@gmod/gbz-base 0.0.1 → 1.0.0

package/dist/sqlite/btree.js

@@ -6,7 +6,10 @@ const LEAF_TABLE = 0x0d;
 function readHeader(page, start) {
     const view = new DataView(page.buffer, page.byteOffset, page.byteLength);
     const type = page[start];
-    if (type !== INTERIOR_INDEX && type !== INTERIOR_TABLE && type !== LEAF_INDEX && type !== LEAF_TABLE) {
+    if (type !== INTERIOR_INDEX &&
+        type !== INTERIOR_TABLE &&
+        type !== LEAF_INDEX &&
+        type !== LEAF_TABLE) {
         throw new Error(`SQLite page has unknown b-tree type ${type}`);
     }
     const interior = type === INTERIOR_INDEX || type === INTERIOR_TABLE;
@@ -26,15 +29,17 @@ function readUint32(page, offset) {
     return view.getUint32(offset);
 }
 export class BTree {
-    pager;
     usable;
+    pager;
     constructor(pager, reservedBytes) {
         this.pager = pager;
         this.usable = pager.pageSize - reservedBytes;
     }
     localPayloadSize(total, isIndex) {
         const usable = this.usable;
-        const maxLocal = isIndex ? Math.floor(((usable - 12) * 64) / 255) - 23 : usable - 35;
+        const maxLocal = isIndex
+            ? Math.floor(((usable - 12) * 64) / 255) - 23
+            : usable - 35;
         if (total <= maxLocal) {
             return total;
         }
@@ -107,7 +112,10 @@ export class BTree {
                     high = mid;
                 }
             }
-            pageNumber = low === header.cellCount ? header.rightChild : readUint32(page, cellOffset(page, header, low));
+            pageNumber =
+                low === header.cellCount
+                    ? header.rightChild
+                    : readUint32(page, cellOffset(page, header, low));
         }
     }
     async *tableScan(root) {
@@ -117,7 +125,10 @@ export class BTree {
                 const offset = cellOffset(page, header, i);
                 const [size, afterSize] = readVarint(page, offset);
                 const [rowid, afterKey] = readVarint(page, afterSize);
-                yield { rowid, values: decodeRecord(await this.payload(page, afterKey, size, false)) };
+                yield {
+                    rowid,
+                    values: decodeRecord(await this.payload(page, afterKey, size, false)),
+                };
             }
         }
         else {
@@ -199,3 +210,4 @@ function compareKey(values, key) {
     }
     return 0;
 }
+//# sourceMappingURL=btree.js.map

package/dist/sqlite/btree.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"btree.js","sourceRoot":"","sources":["../../src/sqlite/btree.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,YAAY,EAAE,UAAU,EAAE,MAAM,aAAa,CAAA;AAKtD,MAAM,cAAc,GAAG,IAAI,CAAA;AAC3B,MAAM,cAAc,GAAG,IAAI,CAAA;AAC3B,MAAM,UAAU,GAAG,IAAI,CAAA;AACvB,MAAM,UAAU,GAAG,IAAI,CAAA;AASvB,SAAS,UAAU,CAAC,IAAgB,EAAE,KAAa;IACjD,MAAM,IAAI,GAAG,IAAI,QAAQ,CAAC,IAAI,CAAC,MAAM,EAAE,IAAI,CAAC,UAAU,EAAE,IAAI,CAAC,UAAU,CAAC,CAAA;IACxE,MAAM,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,CAAA;IACxB,IACE,IAAI,KAAK,cAAc;QACvB,IAAI,KAAK,cAAc;QACvB,IAAI,KAAK,UAAU;QACnB,IAAI,KAAK,UAAU,EACnB,CAAC;QACD,MAAM,IAAI,KAAK,CAAC,uCAAuC,IAAI,EAAE,CAAC,CAAA;IAChE,CAAC;IACD,MAAM,QAAQ,GAAG,IAAI,KAAK,cAAc,IAAI,IAAI,KAAK,cAAc,CAAA;IACnE,OAAO;QACL,IAAI;QACJ,SAAS,EAAE,IAAI,CAAC,SAAS,CAAC,KAAK,GAAG,CAAC,CAAC;QACpC,UAAU,EAAE,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,SAAS,CAAC,KAAK,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QACpD,YAAY,EAAE,KAAK,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;KAC1C,CAAA;AACH,CAAC;AAED,SAAS,UAAU,CAAC,IAAgB,EAAE,MAAkB,EAAE,KAAa;IACrE,MAAM,IAAI,GAAG,IAAI,QAAQ,CAAC,IAAI,CAAC,MAAM,EAAE,IAAI,CAAC,UAAU,EAAE,IAAI,CAAC,UAAU,CAAC,CAAA;IACxE,OAAO,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,YAAY,GAAG,CAAC,GAAG,KAAK,CAAC,CAAA;AACxD,CAAC;AAED,SAAS,UAAU,CAAC,IAAgB,EAAE,MAAc;IAClD,MAAM,IAAI,GAAG,IAAI,QAAQ,CAAC,IAAI,CAAC,MAAM,EAAE,IAAI,CAAC,UAAU,EAAE,IAAI,CAAC,UAAU,CAAC,CAAA;IACxE,OAAO,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,CAAA;AAC/B,CAAC;AAED,MAAM,OAAO,KAAK;IACC,MAAM,CAAQ;IACvB,KAAK,CAAO;IAEpB,YAAY,KAAY,EAAE,aAAqB;QAC7C,IAAI,CAAC,KAAK,GAAG,KAAK,CAAA;QAClB,IAAI,CAAC,MAAM,GAAG,KAAK,CAAC,QAAQ,GAAG,aAAa,CAAA;IAC9C,CAAC;IAEO,gBAAgB,CAAC,KAAa,EAAE,OAAgB;QACtD,MAAM,MAAM,GAAG,IAAI,CAAC,MAAM,CAAA;QAC1B,MAAM,QAAQ,GAAG,OAAO;YACtB,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,GAAG,EAAE,CAAC,GAAG,EAAE,CAAC,GAAG,GAAG,CAAC,GAAG,EAAE;YAC7C,CAAC,CAAC,MAAM,GAAG,EAAE,CAAA;QACf,IAAI,KAAK,IAAI,QAAQ,EAAE,CAAC;YACtB,OAAO,KAAK,CAAA;QACd,CAAC;QACD,MAAM,QAAQ,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,MAAM,GAAG,EAAE,CAAC,GAAG,EAAE,CAAC,GAAG,GAAG,CAAC,GAAG,EAAE,CAAA;QAC5D,MAAM,KAAK,GAAG,QAAQ,GAAG,CAAC,CAAC,KAAK,GAAG,QAAQ,CAAC,GAAG,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAA;QAC5D,OAAO,KAAK,IAAI,QAAQ,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,QAAQ,CAAA;IAC7C,CAAC;IAEO,KAAK,CAAC,OAAO,CACnB,IAAgB,EAChB,MAAc,EACd,KAAa,EACb,OAAgB;QAEhB,MAAM,KAAK,GAAG,IAAI,CAAC,gBAAgB,CAAC,KAAK,EAAE,OAAO,CAAC,CAAA;QACnD,IAAI,KAAK,KAAK,KAAK,EAAE,CAAC;YACpB,OAAO,IAAI,CAAC,QAAQ,CAAC,MAAM,EAAE,MAAM,GAAG,KAAK,CAAC,CAAA;QAC9C,CAAC;QACD,MAAM,MAAM,GAAG,IAAI,UAAU,CAAC,KAAK,CAAC,CAAA;QACpC,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,QAAQ,CAAC,MAAM,EAAE,MAAM,GAAG,KAAK,CAAC,EAAE,CAAC,CAAC,CAAA;QACpD,IAAI,MAAM,GAAG,KAAK,CAAA;QAClB,IAAI,IAAI,GAAG,UAAU,CAAC,IAAI,EAAE,MAAM,GAAG,KAAK,CAAC,CAAA;QAC3C,OAAO,IAAI,KAAK,CAAC,IAAI,MAAM,GAAG,KAAK,EAAE,CAAC;YACpC,MAAM,QAAQ,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;YAC5C,MAAM,KAAK,GAAG,QAAQ,CAAC,QAAQ,CAC7B,CAAC,EACD,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,MAAM,GAAG,CAAC,EAAE,KAAK,GAAG,MAAM,CAAC,CAC9C,CAAA;YACD,MAAM,CAAC,GAAG,CAAC,KAAK,EAAE,MAAM,CAAC,CAAA;YACzB,MAAM,IAAI,KAAK,CAAC,MAAM,CAAA;YACtB,IAAI,GAAG,UAAU,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAA;QAChC,CAAC;QACD,IAAI,MAAM,KAAK,KAAK,EAAE,CAAC;YACrB,MAAM,IAAI,KAAK,CACb,6DAA6D,CAC9D,CAAA;QACH,CAAC;QACD,OAAO,MAAM,CAAA;IACf,CAAC;IAEO,KAAK,CAAC,MAAM,CAAC,UAAkB;QACrC,MAAM,IAAI,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,UAAU,CAAC,CAAA;QAC9C,OAAO,EAAE,IAAI,EAAE,MAAM,EAAE,UAAU,CAAC,IAAI,EAAE,UAAU,KAAK,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAA;IACvE,CAAC;IAED,KAAK,CAAC,UAAU,CACd,IAAY,EACZ,KAAa;QAEb,IAAI,UAAU,GAAG,IAAI,CAAA;QACrB,SAAS,CAAC;YACR,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,GAAG,MAAM,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,CAAA;YACtD,IAAI,MAAM,CAAC,IAAI,KAAK,UAAU,EAAE,CAAC;gBAC/B,IAAI,GAAG,GAAG,CAAC,CAAA;gBACX,IAAI,IAAI,GAAG,MAAM,CAAC,SAAS,CAAA;gBAC3B,OAAO,GAAG,GAAG,IAAI,EAAE,CAAC;oBAClB,MAAM,GAAG,GAAG,CAAC,GAAG,GAAG,IAAI,CAAC,IAAI,CAAC,CAAA;oBAC7B,MAAM,MAAM,GAAG,UAAU,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,CAAC,CAAA;oBAC5C,MAAM,CAAC,IAAI,EAAE,SAAS,CAAC,GAAG,UAAU,CAAC,IAAI,EAAE,MAAM,CAAC,CAAA;oBAClD,MAAM,CAAC,GAAG,EAAE,QAAQ,CAAC,GAAG,UAAU,CAAC,IAAI,EAAE,SAAS,CAAC,CAAA;oBACnD,IAAI,GAAG,KAAK,KAAK,EAAE,CAAC;wBAClB,OAAO,YAAY,CAAC,MAAM,IAAI,CAAC,OAAO,CAAC,IAAI,EAAE,QAAQ,EAAE,IAAI,EAAE,KAAK,CAAC,CAAC,CAAA;oBACtE,CAAC;oBACD,IAAI,GAAG,GAAG,KAAK,EAAE,CAAC;wBAChB,GAAG,GAAG,GAAG,GAAG,CAAC,CAAA;oBACf,CAAC;yBAAM,CAAC;wBACN,IAAI,GAAG,GAAG,CAAA;oBACZ,CAAC;gBACH,CAAC;gBACD,OAAO,SAAS,CAAA;YAClB,CAAC;YACD,IAAI,MAAM,CAAC,IAAI,KAAK,cAAc,EAAE,CAAC;gBACnC,MAAM,IAAI,KAAK,CAAC,4CAA4C,CAAC,CAAA;YAC/D,CAAC;YACD,IAAI,GAAG,GAAG,CAAC,CAAA;YACX,IAAI,IAAI,GAAG,MAAM,CAAC,SAAS,CAAA;YAC3B,OAAO,GAAG,GAAG,IAAI,EAAE,CAAC;gBAClB,MAAM,GAAG,GAAG,CAAC,GAAG,GAAG,IAAI,CAAC,IAAI,CAAC,CAAA;gBAC7B,MAAM,MAAM,GAAG,UAAU,CAAC,IAAI,EAAE,MAAM,EAAE,GAAG,CAAC,CAAA;gBAC5C,MAAM,CAAC,GAAG,CAAC,GAAG,UAAU,CAAC,IAAI,EAAE,MAAM,GAAG,CAAC,CAAC,CAAA;gBAC1C,IAAI,GAAG,GAAG,KAAK,EAAE,CAAC;oBAChB,GAAG,GAAG,GAAG,GAAG,CAAC,CAAA;gBACf,CAAC;qBAAM,CAAC;oBACN,IAAI,GAAG,GAAG,CAAA;gBACZ,CAAC;YACH,CAAC;YACD,UAAU;gBACR,GAAG,KAAK,MAAM,CAAC,SAAS;oBACtB,CAAC,CAAC,MAAM,CAAC,UAAU;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package/dist/sqlite/database.d.ts

@@ -1,6 +1,6 @@
-import type { ByteSource } from '../filehandle.ts';
 import { BTree } from './btree.ts';
 import { Pager } from './pager.ts';
+import type { ByteSource } from '../filehandle.ts';
 import type { PagerOptions } from './pager.ts';
 import type { SqlValue } from './record.ts';
 export interface SqliteObject {

package/dist/sqlite/database.js

@@ -33,8 +33,17 @@ export class SqliteDatabase {
         const objects = new Map();
         for await (const { values } of btree.tableScan(1)) {
             const [type, name, tableName, rootPage, sql] = values;
-            if (typeof type === 'string' && typeof name === 'string' && typeof tableName === 'string' && typeof rootPage === 'number') {
-                objects.set(name, { type, name, tableName, rootPage, sql: typeof sql === 'string' ? sql : '' });
+            if (typeof type === 'string' &&
+                typeof name === 'string' &&
+                typeof tableName === 'string' &&
+                typeof rootPage === 'number') {
+                objects.set(name, {
+                    type,
+                    name,
+                    tableName,
+                    rootPage,
+                    sql: typeof sql === 'string' ? sql : '',
+                });
             }
         }
         return new SqliteDatabase(pager, btree, objects);
@@ -69,3 +78,4 @@ export class SqliteDatabase {
         return this.objects.has(name);
     }
 }
+//# sourceMappingURL=database.js.map

package/dist/sqlite/database.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"database.js","sourceRoot":"","sources":["../../src/sqlite/database.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,MAAM,YAAY,CAAA;AAClC,OAAO,EAAE,KAAK,EAAE,MAAM,YAAY,CAAA;AAclC,MAAM,OAAO,cAAc;IAChB,KAAK,CAAO;IACZ,KAAK,CAAO;IACZ,OAAO,CAA2B;IAE3C,YACE,KAAY,EACZ,KAAY,EACZ,OAAkC;QAElC,IAAI,CAAC,KAAK,GAAG,KAAK,CAAA;QAClB,IAAI,CAAC,KAAK,GAAG,KAAK,CAAA;QAClB,IAAI,CAAC,OAAO,GAAG,OAAO,CAAA;IACxB,CAAC;IAED,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,MAAkB,EAAE,OAAqB,EAAE;QAC3D,MAAM,EAAE,IAAI,EAAE,GAAG,MAAM,MAAM,CAAC,IAAI,EAAE,CAAA;QACpC,MAAM,UAAU,GAAG,MAAM,MAAM,CAAC,IAAI,CAClC,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,SAAS,IAAI,KAAK,EAAE,IAAI,CAAC,EACvC,CAAC,CACF,CAAA;QACD,MAAM,MAAM,GAAG,UAAU,CAAC,QAAQ,CAAC,CAAC,EAAE,GAAG,CAAC,CAAA;QAC1C,MAAM,KAAK,GAAG,IAAI,WAAW,EAAE,CAAC,MAAM,CAAC,MAAM,CAAC,QAAQ,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAA;QAC9D,IAAI,KAAK,KAAK,iBAAiB,EAAE,CAAC;YAChC,MAAM,IAAI,KAAK,CAAC,uBAAuB,CAAC,CAAA;QAC1C,CAAC;QACD,MAAM,IAAI,GAAG,IAAI,QAAQ,CACvB,MAAM,CAAC,MAAM,EACb,MAAM,CAAC,UAAU,EACjB,MAAM,CAAC,UAAU,CAClB,CAAA;QACD,MAAM,WAAW,GAAG,IAAI,CAAC,SAAS,CAAC,EAAE,CAAC,CAAA;QACtC,MAAM,QAAQ,GAAG,WAAW,KAAK,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,WAAW,CAAA;QACxD,MAAM,QAAQ,GAAG,MAAM,CAAC,EAAE,CAAC,IAAI,CAAC,CAAA;QAChC,MAAM,QAAQ,GAAG,IAAI,CAAC,SAAS,CAAC,EAAE,CAAC,CAAA;QACnC,IAAI,QAAQ,KAAK,CAAC,EAAE,CAAC;YACnB,MAAM,IAAI,KAAK,CAAC,wBAAwB,QAAQ,eAAe,CAAC,CAAA;QAClE,CAAC;QACD,MAAM,KAAK,GAAG,IAAI,KAAK,CAAC,MAAM,EAAE,QAAQ,EAAE,IAAI,EAAE,IAAI,CAAC,CAAA;QACrD,KAAK,CAAC,IAAI,CAAC,CAAC,EAAE,UAAU,CAAC,CAAA;QACzB,KAAK,CAAC,OAAO,IAAI,CAAC,CAAA;QAClB,KAAK,CAAC,YAAY,IAAI,UAAU,CAAC,MAAM,CAAA;QACvC,MAAM,KAAK,GAAG,IAAI,KAAK,CAAC,KAAK,EAAE,QAAQ,CAAC,CAAA;QACxC,MAAM,OAAO,GAAG,IAAI,GAAG,EAAwB,CAAA;QAC/C,IAAI,KAAK,EAAE,MAAM,EAAE,MAAM,EAAE,IAAI,KAAK,CAAC,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC;YAClD,MAAM,CAAC,IAAI,EAAE,IAAI,EAAE,SAAS,EAAE,QAAQ,EAAE,GAAG,CAAC,GAAG,MAAM,CAAA;YACrD,IACE,OAAO,IAAI,KAAK,QAAQ;gBACxB,OAAO,IAAI,KAAK,QAAQ;gBACxB,OAAO,SAAS,KAAK,QAAQ;gBAC7B,OAAO,QAAQ,KAAK,QAAQ,EAC5B,CAAC;gBACD,OAAO,CAAC,GAAG,CAAC,IAAI,EAAE;oBAChB,IAAI;oBACJ,IAAI;oBACJ,SAAS;oBACT,QAAQ;oBACR,GAAG,EAAE,OAAO,GAAG,KAAK,QAAQ,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE;iBACxC,CAAC,CAAA;YACJ,CAAC;QACH,CAAC;QACD,OAAO,IAAI,cAAc,CAAC,KAAK,EAAE,KAAK,EAAE,OAAO,CAAC,CAAA;IAClD,CAAC;IAED,QAAQ,CAAC,IAAY;QACnB,MAAM,MAAM,GAAG,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,CAAA;QACrC,IAAI,CAAC,MAAM,EAAE,CAAC;YACZ,MAAM,IAAI,KAAK,CAAC,uCAAuC,IAAI,EAAE,CAAC,CAAA;QAChE,CAAC;QACD,OAAO,MAAM,CAAC,QAAQ,CAAA;IACxB,CAAC;IAED,OAAO,CAAC,SAAiB;QACvB,MAAM,KAAK,GAAG,CAAC,GAAG,IAAI,CAAC,OAAO,CAAC,MAAM,EAAE,CAAC,CAAC,IAAI,CAC3C,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,IAAI,KAAK,OAAO,IAAI,CAAC,CAAC,SAAS,KAAK,SAAS,CACrD,CAAA;QACD,IAAI,CAAC,KAAK,EAAE,CAAC;YACX,MAAM,IAAI,KAAK,CAAC,gBAAgB,SAAS,eAAe,CAAC,CAAA;QAC3D,CAAC;QACD,OAAO,KAAK,CAAC,QAAQ,CAAA;IACvB,CAAC;IAED,OAAO,CAAC,KAAa,EAAE,KAAa;QAClC,OAAO,IAAI,CAAC,KAAK,CAAC,UAAU,CAAC,IAAI,CAAC,QAAQ,CAAC,KAAK,CAAC,EAAE,KAAK,CAAC,CAAA;IAC3D,CAAC;IAED,IAAI,CAAC,KAAa;QAChB,OAAO,IAAI,CAAC,KAAK,CAAC,SAAS,CAAC,IAAI,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAA;IACnD,CAAC;IAED,WAAW,CAAC,KAAa,EAAE,GAAa;QACtC,OAAO,IAAI,CAAC,KAAK,CAAC,WAAW,CAAC,IAAI,CAAC,OAAO,CAAC,KAAK,CAAC,EAAE,GAAG,CAAC,CAAA;IACzD,CAAC;IAED,aAAa,CAAC,KAAa,EAAE,GAAa;QACxC,OAAO,IAAI,CAAC,KAAK,CAAC,aAAa,CAAC,IAAI,CAAC,OAAO,CAAC,KAAK,CAAC,EAAE,GAAG,CAAC,CAAA;IAC3D,CAAC;IAED,GAAG,CAAC,IAAY;QACd,OAAO,IAAI,CAAC,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,CAAA;IAC/B,CAAC;CACF"}

package/dist/sqlite/pager.d.ts

@@ -4,14 +4,14 @@ export interface PagerOptions {
     maxBlocks?: number;
 }
 export declare class Pager {
-    private source;
-    readonly pageSize: number;
-    private fileSize;
     private blocks;
     private readonly blockSize;
     private readonly maxBlocks;
     bytesFetched: number;
     fetches: number;
+    private source;
+    readonly pageSize: number;
+    private fileSize;
     constructor(source: ByteSource, pageSize: number, fileSize: number, opts?: PagerOptions);
     seed(index: number, bytes: Uint8Array): void;
     private block;

package/dist/sqlite/pager.js

@@ -1,12 +1,12 @@
 export class Pager {
-    source;
-    pageSize;
-    fileSize;
     blocks = new Map();
     blockSize;
     maxBlocks;
     bytesFetched = 0;
     fetches = 0;
+    source;
+    pageSize;
+    fileSize;
     constructor(source, pageSize, fileSize, opts = {}) {
         this.source = source;
         this.pageSize = pageSize;
@@ -16,7 +16,8 @@ export class Pager {
         this.maxBlocks = opts.maxBlocks ?? 256;
     }
     seed(index, bytes) {
-        if (bytes.length === Math.min(this.blockSize, this.fileSize - index * this.blockSize)) {
+        if (bytes.length ===
+            Math.min(this.blockSize, this.fileSize - index * this.blockSize)) {
             this.blocks.set(index, Promise.resolve(bytes));
         }
     }
@@ -53,3 +54,4 @@ export class Pager {
         return bytes.subarray(within, within + this.pageSize);
     }
 }
+//# sourceMappingURL=pager.js.map

package/dist/sqlite/pager.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"pager.js","sourceRoot":"","sources":["../../src/sqlite/pager.ts"],"names":[],"mappings":"AAOA,MAAM,OAAO,KAAK;IACR,MAAM,GAAG,IAAI,GAAG,EAA+B,CAAA;IACtC,SAAS,CAAQ;IACjB,SAAS,CAAQ;IAClC,YAAY,GAAG,CAAC,CAAA;IAChB,OAAO,GAAG,CAAC,CAAA;IAEH,MAAM,CAAY;IACjB,QAAQ,CAAQ;IACjB,QAAQ,CAAQ;IAExB,YACE,MAAkB,EAClB,QAAgB,EAChB,QAAgB,EAChB,OAAqB,EAAE;QAEvB,IAAI,CAAC,MAAM,GAAG,MAAM,CAAA;QACpB,IAAI,CAAC,QAAQ,GAAG,QAAQ,CAAA;QACxB,IAAI,CAAC,QAAQ,GAAG,QAAQ,CAAA;QACxB,MAAM,SAAS,GAAG,IAAI,CAAC,SAAS,IAAI,KAAK,CAAA;QACzC,IAAI,CAAC,SAAS,GAAG,IAAI,CAAC,GAAG,CACvB,QAAQ,EACR,IAAI,CAAC,IAAI,CAAC,SAAS,GAAG,QAAQ,CAAC,GAAG,QAAQ,CAC3C,CAAA;QACD,IAAI,CAAC,SAAS,GAAG,IAAI,CAAC,SAAS,IAAI,GAAG,CAAA;IACxC,CAAC;IAED,IAAI,CAAC,KAAa,EAAE,KAAiB;QACnC,IACE,KAAK,CAAC,MAAM;YACZ,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,SAAS,EAAE,IAAI,CAAC,QAAQ,GAAG,KAAK,GAAG,IAAI,CAAC,SAAS,CAAC,EAChE,CAAC;YACD,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,KAAK,EAAE,OAAO,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,CAAA;QAChD,CAAC;IACH,CAAC;IAEO,KAAK,CAAC,KAAa;QACzB,MAAM,MAAM,GAAG,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,CAAA;QACrC,IAAI,MAAM,EAAE,CAAC;YACX,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;YACzB,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,KAAK,EAAE,MAAM,CAAC,CAAA;YAC9B,OAAO,MAAM,CAAA;QACf,CAAC;QACD,MAAM,KAAK,GAAG,KAAK,GAAG,IAAI,CAAC,SAAS,CAAA;QACpC,MAAM,MAAM,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,SAAS,EAAE,IAAI,CAAC,QAAQ,GAAG,KAAK,CAAC,CAAA;QAC9D,MAAM,OAAO,GAAG,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,MAAM,EAAE,KAAK,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,EAAE;YAC3D,IAAI,CAAC,YAAY,IAAI,KAAK,CAAC,MAAM,CAAA;YACjC,OAAO,KAAK,CAAA;QACd,CAAC,CAAC,CAAA;QACF,IAAI,CAAC,OAAO,IAAI,CAAC,CAAA;QACjB,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,KAAK,EAAE,OAAO,CAAC,CAAA;QAC/B,IAAI,IAAI,CAAC,MAAM,CAAC,IAAI,GAAG,IAAI,CAAC,SAAS,EAAE,CAAC;YACtC,MAAM,MAAM,GAAG,IAAI,CAAC,MAAM,CAAC,IAAI,EAAE,CAAC,IAAI,EAAE,CAAC,KAAK,CAAA;YAC9C,IAAI,MAAM,KAAK,SAAS,EAAE,CAAC;gBACzB,IAAI,CAAC,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,CAAA;YAC5B,CAAC;QACH,CAAC;QACD,OAAO,OAAO,CAAA;IAChB,CAAC;IAED,KAAK,CAAC,IAAI,CAAC,UAAkB;QAC3B,MAAM,MAAM,GAAG,CAAC,UAAU,GAAG,CAAC,CAAC,GAAG,IAAI,CAAC,QAAQ,CAAA;QAC/C,IAAI,UAAU,GAAG,CAAC,IAAI,MAAM,GAAG,IAAI,CAAC,QAAQ,GAAG,IAAI,CAAC,QAAQ,EAAE,CAAC;YAC7D,MAAM,IAAI,KAAK,CAAC,eAAe,UAAU,sBAAsB,CAAC,CAAA;QAClE,CAAC;QACD,MAAM,KAAK,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,MAAM,GAAG,IAAI,CAAC,SAAS,CAAC,CAAC,CAAA;QACnE,MAAM,MAAM,GAAG,MAAM,GAAG,IAAI,CAAC,SAAS,CAAA;QACtC,OAAO,KAAK,CAAC,QAAQ,CAAC,MAAM,EAAE,MAAM,GAAG,IAAI,CAAC,QAAQ,CAAC,CAAA;IACvD,CAAC;CACF"}

package/dist/sqlite/record.js

@@ -34,7 +34,8 @@ function readSignedInt(view, offset, width) {
             return view.getInt16(offset) * 4294967296 + view.getUint32(offset + 2);
         default: {
             const big = view.getBigInt64(offset);
-            if (big > BigInt(Number.MAX_SAFE_INTEGER) || big < BigInt(Number.MIN_SAFE_INTEGER)) {
+            if (big > BigInt(Number.MAX_SAFE_INTEGER) ||
+                big < BigInt(Number.MIN_SAFE_INTEGER)) {
                 throw new Error(`SQLite integer ${big} exceeds the safe integer range`);
             }
             return Number(big);
@@ -83,3 +84,4 @@ export function decodeRecord(payload) {
         throw new Error(`SQLite serial type ${type} is reserved`);
     });
 }
+//# sourceMappingURL=record.js.map

package/dist/sqlite/record.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"record.js","sourceRoot":"","sources":["../../src/sqlite/record.ts"],"names":[],"mappings":"AAEA,MAAM,UAAU,UAAU,CACxB,KAAiB,EACjB,MAAc;IAEd,IAAI,KAAK,GAAG,CAAC,CAAA;IACb,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC;QAC3B,MAAM,IAAI,GAAG,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,CAAA;QAC9B,IAAI,IAAI,KAAK,SAAS,EAAE,CAAC;YACvB,MAAM,IAAI,KAAK,CAAC,+CAA+C,CAAC,CAAA;QAClE,CAAC;QACD,KAAK,GAAG,KAAK,GAAG,GAAG,GAAG,CAAC,IAAI,GAAG,IAAI,CAAC,CAAA;QACnC,IAAI,CAAC,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC;YACxB,OAAO,CAAC,KAAK,EAAE,MAAM,GAAG,CAAC,GAAG,CAAC,CAAC,CAAA;QAChC,CAAC;IACH,CAAC;IACD,MAAM,IAAI,GAAG,KAAK,CAAC,MAAM,GAAG,CAAC,CAAC,CAAA;IAC9B,IAAI,IAAI,KAAK,SAAS,EAAE,CAAC;QACvB,MAAM,IAAI,KAAK,CAAC,+CAA+C,CAAC,CAAA;IAClE,CAAC;IACD,KAAK,GAAG,KAAK,GAAG,GAAG,GAAG,IAAI,CAAA;IAC1B,IAAI,CAAC,MAAM,CAAC,aAAa,CAAC,KAAK,CAAC,EAAE,CAAC;QACjC,MAAM,IAAI,KAAK,CAAC,8CAA8C,CAAC,CAAA;IACjE,CAAC;IACD,OAAO,CAAC,KAAK,EAAE,MAAM,GAAG,CAAC,CAAC,CAAA;AAC5B,CAAC;AAED,SAAS,aAAa,CAAC,IAAc,EAAE,MAAc,EAAE,KAAa;IAClE,QAAQ,KAAK,EAAE,CAAC;QACd,KAAK,CAAC;YACJ,OAAO,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,CAAA;QAC7B,KAAK,CAAC;YACJ,OAAO,IAAI,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAA;QAC9B,KAAK,CAAC;YACJ,OAAO,CAAC,IAAI,CAAC,OAAO,CAAC,MAAM,CAAC,IAAI,EAAE,CAAC,GAAG,IAAI,CAAC,SAAS,CAAC,MAAM,GAAG,CAAC,CAAC,CAAA;QAClE,KAAK,CAAC;YACJ,OAAO,IAAI,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAA;QAC9B,KAAK,CAAC;YACJ,OAAO,IAAI,CAAC,QAAQ,CAAC,MAAM,CAAC,GAAG,UAAU,GAAG,IAAI,CAAC,SAAS,CAAC,MAAM,GAAG,CAAC,CAAC,CAAA;QACxE,OAAO,CAAC,CAAC,CAAC;YACR,MAAM,GAAG,GAAG,IAAI,CAAC,WAAW,CAAC,MAAM,CAAC,CAAA;YACpC,IACE,GAAG,GAAG,MAAM,CAAC,MAAM,CAAC,gBAAgB,CAAC;gBACrC,GAAG,GAAG,MAAM,CAAC,MAAM,CAAC,gBAAgB,CAAC,EACrC,CAAC;gBACD,MAAM,IAAI,KAAK,CAAC,kBAAkB,GAAG,iCAAiC,CAAC,CAAA;YACzE,CAAC;YACD,OAAO,MAAM,CAAC,GAAG,CAAC,CAAA;QACpB,CAAC;IACH,CAAC;AACH,CAAC;AAED,MAAM,OAAO,GAAG,IAAI,WAAW,EAAE,CAAA;AAEjC,MAAM,UAAU,YAAY,CAAC,OAAmB;IAC9C,MAAM,CAAC,UAAU,EAAE,SAAS,CAAC,GAAG,UAAU,CAAC,OAAO,EAAE,CAAC,CAAC,CAAA;IACtD,MAAM,KAAK,GAAa,EAAE,CAAA;IAC1B,IAAI,MAAM,GAAG,SAAS,CAAA;IACtB,OAAO,MAAM,GAAG,UAAU,EAAE,CAAC;QAC3B,MAAM,CAAC,IAAI,EAAE,IAAI,CAAC,GAAG,UAAU,CAAC,OAAO,EAAE,MAAM,CAAC,CAAA;QAChD,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAA;QAChB,MAAM,GAAG,IAAI,CAAA;IACf,CAAC;IACD,MAAM,IAAI,GAAG,IAAI,QAAQ,CACvB,OAAO,CAAC,MAAM,EACd,OAAO,CAAC,UAAU,EAClB,OAAO,CAAC,UAAU,CACnB,CAAA;IACD,IAAI,IAAI,GAAG,UAAU,CAAA;IACrB,OAAO,KAAK,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;QACtB,IAAI,IAAI,KAAK,CAAC,EAAE,CAAC;YACf,OAAO,IAAI,CAAA;QACb,CAAC;QACD,IAAI,IAAI,IAAI,CAAC,IAAI,IAAI,IAAI,CAAC,EAAE,CAAC;YAC3B,MAAM,KAAK,GAAG,IAAI,IAAI,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;YACnD,MAAM,KAAK,GAAG,aAAa,CAAC,IAAI,EAAE,IAAI,EAAE,KAAK,CAAC,CAAA;YAC9C,IAAI,IAAI,KAAK,CAAA;YACb,OAAO,KAAK,CAAA;QACd,CAAC;QACD,IAAI,IAAI,KAAK,CAAC,EAAE,CAAC;YACf,MAAM,KAAK,GAAG,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,CAAA;YACnC,IAAI,IAAI,CAAC,CAAA;YACT,OAAO,KAAK,CAAA;QACd,CAAC;QACD,IAAI,IAAI,KAAK,CAAC,EAAE,CAAC;YACf,OAAO,CAAC,CAAA;QACV,CAAC;QACD,IAAI,IAAI,KAAK,CAAC,EAAE,CAAC;YACf,OAAO,CAAC,CAAA;QACV,CAAC;QACD,IAAI,IAAI,IAAI,EAAE,EAAE,CAAC;YACf,MAAM,MAAM,GAAG,CAAC,IAAI,GAAG,EAAE,CAAC,IAAI,CAAC,CAAA;YAC/B,MAAM,KAAK,GAAG,OAAO,CAAC,QAAQ,CAAC,IAAI,EAAE,IAAI,GAAG,MAAM,CAAC,CAAA;YACnD,IAAI,IAAI,MAAM,CAAA;YACd,OAAO,IAAI,GAAG,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,CAAA;QACvD,CAAC;QACD,MAAM,IAAI,KAAK,CAAC,sBAAsB,IAAI,cAAc,CAAC,CAAA;IAC3D,CAAC,CAAC,CAAA;AACJ,CAAC"}

package/dist/subgraph.d.ts

@@ -1,6 +1,6 @@
 import type { GBZBase, PathName } from './db.ts';
-import type { Pos } from './gbwt/record.ts';
 import type { Orientation } from './gbwt/node.ts';
+import type { Pos } from './gbwt/record.ts';
 export type HaplotypeOutput = 'all' | 'distinct' | 'reference-only' | 'none';
 export interface PathPosition {
     seqOffset: number;
@@ -59,7 +59,6 @@ export interface ToJsonOptions {
     names?: 'anonymous' | 'resolved';
 }
 export declare class Subgraph {
-    private db;
     private records;
     private paths;
     private refId;
@@ -75,6 +74,7 @@ export declare class Subgraph {
         identificationSteps: number;
         identificationFetches: number;
     };
+    private db;
     constructor(db: GBZBase);
     get nodeCount(): number;
     get pathCount(): number;

package/dist/subgraph.js

@@ -11,7 +11,8 @@ class SideQueue {
         for (let i = 1; i < this.items.length; i++) {
             const a = this.items[i];
             const b = this.items[best];
-            if (a[0] < b[0] || (a[0] === b[0] && (a[1] < b[1] || (a[1] === b[1] && a[2] < b[2])))) {
+            if (a[0] < b[0] ||
+                (a[0] === b[0] && (a[1] < b[1] || (a[1] === b[1] && a[2] < b[2])))) {
                 best = i;
             }
         }
@@ -26,7 +27,6 @@ function posKey(pos) {
     return `${pos.node}:${pos.offset}`;
 }
 export class Subgraph {
-    db;
     records = new Map();
     paths = [];
     refId;
@@ -36,7 +36,13 @@ export class Subgraph {
     refIndexCache;
     refPrefixCache;
     limit;
-    stats = { orderedAlignments: 0, lcsAlignments: 0, identificationSteps: 0, identificationFetches: 0 };
+    stats = {
+        orderedAlignments: 0,
+        lcsAlignments: 0,
+        identificationSteps: 0,
+        identificationFetches: 0,
+    };
+    db;
     constructor(db) {
         this.db = db;
     }
@@ -48,7 +54,11 @@ export class Subgraph {
     }
     get referenceInterval() {
         return this.refInterval && this.refPath
-            ? { name: this.refPath, start: this.refPath.fragment + this.refInterval[0], end: this.refPath.fragment + this.refInterval[1] }
+            ? {
+                name: this.refPath,
+                start: this.refPath.fragment + this.refInterval[0],
+                end: this.refPath.fragment + this.refInterval[1],
+            }
             : undefined;
     }
     hasNode(id) {
@@ -116,7 +126,12 @@ export class Subgraph {
             const record = this.record(pos.node);
             if (pathOffset + record.sequenceLen > queryOffset) {
                 return {
-                    position: { seqOffset: queryOffset, handle: pos.node, nodeOffset: queryOffset - pathOffset, gbwtOffset: pos.offset },
+                    position: {
+                        seqOffset: queryOffset,
+                        handle: pos.node,
+                        nodeOffset: queryOffset - pathOffset,
+                        gbwtOffset: pos.offset,
+                    },
                     name: path.name,
                     handle: path.handle,
                 };
@@ -264,7 +279,8 @@ export class Subgraph {
                 const positions = [];
                 let len = 0;
                 while (curr) {
-                    if (refPos && curr.node === refPos.handle && curr.offset === refPos.gbwtOffset) {
+                    if (curr.node === refPos?.handle &&
+                        curr.offset === refPos.gbwtOffset) {
                         this.refId = this.paths.length;
                         refOffset = path.length;
                         isRef = true;
@@ -273,10 +289,21 @@ export class Subgraph {
                     positions.push(curr);
                     len += this.record(curr.node).sequenceLen;
                     const step = successors.get(curr.node)?.[curr.offset];
-                    curr = step && step.next.node !== ENDMARKER && successors.has(step.next.node) ? step.next : undefined;
+                    curr =
+                        step &&
+                            step.next.node !== ENDMARKER &&
+                            successors.has(step.next.node)
+                            ? step.next
+                            : undefined;
                 }
                 if (isRef || pathIsCanonical(path)) {
-                    this.paths.push({ path, positions, len, weight: undefined, identity: undefined });
+                    this.paths.push({
+                        path,
+                        positions,
+                        len,
+                        weight: undefined,
+                        identity: undefined,
+                    });
                 }
             });
         }
@@ -292,9 +319,13 @@ export class Subgraph {
             }
             const start = refPos.seqOffset - before;
             this.refInterval = [start, start + info.len];
-            if (reference) {
-                info.identity = { pathHandle: reference.handle, name: reference.name, orientation: 'forward', hapStart: start, hapEnd: start + info.len };
-            }
+            info.identity = {
+                pathHandle: reference.handle,
+                name: reference.name,
+                orientation: 'forward',
+                hapStart: start,
+                hapEnd: start + info.len,
+            };
         }
         if (output === 'distinct') {
             this.distinctPaths();
@@ -387,11 +418,27 @@ export class Subgraph {
             return name;
         };
         const anchorFromSample = (sample, counter, nodeLen) => sample.orientation === 'forward'
-            ? { pathHandle: sample.pathHandle, orientation: 'forward', base: sample.pathOffset - counter }
-            : { pathHandle: sample.pathHandle, orientation: 'reverse', base: sample.pathOffset + counter + nodeLen };
+            ? {
+                pathHandle: sample.pathHandle,
+                orientation: 'forward',
+                base: sample.pathOffset - counter,
+            }
+            : {
+                pathHandle: sample.pathHandle,
+                orientation: 'reverse',
+                base: sample.pathOffset + counter + nodeLen,
+            };
         const anchorFromIdentity = (identity, counter) => identity.orientation === 'forward'
-            ? { pathHandle: identity.pathHandle, orientation: 'forward', base: identity.hapStart - counter }
-            : { pathHandle: identity.pathHandle, orientation: 'reverse', base: identity.hapEnd + counter };
+            ? {
+                pathHandle: identity.pathHandle,
+                orientation: 'forward',
+                base: identity.hapStart - counter,
+            }
+            : {
+                pathHandle: identity.pathHandle,
+                orientation: 'reverse',
+                base: identity.hapEnd + counter,
+            };
         for (let start = 0; start < this.paths.length; start++) {
             const startInfo = this.paths[start];
             if (start === this.refId || startInfo.identity) {
@@ -449,7 +496,8 @@ export class Subgraph {
                     break;
                 }
                 this.stats.identificationSteps += 1;
-                if (counter - chain[chain.length - 1].startBp > 4 * interval + 4 * record.sequenceLen) {
+                if (counter - chain[chain.length - 1].startBp >
+                    4 * interval + 4 * record.sequenceLen) {
                     break;
                 }
                 counter += record.sequenceLen;
@@ -461,8 +509,20 @@ export class Subgraph {
                     const info = this.paths[index];
                     info.identity =
                         anchor.orientation === 'forward'
-                            ? { pathHandle: anchor.pathHandle, name, orientation: 'forward', hapStart: anchor.base + startBp, hapEnd: anchor.base + startBp + info.len }
-                            : { pathHandle: anchor.pathHandle, name, orientation: 'reverse', hapStart: anchor.base - startBp - info.len, hapEnd: anchor.base - startBp };
+                            ? {
+                                pathHandle: anchor.pathHandle,
+                                name,
+                                orientation: 'forward',
+                                hapStart: anchor.base + startBp,
+                                hapEnd: anchor.base + startBp + info.len,
+                            }
+                            : {
+                                pathHandle: anchor.pathHandle,
+                                name,
+                                orientation: 'reverse',
+                                hapStart: anchor.base - startBp - info.len,
+                                hapEnd: anchor.base - startBp,
+                            };
                 }
             }
         }
@@ -595,7 +655,9 @@ export class Subgraph {
         }
         else {
             const mismatch = Math.min(pathMiddle, refMiddle);
-            const mismatchIndel = 4 * mismatch + gapPenalty(pathMiddle - mismatch) + gapPenalty(refMiddle - mismatch);
+            const mismatchIndel = 4 * mismatch +
+                gapPenalty(pathMiddle - mismatch) +
+                gapPenalty(refMiddle - mismatch);
             const insertionDeletion = gapPenalty(pathMiddle) + gapPenalty(refMiddle);
             if (mismatchIndel <= insertionDeletion) {
                 appendEdit(edits, 'M', mismatch);
@@ -622,7 +684,8 @@ export class Subgraph {
         else {
             this.stats.lcsAlignments += 1;
         }
-        const lcs = ordered ?? weightedLcs(info.path, ref, handle => this.record(handle).sequenceLen)[0];
+        const lcs = ordered ??
+            weightedLcs(info.path, ref, handle => this.record(handle).sequenceLen)[0];
         const edits = [];
         let pathOffset = 0;
         let refOffset = 0;
@@ -636,7 +699,9 @@ export class Subgraph {
         return edits;
     }
     alignToRef(pathIndex) {
-        return this.edits(pathIndex)?.map(([op, len]) => `${len}${op}`).join('');
+        return this.edits(pathIndex)
+            ?.map(([op, len]) => `${len}${op}`)
+            .join('');
     }
     alignments() {
         const reference = this.referenceInterval;
@@ -664,12 +729,21 @@ export class Subgraph {
                 last -= 1;
             }
             const identity = info.identity;
-            const strand = info.path.some(handle => isReverse(handle)) && !info.path.some(handle => !isReverse(handle)) ? '-' : '+';
+            const strand = info.path.some(handle => isReverse(handle)) &&
+                !info.path.some(handle => !isReverse(handle))
+                ? '-'
+                : '+';
             result.push({
                 pathHandle: identity?.pathHandle,
                 name: identity?.name,
-                strand: identity ? (identity.orientation === 'forward' ? '+' : '-') : strand,
-                hapStart: identity ? identity.name.fragment + identity.hapStart : undefined,
+                strand: identity
+                    ? identity.orientation === 'forward'
+                        ? '+'
+                        : '-'
+                    : strand,
+                hapStart: identity
+                    ? identity.name.fragment + identity.hapStart
+                    : undefined,
                 hapEnd: identity ? identity.name.fragment + identity.hapEnd : undefined,
                 start: info.positions[0],
                 refStart: reference.start + leading,
@@ -688,7 +762,10 @@ export class Subgraph {
         const handles = this.sortedHandles();
         const nodes = handles
             .filter(handle => !isReverse(handle))
-            .map(handle => ({ id: String(nodeId(handle)), sequence: this.record(handle).sequence }));
+            .map(handle => ({
+            id: String(nodeId(handle)),
+            sequence: this.record(handle).sequence,
+        }));
         const edges = [];
         for (const handle of handles) {
             for (const successor of this.record(handle).successors()) {
@@ -706,7 +783,10 @@ export class Subgraph {
         const contig = this.refPath?.contig ?? 'unknown';
         if (this.refId !== undefined && this.refPath && this.refInterval) {
             const info = this.paths[this.refId];
-            const name = { ...this.refPath, fragment: this.refPath.fragment + this.refInterval[0] };
+            const name = {
+                ...this.refPath,
+                fragment: this.refPath.fragment + this.refInterval[0],
+            };
             paths.push(jsonPath(info, formatPathName(name, this.refPath.fragment + this.refInterval[1]), undefined));
         }
         let haplotype = 1;
@@ -716,7 +796,10 @@ export class Subgraph {
             }
             const resolved = opts.names === 'resolved' ? info.identity : undefined;
             const name = resolved
-                ? formatPathName({ ...resolved.name, fragment: resolved.name.fragment + resolved.hapStart }, resolved.name.fragment + resolved.hapEnd)
+                ? formatPathName({
+                    ...resolved.name,
+                    fragment: resolved.name.fragment + resolved.hapStart,
+                }, resolved.name.fragment + resolved.hapEnd)
                 : formatPathName({ sample: 'unknown', contig, haplotype, fragment: 0 }, info.len);
             paths.push(jsonPath(info, name, cigar ? this.alignToRef(index) : undefined));
             haplotype += 1;
@@ -729,7 +812,10 @@ function jsonPath(info, name, cigar) {
         name,
         ...(info.weight === undefined ? {} : { weight: info.weight }),
         ...(cigar === undefined ? {} : { cigar }),
-        path: info.path.map(handle => ({ id: String(nodeId(handle)), is_reverse: isReverse(handle) })),
+        path: info.path.map(handle => ({
+            id: String(nodeId(handle)),
+            is_reverse: isReverse(handle),
+        })),
     };
 }
 function comparePaths(a, b) {
@@ -748,7 +834,7 @@ function appendEdit(edits, op, len) {
         return;
     }
     const last = edits[edits.length - 1];
-    if (last && last[0] === op) {
+    if (last?.[0] === op) {
         last[1] += len;
     }
     else {
@@ -758,3 +844,4 @@ function appendEdit(edits, op, len) {
 function gapPenalty(len) {
     return len === 0 ? 0 : 6 + (len - 1);
 }
+//# sourceMappingURL=subgraph.js.map

package/dist/subgraph.js.map

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