@gmod/tabix 1.5.11 → 1.5.13
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +13 -4
- package/dist/chunk.d.ts +0 -6
- package/dist/chunk.js +1 -6
- package/dist/chunk.js.map +1 -1
- package/dist/csi.d.ts +6 -16
- package/dist/csi.js +4 -7
- package/dist/csi.js.map +1 -1
- package/dist/index.d.ts +3 -4
- package/dist/index.js +7 -7
- package/dist/index.js.map +1 -1
- package/dist/indexFile.d.ts +2 -6
- package/dist/indexFile.js +4 -3
- package/dist/indexFile.js.map +1 -1
- package/dist/tabixIndexedFile.d.ts +2 -4
- package/dist/tabixIndexedFile.js +26 -47
- package/dist/tabixIndexedFile.js.map +1 -1
- package/dist/tbi.d.ts +3 -9
- package/dist/tbi.js +2 -3
- package/dist/tbi.js.map +1 -1
- package/dist/util.js +1 -6
- package/dist/util.js.map +1 -1
- package/dist/virtualOffset.js.map +1 -1
- package/esm/chunk.d.ts +0 -6
- package/esm/chunk.js +1 -6
- package/esm/chunk.js.map +1 -1
- package/esm/csi.d.ts +6 -16
- package/esm/csi.js +4 -5
- package/esm/csi.js.map +1 -1
- package/esm/index.d.ts +3 -4
- package/esm/index.js +3 -4
- package/esm/index.js.map +1 -1
- package/esm/indexFile.d.ts +2 -6
- package/esm/indexFile.js +4 -3
- package/esm/indexFile.js.map +1 -1
- package/esm/tabixIndexedFile.d.ts +2 -4
- package/esm/tabixIndexedFile.js +26 -47
- package/esm/tabixIndexedFile.js.map +1 -1
- package/esm/tbi.d.ts +3 -9
- package/esm/tbi.js +2 -3
- package/esm/tbi.js.map +1 -1
- package/esm/util.js +1 -6
- package/esm/util.js.map +1 -1
- package/esm/virtualOffset.js.map +1 -1
- package/package.json +14 -13
- package/src/chunk.ts +1 -6
- package/src/csi.ts +6 -7
- package/src/index.ts +3 -5
- package/src/indexFile.ts +4 -4
- package/src/tabixIndexedFile.ts +33 -52
- package/src/tbi.ts +5 -6
- package/src/util.ts +1 -5
package/CHANGELOG.md
CHANGED
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@@ -1,13 +1,22 @@
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1
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-
## [1.5.
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## [1.5.13](https://github.com/GMOD/tabix-js/compare/v1.5.12...v1.5.13) (2024-01-09)
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### Features
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- Another fix for abort signal in getLines
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## [1.5.12](https://github.com/GMOD/tabix-js/compare/v1.5.11...v1.5.12) (2024-01-09)
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- Add missing abort signal to the abortable-promise-cache fetch for tabix chunks
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(#143)
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## [1.5.11](https://github.com/GMOD/tabix-js/compare/v1.5.10...v1.5.11) (2023-07-10)
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### Features
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- explicit buffer import ([#140](https://github.com/GMOD/tabix-js/issues/140))
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([fb80ac8](https://github.com/GMOD/tabix-js/commit/fb80ac813a0d40255556de3ab28dae1940f59c1d))
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* Add explicit buffer import
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## [1.5.10](https://github.com/GMOD/tabix-js/compare/v1.5.9...v1.5.10) (2023-03-30)
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package/dist/chunk.d.ts
CHANGED
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@@ -4,12 +4,6 @@ export default class Chunk {
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maxv: VirtualOffset;
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bin: number;
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_fetchedSize?: number;
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/**
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* @param {VirtualOffset} minv
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* @param {VirtualOffset} maxv
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* @param {number} bin
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* @param {number} [fetchedSize]
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*/
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constructor(minv: VirtualOffset, maxv: VirtualOffset, bin: number, fetchedSize?: undefined);
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toUniqueString(): string;
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toString(): string;
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package/dist/chunk.js
CHANGED
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@@ -2,12 +2,6 @@
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Object.defineProperty(exports, "__esModule", { value: true });
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// little class representing a chunk in the index
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class Chunk {
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/**
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* @param {VirtualOffset} minv
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* @param {VirtualOffset} maxv
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* @param {number} bin
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* @param {number} [fetchedSize]
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*/
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constructor(minv, maxv, bin, fetchedSize = undefined) {
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this.minv = minv;
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this.maxv = maxv;
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this._fetchedSize = fetchedSize;
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}
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toUniqueString() {
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// eslint-disable-next-line @typescript-eslint/restrict-template-expressions
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return `${this.minv}..${this.maxv} (bin ${this.bin}, fetchedSize ${this.fetchedSize()})`;
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}
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toString() {
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package/dist/chunk.js.map
CHANGED
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@@ -1 +1 @@
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{"version":3,"file":"chunk.js","sourceRoot":"","sources":["../src/chunk.ts"],"names":[],"mappings":";;AAEA,iDAAiD;AACjD,MAAqB,KAAK;IAMxB
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{"version":3,"file":"chunk.js","sourceRoot":"","sources":["../src/chunk.ts"],"names":[],"mappings":";;AAEA,iDAAiD;AACjD,MAAqB,KAAK;IAMxB,YACE,IAAmB,EACnB,IAAmB,EACnB,GAAW,EACX,WAAW,GAAG,SAAS;QAEvB,IAAI,CAAC,IAAI,GAAG,IAAI,CAAA;QAChB,IAAI,CAAC,IAAI,GAAG,IAAI,CAAA;QAChB,IAAI,CAAC,GAAG,GAAG,GAAG,CAAA;QACd,IAAI,CAAC,YAAY,GAAG,WAAW,CAAA;IACjC,CAAC;IAED,cAAc;QACZ,4EAA4E;QAC5E,OAAO,GAAG,IAAI,CAAC,IAAI,KAAK,IAAI,CAAC,IAAI,SAC/B,IAAI,CAAC,GACP,iBAAiB,IAAI,CAAC,WAAW,EAAE,GAAG,CAAA;IACxC,CAAC;IAED,QAAQ;QACN,OAAO,IAAI,CAAC,cAAc,EAAE,CAAA;IAC9B,CAAC;IAED,SAAS,CAAC,CAAQ;QAChB,OAAO,CACL,IAAI,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC;YAC3B,IAAI,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC;YAC3B,IAAI,CAAC,GAAG,GAAG,CAAC,CAAC,GAAG,CACjB,CAAA;IACH,CAAC;IAED,WAAW;QACT,IAAI,IAAI,CAAC,YAAY,KAAK,SAAS,EAAE,CAAC;YACpC,OAAO,IAAI,CAAC,YAAY,CAAA;QAC1B,CAAC;QACD,OAAO,IAAI,CAAC,IAAI,CAAC,aAAa,GAAG,CAAC,CAAC,IAAI,EAAE,CAAC,GAAG,IAAI,CAAC,IAAI,CAAC,aAAa,CAAA;IACtE,CAAC;CACF;AA3CD,wBA2CC"}
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package/dist/csi.d.ts
CHANGED
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@@ -9,12 +9,10 @@ export default class CSI extends IndexFile {
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private minShift;
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constructor(args: any);
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lineCount(refName: string, opts?: Options): Promise<number>;
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indexCov():
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indexCov(): void;
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parseAuxData(bytes: Buffer, offset: number): {
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refIdToName: string[];
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refNameToId:
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[key: string]: number;
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};
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refNameToId: Record<string, number>;
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skipLines: number;
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metaChar: string | null;
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columnNumbers: {
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@@ -26,9 +24,7 @@ export default class CSI extends IndexFile {
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coordinateType: string;
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};
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_parseNameBytes(namesBytes: Buffer): {
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refNameToId:
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[key: string]: number;
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};
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refNameToId: Record<string, number>;
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refIdToName: string[];
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};
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_parse(opts?: Options): Promise<{
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@@ -38,9 +34,7 @@ export default class CSI extends IndexFile {
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firstDataLine: VirtualOffset | undefined;
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csiVersion: number;
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indices: {
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binIndex:
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[key: string]: Chunk[];
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};
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binIndex: Record<string, Chunk[]>;
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stats: {
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lineCount: number;
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} | undefined;
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maxBinNumber: number;
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maxRefLength: number;
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refIdToName: string[];
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refNameToId:
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[key: string]: number;
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};
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refNameToId: Record<string, number>;
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skipLines: number;
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metaChar: string | null;
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columnNumbers: {
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@@ -68,9 +60,7 @@ export default class CSI extends IndexFile {
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firstDataLine: VirtualOffset | undefined;
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csiVersion: number;
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indices: {
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binIndex:
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[key: string]: Chunk[];
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};
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binIndex: Record<string, Chunk[]>;
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stats: {
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lineCount: number;
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} | undefined;
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package/dist/csi.js
CHANGED
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@@ -75,9 +75,7 @@ class CSI extends indexFile_1.default {
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});
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}
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indexCov() {
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throw new Error('CSI indexes do not support indexcov');
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});
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throw new Error('CSI indexes do not support indexcov');
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}
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parseAuxData(bytes, offset) {
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const formatFlags = bytes.readInt32LE(offset);
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// fetch and parse the index
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_parse(opts = {}) {
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return __awaiter(this, void 0, void 0, function* () {
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const bytes = yield (0, bgzf_filehandle_1.unzip)(
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const bytes = yield (0, bgzf_filehandle_1.unzip)(yield this.filehandle.readFile(opts));
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// check TBI magic numbers
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if (bytes.readUInt32LE(0) === CSI1_MAGIC) {
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for (const [start, end] of overlappingBins) {
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for (let bin = start; bin <= end; bin++) {
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const
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chunks.push(new chunk_1.default(binChunks[c].minv, binChunks[c].maxv, bin));
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for (const c of ba.binIndex[bin]) {
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chunks.push(new chunk_1.default(c.minv, c.maxv, bin));
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}
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}
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}
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package/dist/csi.js.map
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{"version":3,"file":"csi.js","sourceRoot":"","sources":["../src/csi.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,gDAAuB;AAEvB,2DAA6C;AAE7C,iEAA0D;AAC1D,oDAA2B;AAC3B,iCAAqD;AAErD,4DAAgD;AAEhD,MAAM,UAAU,GAAG,QAAQ,CAAA,CAAC,QAAQ;AACpC,MAAM,UAAU,GAAG,QAAQ,CAAA,CAAC,QAAQ;AAEpC,SAAS,MAAM,CAAC,GAAW,EAAE,IAAY;IACvC,OAAO,GAAG,GAAG,SAAA,CAAC,EAAI,IAAI,CAAA,CAAA;AACxB,CAAC;AACD,SAAS,MAAM,CAAC,GAAW,EAAE,IAAY;IACvC,OAAO,IAAI,CAAC,KAAK,CAAC,GAAG,GAAG,SAAA,CAAC,EAAI,IAAI,CAAA,CAAC,CAAA;AACpC,CAAC;AAED,MAAqB,GAAI,SAAQ,mBAAS;IAIxC,YAAY,IAAS;QACnB,KAAK,CAAC,IAAI,CAAC,CAAA;QACX,IAAI,CAAC,YAAY,GAAG,CAAC,CAAA;QACrB,IAAI,CAAC,KAAK,GAAG,CAAC,CAAA;QACd,IAAI,CAAC,QAAQ,GAAG,CAAC,CAAA;IACnB,CAAC;IACK,SAAS,CAAC,OAAe,EAAE,OAAgB,EAAE;;YACjD,MAAM,SAAS,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;YACxC,IAAI,CAAC,SAAS,EAAE;
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|
+
{"version":3,"file":"csi.js","sourceRoot":"","sources":["../src/csi.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,gDAAuB;AAEvB,2DAA6C;AAE7C,iEAA0D;AAC1D,oDAA2B;AAC3B,iCAAqD;AAErD,4DAAgD;AAEhD,MAAM,UAAU,GAAG,QAAQ,CAAA,CAAC,QAAQ;AACpC,MAAM,UAAU,GAAG,QAAQ,CAAA,CAAC,QAAQ;AAEpC,SAAS,MAAM,CAAC,GAAW,EAAE,IAAY;IACvC,OAAO,GAAG,GAAG,SAAA,CAAC,EAAI,IAAI,CAAA,CAAA;AACxB,CAAC;AACD,SAAS,MAAM,CAAC,GAAW,EAAE,IAAY;IACvC,OAAO,IAAI,CAAC,KAAK,CAAC,GAAG,GAAG,SAAA,CAAC,EAAI,IAAI,CAAA,CAAC,CAAA;AACpC,CAAC;AAED,MAAqB,GAAI,SAAQ,mBAAS;IAIxC,YAAY,IAAS;QACnB,KAAK,CAAC,IAAI,CAAC,CAAA;QACX,IAAI,CAAC,YAAY,GAAG,CAAC,CAAA;QACrB,IAAI,CAAC,KAAK,GAAG,CAAC,CAAA;QACd,IAAI,CAAC,QAAQ,GAAG,CAAC,CAAA;IACnB,CAAC;IACK,SAAS,CAAC,OAAe,EAAE,OAAgB,EAAE;;YACjD,MAAM,SAAS,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;YACxC,IAAI,CAAC,SAAS,EAAE,CAAC;gBACf,OAAO,CAAC,CAAC,CAAA;YACX,CAAC;YACD,MAAM,KAAK,GAAG,SAAS,CAAC,WAAW,CAAC,OAAO,CAAC,CAAA;YAC5C,MAAM,GAAG,GAAG,SAAS,CAAC,OAAO,CAAC,KAAK,CAAC,CAAA;YACpC,IAAI,CAAC,GAAG,EAAE,CAAC;gBACT,OAAO,CAAC,CAAC,CAAA;YACX,CAAC;YACD,MAAM,EAAE,KAAK,EAAE,GAAG,SAAS,CAAC,OAAO,CAAC,KAAK,CAAC,CAAA;YAC1C,IAAI,KAAK,EAAE,CAAC;gBACV,OAAO,KAAK,CAAC,SAAS,CAAA;YACxB,CAAC;YACD,OAAO,CAAC,CAAC,CAAA;QACX,CAAC;KAAA;IACD,QAAQ;QACN,MAAM,IAAI,KAAK,CAAC,qCAAqC,CAAC,CAAA;IACxD,CAAC;IAED,YAAY,CAAC,KAAa,EAAE,MAAc;QACxC,MAAM,WAAW,GAAG,KAAK,CAAC,WAAW,CAAC,MAAM,CAAC,CAAA;QAC7C,MAAM,cAAc,GAClB,WAAW,GAAG,OAAO,CAAC,CAAC,CAAC,sBAAsB,CAAC,CAAC,CAAC,gBAAgB,CAAA;QACnE,MAAM,MAAM,GAAG,EAAE,CAAC,EAAE,SAAS,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,WAAW,GAAG,GAAG,CAAC,CAAA;QACtE,IAAI,CAAC,MAAM,EAAE,CAAC;YACZ,MAAM,IAAI,KAAK,CAAC,qCAAqC,WAAW,EAAE,CAAC,CAAA;QACrE,CAAC;QACD,MAAM,aAAa,GAAG;YACpB,GAAG,EAAE,KAAK,CAAC,WAAW,CAAC,MAAM,GAAG,CAAC,CAAC;YAClC,KAAK,EAAE,KAAK,CAAC,WAAW,CAAC,MAAM,GAAG,CAAC,CAAC;YACpC,GAAG,EAAE,KAAK,CAAC,WAAW,CAAC,MAAM,GAAG,EAAE,CAAC;SACpC,CAAA;QACD,MAAM,SAAS,GAAG,KAAK,CAAC,WAAW,CAAC,MAAM,GAAG,EAAE,CAAC,CAAA;QAChD,MAAM,QAAQ,GAAG,SAAS,CAAC,CAAC,CAAC,MAAM,CAAC,YAAY,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,IAAI,CAAA;QAClE,MAAM,SAAS,GAAG,KAAK,CAAC,WAAW,CAAC,MAAM,GAAG,EAAE,CAAC,CAAA;QAChD,MAAM,iBAAiB,GAAG,KAAK,CAAC,WAAW,CAAC,MAAM,GAAG,EAAE,CAAC,CAAA;QAExD,MAAM,EAAE,WAAW,EAAE,WAAW,EAAE,GAAG,IAAI,CAAC,eAAe,CACvD,KAAK,CAAC,KAAK,CAAC,MAAM,GAAG,EAAE,EAAE,MAAM,GAAG,EAAE,GAAG,iBAAiB,CAAC,CAC1D,CAAA;QAED,OAAO;YACL,WAAW;YACX,WAAW;YACX,SAAS;YACT,QAAQ;YACR,aAAa;YACb,MAAM;YACN,cAAc;SACf,CAAA;IACH,CAAC;IAED,eAAe,CAAC,UAAkB;QAChC,IAAI,SAAS,GAAG,CAAC,CAAA;QACjB,IAAI,aAAa,GAAG,CAAC,CAAA;QACrB,MAAM,WAAW,GAAG,EAAE,CAAA;QACtB,MAAM,WAAW,GAA2B,EAAE,CAAA;QAC9C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,CAAC,MAAM,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC;YAC9C,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,EAAE,CAAC;gBACnB,IAAI,aAAa,GAAG,CAAC,EAAE,CAAC;oBACtB,IAAI,OAAO,GAAG,UAAU,CAAC,QAAQ,CAAC,MAAM,EAAE,aAAa,EAAE,CAAC,CAAC,CAAA;oBAC3D,OAAO,GAAG,IAAI,CAAC,YAAY,CAAC,OAAO,CAAC,CAAA;oBACpC,WAAW,CAAC,SAAS,CAAC,GAAG,OAAO,CAAA;oBAChC,WAAW,CAAC,OAAO,CAAC,GAAG,SAAS,CAAA;gBAClC,CAAC;gBACD,aAAa,GAAG,CAAC,GAAG,CAAC,CAAA;gBACrB,SAAS,IAAI,CAAC,CAAA;YAChB,CAAC;QACH,CAAC;QACD,OAAO,EAAE,WAAW,EAAE,WAAW,EAAE,CAAA;IACrC,CAAC;IAED,4BAA4B;IAEtB,MAAM,CAAC,OAAgB,EAAE;;YAC7B,MAAM,KAAK,GAAG,MAAM,IAAA,uBAAK,EAAC,MAAM,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,CAAA;YAE/D,0BAA0B;YAC1B,IAAI,UAAU,CAAA;YACd,IAAI,KAAK,CAAC,YAAY,CAAC,CAAC,CAAC,KAAK,UAAU,EAAE,CAAC;gBACzC,UAAU,GAAG,CAAC,CAAA;YAChB,CAAC;iBAAM,IAAI,KAAK,CAAC,YAAY,CAAC,CAAC,CAAC,KAAK,UAAU,EAAE,CAAC;gBAChD,UAAU,GAAG,CAAC,CAAA;YAChB,CAAC;iBAAM,CAAC;gBACN,MAAM,IAAI,KAAK,CAAC,gBAAgB,CAAC,CAAA;gBACjC,oDAAoD;YACtD,CAAC;YAED,IAAI,CAAC,QAAQ,GAAG,KAAK,CAAC,WAAW,CAAC,CAAC,CAAC,CAAA;YACpC,IAAI,CAAC,KAAK,GAAG,KAAK,CAAC,WAAW,CAAC,CAAC,CAAC,CAAA;YACjC,IAAI,CAAC,YAAY,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,IAAI,CAAC,KAAK,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAA;YAC3D,MAAM,YAAY,GAAG,SAAA,CAAC,EAAI,CAAC,IAAI,CAAC,QAAQ,GAAG,IAAI,CAAC,KAAK,GAAG,CAAC,CAAC,CAAA,CAAA;YAC1D,MAAM,SAAS,GAAG,KAAK,CAAC,WAAW,CAAC,EAAE,CAAC,CAAA;YACvC,MAAM,GAAG,GACP,SAAS,IAAI,SAAS,IAAI,EAAE;gBAC1B,CAAC,CAAC,IAAI,CAAC,YAAY,CAAC,KAAK,EAAE,EAAE,CAAC;gBAC9B,CAAC,CAAC;oBACE,WAAW,EAAE,EAAE;oBACf,WAAW,EAAE,EAAE;oBACf,QAAQ,EAAE,IAAI;oBACd,aAAa,EAAE,EAAE,GAAG,EAAE,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,GAAG,EAAE,CAAC,EAAE;oBAC3C,cAAc,EAAE,sBAAsB;oBACtC,MAAM,EAAE,SAAS;iBAClB,CAAA;YACP,MAAM,QAAQ,GAAG,KAAK,CAAC,WAAW,CAAC,EAAE,GAAG,SAAS,CAAC,CAAA;YAElD,+CAA+C;YAC/C,IAAI,aAAwC,CAAA;YAC5C,IAAI,UAAU,GAAG,EAAE,GAAG,SAAS,GAAG,CAAC,CAAA;YACnC,MAAM,OAAO,GAAG,IAAI,KAAK,CAAC,QAAQ,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,GAAG,EAAE;gBACnD,oBAAoB;gBACpB,MAAM,QAAQ,GAAG,KAAK,CAAC,WAAW,CAAC,UAAU,CAAC,CAAA;gBAC9C,UAAU,IAAI,CAAC,CAAA;gBACf,MAAM,QAAQ,GAA4B,EAAE,CAAA;gBAC5C,IAAI,KAAK,CAAA,CAAC,iDAAiD;gBAC3D,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC;oBACrC,MAAM,GAAG,GAAG,KAAK,CAAC,YAAY,CAAC,UAAU,CAAC,CAAA;oBAC1C,IAAI,GAAG,GAAG,IAAI,CAAC,YAAY,EAAE,CAAC;wBAC5B,yDAAyD;wBACzD,qCAAqC;wBACrC,KAAK,GAAG,IAAI,CAAC,cAAc,CAAC,KAAK,EAAE,UAAU,GAAG,CAAC,CAAC,CAAA;wBAClD,UAAU,IAAI,CAAC,GAAG,CAAC,GAAG,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|
package/dist/index.d.ts
CHANGED
|
@@ -1,4 +1,3 @@
|
|
|
1
|
-
|
|
2
|
-
|
|
3
|
-
|
|
4
|
-
export { TabixIndexedFile, TBI, CSI };
|
|
1
|
+
export { default as TabixIndexedFile } from './tabixIndexedFile';
|
|
2
|
+
export { default as CSI } from './csi';
|
|
3
|
+
export { default as TBI } from './tbi';
|
package/dist/index.js
CHANGED
|
@@ -3,11 +3,11 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
|
3
3
|
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
4
4
|
};
|
|
5
5
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
6
|
-
exports.
|
|
7
|
-
|
|
8
|
-
exports
|
|
9
|
-
|
|
10
|
-
exports
|
|
11
|
-
|
|
12
|
-
exports
|
|
6
|
+
exports.TBI = exports.CSI = exports.TabixIndexedFile = void 0;
|
|
7
|
+
var tabixIndexedFile_1 = require("./tabixIndexedFile");
|
|
8
|
+
Object.defineProperty(exports, "TabixIndexedFile", { enumerable: true, get: function () { return __importDefault(tabixIndexedFile_1).default; } });
|
|
9
|
+
var csi_1 = require("./csi");
|
|
10
|
+
Object.defineProperty(exports, "CSI", { enumerable: true, get: function () { return __importDefault(csi_1).default; } });
|
|
11
|
+
var tbi_1 = require("./tbi");
|
|
12
|
+
Object.defineProperty(exports, "TBI", { enumerable: true, get: function () { return __importDefault(tbi_1).default; } });
|
|
13
13
|
//# sourceMappingURL=index.js.map
|
package/dist/index.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;;;;AAAA,
|
|
1
|
+
{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;;;;AAAA,uDAAgE;AAAvD,qIAAA,OAAO,OAAoB;AACpC,6BAAsC;AAA7B,2GAAA,OAAO,OAAO;AACvB,6BAAsC;AAA7B,2GAAA,OAAO,OAAO"}
|
package/dist/indexFile.d.ts
CHANGED
|
@@ -6,9 +6,7 @@ export interface Options {
|
|
|
6
6
|
signal?: AbortSignal;
|
|
7
7
|
}
|
|
8
8
|
export interface IndexData {
|
|
9
|
-
refNameToId:
|
|
10
|
-
[key: string]: number;
|
|
11
|
-
};
|
|
9
|
+
refNameToId: Record<string, number>;
|
|
12
10
|
refIdToName: string[];
|
|
13
11
|
metaChar: string | null;
|
|
14
12
|
columnNumbers: {
|
|
@@ -32,9 +30,7 @@ export default abstract class IndexFile {
|
|
|
32
30
|
protected abstract _parse(opts: Options): Promise<IndexData>;
|
|
33
31
|
getMetadata(opts?: Options): Promise<{
|
|
34
32
|
[key: string]: any;
|
|
35
|
-
refNameToId:
|
|
36
|
-
[key: string]: number;
|
|
37
|
-
};
|
|
33
|
+
refNameToId: Record<string, number>;
|
|
38
34
|
refIdToName: string[];
|
|
39
35
|
metaChar: string | null;
|
|
40
36
|
columnNumbers: {
|
package/dist/indexFile.js
CHANGED
|
@@ -27,8 +27,7 @@ class IndexFile {
|
|
|
27
27
|
}
|
|
28
28
|
getMetadata(opts = {}) {
|
|
29
29
|
return __awaiter(this, void 0, void 0, function* () {
|
|
30
|
-
|
|
31
|
-
const _a = yield this.parse(opts), { indices } = _a, rest = __rest(_a, ["indices"]);
|
|
30
|
+
const _a = yield this.parse(opts), { indices: _indices } = _a, rest = __rest(_a, ["indices"]);
|
|
32
31
|
return rest;
|
|
33
32
|
});
|
|
34
33
|
}
|
|
@@ -54,8 +53,10 @@ class IndexFile {
|
|
|
54
53
|
});
|
|
55
54
|
}
|
|
56
55
|
hasRefSeq(seqId, opts = {}) {
|
|
56
|
+
var _a;
|
|
57
57
|
return __awaiter(this, void 0, void 0, function* () {
|
|
58
|
-
|
|
58
|
+
const idx = yield this.parse(opts);
|
|
59
|
+
return !!((_a = idx.indices[seqId]) === null || _a === void 0 ? void 0 : _a.binIndex);
|
|
59
60
|
});
|
|
60
61
|
}
|
|
61
62
|
}
|
package/dist/indexFile.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"indexFile.js","sourceRoot":"","sources":["../src/indexFile.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;AAoBA,MAA8B,SAAS;IAKrC,YAAY,EACV,UAAU,EACV,aAAa,GAAG,CAAC,CAAS,EAAE,EAAE,CAAC,CAAC,GAIjC;QACC,IAAI,CAAC,UAAU,GAAG,UAAU,CAAA;QAC5B,IAAI,CAAC,YAAY,GAAG,aAAa,CAAA;IACnC,CAAC;IAMY,WAAW,CAAC,OAAgB,EAAE;;YACzC,
|
|
1
|
+
{"version":3,"file":"indexFile.js","sourceRoot":"","sources":["../src/indexFile.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;AAoBA,MAA8B,SAAS;IAKrC,YAAY,EACV,UAAU,EACV,aAAa,GAAG,CAAC,CAAS,EAAE,EAAE,CAAC,CAAC,GAIjC;QACC,IAAI,CAAC,UAAU,GAAG,UAAU,CAAA;QAC5B,IAAI,CAAC,YAAY,GAAG,aAAa,CAAA;IACnC,CAAC;IAMY,WAAW,CAAC,OAAgB,EAAE;;YACzC,MAAM,KAAiC,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,EAAvD,EAAE,OAAO,EAAE,QAAQ,OAAoC,EAA/B,IAAI,cAA5B,WAA8B,CAAyB,CAAA;YAC7D,OAAO,IAAI,CAAA;QACb,CAAC;KAAA;IASD,cAAc,CACZ,UAAqC,EACrC,aAA4B;QAE5B,IAAI,UAAU,EAAE,CAAC;YACf,OAAO,UAAU,CAAC,SAAS,CAAC,aAAa,CAAC,GAAG,CAAC;gBAC5C,CAAC,CAAC,aAAa;gBACf,CAAC,CAAC,UAAU,CAAA;QAChB,CAAC;aAAM,CAAC;YACN,OAAO,aAAa,CAAA;QACtB,CAAC;IACH,CAAC;IAEK,KAAK,CAAC,OAAgB,EAAE;;YAC5B,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,CAAC;gBACjB,IAAI,CAAC,MAAM,GAAG,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;oBACxC,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;oBACvB,MAAM,CAAC,CAAA;gBACT,CAAC,CAAC,CAAA;YACJ,CAAC;YACD,OAAO,IAAI,CAAC,MAAM,CAAA;QACpB,CAAC;KAAA;IAEK,SAAS,CAAC,KAAa,EAAE,OAAgB,EAAE;;;YAC/C,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;YAClC,OAAO,CAAC,CAAC,CAAA,MAAA,GAAG,CAAC,OAAO,CAAC,KAAK,CAAC,0CAAE,QAAQ,CAAA,CAAA;;KACtC;CACF;AA3DD,4BA2DC"}
|
|
@@ -48,12 +48,10 @@ export default class TabixIndexedFile {
|
|
|
48
48
|
* @param opts callback called for each line in the region. can also pass a object param containing obj.lineCallback, obj.signal, etc
|
|
49
49
|
* @returns promise that is resolved when the whole read is finished, rejected on error
|
|
50
50
|
*/
|
|
51
|
-
getLines(refName: string,
|
|
51
|
+
getLines(refName: string, s: number | undefined, e: number | undefined, opts: GetLinesOpts | GetLinesCallback): Promise<void>;
|
|
52
52
|
getMetadata(opts?: Options): Promise<{
|
|
53
53
|
[key: string]: any;
|
|
54
|
-
refNameToId:
|
|
55
|
-
[key: string]: number;
|
|
56
|
-
};
|
|
54
|
+
refNameToId: Record<string, number>;
|
|
57
55
|
refIdToName: string[];
|
|
58
56
|
metaChar: string | null;
|
|
59
57
|
columnNumbers: {
|
package/dist/tabixIndexedFile.js
CHANGED
|
@@ -20,7 +20,7 @@ const bgzf_filehandle_1 = require("@gmod/bgzf-filehandle");
|
|
|
20
20
|
const util_1 = require("./util");
|
|
21
21
|
const tbi_1 = __importDefault(require("./tbi"));
|
|
22
22
|
const csi_1 = __importDefault(require("./csi"));
|
|
23
|
-
const decoder = typeof TextDecoder !== 'undefined' ? new TextDecoder('
|
|
23
|
+
const decoder = typeof TextDecoder !== 'undefined' ? new TextDecoder('utf8') : undefined;
|
|
24
24
|
function timeout(time) {
|
|
25
25
|
return new Promise(resolve => setTimeout(resolve, time));
|
|
26
26
|
}
|
|
@@ -96,12 +96,13 @@ class TabixIndexedFile {
|
|
|
96
96
|
* @param opts callback called for each line in the region. can also pass a object param containing obj.lineCallback, obj.signal, etc
|
|
97
97
|
* @returns promise that is resolved when the whole read is finished, rejected on error
|
|
98
98
|
*/
|
|
99
|
-
getLines(refName,
|
|
99
|
+
getLines(refName, s, e, opts) {
|
|
100
|
+
var _a;
|
|
100
101
|
return __awaiter(this, void 0, void 0, function* () {
|
|
101
102
|
let signal;
|
|
102
103
|
let options = {};
|
|
103
104
|
let callback;
|
|
104
|
-
if (
|
|
105
|
+
if (opts === undefined) {
|
|
105
106
|
throw new TypeError('line callback must be provided');
|
|
106
107
|
}
|
|
107
108
|
if (typeof opts === 'function') {
|
|
@@ -110,6 +111,7 @@ class TabixIndexedFile {
|
|
|
110
111
|
else {
|
|
111
112
|
options = opts;
|
|
112
113
|
callback = opts.lineCallback;
|
|
114
|
+
signal = opts.signal;
|
|
113
115
|
}
|
|
114
116
|
if (refName === undefined) {
|
|
115
117
|
throw new TypeError('must provide a reference sequence name');
|
|
@@ -119,12 +121,8 @@ class TabixIndexedFile {
|
|
|
119
121
|
}
|
|
120
122
|
const metadata = yield this.index.getMetadata(options);
|
|
121
123
|
(0, util_1.checkAbortSignal)(signal);
|
|
122
|
-
|
|
123
|
-
|
|
124
|
-
}
|
|
125
|
-
if (!end) {
|
|
126
|
-
end = metadata.maxRefLength;
|
|
127
|
-
}
|
|
124
|
+
const start = s !== null && s !== void 0 ? s : 0;
|
|
125
|
+
const end = e !== null && e !== void 0 ? e : metadata.maxRefLength;
|
|
128
126
|
if (!(start <= end)) {
|
|
129
127
|
throw new TypeError('invalid start and end coordinates. start must be less than or equal to end');
|
|
130
128
|
}
|
|
@@ -135,18 +133,17 @@ class TabixIndexedFile {
|
|
|
135
133
|
(0, util_1.checkAbortSignal)(signal);
|
|
136
134
|
// check the chunks for any that are over the size limit. if
|
|
137
135
|
// any are, don't fetch any of them
|
|
138
|
-
for (
|
|
139
|
-
const size =
|
|
136
|
+
for (const chunk of chunks) {
|
|
137
|
+
const size = chunk.fetchedSize();
|
|
140
138
|
if (size > this.chunkSizeLimit) {
|
|
141
139
|
throw new Error(`Too much data. Chunk size ${size.toLocaleString()} bytes exceeds chunkSizeLimit of ${this.chunkSizeLimit.toLocaleString()}.`);
|
|
142
140
|
}
|
|
143
141
|
}
|
|
144
142
|
// now go through each chunk and parse and filter the lines out of it
|
|
145
143
|
let last = Date.now();
|
|
146
|
-
for (
|
|
144
|
+
for (const c of chunks) {
|
|
147
145
|
let previousStartCoordinate;
|
|
148
|
-
const
|
|
149
|
-
const { buffer, cpositions, dpositions } = yield this.chunkCache.get(c.toString(), c);
|
|
146
|
+
const { buffer, cpositions, dpositions } = yield this.chunkCache.get(c.toString(), c, signal);
|
|
150
147
|
(0, util_1.checkAbortSignal)(signal);
|
|
151
148
|
let blockStart = 0;
|
|
152
149
|
let pos = 0;
|
|
@@ -156,7 +153,7 @@ class TabixIndexedFile {
|
|
|
156
153
|
break;
|
|
157
154
|
}
|
|
158
155
|
const b = buffer.slice(blockStart, n);
|
|
159
|
-
const line = (decoder === null || decoder === void 0 ? void 0 : decoder.decode(b))
|
|
156
|
+
const line = (_a = decoder === null || decoder === void 0 ? void 0 : decoder.decode(b)) !== null && _a !== void 0 ? _a : b.toString();
|
|
160
157
|
if (dpositions) {
|
|
161
158
|
while (blockStart + c.minv.dataPosition >= dpositions[pos++]) { }
|
|
162
159
|
pos--;
|
|
@@ -220,17 +217,8 @@ class TabixIndexedFile {
|
|
|
220
217
|
const maxFetch = ((firstDataLine === null || firstDataLine === void 0 ? void 0 : firstDataLine.blockPosition) || 0) + maxBlockSize;
|
|
221
218
|
// TODO: what if we don't have a firstDataLine, and the header
|
|
222
219
|
// actually takes up more than one block? this case is not covered here
|
|
223
|
-
|
|
224
|
-
(0,
|
|
225
|
-
try {
|
|
226
|
-
bytes = yield (0, bgzf_filehandle_1.unzip)(bytes);
|
|
227
|
-
}
|
|
228
|
-
catch (e) {
|
|
229
|
-
console.error(e);
|
|
230
|
-
throw new Error(
|
|
231
|
-
//@ts-ignore
|
|
232
|
-
`error decompressing block ${e.code} at 0 (length ${maxFetch}) ${e}`);
|
|
233
|
-
}
|
|
220
|
+
const buf = yield this._readRegion(0, maxFetch, opts);
|
|
221
|
+
const bytes = yield (0, bgzf_filehandle_1.unzip)(buf);
|
|
234
222
|
// trim off lines after the last non-meta line
|
|
235
223
|
if (metaChar) {
|
|
236
224
|
// trim backward from the end
|
|
@@ -245,7 +233,7 @@ class TabixIndexedFile {
|
|
|
245
233
|
lastNewline = i;
|
|
246
234
|
}
|
|
247
235
|
}
|
|
248
|
-
|
|
236
|
+
return bytes.slice(0, lastNewline + 1);
|
|
249
237
|
}
|
|
250
238
|
return bytes;
|
|
251
239
|
});
|
|
@@ -286,7 +274,7 @@ class TabixIndexedFile {
|
|
|
286
274
|
checkLine(metadata, regionRefName, regionStart, regionEnd, line) {
|
|
287
275
|
const { columnNumbers, metaChar, coordinateType, format } = metadata;
|
|
288
276
|
// skip meta lines
|
|
289
|
-
if (line.
|
|
277
|
+
if (metaChar && line.startsWith(metaChar)) {
|
|
290
278
|
return { overlaps: false };
|
|
291
279
|
}
|
|
292
280
|
// check ref/start/end using column metadata from index
|
|
@@ -339,14 +327,10 @@ class TabixIndexedFile {
|
|
|
339
327
|
refSeq = line.slice(currentColumnStart, i);
|
|
340
328
|
}
|
|
341
329
|
else if (currentColumnNumber === end) {
|
|
342
|
-
let endCoordinate;
|
|
343
330
|
// this will never match if there is no end column
|
|
344
|
-
|
|
345
|
-
|
|
346
|
-
|
|
347
|
-
else {
|
|
348
|
-
endCoordinate = parseInt(line.slice(currentColumnStart, i), 10);
|
|
349
|
-
}
|
|
331
|
+
const endCoordinate = format === 'VCF'
|
|
332
|
+
? this._getVcfEnd(startCoordinate, refSeq, line.slice(currentColumnStart, i))
|
|
333
|
+
: parseInt(line.slice(currentColumnStart, i), 10);
|
|
350
334
|
if (endCoordinate <= regionStart) {
|
|
351
335
|
return { overlaps: false };
|
|
352
336
|
}
|
|
@@ -362,12 +346,12 @@ class TabixIndexedFile {
|
|
|
362
346
|
}
|
|
363
347
|
_getVcfEnd(startCoordinate, refSeq, info) {
|
|
364
348
|
let endCoordinate = startCoordinate + refSeq.length;
|
|
365
|
-
// ignore TRA features as they specify CHR2 and END
|
|
366
|
-
//
|
|
367
|
-
//
|
|
368
|
-
//
|
|
369
|
-
// at the end of this one
|
|
370
|
-
const isTRA = info.
|
|
349
|
+
// ignore TRA features as they specify CHR2 and END as being on a different
|
|
350
|
+
// chromosome
|
|
351
|
+
//
|
|
352
|
+
// if CHR2 is on the same chromosome, still ignore it because there should
|
|
353
|
+
// be another pairwise feature at the end of this one
|
|
354
|
+
const isTRA = info.includes('SVTYPE=TRA');
|
|
371
355
|
if (info[0] !== '.' && !isTRA) {
|
|
372
356
|
let prevChar = ';';
|
|
373
357
|
for (let j = 0; j < info.length; j += 1) {
|
|
@@ -413,12 +397,7 @@ class TabixIndexedFile {
|
|
|
413
397
|
// fetch the uncompressed data, uncompress carefully a block at a time,
|
|
414
398
|
// and stop when done
|
|
415
399
|
const data = yield this._readRegion(c.minv.blockPosition, c.fetchedSize(), opts);
|
|
416
|
-
|
|
417
|
-
return (0, bgzf_filehandle_1.unzipChunkSlice)(data, c);
|
|
418
|
-
}
|
|
419
|
-
catch (e) {
|
|
420
|
-
throw new Error(`error decompressing c ${c.toString()} ${e}`);
|
|
421
|
-
}
|
|
400
|
+
return (0, bgzf_filehandle_1.unzipChunkSlice)(data, c);
|
|
422
401
|
});
|
|
423
402
|
}
|
|
424
403
|
}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
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+
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package/dist/tbi.d.ts
CHANGED
|
@@ -7,9 +7,7 @@ export default class TabixIndex extends IndexFile {
|
|
|
7
7
|
lineCount(refName: string, opts?: Options): Promise<any>;
|
|
8
8
|
_parse(opts?: Options): Promise<{
|
|
9
9
|
indices: {
|
|
10
|
-
binIndex:
|
|
11
|
-
[key: number]: Chunk[];
|
|
12
|
-
};
|
|
10
|
+
binIndex: Record<number, Chunk[]>;
|
|
13
11
|
linearIndex: any[];
|
|
14
12
|
stats: {
|
|
15
13
|
lineCount: number;
|
|
@@ -28,18 +26,14 @@ export default class TabixIndex extends IndexFile {
|
|
|
28
26
|
coordinateType: string;
|
|
29
27
|
format: string;
|
|
30
28
|
refIdToName: string[];
|
|
31
|
-
refNameToId:
|
|
32
|
-
[key: string]: number;
|
|
33
|
-
};
|
|
29
|
+
refNameToId: Record<string, number>;
|
|
34
30
|
maxBlockSize: number;
|
|
35
31
|
}>;
|
|
36
32
|
parsePseudoBin(bytes: Buffer, offset: number): {
|
|
37
33
|
lineCount: number;
|
|
38
34
|
};
|
|
39
35
|
_parseNameBytes(namesBytes: Buffer): {
|
|
40
|
-
refNameToId:
|
|
41
|
-
[key: string]: number;
|
|
42
|
-
};
|
|
36
|
+
refNameToId: Record<string, number>;
|
|
43
37
|
refIdToName: string[];
|
|
44
38
|
};
|
|
45
39
|
blocksForRange(refName: string, min: number, max: number, opts?: Options): Promise<Chunk[]>;
|
package/dist/tbi.js
CHANGED
|
@@ -231,9 +231,8 @@ class TabixIndex extends indexFile_1.default {
|
|
|
231
231
|
for (const [start, end] of overlappingBins) {
|
|
232
232
|
for (let bin = start; bin <= end; bin++) {
|
|
233
233
|
if (ba.binIndex[bin]) {
|
|
234
|
-
const
|
|
235
|
-
|
|
236
|
-
chunks.push(new chunk_1.default(binChunks[c].minv, binChunks[c].maxv, bin));
|
|
234
|
+
for (const c of ba.binIndex[bin]) {
|
|
235
|
+
chunks.push(new chunk_1.default(c.minv, c.maxv, bin));
|
|
237
236
|
}
|
|
238
237
|
}
|
|
239
238
|
}
|
package/dist/tbi.js.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"tbi.js","sourceRoot":"","sources":["../src/tbi.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,gDAAuB;AAEvB,iEAA0D;AAC1D,oDAA2B;AAC3B,2DAA6C;AAC7C,iCAAuE;AACvE,4DAAgD;AAEhD,MAAM,SAAS,GAAG,QAAQ,CAAA,CAAC,QAAQ;AACnC,MAAM,cAAc,GAAG,EAAE,CAAA;AAEzB;;GAEG;AACH,SAAS,QAAQ,CAAC,GAAW,EAAE,GAAW;IACxC,GAAG,IAAI,CAAC,CAAA,CAAC,8BAA8B;IACvC,GAAG,IAAI,CAAC,CAAA;IACR,OAAO;QACL,CAAC,CAAC,EAAE,CAAC,CAAC;QACN,CAAC,CAAC,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE,CAAC,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,CAAC;QAClC,CAAC,CAAC,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE,CAAC,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,CAAC;QAClC,CAAC,EAAE,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE,EAAE,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,CAAC;QACpC,CAAC,GAAG,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE,GAAG,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,CAAC;QACtC,CAAC,IAAI,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE,IAAI,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,CAAC;KACzC,CAAA;AACH,CAAC;AAED,MAAqB,UAAW,SAAQ,mBAAS;IACzC,SAAS,CAAC,OAAe,EAAE,OAAgB,EAAE;;YACjD,MAAM,SAAS,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;YACxC,IAAI,CAAC,SAAS,EAAE;
|
|
1
|
+
{"version":3,"file":"tbi.js","sourceRoot":"","sources":["../src/tbi.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,gDAAuB;AAEvB,iEAA0D;AAC1D,oDAA2B;AAC3B,2DAA6C;AAC7C,iCAAuE;AACvE,4DAAgD;AAEhD,MAAM,SAAS,GAAG,QAAQ,CAAA,CAAC,QAAQ;AACnC,MAAM,cAAc,GAAG,EAAE,CAAA;AAEzB;;GAEG;AACH,SAAS,QAAQ,CAAC,GAAW,EAAE,GAAW;IACxC,GAAG,IAAI,CAAC,CAAA,CAAC,8BAA8B;IACvC,GAAG,IAAI,CAAC,CAAA;IACR,OAAO;QACL,CAAC,CAAC,EAAE,CAAC,CAAC;QACN,CAAC,CAAC,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE,CAAC,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,CAAC;QAClC,CAAC,CAAC,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE,CAAC,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,CAAC;QAClC,CAAC,EAAE,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE,EAAE,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,CAAC;QACpC,CAAC,GAAG,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE,GAAG,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,CAAC;QACtC,CAAC,IAAI,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,EAAE,IAAI,GAAG,CAAC,GAAG,IAAI,EAAE,CAAC,CAAC;KACzC,CAAA;AACH,CAAC;AAED,MAAqB,UAAW,SAAQ,mBAAS;IACzC,SAAS,CAAC,OAAe,EAAE,OAAgB,EAAE;;YACjD,MAAM,SAAS,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,CAAA;YACxC,IAAI,CAAC,SAAS,EAAE,CAAC;gBACf,OAAO,CAAC,CAAC,CAAA;YACX,CAAC;YACD,MAAM,KAAK,GAAG,SAAS,CAAC,WAAW,CAAC,OAAO,CAAC,CAAA;YAC5C,MAAM,GAAG,GAAG,SAAS,CAAC,OAAO,CAAC,KAAK,CAAC,CAAA;YACpC,IAAI,CAAC,GAAG,EAAE,CAAC;gBACT,OAAO,CAAC,CAAC,CAAA;YACX,CAAC;YACD,MAAM,EAAE,KAAK,EAAE,GAAG,SAAS,CAAC,OAAO,CAAC,KAAK,CAAC,CAAA;YAC1C,IAAI,KAAK,EAAE,CAAC;gBACV,OAAO,KAAK,CAAC,SAAS,CAAA;YACxB,CAAC;YACD,OAAO,CAAC,CAAC,CAAA;QACX,CAAC;KAAA;IAED,4BAA4B;IACtB,MAAM,CAAC,OAAgB,EAAE;;YAC7B,MAAM,GAAG,GAAG,MAAM,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAA;YAChD,MAAM,KAAK,GAAG,MAAM,IAAA,uBAAK,EAAC,GAAG,CAAC,CAAA;YAC9B,IAAA,uBAAgB,EAAC,IAAI,CAAC,MAAM,CAAC,CAAA;YAE7B,0BAA0B;YAC1B,IAAI,KAAK,CAAC,YAAY,CAAC,CAAC,CAAC,KAAK,SAAS,CAAC,aAAa,EAAE,CAAC;gBACtD,MAAM,IAAI,KAAK,CAAC,gBAAgB,CAAC,CAAA;gBACjC,oDAAoD;YACtD,CAAC;YAED,6CAA6C;YAC7C,MAAM,QAAQ,GAAG,KAAK,CAAC,WAAW,CAAC,CAAC,CAAC,CAAA;YACrC,MAAM,WAAW,GAAG,KAAK,CAAC,WAAW,CAAC,CAAC,CAAC,CAAA;YACxC,MAAM,cAAc,GAClB,WAAW,GAAG,OAAO,CAAC,CAAC,CAAC,sBAAsB,CAAC,CAAC,CAAC,gBAAgB,CAAA;YACnE,MAAM,UAAU,GAA2B;gBACzC,CAAC,EAAE,SAAS;gBACZ,CAAC,EAAE,KAAK;gBACR,CAAC,EAAE,KAAK;aACT,CAAA;YACD,MAAM,MAAM,GAAG,UAAU,CAAC,WAAW,GAAG,GAAG,CAAC,CAAA;YAC5C,IAAI,CAAC,MAAM,EAAE,CAAC;gBACZ,MAAM,IAAI,KAAK,CAAC,qCAAqC,WAAW,EAAE,CAAC,CAAA;YACrE,CAAC;YACD,MAAM,aAAa,GAAG;gBACpB,GAAG,EAAE,KAAK,CAAC,WAAW,CAAC,EAAE,CAAC;gBAC1B,KAAK,EAAE,KAAK,CAAC,WAAW,CAAC,EAAE,CAAC;gBAC5B,GAAG,EAAE,KAAK,CAAC,WAAW,CAAC,EAAE,CAAC;aAC3B,CAAA;YACD,MAAM,SAAS,GAAG,KAAK,CAAC,WAAW,CAAC,EAAE,CAAC,CAAA;YACvC,MAAM,KAAK,GAAG,CAAC,CAAA;YACf,MAAM,YAAY,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,KAAK,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAA;YACvD,MAAM,YAAY,GAAG,SAAA,CAAC,EAAI,CAAC,EAAE,GAAG,KAAK,GAAG,CAAC,CAAC,CAAA,CAAA;YAC1C,MAAM,QAAQ,GAAG,SAAS,CAAC,CAAC,CAAC,MAAM,CAAC,YAAY,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,IAAI,CAAA;YAClE,MAAM,SAAS,GAAG,KAAK,CAAC,WAAW,CAAC,EAAE,CAAC,CAAA;YAEvC,2BAA2B;YAC3B,MAAM,iBAAiB,GAAG,KAAK,CAAC,WAAW,CAAC,EAAE,CAAC,CAAA;YAC/C,MAAM,EAAE,WAAW,EAAE,WAAW,EAAE,GAAG,IAAI,CAAC,eAAe,CACvD,KAAK,CAAC,KAAK,CAAC,EAAE,EAAE,EAAE,GAAG,iBAAiB,CAAC,CACxC,CAAA;YAED,+CAA+C;YAC/C,IAAI,UAAU,GAAG,EAAE,GAAG,iBAAiB,CAAA;YACvC,IAAI,aAAwC,CAAA;YAC5C,MAAM,OAAO,GAAG,IAAI,KAAK,CAAC,QAAQ,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,GAAG,EAAE;gBACnD,oBAAoB;gBACpB,MAAM,QAAQ,GAAG,KAAK,CAAC,WAAW,CAAC,UAAU,CAAC,CAAA;gBAC9C,UAAU,IAAI,CAAC,CAAA;gBACf,MAAM,QAAQ,GAA4B,EAAE,CAAA;gBAC5C,IAAI,KAAK,CAAA;gBACT,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC;oBACrC,MAAM,GAAG,GAAG,KAAK,CAAC,YAAY,CAAC,UAAU,CAAC,CAAA;oBAC1C,UAAU,IAAI,CAAC,CAAA;oBACf,IAAI,GAAG,GAAG,YAAY,GAAG,CAAC,EAAE,CAAC;wBAC3B,MAAM,IAAI,KAAK,CACb,4DAA4D,CAC7D,CAAA;oBACH,CAAC;yBAAM,IAAI,GAAG,KAAK,YAAY,GAAG,CAAC,EAAE,CAAC;wBACpC,MAAM,UAAU,GAAG,KAAK,CAAC,WAAW,CAAC,UAAU,CAAC,CAAA;wBAChD,UAAU,IAAI,CAAC,CAAA;wBACf,IAAI,UAAU,KAAK,CAAC,EAAE,CAAC;4BACrB,KAAK,GAAG,IAAI,CAAC,cAAc,CAAC,KAAK,EAAE,UAAU,CAAC,CAAA;wBAChD,CAAC;wBACD,UAAU,IAAI,EAAE,GAAG,UAAU,CAAA;oBAC/B,CAAC;yBAAM,CAAC;wBACN,MAAM,UAAU,GAAG,KAAK,CAAC,WAAW,CAAC,UAAU,CAAC,CAAA;wBAChD,UAAU,IAAI,CAAC,CAAA;wBACf,MAAM,MAAM,GAAG,IAAI,KAAK,CAAC,UAAU,CAAC,CAAA;wBACpC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC;4BACvC,MAAM,CAAC,GAAG,IAAA,yBAAS,EAAC,KAAK,EAAE,UAAU,CAAC,CAAA;4BACtC,MAAM,CAAC,GAAG,IAAA,yBAAS,EAAC,KAAK,EAAE,UAAU,GAAG,CAAC,CAAC,CAAA;4BAC1C,UAAU,IAAI,EAAE,CAAA;4BAChB,aAAa,GAAG,IAAI,CAAC,cAAc,CAAC,aAAa,EAAE,CAAC,CAAC,CAAA;4BACrD,MAAM,CAAC,CAAC,CAAC,GAAG,IAAI,eAAK,CAAC,CAAC,EAAE,CAAC,EAAE,GAAG,CAAC,CAAA;wBAClC,CAAC;wBACD,QAAQ,CAAC,GAAG,CAAC,GAAG,MAAM,CAAA;oBACxB,CAAC;gBACH,CAAC;gBAED,mBAAmB;gBACnB,MAAM,WAAW,GAAG,KAAK,CAAC,WAAW,CAAC,UAAU,CAAC,CAAA;gBACjD,UAAU,IAAI,CAAC,CAAA;gBACf,MAAM,WAAW,GAAG,IAAI,KAAK,CAAC,WAAW,CAAC,CAAA;gBAC1C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,WAAW,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC;oBACxC,WAAW,CAAC,CAAC,CAAC,GAAG,IAAA,yBAAS,EAAC,KAAK,EAAE,UAAU,CAAC,CAAA;oBAC7C,UAAU,IAAI,CAAC,CAAA;oBACf,aAAa,GAAG,IAAI,CAAC,cAAc,CAAC,aAAa,EAAE,WAAW,CAAC,CAAC,CAAC,CAAC,CAAA;gBACpE,CAAC;gBACD,OA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|