@gmod/cram 7.0.2 → 7.0.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/cram-bundle.js +1 -1
- package/dist/cramFile/file.d.ts +1 -1
- package/dist/cramFile/file.js +1 -1
- package/dist/cramFile/file.js.map +1 -1
- package/esm/cramFile/file.d.ts +1 -1
- package/esm/cramFile/file.js +1 -1
- package/esm/cramFile/file.js.map +1 -1
- package/package.json +6 -6
- package/src/cramFile/file.ts +1 -1
package/dist/cramFile/file.d.ts
CHANGED
package/dist/cramFile/file.js
CHANGED
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@@ -37,7 +37,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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};
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Object.defineProperty(exports, "__esModule", { value: true });
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const crc32_1 = __importDefault(require("crc/calculators/crc32"));
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-
const quick_lru_1 = __importDefault(require("quick-lru"));
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40
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+
const quick_lru_1 = __importDefault(require("@jbrowse/quick-lru"));
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const errors_ts_1 = require("../errors.js");
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const htscodecs = __importStar(require("../htscodecs/index.js"));
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const io_ts_1 = require("../io.js");
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"file.js","sourceRoot":"","sources":["../../src/cramFile/file.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,kEAAyC;AACzC,
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1
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+
{"version":3,"file":"file.js","sourceRoot":"","sources":["../../src/cramFile/file.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,kEAAyC;AACzC,mEAAyC;AAEzC,4CAAyE;AACzE,iEAAkD;AAClD,oCAA+B;AAC/B,sCAA2C;AAC3C,uCAAkD;AAClD,0CAAmC;AACnC,oEAAgD;AAEhD,2DAK4B;AAC5B,wEAAgE;AAIhE,iFAAiF;AACjF,SAAS,aAAa;IACpB,MAAM,MAAM,GAAG,IAAI,WAAW,CAAC,CAAC,UAAU,CAAC,CAAC,CAAA;IAC5C,MAAM,KAAK,GAAG,IAAI,UAAU,CAAC,MAAM,CAAC,MAAM,CAAC,CAAA;IAE3C,IAAI,KAAK,CAAC,CAAC,CAAC,KAAK,IAAI,EAAE,CAAC;QACtB,OAAO,CAAC,CAAA,CAAC,gBAAgB;IAC3B,CAAC;SAAM,IAAI,KAAK,CAAC,CAAC,CAAC,KAAK,IAAI,EAAE,CAAC;QAC7B,OAAO,CAAC,CAAA,CAAC,aAAa;IACxB,CAAC;SAAM,CAAC;QACN,OAAO,CAAC,CAAA,CAAC,gBAAgB;IAC3B,CAAC;AACH,CAAC;AA4BD,MAAqB,QAAQ;IAY3B,YAAY,IAAkB;QAC5B,IAAI,CAAC,IAAI,GAAG,IAAA,YAAI,EAAC,IAAI,CAAC,GAAG,EAAE,IAAI,CAAC,IAAI,EAAE,IAAI,CAAC,UAAU,CAAC,CAAA;QACtD,IAAI,CAAC,iBAAiB,GAAG,IAAI,CAAA;QAC7B,IAAI,CAAC,8BAA8B,GAAG,IAAI,CAAC,QAAQ,CAAA;QACnD,IAAI,CAAC,OAAO,GAAG;YACb,gBAAgB,EAAE,IAAI,CAAC,gBAAgB;YACvC,SAAS,EAAE,IAAI,CAAC,SAAS,IAAI,KAAK;SACnC,CAAA;QAED,yEAAyE;QACzE,sEAAsE;QACtE,6DAA6D;QAC7D,IAAI,CAAC,YAAY,GAAG,IAAI,mBAAQ,CAAC;YAC/B,OAAO,EAAE,IAAI,CAAC,OAAO,CAAC,SAAS;SAChC,CAAC,CAAA;QACF,IAAI,aAAa,EAAE,GAAG,CAAC,EAAE,CAAC;YACxB,MAAM,IAAI,KAAK,CAAC,mDAAmD,CAAC,CAAA;QACtE,CAAC;IACH,CAAC;IAED,IAAI,CAAC,MAAc,EAAE,QAAgB;QACnC,OAAO,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,QAAQ,CAAC,CAAA;IACzC,CAAC;IAED,WAAW;IACX,KAAK,CAAC,aAAa;QACjB,MAAM,EAAE,SAAS,EAAE,MAAM,EAAE,GAAG,IAAA,sCAAkB,GAAE,CAAA;QAClD,MAAM,SAAS,GAAG,MAAM,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,SAAS,EAAE,CAAC,CAAC,CAAA;QACpD,MAAM,UAAU,GAAG,MAAM,CAAC,SAAS,CAAC,CAAC,KAAK,CAAA;QAC1C,IAAI,UAAU,CAAC,KAAK,KAAK,MAAM,EAAE,CAAC;YAChC,MAAM,IAAI,KAAK,CAAC,8CAA8C,CAAC,CAAA;QACjE,CAAC;aAAM,IAAI,UAAU,CAAC,YAAY,KAAK,CAAC,IAAI,UAAU,CAAC,YAAY,KAAK,CAAC,EAAE,CAAC;YAC1E,MAAM,IAAI,kCAAsB,CAC9B,gBAAgB,UAAU,CAAC,YAAY,gBAAgB,CACxD,CAAA;QACH,CAAC;aAAM,CAAC;YACN,OAAO,UAAU,CAAA;QACnB,CAAC;IACH,CAAC;IAED,UAAU;IACV,KAAK,CAAC,YAAY;QAChB,MAAM,cAAc,GAAG,MAAM,IAAI,CAAC,gBAAgB,CAAC,CAAC,CAAC,CAAA;QACrD,IAAI,CAAC,cAAc,EAAE,CAAC;YACpB,MAAM,IAAI,8BAAkB,CAAC,6BAA6B,CAAC,CAAA;QAC7D,CAAC;QAED,MAAM,UAAU,GAAG,MAAM,cAAc,CAAC,aAAa,EAAE,CAAA;QAEvD,MAAM,OAAO,GAAG,UAAU,CAAC,OAAO,CAAA;QAClC,MAAM,QAAQ,GAAG,IAAI,QAAQ,CAAC,OAAO,CAAC,MAAM,CAAC,CAAA;QAC7C,MAAM,YAAY,GAAG,QAAQ,CAAC,QAAQ,CAAC,CAAC,EAAE,IAAI,CAAC,CAAA;QAC/C,MAAM,SAAS,GAAG,CAAC,CAAA;QACnB,MAAM,OAAO,GAAG,IAAI,WAAW,CAAC,MAAM,CAAC,CAAA;QACvC,MAAM,IAAI,GAAG,OAAO,CAAC,MAAM,CACzB,OAAO,CAAC,QAAQ,CAAC,SAAS,EAAE,SAAS,GAAG,YAAY,CAAC,CACtD,CAAA;QACD,IAAI,CAAC,MAAM,GAAG,IAAI,CAAA;QAClB,OAAO,IAAA,wBAAe,EAAC,IAAI,CAAC,CAAA;IAC9B,CAAC;IAED,KAAK,CAAC,aAAa;QACjB,MAAM,IAAI,CAAC,YAAY,EAAE,CAAA;QACzB,OAAO,IAAI,CAAC,MAAM,CAAA;IACpB,CAAC;IAED,KAAK,CAAC,gBAAgB,CAAC,eAAuB;QAC5C,IAAI,CAAC,IAAI,CAAC,eAAe,EAAE,CAAC;YAC1B,MAAM,EAAE,YAAY,EAAE,GAAG,MAAM,IAAI,CAAC,aAAa,EAAE,CAAA;YACnD,IAAI,CAAC,eAAe,GAAG,IAAA,qCAAiB,EAAC,YAAY,CAAC,CAAA;QACxD,CAAC;QACD,IAAI,QAAQ,GAAG,IAAI,CAAC,eAAe,CAAC,kBAAkB,CAAC,SAAS,CAAA;QAEhE,sDAAsD;QACtD,IAAI,gBAA2C,CAAA;QAC/C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,IAAI,eAAe,EAAE,CAAC,EAAE,EAAE,CAAC;YAC1C,gDAAgD;YAChD,uDAAuD;YACvD,mEAAmE;YACnE,qBAAqB;YACrB,IAAI;YAEJ,gBAAgB,GAAG,IAAI,CAAC,sBAAsB,CAAC,QAAQ,CAAC,CAAA;YACxD,MAAM,aAAa,GAAG,MAAM,gBAAgB,CAAC,SAAS,EAAE,CAAA;YAExD,uEAAuE;YACvE,iEAAiE;YACjE,yDAAyD;YACzD,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC;gBACZ,QAAQ,GAAG,aAAa,CAAC,YAAY,CAAA;gBACrC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,aAAa,CAAC,SAAS,EAAE,CAAC,EAAE,EAAE,CAAC;oBACjD,MAAM,KAAK,GAAG,MAAM,IAAI,CAAC,SAAS,CAAC,QAAQ,CAAC,CAAA;oBAC5C,QAAQ,GAAG,KAAK,CAAC,YAAY,CAAA;gBAC/B,CAAC;YACH,CAAC;iBAAM,CAAC;gBACN,uEAAuE;gBACvE,SAAS;gBACT,QAAQ,IAAI,aAAa,CAAC,KAAK,GAAG,aAAa,CAAC,MAAM,CAAA;YACxD,CAAC;QACH,CAAC;QAED,OAAO,gBAAgB,CAAA;IACzB,CAAC;IAED,KAAK,CAAC,UAAU,CACd,QAAgB,EAChB,MAAc,EACd,aAAqB,EACrB,WAAmB;QAEnB,MAAM,CAAC,GAAG,MAAM,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE,QAAQ,CAAC,CAAA;QAChD,mEAAmE;QACnE,sEAAsE;QACtE,2GAA2G;QAC3G,MAAM,eAAe,GAAG,IAAA,eAAK,EAAC,CAAC,CAAC,KAAK,CAAC,CAAA;QACtC,IAAI,eAAe,KAAK,aAAa,EAAE,CAAC;YACtC,MAAM,IAAI,8BAAkB,CAC1B,mBAAmB,WAAW,sBAAsB,aAAa,4BAA4B,eAAe,EAAE,CAC/G,CAAA;QACH,CAAC;IACH,CAAC;IAED;;;;;OAKG;IACH,KAAK,CAAC,cAAc;QAClB,IAAI,CAAC,IAAI,CAAC,eAAe,EAAE,CAAC;YAC1B,MAAM,EAAE,YAAY,EAAE,GAAG,MAAM,IAAI,CAAC,aAAa,EAAE,CAAA;YACnD,IAAI,CAAC,eAAe,GAAG,IAAA,qCAAiB,EAAC,YAAY,CAAC,CAAA;QACxD,CAAC;QAED,IAAI,cAAc,GAAG,CAAC,CAAA;QACtB,IAAI,QAAQ,GAAG,IAAI,CAAC,eAAe,CAAC,kBAAkB,CAAC,SAAS,CAAA;QAChE,IAAI,CAAC;YACH,uEAAuE;YACvE,OAAO,IAAI,EAAE,CAAC;gBACZ,MAAM,aAAa,GACjB,MAAM,IAAI,CAAC,sBAAsB,CAAC,QAAQ,CAAC,CAAC,SAAS,EAAE,CAAA;gBAEzD,wEAAwE;gBACxE,uEAAuE;gBACvE,0BAA0B;gBAC1B,IAAI,cAAc,KAAK,CAAC,EAAE,CAAC;oBACzB,QAAQ,GAAG,aAAa,CAAC,YAAY,CAAA;oBACrC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,aAAa,CAAC,SAAS,EAAE,CAAC,EAAE,EAAE,CAAC;wBACjD,MAAM,KAAK,GAAG,MAAM,IAAI,CAAC,SAAS,CAAC,QAAQ,CAAC,CAAA;wBAC5C,QAAQ,GAAG,KAAK,CAAC,YAAY,CAAA;oBAC/B,CAAC;gBACH,CAAC;qBAAM,CAAC;oBACN,uEAAuE;oBACvE,SAAS;oBACT,QAAQ,IAAI,aAAa,CAAC,KAAK,GAAG,aAAa,CAAC,MAAM,CAAA;gBACxD,CAAC;gBACD,cAAc,IAAI,CAAC,CAAA;YACrB,CAAC;QACH,CAAC;QAAC,OAAO,CAAC,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package/esm/cramFile/file.d.ts
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package/esm/cramFile/file.js
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import crc32 from 'crc/calculators/crc32';
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import QuickLRU from 'quick-lru';
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import QuickLRU from '@jbrowse/quick-lru';
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import { CramMalformedError, CramUnimplementedError } from "../errors.js";
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import * as htscodecs from "../htscodecs/index.js";
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import { open } from "../io.js";
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package/esm/cramFile/file.js.map
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{"version":3,"file":"file.js","sourceRoot":"","sources":["../../src/cramFile/file.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,uBAAuB,CAAA;AACzC,OAAO,QAAQ,MAAM,
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|
+
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|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@gmod/cram",
|
|
3
|
-
"version": "7.0.
|
|
3
|
+
"version": "7.0.3",
|
|
4
4
|
"description": "read CRAM files with pure Javascript",
|
|
5
5
|
"license": "MIT",
|
|
6
6
|
"repository": "GMOD/cram-js",
|
|
@@ -37,9 +37,9 @@
|
|
|
37
37
|
"build:wasm": "./htscodecs-wasm/build.sh",
|
|
38
38
|
"build:esm": "tsc --outDir esm",
|
|
39
39
|
"build:es5": "tsc --module commonjs --outDir dist",
|
|
40
|
-
"build": "yarn build:wasm && yarn build:esm && yarn build:es5
|
|
40
|
+
"build": "yarn build:wasm && yarn build:esm && yarn build:es5",
|
|
41
41
|
"postbuild": "webpack",
|
|
42
|
-
"postbuild:es5": "echo '{\"type\": \"commonjs\"}' > dist/package.json",
|
|
42
|
+
"postbuild:es5": "cp htscodecs-wasm/htscodecs.cjs.js dist/wasm/htscodecs.js && echo '{\"type\": \"commonjs\"}' > dist/package.json",
|
|
43
43
|
"preversion": "yarn test --run && yarn build",
|
|
44
44
|
"postversion": "git push --follow-tags"
|
|
45
45
|
},
|
|
@@ -50,10 +50,10 @@
|
|
|
50
50
|
"biojs"
|
|
51
51
|
],
|
|
52
52
|
"dependencies": {
|
|
53
|
+
"@jbrowse/quick-lru": "^7.0.0",
|
|
53
54
|
"crc": "^4.3.2",
|
|
54
|
-
"generic-filehandle2": "^2.0.
|
|
55
|
-
"md5": "^2.2.1"
|
|
56
|
-
"quick-lru": "^4.0.1"
|
|
55
|
+
"generic-filehandle2": "^2.0.16",
|
|
56
|
+
"md5": "^2.2.1"
|
|
57
57
|
},
|
|
58
58
|
"devDependencies": {
|
|
59
59
|
"@gmod/indexedfasta": "^5.0.0",
|
package/src/cramFile/file.ts
CHANGED