@gmod/tabix 1.5.2 → 1.5.3

package/CHANGELOG.md

@@ -1,3 +1,9 @@
+## [1.5.3](https://github.com/GMOD/tabix-js/compare/v1.5.2...v1.5.3) (2022-04-25)
+
+
+
+- Fix esm module build to use ESM instead of CJS
+
 <a name="1.5.2"></a>
 ## [1.5.2](https://github.com/GMOD/tabix-js/compare/v1.5.1...v1.5.2) (2021-12-15)
 

package/dist/chunk.js

@@ -35,3 +35,4 @@ var Chunk = /** @class */ (function () {
     return Chunk;
 }());
 exports.default = Chunk;
+//# sourceMappingURL=chunk.js.map

package/dist/chunk.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"chunk.js","sourceRoot":"","sources":["../src/chunk.ts"],"names":[],"mappings":";;AAEA,iDAAiD;AACjD;IAME;;;;;OAKG;IACH,eACE,IAAmB,EACnB,IAAmB,EACnB,GAAW,EACX,WAAuB;QAAvB,4BAAA,EAAA,uBAAuB;QAEvB,IAAI,CAAC,IAAI,GAAG,IAAI,CAAA;QAChB,IAAI,CAAC,IAAI,GAAG,IAAI,CAAA;QAChB,IAAI,CAAC,GAAG,GAAG,GAAG,CAAA;QACd,IAAI,CAAC,YAAY,GAAG,WAAW,CAAA;IACjC,CAAC;IAED,8BAAc,GAAd;QACE,OAAO,UAAG,IAAI,CAAC,IAAI,eAAK,IAAI,CAAC,IAAI,mBAC/B,IAAI,CAAC,GAAG,2BACO,IAAI,CAAC,WAAW,EAAE,MAAG,CAAA;IACxC,CAAC;IAED,wBAAQ,GAAR;QACE,OAAO,IAAI,CAAC,cAAc,EAAE,CAAA;IAC9B,CAAC;IAED,yBAAS,GAAT,UAAU,CAAQ;QAChB,OAAO,CACL,IAAI,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC;YAC3B,IAAI,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC;YAC3B,IAAI,CAAC,GAAG,GAAG,CAAC,CAAC,GAAG,CACjB,CAAA;IACH,CAAC;IAED,2BAAW,GAAX;QACE,IAAI,IAAI,CAAC,YAAY,KAAK,SAAS,EAAE;YACnC,OAAO,IAAI,CAAC,YAAY,CAAA;SACzB;QACD,OAAO,IAAI,CAAC,IAAI,CAAC,aAAa,GAAG,CAAC,CAAC,IAAI,EAAE,CAAC,GAAG,IAAI,CAAC,IAAI,CAAC,aAAa,CAAA;IACtE,CAAC;IACH,YAAC;AAAD,CAAC,AAhDD,IAgDC"}

package/dist/csi.js

@@ -27,7 +27,11 @@ var __assign = (this && this.__assign) || function () {
 };
 var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
     if (k2 === undefined) k2 = k;
-    Object.defineProperty(o, k2, { enumerable: true, get: function() { return m[k]; } });
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
 }) : (function(o, m, k, k2) {
     if (k2 === undefined) k2 = k;
     o[k2] = m[k];
@@ -343,3 +347,4 @@ var CSI = /** @class */ (function (_super) {
     return CSI;
 }(indexFile_1.default));
 exports.default = CSI;
+//# sourceMappingURL=csi.js.map

package/dist/csi.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"csi.js","sourceRoot":"","sources":["../src/csi.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,8CAAuB;AACvB,yDAA6C;AAE7C,+DAA0D;AAC1D,kDAA2B;AAC3B,+BAAqD;AAErD,0DAAgD;AAEhD,IAAM,UAAU,GAAG,QAAQ,CAAA,CAAC,QAAQ;AACpC,IAAM,UAAU,GAAG,QAAQ,CAAA,CAAC,QAAQ;AAEpC,SAAS,MAAM,CAAC,GAAW,EAAE,IAAY;IACvC,OAAO,GAAG,GAAG,SAAA,CAAC,EAAI,IAAI,CAAA,CAAA;AACxB,CAAC;AACD,SAAS,MAAM,CAAC,GAAW,EAAE,IAAY;IACvC,OAAO,IAAI,CAAC,KAAK,CAAC,GAAG,GAAG,SAAA,CAAC,EAAI,IAAI,CAAA,CAAC,CAAA;AACpC,CAAC;AAED;IAAiC,uBAAS;IAIxC,aAAY,IAAS;QAArB,YACE,kBAAM,IAAI,CAAC,SAIZ;QAHC,KAAI,CAAC,YAAY,GAAG,CAAC,CAAA;QACrB,KAAI,CAAC,KAAK,GAAG,CAAC,CAAA;QACd,KAAI,CAAC,QAAQ,GAAG,CAAC,CAAA;;IACnB,CAAC;IACK,uBAAS,GAAf,UAAgB,OAAe,EAAE,IAAkB;QAAlB,qBAAA,EAAA,SAAkB;;;;;4BAC/B,qBAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,EAAA;;wBAAlC,SAAS,GAAG,SAAsB;wBACxC,IAAI,CAAC,SAAS,EAAE;4BACd,sBAAO,CAAC,CAAC,EAAA;yBACV;wBACK,KAAK,GAAG,SAAS,CAAC,WAAW,CAAC,OAAO,CAAC,CAAA;wBACtC,GAAG,GAAG,SAAS,CAAC,OAAO,CAAC,KAAK,CAAC,CAAA;wBACpC,IAAI,CAAC,GAAG,EAAE;4BACR,sBAAO,CAAC,CAAC,EAAA;yBACV;wBACO,KAAK,GAAK,SAAS,CAAC,OAAO,CAAC,KAAK,CAAC,MAA7B,CAA6B;wBAC1C,IAAI,KAAK,EAAE;4BACT,sBAAO,KAAK,CAAC,SAAS,EAAA;yBACvB;wBACD,sBAAO,CAAC,CAAC,EAAA;;;;KACV;IACK,sBAAQ,GAAd;;;gBACE,MAAM,IAAI,KAAK,CAAC,qCAAqC,CAAC,CAAA;;;KAEvD;IAED,0BAAY,GAAZ,UAAa,KAAa,EAAE,MAAc,EAAE,SAAiB;QAC3D,IAAI,SAAS,GAAG,EAAE,EAAE;YAClB,OAAO;gBACL,WAAW,EAAE,EAAE;gBACf,WAAW,EAAE,EAAE;aAChB,CAAA;SACF;QAED,IAAM,WAAW,GAAG,KAAK,CAAC,WAAW,CAAC,MAAM,CAAC,CAAA;QAC7C,IAAM,cAAc,GAClB,WAAW,GAAG,OAAO,CAAC,CAAC,CAAC,sBAAsB,CAAC,CAAC,CAAC,gBAAgB,CAAA;QACnE,IAAM,MAAM,GACV,EAAE,CAAC,EAAE,SAAS,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,KAAK,EAGnC,CAAC,WAAW,GAAG,GAAG,CAAC,CAAA;QACpB,IAAI,CAAC,MAAM,EAAE;YACX,MAAM,IAAI,KAAK,CAAC,4CAAqC,WAAW,CAAE,CAAC,CAAA;SACpE;QACD,IAAM,aAAa,GAAG;YACpB,GAAG,EAAE,KAAK,CAAC,WAAW,CAAC,MAAM,GAAG,CAAC,CAAC;YAClC,KAAK,EAAE,KAAK,CAAC,WAAW,CAAC,MAAM,GAAG,CAAC,CAAC;YACpC,GAAG,EAAE,KAAK,CAAC,WAAW,CAAC,MAAM,GAAG,EAAE,CAAC;SACpC,CAAA;QACD,IAAM,SAAS,GAAG,KAAK,CAAC,WAAW,CAAC,MAAM,GAAG,EAAE,CAAC,CAAA;QAChD,IAAM,QAAQ,GAAG,SAAS,CAAC,CAAC,CAAC,MAAM,CAAC,YAAY,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,EAAE,CAAA;QAChE,IAAM,SAAS,GAAG,KAAK,CAAC,WAAW,CAAC,MAAM,GAAG,EAAE,CAAC,CAAA;QAChD,IAAM,iBAAiB,GAAG,KAAK,CAAC,WAAW,CAAC,MAAM,GAAG,EAAE,CAAC,CAAA;QAElD,IAAA,KAA+B,IAAI,CAAC,eAAe,CACvD,KAAK,CAAC,KAAK,CAAC,MAAM,GAAG,EAAE,EAAE,MAAM,GAAG,EAAE,GAAG,iBAAiB,CAAC,CAC1D,EAFO,WAAW,iBAAA,EAAE,WAAW,iBAE/B,CAAA;QAED,OAAO;YACL,WAAW,aAAA;YACX,WAAW,aAAA;YACX,SAAS,WAAA;YACT,QAAQ,UAAA;YACR,aAAa,eAAA;YACb,MAAM,QAAA;YACN,cAAc,gBAAA;SACf,CAAA;IACH,CAAC;IAED,6BAAe,GAAf,UAAgB,UAAkB;QAChC,IAAI,SAAS,GAAG,CAAC,CAAA;QACjB,IAAI,aAAa,GAAG,CAAC,CAAA;QACrB,IAAM,WAAW,GAAG,EAAE,CAAA;QACtB,IAAM,WAAW,GAA8B,EAAE,CAAA;QACjD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,CAAC,MAAM,EAAE,CAAC,IAAI,CAAC,EAAE;YAC7C,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,EAAE;gBAClB,IAAI,aAAa,GAAG,CAAC,EAAE;oBACrB,IAAI,OAAO,GAAG,UAAU,CAAC,QAAQ,CAAC,MAAM,EAAE,aAAa,EAAE,CAAC,CAAC,CAAA;oBAC3D,OAAO,GAAG,IAAI,CAAC,YAAY,CAAC,OAAO,CAAC,CAAA;oBACpC,WAAW,CAAC,SAAS,CAAC,GAAG,OAAO,CAAA;oBAChC,WAAW,CAAC,OAAO,CAAC,GAAG,SAAS,CAAA;iBACjC;gBACD,aAAa,GAAG,CAAC,GAAG,CAAC,CAAA;gBACrB,SAAS,IAAI,CAAC,CAAA;aACf;SACF;QACD,OAAO,EAAE,WAAW,aAAA,EAAE,WAAW,aAAA,EAAE,CAAA;IACrC,CAAC;IAED,4BAA4B;IAEtB,oBAAM,GAAZ,UAAa,IAAkB;QAAlB,qBAAA,EAAA,SAAkB;;;;;;;wBACT,KAAA,uBAAK,CAAA;wBAAE,qBAAM,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,IAAI,CAAC,EAAA;4BAAjD,qBAAM,kBAAM,CAAC,SAAoC,CAAW,EAAC;wBAE3E,0BAA0B;sBAFiD;;wBAArE,KAAK,GAAG,SAA6D;wBAI3E,IAAI,KAAK,CAAC,YAAY,CAAC,CAAC,CAAC,KAAK,UAAU,EAAE;4BACxC,UAAU,GAAG,CAAC,CAAA;yBACf;6BAAM,IAAI,KAAK,CAAC,YAAY,CAAC,CAAC,CAAC,KAAK,UAAU,EAAE;4BAC/C,UAAU,GAAG,CAAC,CAAA;yBACf;6BAAM;4BACL,MAAM,IAAI,KAAK,CAAC,gBAAgB,CAAC,CAAA;4BACjC,oDAAoD;yBACrD;wBAED,IAAI,CAAC,QAAQ,GAAG,KAAK,CAAC,WAAW,CAAC,CAAC,CAAC,CAAA;wBACpC,IAAI,CAAC,KAAK,GAAG,KAAK,CAAC,WAAW,CAAC,CAAC,CAAC,CAAA;wBACjC,IAAI,CAAC,YAAY,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,IAAI,CAAC,KAAK,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAA;wBACrD,YAAY,GAAG,SAAA,CAAC,EAAI,CAAC,IAAI,CAAC,QAAQ,GAAG,IAAI,CAAC,KAAK,GAAG,CAAC,CAAC,CAAA,CAAA;wBAEpD,SAAS,GAAG,KAAK,CAAC,WAAW,CAAC,EAAE,CAAC,CAAA;wBACnC,GAAG,GAGH;4BACF,WAAW,EAAE,EAAE;4BACf,WAAW,EAAE,EAAE;yBAChB,CAAA;wBACD,IAAI,SAAS,EAAE;4BACb,GAAG,GAAG,IAAI,CAAC,YAAY,CAAC,KAAK,EAAE,EAAE,EAAE,SAAS,CAAC,CAAA;yBAC9C;wBACK,QAAQ,GAAG,KAAK,CAAC,WAAW,CAAC,EAAE,GAAG,SAAS,CAAC,CAAA;wBAI9C,UAAU,GAAG,EAAE,GAAG,SAAS,GAAG,CAAC,CAAA;wBAC7B,OAAO,GAAG,IAAI,KAAK,CAAC,QAAQ,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC;4BAC9C,oBAAoB;4BACpB,IAAM,QAAQ,GAAG,KAAK,CAAC,WAAW,CAAC,UAAU,CAAC,CAAA;4BAC9C,UAAU,IAAI,CAAC,CAAA;4BACf,IAAM,QAAQ,GAA+B,EAAE,CAAA;4BAC/C,IAAI,KAAK,CAAA,CAAC,iDAAiD;4BAC3D,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,EAAE,CAAC,IAAI,CAAC,EAAE;gCACpC,IAAM,GAAG,GAAG,KAAK,CAAC,YAAY,CAAC,UAAU,CAAC,CAAA;gCAC1C,IAAI,GAAG,GAAG,KAAI,CAAC,YAAY,EAAE;oCAC3B,yDAAyD;oCACzD,qCAAqC;oCACrC,KAAK,GAAG,KAAI,CAAC,cAAc,CAAC,KAAK,EAAE,UAAU,GAAG,CAAC,CAAC,CAAA;oCAClD,UAAU,IAAI,CAAC,GAAG,CAAC,GAAG,C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package/dist/index.js

@@ -10,3 +10,4 @@ var tbi_1 = __importDefault(require("./tbi"));
 exports.TBI = tbi_1.default;
 var csi_1 = __importDefault(require("./csi"));
 exports.CSI = csi_1.default;
+//# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;;;;AAAA,wEAAiD;AAIxC,2BAJF,0BAAgB,CAIE;AAHzB,8CAAuB;AAGI,cAHpB,aAAG,CAGoB;AAF9B,8CAAuB;AAES,cAFzB,aAAG,CAEyB"}

package/dist/indexFile.js

@@ -115,3 +115,4 @@ var IndexFile = /** @class */ (function () {
     return IndexFile;
 }());
 exports.default = IndexFile;
+//# sourceMappingURL=indexFile.js.map

package/dist/indexFile.js.map

@@ -0,0 +1 @@
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package/dist/tabixIndexedFile.js

@@ -527,3 +527,4 @@ var TabixIndexedFile = /** @class */ (function () {
     return TabixIndexedFile;
 }());
 exports.default = TabixIndexedFile;
+//# sourceMappingURL=tabixIndexedFile.js.map

package/dist/tabixIndexedFile.js.map

@@ -0,0 +1 @@
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package/dist/tbi.js

@@ -16,7 +16,11 @@ var __extends = (this && this.__extends) || (function () {
 })();
 var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
     if (k2 === undefined) k2 = k;
-    Object.defineProperty(o, k2, { enumerable: true, get: function() { return m[k]; } });
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
 }) : (function(o, m, k, k2) {
     if (k2 === undefined) k2 = k;
     o[k2] = m[k];
@@ -324,3 +328,4 @@ var TabixIndex = /** @class */ (function (_super) {
     return TabixIndex;
 }(indexFile_1.default));
 exports.default = TabixIndex;
+//# sourceMappingURL=tbi.js.map

package/dist/tbi.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"tbi.js","sourceRoot":"","sources":["../src/tbi.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,8CAAuB;AACvB,+DAA0D;AAC1D,kDAA2B;AAC3B,yDAA6C;AAC7C,+BAAuE;AACvE,0DAAgD;AAEhD,IAAM,SAAS,GAAG,QAAQ,CAAA,CAAC,QAAQ;AACnC,IAAM,cAAc,GAAG,EAAE,CAAA;AAEzB;;GAEG;AACH,SAAS,QAAQ,CAAC,GAAW,EAAE,GAAW;IACxC,GAAG,IAAI,CAAC,CAAA,CAAC,8BAA8B;IACvC,GAAG,IAAI,CAAC,CAAA;IACR,OAAO;QACL,CAAC,CAAC,EAAE,CAAC,CAAC;QACN,CAAC,CAAC,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE,CAAC,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,CAAC;QAClC,CAAC,CAAC,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE,CAAC,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,CAAC;QAClC,CAAC,EAAE,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE,EAAE,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,CAAC;QACpC,CAAC,GAAG,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE,GAAG,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,CAAC;QACtC,CAAC,IAAI,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE,IAAI,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,CAAC;KACzC,CAAA;AACH,CAAC;AAED;IAAwC,8BAAS;IAAjD;;IA+NA,CAAC;IA9NO,8BAAS,GAAf,UAAgB,OAAe,EAAE,IAAkB;QAAlB,qBAAA,EAAA,SAAkB;;;;;4BAC/B,qBAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,EAAA;;wBAAlC,SAAS,GAAG,SAAsB;wBACxC,IAAI,CAAC,SAAS,EAAE;4BACd,sBAAO,CAAC,CAAC,EAAA;yBACV;wBACK,KAAK,GAAG,SAAS,CAAC,WAAW,CAAC,OAAO,CAAC,CAAA;wBACtC,GAAG,GAAG,SAAS,CAAC,OAAO,CAAC,KAAK,CAAC,CAAA;wBACpC,IAAI,CAAC,GAAG,EAAE;4BACR,sBAAO,CAAC,CAAC,EAAA;yBACV;wBACO,KAAK,GAAK,SAAS,CAAC,OAAO,CAAC,KAAK,CAAC,MAA7B,CAA6B;wBAC1C,IAAI,KAAK,EAAE;4BACT,sBAAO,KAAK,CAAC,SAAS,EAAA;yBACvB;wBACD,sBAAO,CAAC,CAAC,EAAA;;;;KACV;IAED,UAAU;IACV,4BAA4B;IACtB,2BAAM,GAAZ,UAAa,IAAkB;QAAlB,qBAAA,EAAA,SAAkB;;;;;;;wBACT,KAAA,uBAAK,CAAA;wBAAE,qBAAM,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,IAAI,CAAC,EAAA;4BAAjD,qBAAM,kBAAM,CAAC,SAAoC,CAAW,EAAC,EAAA;;wBAArE,KAAK,GAAG,SAA6D;wBAC3E,IAAA,uBAAgB,EAAC,IAAI,CAAC,MAAM,CAAC,CAAA;wBAE7B,0BAA0B;wBAC1B,IAAI,KAAK,CAAC,YAAY,CAAC,CAAC,CAAC,KAAK,SAAS,CAAC,aAAa,EAAE;4BACrD,MAAM,IAAI,KAAK,CAAC,gBAAgB,CAAC,CAAA;4BACjC,oDAAoD;yBACrD;wBAGK,QAAQ,GAAG,KAAK,CAAC,WAAW,CAAC,CAAC,CAAC,CAAA;wBAC/B,WAAW,GAAG,KAAK,CAAC,WAAW,CAAC,CAAC,CAAC,CAAA;wBAClC,cAAc,GAClB,WAAW,GAAG,OAAO,CAAC,CAAC,CAAC,sBAAsB,CAAC,CAAC,CAAC,gBAAgB,CAAA;wBAC7D,UAAU,GAA8B;4BAC5C,CAAC,EAAE,SAAS;4BACZ,CAAC,EAAE,KAAK;4BACR,CAAC,EAAE,KAAK;yBACT,CAAA;wBACK,MAAM,GAAG,UAAU,CAAC,WAAW,GAAG,GAAG,CAAC,CAAA;wBAC5C,IAAI,CAAC,MAAM,EAAE;4BACX,MAAM,IAAI,KAAK,CAAC,4CAAqC,WAAW,CAAE,CAAC,CAAA;yBACpE;wBACK,aAAa,GAAG;4BACpB,GAAG,EAAE,KAAK,CAAC,WAAW,CAAC,EAAE,CAAC;4BAC1B,KAAK,EAAE,KAAK,CAAC,WAAW,CAAC,EAAE,CAAC;4BAC5B,GAAG,EAAE,KAAK,CAAC,WAAW,CAAC,EAAE,CAAC;yBAC3B,CAAA;wBACK,SAAS,GAAG,KAAK,CAAC,WAAW,CAAC,EAAE,CAAC,CAAA;wBACjC,KAAK,GAAG,CAAC,CAAA;wBACT,YAAY,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,KAAK,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAA;wBACjD,YAAY,GAAG,SAAA,CAAC,EAAI,CAAC,EAAE,GAAG,KAAK,GAAG,CAAC,CAAC,CAAA,CAAA;wBACpC,QAAQ,GAAG,SAAS,CAAC,CAAC,CAAC,MAAM,CAAC,YAAY,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,IAAI,CAAA;wBAC5D,SAAS,GAAG,KAAK,CAAC,WAAW,CAAC,EAAE,CAAC,CAAA;wBAGjC,iBAAiB,GAAG,KAAK,CAAC,WAAW,CAAC,EAAE,CAAC,CAAA;wBACzC,KAA+B,IAAI,CAAC,eAAe,CACvD,KAAK,CAAC,KAAK,CAAC,EAAE,EAAE,EAAE,GAAG,iBAAiB,CAAC,CACxC,EAFO,WAAW,iBAAA,EAAE,WAAW,iBAAA,CAE/B;wBAGG,UAAU,GAAG,EAAE,GAAG,iBAAiB,CAAA;wBAEjC,OAAO,GAAG,IAAI,KAAK,CAAC,QAAQ,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC;4BAC9C,oBAAoB;4BACpB,IAAM,QAAQ,GAAG,KAAK,CAAC,WAAW,CAAC,UAAU,CAAC,CAAA;4BAC9C,UAAU,IAAI,CAAC,CAAA;4BACf,IAAM,QAAQ,GAA+B,EAAE,CAAA;4BAC/C,IAAI,KAAK,CAAA;4BACT,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,EAAE,CAAC,IAAI,CAAC,EAAE;gCACpC,IAAM,GAAG,GAAG,KAAK,CAAC,YAAY,CAAC,UAAU,CAAC,CAAA;gCAC1C,UAAU,IAAI,CAAC,CAAA;gCACf,IAAI,GAAG,GAAG,YAAY,GAAG,CAAC,EAAE;oCAC1B,MAAM,IAAI,KAAK,CACb,4DAA4D,CAC7D,CAAA;iCACF;qCAAM,IAAI,GAAG,KAAK,YAAY,GAAG,CAAC,EAAE;oCACnC,IAAM,UAAU,GAAG,KAAK,CAAC,WAAW,CAAC,UAAU,CAAC,CAAA;oCAChD,UAAU,IAAI,CAAC,CAAA;oCACf,IAAI,UAAU,KAAK,CAAC,EAAE;wCACpB,KAAK,GAAG,KAAI,CAAC,cAAc,CAAC,KAAK,EAAE,UAAU,CAAC,CAAA;qCAC/C;oCACD,UAAU,IAAI,EAAE,GAAG,UAAU,CAAA;iCAC9B;qCAAM;oCACL,IAAM,UAAU,GAAG,KAAK,CAAC,WAAW,CAAC,UAAU,CAAC,CAAA;oCAChD,UAAU,IAAI,CAAC,CAAA;oCACf,IAAM,MAAM,GAAG,IAAI,KAAK,CAAC,UAAU,CAAC,CAAA;oCACpC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,EAAE,CAAC,IAAI,CAAC,EAAE;wCACtC,IAAM,CAAC,GAAG,IAAA,yBAAS,EAAC,KAAK,EAAE,UAAU,CAAC,CAAA;wCACtC,IAAM,CAAC,GAAG,IAAA,yBAAS,EAAC,KAAK,EAAE,UAAU,GAAG,CAAC,CAAC,CAAA;wCAC1C,UAAU,IAAI,EAAE,CAAA;wCAChB,aAAa,GAAG,KAAI,CAAC,cAAc,CAAC,aAAa,EAAE,CAAC,CAAC,CAAA;wCACrD,MAAM,CAAC,CAAC,CAAC,GAAG,IAAI,eAAK,CAAC,CAAC,EAAE,CAAC,EAAE,GAAG,CAAC,CAAA;qCACjC;oCACD,QAAQ,CAAC,GAAG,CAAC,GAAG,MAAM,CAAA;iCACvB;6BACF;4BAED,mBAAmB;4BACnB,IAAM,WAAW,GAAG,KAAK,CAAC,WAAW,CAAC,UAAU,CAAC,CAAA;4BACjD,UAAU,IAAI,CAAC,CAAA;4BACf,IAAM,WAAW,GAAG,IAAI,KAAK,CAAC,WAAW,CAAC,CAAA;4BAC1C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,WAAW,EAAE,CAAC,IAAI,CAAC,EAAE;gCACvC,WAAW,CAAC,CAAC,CAAC,GAAG,IAAA,yBAAS,EAAC,KAAK,EAAE,UAAU,CAAC,CAAA;gCAC7C,UAAU,IAAI,CAAC,CAAA;gCACf,aAAa,GAAG,KAAI,CAAC,cAAc,CAAC,aAAa,EAAE,WAAW,CAAC,CAAC,CAAC,CAAC,CAAA;6BACnE;4BACD,OAAO,EAAE,QAAQ,UAAA,EAAE,WAAW,aAAA,EAAE,KAAK,OAAA,EAAE,CAAA;wBACzC,CAAC,CAAC,CAAA;wBAEF,sBAAO;gCACL,OA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package/dist/util.js

@@ -161,3 +161,4 @@ function optimizeChunks(chunks, lowest) {
     return mergedChunks;
 }
 exports.optimizeChunks = optimizeChunks;
+//# sourceMappingURL=util.js.map

package/dist/util.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"util.js","sourceRoot":"","sources":["../src/util.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAGA,SAAgB,YAAY,CAAC,IAAU;IACrC,IACE,IAAI,CAAC,WAAW,CAAC,MAAM,CAAC,gBAAgB,CAAC;QACzC,IAAI,CAAC,QAAQ,CAAC,MAAM,CAAC,gBAAgB,CAAC,EACtC;QACA,MAAM,IAAI,KAAK,CAAC,kBAAkB,CAAC,CAAA;KACpC;IACD,OAAO,IAAI,CAAC,QAAQ,EAAE,CAAA;AACxB,CAAC;AARD,oCAQC;AAED;IAAyB,8BAAK;IAA9B;;IAEA,CAAC;IAAD,iBAAC;AAAD,CAAC,AAFD,CAAyB,KAAK,GAE7B;AACD;;;;;;;;;;GAUG;AACH,SAAgB,gBAAgB,CAAC,MAAoB;IACnD,IAAI,CAAC,MAAM,EAAE;QACX,OAAM;KACP;IAED,IAAI,MAAM,CAAC,OAAO,EAAE;QAClB,8BAA8B;QAC9B,IAAI,OAAO,YAAY,KAAK,WAAW,EAAE;YACvC,qCAAqC;YACrC,MAAM,IAAI,YAAY,CAAC,SAAS,EAAE,YAAY,CAAC,CAAA;SAChD;aAAM;YACL,IAAM,CAAC,GAAG,IAAI,UAAU,CAAC,SAAS,CAAC,CAAA;YACnC,CAAC,CAAC,IAAI,GAAG,aAAa,CAAA;YACtB,MAAM,CAAC,CAAA;SACR;KACF;AACH,CAAC;AAhBD,4CAgBC;AAED;;;;;GAKG;AACH,SAAsB,eAAe,CAAC,MAAoB;;;;wBACxD,qBAAM,OAAO,CAAC,OAAO,EAAE,EAAA;;oBAAvB,SAAuB,CAAA;oBACvB,gBAAgB,CAAC,MAAM,CAAC,CAAA;;;;;CACzB;AAHD,0CAGC;AAED,SAAgB,cAAc,CAAC,MAAa,EAAE,MAAa;IACzD,OAAO,CACL,MAAM,CAAC,IAAI,CAAC,aAAa,GAAG,MAAM,CAAC,IAAI,CAAC,aAAa,GAAG,KAAK;QAC7D,MAAM,CAAC,IAAI,CAAC,aAAa,GAAG,MAAM,CAAC,IAAI,CAAC,aAAa,GAAG,OAAO,CAChE,CAAA;AACH,CAAC;AALD,wCAKC;AAED,SAAgB,cAAc,CAAC,MAAe,EAAE,MAAqB;IACnE,IAAM,YAAY,GAAY,EAAE,CAAA;IAChC,IAAI,SAAS,GAAiB,IAAI,CAAA;IAElC,IAAI,MAAM,CAAC,MAAM,KAAK,CAAC,EAAE;QACvB,OAAO,MAAM,CAAA;KACd;IAED,MAAM,CAAC,IAAI,CAAC,UAAU,EAAE,EAAE,EAAE;QAC1B,IAAM,GAAG,GAAG,EAAE,CAAC,IAAI,CAAC,aAAa,GAAG,EAAE,CAAC,IAAI,CAAC,aAAa,CAAA;QACzD,IAAI,GAAG,KAAK,CAAC,EAAE;YACb,OAAO,GAAG,CAAA;SACX;aAAM;YACL,OAAO,EAAE,CAAC,IAAI,CAAC,YAAY,GAAG,EAAE,CAAC,IAAI,CAAC,YAAY,CAAA;SACnD;IACH,CAAC,CAAC,CAAA;IAEF,MAAM,CAAC,OAAO,CAAC,UAAA,KAAK;QAClB,IAAI,CAAC,MAAM,IAAI,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE;YAC/C,IAAI,SAAS,KAAK,IAAI,EAAE;gBACtB,YAAY,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;gBACxB,SAAS,GAAG,KAAK,CAAA;aAClB;iBAAM;gBACL,IAAI,cAAc,CAAC,SAAS,EAAE,KAAK,CAAC,EAAE;oBACpC,IAAI,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,SAAS,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE;wBAC5C,SAAS,CAAC,IAAI,GAAG,KAAK,CAAC,IAAI,CAAA;qBAC5B;iBACF;qBAAM;oBACL,YAAY,CAAC,IAAI,CAAC,KAAK,CAAC,CAAA;oBACxB,SAAS,GAAG,KAAK,CAAA;iBAClB;aACF;SACF;QACD,SAAS;QACT,2CAA2C;QAC3C,IAAI;IACN,CAAC,CAAC,CAAA;IAEF,OAAO,YAAY,CAAA;AACrB,CAAC;AAvCD,wCAuCC"}

package/dist/virtualOffset.js

@@ -46,3 +46,4 @@ function fromBytes(bytes, offset, bigendian) {
         bytes[offset + 2], (bytes[offset + 1] << 8) | bytes[offset]);
 }
 exports.fromBytes = fromBytes;
+//# sourceMappingURL=virtualOffset.js.map

package/dist/virtualOffset.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"virtualOffset.js","sourceRoot":"","sources":["../src/virtualOffset.ts"],"names":[],"mappings":";;;AAAA;IAGE,uBAAY,aAAqB,EAAE,YAAoB;QACrD,IAAI,CAAC,aAAa,GAAG,aAAa,CAAA,CAAC,wCAAwC;QAC3E,IAAI,CAAC,YAAY,GAAG,YAAY,CAAA,CAAC,sCAAsC;IACzE,CAAC;IAED,gCAAQ,GAAR;QACE,OAAO,UAAG,IAAI,CAAC,aAAa,cAAI,IAAI,CAAC,YAAY,CAAE,CAAA;IACrD,CAAC;IAED,iCAAS,GAAT,UAAU,CAAgB;QACxB,OAAO,CACL,IAAI,CAAC,aAAa,GAAG,CAAC,CAAC,aAAa,IAAI,IAAI,CAAC,YAAY,GAAG,CAAC,CAAC,YAAY,CAC3E,CAAA;IACH,CAAC;IAEM,iBAAG,GAAV;QAAW,cAAwB;aAAxB,UAAwB,EAAxB,qBAAwB,EAAxB,IAAwB;YAAxB,yBAAwB;;QACjC,IAAI,GAAG,CAAA;QACP,IAAI,CAAC,GAAG,CAAC,CAAA;QACT,OAAO,CAAC,GAAG,EAAE,CAAC,IAAI,CAAC,EAAE;YACnB,GAAG,GAAG,IAAI,CAAC,CAAC,CAAC,CAAA;SACd;QACD,OAAO,CAAC,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC,IAAI,CAAC,EAAE;YAC9B,IAAI,GAAG,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,EAAE;gBAC9B,GAAG,GAAG,IAAI,CAAC,CAAC,CAAC,CAAA;aACd;SACF;QACD,OAAO,GAAG,CAAA;IACZ,CAAC;IACH,oBAAC;AAAD,CAAC,AA/BD,IA+BC;;AACD,SAAgB,SAAS,CAAC,KAAa,EAAE,MAAU,EAAE,SAAiB;IAA7B,uBAAA,EAAA,UAAU;IAAE,0BAAA,EAAA,iBAAiB;IACpE,IAAI,SAAS,EAAE;QACb,MAAM,IAAI,KAAK,CAAC,iDAAiD,CAAC,CAAA;KACnE;IAED,OAAO,IAAI,aAAa,CACtB,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,GAAG,aAAa;QAC/B,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,GAAG,WAAW;QAC/B,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,GAAG,SAAS;QAC7B,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,GAAG,OAAO;QAC3B,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,GAAG,KAAK;QACzB,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,EACnB,CAAC,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,IAAI,CAAC,CAAC,GAAG,KAAK,CAAC,MAAM,CAAC,CACzC,CAAA;AACH,CAAC;AAdD,8BAcC"}

package/esm/chunk.js

@@ -1,7 +1,5 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
 // little class representing a chunk in the index
-class Chunk {
+export default class Chunk {
     /**
      * @param {VirtualOffset} minv
      * @param {VirtualOffset} maxv
@@ -32,4 +30,4 @@ class Chunk {
         return this.maxv.blockPosition + (1 << 16) - this.minv.blockPosition;
     }
 }
-exports.default = Chunk;
+//# sourceMappingURL=chunk.js.map

package/esm/chunk.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"chunk.js","sourceRoot":"","sources":["../src/chunk.ts"],"names":[],"mappings":"AAEA,iDAAiD;AACjD,MAAM,CAAC,OAAO,OAAO,KAAK;IAMxB;;;;;OAKG;IACH,YACE,IAAmB,EACnB,IAAmB,EACnB,GAAW,EACX,WAAW,GAAG,SAAS;QAEvB,IAAI,CAAC,IAAI,GAAG,IAAI,CAAA;QAChB,IAAI,CAAC,IAAI,GAAG,IAAI,CAAA;QAChB,IAAI,CAAC,GAAG,GAAG,GAAG,CAAA;QACd,IAAI,CAAC,YAAY,GAAG,WAAW,CAAA;IACjC,CAAC;IAED,cAAc;QACZ,OAAO,GAAG,IAAI,CAAC,IAAI,KAAK,IAAI,CAAC,IAAI,SAC/B,IAAI,CAAC,GACP,iBAAiB,IAAI,CAAC,WAAW,EAAE,GAAG,CAAA;IACxC,CAAC;IAED,QAAQ;QACN,OAAO,IAAI,CAAC,cAAc,EAAE,CAAA;IAC9B,CAAC;IAED,SAAS,CAAC,CAAQ;QAChB,OAAO,CACL,IAAI,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC;YAC3B,IAAI,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC;YAC3B,IAAI,CAAC,GAAG,GAAG,CAAC,CAAC,GAAG,CACjB,CAAA;IACH,CAAC;IAED,WAAW;QACT,IAAI,IAAI,CAAC,YAAY,KAAK,SAAS,EAAE;YACnC,OAAO,IAAI,CAAC,YAAY,CAAA;SACzB;QACD,OAAO,IAAI,CAAC,IAAI,CAAC,aAAa,GAAG,CAAC,CAAC,IAAI,EAAE,CAAC,GAAG,IAAI,CAAC,IAAI,CAAC,aAAa,CAAA;IACtE,CAAC;CACF"}

package/esm/csi.js

@@ -1,33 +1,9 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    Object.defineProperty(o, k2, { enumerable: true, get: function() { return m[k]; } });
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const long_1 = __importDefault(require("long"));
-const bgzf_filehandle_1 = require("@gmod/bgzf-filehandle");
-const virtualOffset_1 = __importStar(require("./virtualOffset"));
-const chunk_1 = __importDefault(require("./chunk"));
-const util_1 = require("./util");
-const indexFile_1 = __importDefault(require("./indexFile"));
+import Long from 'long';
+import { unzip } from '@gmod/bgzf-filehandle';
+import VirtualOffset, { fromBytes } from './virtualOffset';
+import Chunk from './chunk';
+import { longToNumber, optimizeChunks } from './util';
+import IndexFile from './indexFile';
 const CSI1_MAGIC = 21582659; // CSI\1
 const CSI2_MAGIC = 38359875; // CSI\2
 function lshift(num, bits) {
@@ -36,7 +12,7 @@ function lshift(num, bits) {
 function rshift(num, bits) {
     return Math.floor(num / 2 ** bits);
 }
-class CSI extends indexFile_1.default {
+export default class CSI extends IndexFile {
     constructor(args) {
         super(args);
         this.maxBinNumber = 0;
@@ -117,7 +93,7 @@ class CSI extends indexFile_1.default {
     }
     // fetch and parse the index
     async _parse(opts = {}) {
-        const bytes = await (0, bgzf_filehandle_1.unzip)((await this.filehandle.readFile(opts)));
+        const bytes = await unzip((await this.filehandle.readFile(opts)));
         // check TBI magic numbers
         let csiVersion;
         if (bytes.readUInt32LE(0) === CSI1_MAGIC) {
@@ -161,17 +137,17 @@ class CSI extends indexFile_1.default {
                     currOffset += 4 + 8 + 4 + 16 + 16;
                 }
                 else {
-                    const loffset = (0, virtualOffset_1.fromBytes)(bytes, currOffset + 4);
+                    const loffset = fromBytes(bytes, currOffset + 4);
                     firstDataLine = this._findFirstData(firstDataLine, loffset);
                     const chunkCount = bytes.readInt32LE(currOffset + 12);
                     currOffset += 16;
                     const chunks = new Array(chunkCount);
                     for (let k = 0; k < chunkCount; k += 1) {
-                        const u = (0, virtualOffset_1.fromBytes)(bytes, currOffset);
-                        const v = (0, virtualOffset_1.fromBytes)(bytes, currOffset + 8);
+                        const u = fromBytes(bytes, currOffset);
+                        const v = fromBytes(bytes, currOffset + 8);
                         currOffset += 16;
                         // this._findFirstData(data, u)
-                        chunks[k] = new chunk_1.default(u, v, bin);
+                        chunks[k] = new Chunk(u, v, bin);
                     }
                     binIndex[bin] = chunks;
                 }
@@ -192,7 +168,7 @@ class CSI extends indexFile_1.default {
         };
     }
     parsePseudoBin(bytes, offset) {
-        const lineCount = (0, util_1.longToNumber)(long_1.default.fromBytesLE(Array.prototype.slice.call(bytes, offset + 28, offset + 36), true));
+        const lineCount = longToNumber(Long.fromBytesLE(Array.prototype.slice.call(bytes, offset + 28, offset + 36), true));
         return { lineCount };
     }
     async blocksForRange(refName, min, max, opts = {}) {
@@ -217,12 +193,12 @@ class CSI extends indexFile_1.default {
                 if (ba.binIndex[bin]) {
                     const binChunks = ba.binIndex[bin];
                     for (let c = 0; c < binChunks.length; ++c) {
-                        chunks.push(new chunk_1.default(binChunks[c].minv, binChunks[c].maxv, bin));
+                        chunks.push(new Chunk(binChunks[c].minv, binChunks[c].maxv, bin));
                     }
                 }
             }
         }
-        return (0, util_1.optimizeChunks)(chunks, new virtualOffset_1.default(0, 0));
+        return optimizeChunks(chunks, new VirtualOffset(0, 0));
     }
     /**
      * calculate the list of bins that may overlap with region [beg,end) (zero-based half-open)
@@ -251,4 +227,4 @@ class CSI extends indexFile_1.default {
         return bins;
     }
 }
-exports.default = CSI;
+//# sourceMappingURL=csi.js.map

package/esm/csi.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"csi.js","sourceRoot":"","sources":["../src/csi.ts"],"names":[],"mappings":"AAAA,OAAO,IAAI,MAAM,MAAM,CAAA;AACvB,OAAO,EAAE,KAAK,EAAE,MAAM,uBAAuB,CAAA;AAE7C,OAAO,aAAa,EAAE,EAAE,SAAS,EAAE,MAAM,iBAAiB,CAAA;AAC1D,OAAO,KAAK,MAAM,SAAS,CAAA;AAC3B,OAAO,EAAE,YAAY,EAAE,cAAc,EAAE,MAAM,QAAQ,CAAA;AAErD,OAAO,SAAsB,MAAM,aAAa,CAAA;AAEhD,MAAM,UAAU,GAAG,QAAQ,CAAA,CAAC,QAAQ;AACpC,MAAM,UAAU,GAAG,QAAQ,CAAA,CAAC,QAAQ;AAEpC,SAAS,MAAM,CAAC,GAAW,EAAE,IAAY;IACvC,OAAO,GAAG,GAAG,CAAC,IAAI,IAAI,CAAA;AACxB,CAAC;AACD,SAAS,MAAM,CAAC,GAAW,EAAE,IAAY;IACvC,OAAO,IAAI,CAAC,KAAK,CAAC,GAAG,GAAG,CAAC,IAAI,IAAI,CAAC,CAAA;AACpC,CAAC;AAED,MAAM,CAAC,OAAO,OAAO,GAAI,SAAQ,SAAS;IAIxC,YAAY,IAAS;QACnB,KAAK,CAAC,IAAI,CAAC,CAAA;QACX,IAAI,CAAC,YAAY,GAAG,CAAC,CAAA;QACrB,IAAI,CAAC,KAAK,GAAG,CAAC,CAAA;QACd,IAAI,CAAC,QAAQ,GAAG,CAAC,CAAA;IACnB,CAAC;IACD,KAAK,CAAC,SAAS,CAAC,OAAe,EAAE,OAAgB,EAAE;QACjD,MAAM,SAAS,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;QACxC,IAAI,CAAC,SAAS,EAAE;YACd,OAAO,CAAC,CAAC,CAAA;SACV;QACD,MAAM,KAAK,GAAG,SAAS,CAAC,WAAW,CAAC,OAAO,CAAC,CAAA;QAC5C,MAAM,GAAG,GAAG,SAAS,CAAC,OAAO,CAAC,KAAK,CAAC,CAAA;QACpC,IAAI,CAAC,GAAG,EAAE;YACR,OAAO,CAAC,CAAC,CAAA;SACV;QACD,MAAM,EAAE,KAAK,EAAE,GAAG,SAAS,CAAC,OAAO,CAAC,KAAK,CAAC,CAAA;QAC1C,IAAI,KAAK,EAAE;YACT,OAAO,KAAK,CAAC,SAAS,CAAA;SACvB;QACD,OAAO,CAAC,CAAC,CAAA;IACX,CAAC;IACD,KAAK,CAAC,QAAQ;QACZ,MAAM,IAAI,KAAK,CAAC,qCAAqC,CAAC,CAAA;QACtD,OAAO,EAAE,CAAA;IACX,CAAC;IAED,YAAY,CAAC,KAAa,EAAE,MAAc,EAAE,SAAiB;QAC3D,IAAI,SAAS,GAAG,EAAE,EAAE;YAClB,OAAO;gBACL,WAAW,EAAE,EAAE;gBACf,WAAW,EAAE,EAAE;aAChB,CAAA;SACF;QAED,MAAM,WAAW,GAAG,KAAK,CAAC,WAAW,CAAC,MAAM,CAAC,CAAA;QAC7C,MAAM,cAAc,GAClB,WAAW,GAAG,OAAO,CAAC,CAAC,CAAC,sBAAsB,CAAC,CAAC,CAAC,gBAAgB,CAAA;QACnE,MAAM,MAAM,GACV,EAAE,CAAC,EAAE,SAAS,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,KAAK,EAGnC,CAAC,WAAW,GAAG,GAAG,CAAC,CAAA;QACpB,IAAI,CAAC,MAAM,EAAE;YACX,MAAM,IAAI,KAAK,CAAC,qCAAqC,WAAW,EAAE,CAAC,CAAA;SACpE;QACD,MAAM,aAAa,GAAG;YACpB,GAAG,EAAE,KAAK,CAAC,WAAW,CAAC,MAAM,GAAG,CAAC,CAAC;YAClC,KAAK,EAAE,KAAK,CAAC,WAAW,CAAC,MAAM,GAAG,CAAC,CAAC;YACpC,GAAG,EAAE,KAAK,CAAC,WAAW,CAAC,MAAM,GAAG,EAAE,CAAC;SACpC,CAAA;QACD,MAAM,SAAS,GAAG,KAAK,CAAC,WAAW,CAAC,MAAM,GAAG,EAAE,CAAC,CAAA;QAChD,MAAM,QAAQ,GAAG,SAAS,CAAC,CAAC,CAAC,MAAM,CAAC,YAAY,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,EAAE,CAAA;QAChE,MAAM,SAAS,GAAG,KAAK,CAAC,WAAW,CAAC,MAAM,GAAG,EAAE,CAAC,CAAA;QAChD,MAAM,iBAAiB,GAAG,KAAK,CAAC,WAAW,CAAC,MAAM,GAAG,EAAE,CAAC,CAAA;QAExD,MAAM,EAAE,WAAW,EAAE,WAAW,EAAE,GAAG,IAAI,CAAC,eAAe,CACvD,KAAK,CAAC,KAAK,CAAC,MAAM,GAAG,EAAE,EAAE,MAAM,GAAG,EAAE,GAAG,iBAAiB,CAAC,CAC1D,CAAA;QAED,OAAO;YACL,WAAW;YACX,WAAW;YACX,SAAS;YACT,QAAQ;YACR,aAAa;YACb,MAAM;YACN,cAAc;SACf,CAAA;IACH,CAAC;IAED,eAAe,CAAC,UAAkB;QAChC,IAAI,SAAS,GAAG,CAAC,CAAA;QACjB,IAAI,aAAa,GAAG,CAAC,CAAA;QACrB,MAAM,WAAW,GAAG,EAAE,CAAA;QACtB,MAAM,WAAW,GAA8B,EAAE,CAAA;QACjD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,CAAC,MAAM,EAAE,CAAC,IAAI,CAAC,EAAE;YAC7C,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,EAAE;gBAClB,IAAI,aAAa,GAAG,CAAC,EAAE;oBACrB,IAAI,OAAO,GAAG,UAAU,CAAC,QAAQ,CAAC,MAAM,EAAE,aAAa,EAAE,CAAC,CAAC,CAAA;oBAC3D,OAAO,GAAG,IAAI,CAAC,YAAY,CAAC,OAAO,CAAC,CAAA;oBACpC,WAAW,CAAC,SAAS,CAAC,GAAG,OAAO,CAAA;oBAChC,WAAW,CAAC,OAAO,CAAC,GAAG,SAAS,CAAA;iBACjC;gBACD,aAAa,GAAG,CAAC,GAAG,CAAC,CAAA;gBACrB,SAAS,IAAI,CAAC,CAAA;aACf;SACF;QACD,OAAO,EAAE,WAAW,EAAE,WAAW,EAAE,CAAA;IACrC,CAAC;IAED,4BAA4B;IAE5B,KAAK,CAAC,MAAM,CAAC,OAAgB,EAAE;QAC7B,MAAM,KAAK,GAAG,MAAM,KAAK,CAAC,CAAC,MAAM,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAW,CAAC,CAAA;QAE3E,0BAA0B;QAC1B,IAAI,UAAU,CAAA;QACd,IAAI,KAAK,CAAC,YAAY,CAAC,CAAC,CAAC,KAAK,UAAU,EAAE;YACxC,UAAU,GAAG,CAAC,CAAA;SACf;aAAM,IAAI,KAAK,CAAC,YAAY,CAAC,CAAC,CAAC,KAAK,UAAU,EAAE;YAC/C,UAAU,GAAG,CAAC,CAAA;SACf;aAAM;YACL,MAAM,IAAI,KAAK,CAAC,gBAAgB,CAAC,CAAA;YACjC,oDAAoD;SACrD;QAED,IAAI,CAAC,QAAQ,GAAG,KAAK,CAAC,WAAW,CAAC,CAAC,CAAC,CAAA;QACpC,IAAI,CAAC,KAAK,GAAG,KAAK,CAAC,WAAW,CAAC,CAAC,CAAC,CAAA;QACjC,IAAI,CAAC,YAAY,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,IAAI,CAAC,KAAK,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAA;QAC3D,MAAM,YAAY,GAAG,CAAC,IAAI,CAAC,IAAI,CAAC,QAAQ,GAAG,IAAI,CAAC,KAAK,GAAG,CAAC,CAAC,CAAA;QAE1D,MAAM,SAAS,GAAG,KAAK,CAAC,WAAW,CAAC,EAAE,CAAC,CAAA;QACvC,IAAI,GAAG,GAGH;YACF,WAAW,EAAE,EAAE;YACf,WAAW,EAAE,EAAE;SAChB,CAAA;QACD,IAAI,SAAS,EAAE;YACb,GAAG,GAAG,IAAI,CAAC,YAAY,CAAC,KAAK,EAAE,EAAE,EAAE,SAAS,CAAC,CAAA;SAC9C;QACD,MAAM,QAAQ,GAAG,KAAK,CAAC,WAAW,CAAC,EAAE,GAAG,SAAS,CAAC,CAAA;QAElD,+CAA+C;QAC/C,IAAI,aAAwC,CAAA;QAC5C,IAAI,UAAU,GAAG,EAAE,GAAG,SAAS,GAAG,CAAC,CAAA;QACnC,MAAM,OAAO,GAAG,IAAI,KAAK,CAAC,QAAQ,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,GAAG,EAAE;YACnD,oBAAoB;YACpB,MAAM,QAAQ,GAAG,KAAK,CAAC,WAAW,CAAC,UAAU,CAAC,CAAA;YAC9C,UAAU,IAAI,CAAC,CAAA;YACf,MAAM,QAAQ,GAA+B,EAAE,CAAA;YAC/C,IAAI,KAAK,CAAA,CAAC,iDAAiD;YAC3D,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,EAAE,CAAC,IAAI,CAAC,EAAE;gBACpC,MAAM,GAAG,GAAG,KAAK,CAAC,YAAY,CAAC,UAAU,CAAC,CAAA;gBAC1C,IAAI,GAAG,GAAG,IAAI,CAAC,YAAY,EAAE;oBAC3B,yDAAyD;oBACzD,qCAAqC;oBACrC,KAAK,GAAG,IAAI,CAAC,cAAc,CAAC,KAAK,EAAE,UAAU,GAAG,CAAC,CAAC,CAAA;oBAClD,UAAU,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG,EAAE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package/esm/index.js

@@ -1,12 +1,5 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.CSI = exports.TBI = exports.TabixIndexedFile = void 0;
-const tabixIndexedFile_1 = __importDefault(require("./tabixIndexedFile"));
-exports.TabixIndexedFile = tabixIndexedFile_1.default;
-const tbi_1 = __importDefault(require("./tbi"));
-exports.TBI = tbi_1.default;
-const csi_1 = __importDefault(require("./csi"));
-exports.CSI = csi_1.default;
+import TabixIndexedFile from './tabixIndexedFile';
+import TBI from './tbi';
+import CSI from './csi';
+export { TabixIndexedFile, TBI, CSI };
+//# sourceMappingURL=index.js.map

package/esm/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,gBAAgB,MAAM,oBAAoB,CAAA;AACjD,OAAO,GAAG,MAAM,OAAO,CAAA;AACvB,OAAO,GAAG,MAAM,OAAO,CAAA;AAEvB,OAAO,EAAE,gBAAgB,EAAE,GAAG,EAAE,GAAG,EAAE,CAAA"}

package/esm/indexFile.js

@@ -1,11 +1,6 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const abortable_promise_cache_1 = __importDefault(require("abortable-promise-cache"));
-const quick_lru_1 = __importDefault(require("quick-lru"));
-class IndexFile {
+import AbortablePromiseCache from 'abortable-promise-cache';
+import QuickLRU from 'quick-lru';
+export default class IndexFile {
     /**
      * @param {filehandle} filehandle
      * @param {function} [renameRefSeqs]
@@ -31,8 +26,8 @@ class IndexFile {
     }
     async parse(opts = {}) {
         if (!this._parseCache) {
-            this._parseCache = new abortable_promise_cache_1.default({
-                cache: new quick_lru_1.default({ maxSize: 1 }),
+            this._parseCache = new AbortablePromiseCache({
+                cache: new QuickLRU({ maxSize: 1 }),
                 fill: () => this._parse(opts),
             });
         }
@@ -42,4 +37,4 @@ class IndexFile {
         return !!((await this.parse(opts)).indices[seqId] || {}).binIndex;
     }
 }
-exports.default = IndexFile;
+//# sourceMappingURL=indexFile.js.map

package/esm/indexFile.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"indexFile.js","sourceRoot":"","sources":["../src/indexFile.ts"],"names":[],"mappings":"AAAA,OAAO,qBAAqB,MAAM,yBAAyB,CAAA;AAC3D,OAAO,QAAQ,MAAM,WAAW,CAAA;AAWhC,MAAM,CAAC,OAAO,OAAgB,SAAS;IAKrC;;;OAGG;IACH,YAAY,EACV,UAAU,EACV,aAAa,GAAG,CAAC,CAAS,EAAE,EAAE,CAAC,CAAC,GAIjC;QACC,IAAI,CAAC,UAAU,GAAG,UAAU,CAAA;QAC5B,IAAI,CAAC,YAAY,GAAG,aAAa,CAAA;IACnC,CAAC;IASM,KAAK,CAAC,WAAW,CAAC,OAAgB,EAAE;QACzC,6DAA6D;QAC7D,MAAM,EAAE,OAAO,EAAE,GAAG,IAAI,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;QACnD,OAAO,IAAI,CAAA;IACb,CAAC;IASD,cAAc,CACZ,UAAqC,EACrC,aAA4B;QAE5B,IAAI,UAAU,EAAE;YACd,OAAO,UAAU,CAAC,SAAS,CAAC,aAAa,CAAC,GAAG,CAAC;gBAC5C,CAAC,CAAC,aAAa;gBACf,CAAC,CAAC,UAAU,CAAA;SACf;aAAM;YACL,OAAO,aAAa,CAAA;SACrB;IACH,CAAC;IAED,KAAK,CAAC,KAAK,CAAC,OAAgB,EAAE;QAC5B,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE;YACrB,IAAI,CAAC,WAAW,GAAG,IAAI,qBAAqB,CAAC;gBAC3C,KAAK,EAAE,IAAI,QAAQ,CAAC,EAAE,OAAO,EAAE,CAAC,EAAE,CAAC;gBACnC,IAAI,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC;aAC9B,CAAC,CAAA;SACH;QACD,OAAO,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,OAAO,EAAE,IAAI,EAAE,SAAS,CAAC,CAAA;IACvD,CAAC;IAED,KAAK,CAAC,SAAS,CAAC,KAAa,EAAE,OAAgB,EAAE;QAC/C,OAAO,CAAC,CAAC,CAAC,CAAC,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,OAAO,CAAC,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC,QAAQ,CAAA;IACnE,CAAC;CACF"}

package/esm/tabixIndexedFile.js

@@ -1,21 +1,16 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const abortable_promise_cache_1 = __importDefault(require("abortable-promise-cache"));
-const quick_lru_1 = __importDefault(require("quick-lru"));
-const generic_filehandle_1 = require("generic-filehandle");
-const bgzf_filehandle_1 = require("@gmod/bgzf-filehandle");
-const util_1 = require("./util");
-const tbi_1 = __importDefault(require("./tbi"));
-const csi_1 = __importDefault(require("./csi"));
+import AbortablePromiseCache from 'abortable-promise-cache';
+import LRU from 'quick-lru';
+import { LocalFile } from 'generic-filehandle';
+import { unzip, unzipChunkSlice } from '@gmod/bgzf-filehandle';
+import { checkAbortSignal } from './util';
+import TBI from './tbi';
+import CSI from './csi';
 function timeout(time) {
     return new Promise(resolve => {
         setTimeout(resolve, time);
     });
 }
-class TabixIndexedFile {
+export default class TabixIndexedFile {
     /**
      * @param {object} args
      * @param {string} [args.path]
@@ -36,38 +31,38 @@ class TabixIndexedFile {
             this.filehandle = filehandle;
         }
         else if (path) {
-            this.filehandle = new generic_filehandle_1.LocalFile(path);
+            this.filehandle = new LocalFile(path);
         }
         else {
             throw new TypeError('must provide either filehandle or path');
         }
         if (tbiFilehandle) {
-            this.index = new tbi_1.default({
+            this.index = new TBI({
                 filehandle: tbiFilehandle,
                 renameRefSeqs,
             });
         }
         else if (csiFilehandle) {
-            this.index = new csi_1.default({
+            this.index = new CSI({
                 filehandle: csiFilehandle,
                 renameRefSeqs,
             });
         }
         else if (tbiPath) {
-            this.index = new tbi_1.default({
-                filehandle: new generic_filehandle_1.LocalFile(tbiPath),
+            this.index = new TBI({
+                filehandle: new LocalFile(tbiPath),
                 renameRefSeqs,
             });
         }
         else if (csiPath) {
-            this.index = new csi_1.default({
-                filehandle: new generic_filehandle_1.LocalFile(csiPath),
+            this.index = new CSI({
+                filehandle: new LocalFile(csiPath),
                 renameRefSeqs,
             });
         }
         else if (path) {
-            this.index = new tbi_1.default({
-                filehandle: new generic_filehandle_1.LocalFile(`${path}.tbi`),
+            this.index = new TBI({
+                filehandle: new LocalFile(`${path}.tbi`),
                 renameRefSeqs,
             });
         }
@@ -76,8 +71,8 @@ class TabixIndexedFile {
         }
         this.chunkSizeLimit = chunkSizeLimit;
         this.renameRefSeq = renameRefSeqs;
-        this.chunkCache = new abortable_promise_cache_1.default({
-            cache: new quick_lru_1.default({
+        this.chunkCache = new AbortablePromiseCache({
+            cache: new LRU({
                 maxSize: Math.floor(chunkCacheSize / (1 << 16)),
             }),
             fill: this.readChunk.bind(this),
@@ -111,7 +106,7 @@ class TabixIndexedFile {
             throw new TypeError('line callback must be provided');
         }
         const metadata = await this.index.getMetadata(options);
-        (0, util_1.checkAbortSignal)(signal);
+        checkAbortSignal(signal);
         if (!start) {
             start = 0;
         }
@@ -125,7 +120,7 @@ class TabixIndexedFile {
             return;
         }
         const chunks = await this.index.blocksForRange(refName, start, end, options);
-        (0, util_1.checkAbortSignal)(signal);
+        checkAbortSignal(signal);
         // check the chunks for any that are over the size limit.  if
         // any are, don't fetch any of them
         for (let i = 0; i < chunks.length; i += 1) {
@@ -144,7 +139,7 @@ class TabixIndexedFile {
                 ? new TextDecoder('utf-8').decode(buffer)
                 : buffer.toString()).split('\n');
             lines.pop();
-            (0, util_1.checkAbortSignal)(signal);
+            checkAbortSignal(signal);
             let blockStart = c.minv.dataPosition;
             let pos;
             for (let i = 0; i < lines.length; i += 1) {
@@ -181,7 +176,7 @@ class TabixIndexedFile {
                 // yield if we have emitted beyond the yield limit
                 if (last - Date.now() > 500) {
                     last = Date.now();
-                    (0, util_1.checkAbortSignal)(signal);
+                    checkAbortSignal(signal);
                     await timeout(1);
                 }
             }
@@ -199,16 +194,16 @@ class TabixIndexedFile {
      */
     async getHeaderBuffer(opts = {}) {
         const { firstDataLine, metaChar, maxBlockSize } = await this.getMetadata(opts);
-        (0, util_1.checkAbortSignal)(opts.signal);
+        checkAbortSignal(opts.signal);
         const maxFetch = firstDataLine && firstDataLine.blockPosition
             ? firstDataLine.blockPosition + maxBlockSize
             : maxBlockSize;
         // TODO: what if we don't have a firstDataLine, and the header
         // actually takes up more than one block? this case is not covered here
         let bytes = await this._readRegion(0, maxFetch, opts);
-        (0, util_1.checkAbortSignal)(opts.signal);
+        checkAbortSignal(opts.signal);
         try {
-            bytes = await (0, bgzf_filehandle_1.unzip)(bytes);
+            bytes = await unzip(bytes);
         }
         catch (e) {
             console.error(e);
@@ -242,7 +237,7 @@ class TabixIndexedFile {
      */
     async getHeader(opts = {}) {
         const bytes = await this.getHeaderBuffer(opts);
-        (0, util_1.checkAbortSignal)(opts.signal);
+        checkAbortSignal(opts.signal);
         return bytes.toString('utf8');
     }
     /**
@@ -393,11 +388,11 @@ class TabixIndexedFile {
         // and stop when done
         const compressedData = await this._readRegion(chunk.minv.blockPosition, chunk.fetchedSize(), opts);
         try {
-            return (0, bgzf_filehandle_1.unzipChunkSlice)(compressedData, chunk);
+            return unzipChunkSlice(compressedData, chunk);
         }
         catch (e) {
             throw new Error(`error decompressing chunk ${chunk.toString()} ${e}`);
         }
     }
 }
-exports.default = TabixIndexedFile;
+//# sourceMappingURL=tabixIndexedFile.js.map

package/esm/tabixIndexedFile.js.map

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