u(e)):l}function g(e,t){var n,i;return 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e;z=0;do{A=f[_+z++],n.head&&A&&n.length<65536&&(n.head.name+=String.fromCharCode(A))}while(A&&z<b);if(512&n.flags&&(n.check=r(n.check,f,z,_)),b-=z,_+=z,A)break e}else n.head&&(n.head.name=null);n.length=0,n.mode=8;case 8:if(4096&n.flags){if(0===b)break e;z=0;do{A=f[_+z++],n.head&&A&&n.length<65536&&(n.head.comment+=String.fromCharCode(A))}while(A&&z<b);if(512&n.flags&&(n.check=r(n.check,f,z,_)),b-=z,_+=z,A)break e}else n.head&&(n.head.comment=null);n.mode=9;case 9:if(512&n.flags){for(;w<16;){if(0===b)break e;b--,p+=f[_++]<<w,w+=8}if(p!==(65535&n.check)){e.msg="header crc mismatch",n.mode=d;break}p=0,w=0}n.head&&(n.head.hcrc=n.flags>>9&1,n.head.done=!0),e.adler=n.check=0,n.mode=h;break;case 10:for(;w<32;){if(0===b)break e;b--,p+=f[_++]<<w,w+=8}e.adler=n.check=c(p),p=0,w=0,n.mode=11;case 11:if(0===n.havedict)return e.next_out=g,e.avail_out=m,e.next_in=_,e.avail_in=b,n.hold=p,n.bits=w,2;e.adler=n.check=1,n.mode=h;case h:if(5===t||6===t)break e;case 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e;b--,p+=f[_++]<<w,w+=8}n.lens[j[n.have++]]=7&p,p>>>=3,w-=3}for(;n.have<19;)n.lens[j[n.have++]]=0;if(n.lencode=n.lendyn,n.lenbits=7,F={bits:n.lenbits},R=o(0,n.lens,0,19,n.lencode,0,n.work,F),n.lenbits=F.bits,R){e.msg="invalid code lengths set",n.mode=d;break}n.have=0,n.mode=19;case 19:for(;n.have<n.nlen+n.ndist;){for(;O=(N=n.lencode[p&(1<<n.lenbits)-1])>>>16&255,T=65535&N,!((P=N>>>24)<=w);){if(0===b)break e;b--,p+=f[_++]<<w,w+=8}if(T<16)p>>>=P,w-=P,n.lens[n.have++]=T;else{if(16===T){for(D=P+2;w<D;){if(0===b)break e;b--,p+=f[_++]<<w,w+=8}if(p>>>=P,w-=P,0===n.have){e.msg="invalid bit length repeat",n.mode=d;break}A=n.lens[n.have-1],z=3+(3&p),p>>>=2,w-=2}else if(17===T){for(D=P+3;w<D;){if(0===b)break e;b--,p+=f[_++]<<w,w+=8}w-=P,A=0,z=3+(7&(p>>>=P)),p>>>=3,w-=3}else{for(D=P+7;w<D;){if(0===b)break e;b--,p+=f[_++]<<w,w+=8}w-=P,A=0,z=11+(127&(p>>>=P)),p>>>=7,w-=7}if(n.have+z>n.nlen+n.ndist){e.msg="invalid bit length 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if((r=s[a])>4)h[i++]=65533,n+=r-1;else{for(a&=2===r?31:3===r?15:7;r>1&&n<o;)a=a<<6|63&e[n++],r--;r>1?h[i++]=65533:a<65536?h[i++]=a:(a-=65536,h[i++]=55296|a>>10&1023,h[i++]=56320|1023&a)}return l(h,i)},t.utf8border=function(e,t){var n;for((t=t||e.length)>e.length&&(t=e.length),n=t-1;n>=0&&128==(192&e[n]);)n--;return n<0||0===n?t:n+s[e[n]]>t?n:t}},998:(e,t,n)=>{"use strict";var i=n(805),a=[3,4,5,6,7,8,9,10,11,13,15,17,19,23,27,31,35,43,51,59,67,83,99,115,131,163,195,227,258,0,0],r=[16,16,16,16,16,16,16,16,17,17,17,17,18,18,18,18,19,19,19,19,20,20,20,20,21,21,21,21,16,72,78],s=[1,2,3,4,5,7,9,13,17,25,33,49,65,97,129,193,257,385,513,769,1025,1537,2049,3073,4097,6145,8193,12289,16385,24577,0,0],o=[16,16,16,16,17,17,18,18,19,19,20,20,21,21,22,22,23,23,24,24,25,25,26,26,27,27,28,28,29,29,64,64];e.exports=function(e,t,n,l,h,d,c,f){var u,_,g,b,m,p,w,v,y,k=f.bits,x=0,z=0,B=0,S=0,P=0,O=0,T=0,I=0,E=0,C=0,A=null,R=0,F=new i.Buf16(16),D=new i.Buf16(16),N=null,M=0;for(x=0;x<=15;x++)F[x]=0;for(z=0;z<l;z++)F[t[n+z]]++;for(P=k,S=15;S>=1&&0===F[S];S--);if(P>S&&(P=S),0===S)return h[d++]=20971520,h[d++]=20971520,f.bits=1,0;for(B=1;B<S&&0===F[B];B++);for(P<B&&(P=B),I=1,x=1;x<=15;x++)if(I<<=1,(I-=F[x])<0)return-1;if(I>0&&(0===e||1!==S))return-1;for(D[1]=0,x=1;x<15;x++)D[x+1]=D[x]+F[x];for(z=0;z<l;z++)0!==t[n+z]&&(c[D[t[n+z]]++]=z);if(0===e?(A=N=c,p=19):1===e?(A=a,R-=257,N=r,M-=257,p=256):(A=s,N=o,p=-1),C=0,z=0,x=B,m=d,O=P,T=0,g=-1,b=(E=1<<P)-1,1===e&&E>852||2===e&&E>592)return 1;for(;;){w=x-T,c[z]<p?(v=0,y=c[z]):c[z]>p?(v=N[M+c[z]],y=A[R+c[z]]):(v=96,y=0),u=1<<x-T,B=_=1<<O;do{h[m+(C>>T)+(_-=u)]=w<<24|v<<16|y}while(0!==_);for(u=1<<x-1;C&u;)u>>=1;if(0!==u?(C&=u-1,C+=u):C=0,z++,0===--F[x]){if(x===S)break;x=t[n+c[z]]}if(x>P&&(C&b)!==g){for(0===T&&(T=P),m+=B,I=1<<(O=x-T);O+T<S&&!((I-=F[O+T])<=0);)O++,I<<=1;if(E+=1<<O,1===e&&E>852||2===e&&E>592)return 1;h[g=C&b]=P<<24|O<<16|m-d}}return 0!==C&&(h[m+C]=x-T<<24|64<<16),f.bits=P,0}}},t={};function n(i){var a=t[i];if(void 0!==a)return a.exports;var r=t[i]={exports:{}};return e[i].call(r.exports,r,r.exports,n),r.exports}n.r=e=>{"undefined"!=typeof Symbol&&Symbol.toStringTag&&Object.defineProperty(e,Symbol.toStringTag,{value:"Module"}),Object.defineProperty(e,"__esModule",{value:!0})};var i=n(159);window.gmodTABIX=i})();
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@gmod/tabix",
3
- "version": "3.0.2",
3
+ "version": "3.0.3",
4
4
  "description": "Read Tabix-indexed files, supports both .tbi and .csi indexes",
5
5
  "type": "module",
6
6
  "types": "./dist/index.d.ts",
@@ -38,6 +38,7 @@
38
38
  "prebuild": "npm run clean && npm run lint",
39
39
  "build:esm": "tsc --target es2020 --outDir esm",
40
40
  "build:es5": "tsc --target es2020 --module commonjs --outDir dist",
41
+ "postbuild:es5": "echo '{\"type\": \"commonjs\"}' > dist/package.json",
41
42
  "build": "npm run build:esm && npm run build:es5",
42
43
  "postbuild": "webpack",
43
44
  "preversion": "npm run lint && npm test run && npm run build",