@gmod/cram 4.0.9 → 5.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (246) hide show
  1. package/README.md +6 -6
  2. package/dist/craiIndex.d.ts +1 -1
  3. package/dist/craiIndex.js +7 -7
  4. package/dist/craiIndex.js.map +1 -1
  5. package/dist/cram-bundle.js +1 -2
  6. package/dist/cramFile/codecs/_base.d.ts +3 -3
  7. package/dist/cramFile/codecs/beta.d.ts +5 -5
  8. package/dist/cramFile/codecs/beta.js +7 -7
  9. package/dist/cramFile/codecs/beta.js.map +1 -1
  10. package/dist/cramFile/codecs/byteArrayLength.d.ts +5 -5
  11. package/dist/cramFile/codecs/byteArrayLength.js +4 -4
  12. package/dist/cramFile/codecs/byteArrayLength.js.map +1 -1
  13. package/dist/cramFile/codecs/byteArrayStop.d.ts +5 -5
  14. package/dist/cramFile/codecs/byteArrayStop.js +7 -7
  15. package/dist/cramFile/codecs/byteArrayStop.js.map +1 -1
  16. package/dist/cramFile/codecs/dataSeriesTypes.d.ts +1 -1
  17. package/dist/cramFile/codecs/external.d.ts +5 -5
  18. package/dist/cramFile/codecs/external.js +12 -11
  19. package/dist/cramFile/codecs/external.js.map +1 -1
  20. package/dist/cramFile/codecs/gamma.d.ts +5 -5
  21. package/dist/cramFile/codecs/gamma.js +8 -8
  22. package/dist/cramFile/codecs/gamma.js.map +1 -1
  23. package/dist/cramFile/codecs/huffman.d.ts +6 -6
  24. package/dist/cramFile/codecs/huffman.js +9 -9
  25. package/dist/cramFile/codecs/huffman.js.map +1 -1
  26. package/dist/cramFile/codecs/index.d.ts +3 -3
  27. package/dist/cramFile/codecs/index.js +16 -16
  28. package/dist/cramFile/codecs/index.js.map +1 -1
  29. package/dist/cramFile/codecs/subexp.d.ts +5 -5
  30. package/dist/cramFile/codecs/subexp.js +9 -9
  31. package/dist/cramFile/codecs/subexp.js.map +1 -1
  32. package/dist/cramFile/container/compressionScheme.d.ts +4 -4
  33. package/dist/cramFile/container/compressionScheme.js +5 -5
  34. package/dist/cramFile/container/compressionScheme.js.map +1 -1
  35. package/dist/cramFile/container/index.d.ts +8 -8
  36. package/dist/cramFile/container/index.js +15 -16
  37. package/dist/cramFile/container/index.js.map +1 -1
  38. package/dist/cramFile/file.d.ts +3 -3
  39. package/dist/cramFile/file.js +29 -38
  40. package/dist/cramFile/file.js.map +1 -1
  41. package/dist/cramFile/index.d.ts +2 -2
  42. package/dist/cramFile/index.js +4 -4
  43. package/dist/cramFile/index.js.map +1 -1
  44. package/dist/cramFile/record.d.ts +2 -2
  45. package/dist/cramFile/record.js +17 -17
  46. package/dist/cramFile/record.js.map +1 -1
  47. package/dist/cramFile/sectionParsers.d.ts +3 -3
  48. package/dist/cramFile/sectionParsers.js +56 -56
  49. package/dist/cramFile/sectionParsers.js.map +1 -1
  50. package/dist/cramFile/slice/decodeRecord.d.ts +6 -6
  51. package/dist/cramFile/slice/decodeRecord.js +17 -17
  52. package/dist/cramFile/slice/decodeRecord.js.map +1 -1
  53. package/dist/cramFile/slice/index.d.ts +5 -5
  54. package/dist/cramFile/slice/index.js +46 -52
  55. package/dist/cramFile/slice/index.js.map +1 -1
  56. package/dist/htscodecs/arith_gen.d.ts +1 -1
  57. package/dist/htscodecs/arith_gen.js +17 -17
  58. package/dist/htscodecs/arith_gen.js.map +1 -1
  59. package/dist/htscodecs/fqzcomp.js +10 -10
  60. package/dist/htscodecs/fqzcomp.js.map +1 -1
  61. package/dist/htscodecs/index.js +6 -6
  62. package/dist/htscodecs/index.js.map +1 -1
  63. package/dist/htscodecs/rans.js +2 -2
  64. package/dist/htscodecs/rans.js.map +1 -1
  65. package/dist/htscodecs/rans4x16.js +7 -7
  66. package/dist/htscodecs/rans4x16.js.map +1 -1
  67. package/dist/htscodecs/tok3.js +9 -9
  68. package/dist/htscodecs/tok3.js.map +1 -1
  69. package/dist/index.d.ts +3 -3
  70. package/dist/index.js +7 -7
  71. package/dist/index.js.map +1 -1
  72. package/dist/indexedCramFile.d.ts +4 -4
  73. package/dist/indexedCramFile.js +5 -5
  74. package/dist/indexedCramFile.js.map +1 -1
  75. package/dist/{io/index.js → io.js} +1 -1
  76. package/dist/io.js.map +1 -0
  77. package/dist/rans/d04.js +28 -28
  78. package/dist/rans/d04.js.map +1 -1
  79. package/dist/rans/d14.js +16 -16
  80. package/dist/rans/d14.js.map +1 -1
  81. package/dist/rans/decoding.js +8 -8
  82. package/dist/rans/decoding.js.map +1 -1
  83. package/dist/rans/frequencies.js +15 -15
  84. package/dist/rans/frequencies.js.map +1 -1
  85. package/dist/rans/index.js +17 -17
  86. package/dist/rans/index.js.map +1 -1
  87. package/dist/seek-bzip/bitreader.d.ts +27 -0
  88. package/dist/seek-bzip/bitreader.js +101 -0
  89. package/dist/seek-bzip/bitreader.js.map +1 -0
  90. package/dist/seek-bzip/crc32.d.ts +0 -0
  91. package/dist/seek-bzip/crc32.js +113 -0
  92. package/dist/seek-bzip/crc32.js.map +1 -0
  93. package/dist/seek-bzip/index.d.ts +9 -0
  94. package/dist/seek-bzip/index.js +585 -0
  95. package/dist/seek-bzip/index.js.map +1 -0
  96. package/dist/seek-bzip/stream.d.ts +1 -0
  97. package/dist/seek-bzip/stream.js +41 -0
  98. package/dist/seek-bzip/stream.js.map +1 -0
  99. package/dist/seek-bzip/toHex.d.ts +1 -0
  100. package/dist/seek-bzip/toHex.js +36 -0
  101. package/dist/seek-bzip/toHex.js.map +1 -0
  102. package/esm/craiIndex.d.ts +1 -1
  103. package/esm/craiIndex.js +3 -3
  104. package/esm/craiIndex.js.map +1 -1
  105. package/esm/cramFile/codecs/_base.d.ts +3 -3
  106. package/esm/cramFile/codecs/beta.d.ts +5 -5
  107. package/esm/cramFile/codecs/beta.js +4 -4
  108. package/esm/cramFile/codecs/beta.js.map +1 -1
  109. package/esm/cramFile/codecs/byteArrayLength.d.ts +5 -5
  110. package/esm/cramFile/codecs/byteArrayLength.js +2 -2
  111. package/esm/cramFile/codecs/byteArrayLength.js.map +1 -1
  112. package/esm/cramFile/codecs/byteArrayStop.d.ts +5 -5
  113. package/esm/cramFile/codecs/byteArrayStop.js +4 -4
  114. package/esm/cramFile/codecs/byteArrayStop.js.map +1 -1
  115. package/esm/cramFile/codecs/dataSeriesTypes.d.ts +1 -1
  116. package/esm/cramFile/codecs/external.d.ts +5 -5
  117. package/esm/cramFile/codecs/external.js +8 -7
  118. package/esm/cramFile/codecs/external.js.map +1 -1
  119. package/esm/cramFile/codecs/gamma.d.ts +5 -5
  120. package/esm/cramFile/codecs/gamma.js +4 -4
  121. package/esm/cramFile/codecs/gamma.js.map +1 -1
  122. package/esm/cramFile/codecs/huffman.d.ts +6 -6
  123. package/esm/cramFile/codecs/huffman.js +5 -5
  124. package/esm/cramFile/codecs/huffman.js.map +1 -1
  125. package/esm/cramFile/codecs/index.d.ts +3 -3
  126. package/esm/cramFile/codecs/index.js +8 -8
  127. package/esm/cramFile/codecs/index.js.map +1 -1
  128. package/esm/cramFile/codecs/subexp.d.ts +5 -5
  129. package/esm/cramFile/codecs/subexp.js +4 -4
  130. package/esm/cramFile/codecs/subexp.js.map +1 -1
  131. package/esm/cramFile/container/compressionScheme.d.ts +4 -4
  132. package/esm/cramFile/container/compressionScheme.js +2 -2
  133. package/esm/cramFile/container/compressionScheme.js.map +1 -1
  134. package/esm/cramFile/container/index.d.ts +8 -8
  135. package/esm/cramFile/container/index.js +5 -6
  136. package/esm/cramFile/container/index.js.map +1 -1
  137. package/esm/cramFile/file.d.ts +3 -3
  138. package/esm/cramFile/file.js +12 -21
  139. package/esm/cramFile/file.js.map +1 -1
  140. package/esm/cramFile/index.d.ts +2 -2
  141. package/esm/cramFile/index.js +2 -2
  142. package/esm/cramFile/index.js.map +1 -1
  143. package/esm/cramFile/record.d.ts +2 -2
  144. package/esm/cramFile/record.js +1 -1
  145. package/esm/cramFile/record.js.map +1 -1
  146. package/esm/cramFile/sectionParsers.d.ts +3 -3
  147. package/esm/cramFile/sectionParsers.js +1 -1
  148. package/esm/cramFile/sectionParsers.js.map +1 -1
  149. package/esm/cramFile/slice/decodeRecord.d.ts +6 -6
  150. package/esm/cramFile/slice/decodeRecord.js +3 -3
  151. package/esm/cramFile/slice/decodeRecord.js.map +1 -1
  152. package/esm/cramFile/slice/index.d.ts +5 -5
  153. package/esm/cramFile/slice/index.js +18 -24
  154. package/esm/cramFile/slice/index.js.map +1 -1
  155. package/esm/htscodecs/arith_gen.d.ts +1 -1
  156. package/esm/htscodecs/arith_gen.js +5 -5
  157. package/esm/htscodecs/arith_gen.js.map +1 -1
  158. package/esm/htscodecs/fqzcomp.js +3 -3
  159. package/esm/htscodecs/fqzcomp.js.map +1 -1
  160. package/esm/htscodecs/index.js +5 -5
  161. package/esm/htscodecs/index.js.map +1 -1
  162. package/esm/htscodecs/rans.js +1 -1
  163. package/esm/htscodecs/rans.js.map +1 -1
  164. package/esm/htscodecs/rans4x16.js +1 -1
  165. package/esm/htscodecs/rans4x16.js.map +1 -1
  166. package/esm/htscodecs/tok3.js +4 -4
  167. package/esm/htscodecs/tok3.js.map +1 -1
  168. package/esm/index.d.ts +3 -3
  169. package/esm/index.js +3 -3
  170. package/esm/index.js.map +1 -1
  171. package/esm/indexedCramFile.d.ts +4 -4
  172. package/esm/indexedCramFile.js +2 -2
  173. package/esm/indexedCramFile.js.map +1 -1
  174. package/esm/{io/index.js → io.js} +1 -1
  175. package/esm/io.js.map +1 -0
  176. package/esm/rans/d04.js +3 -3
  177. package/esm/rans/d04.js.map +1 -1
  178. package/esm/rans/d14.js +2 -2
  179. package/esm/rans/d14.js.map +1 -1
  180. package/esm/rans/decoding.js +2 -2
  181. package/esm/rans/decoding.js.map +1 -1
  182. package/esm/rans/frequencies.js +3 -3
  183. package/esm/rans/frequencies.js.map +1 -1
  184. package/esm/rans/index.js +5 -5
  185. package/esm/rans/index.js.map +1 -1
  186. package/esm/seek-bzip/bitreader.d.ts +27 -0
  187. package/esm/seek-bzip/bitreader.js +98 -0
  188. package/esm/seek-bzip/bitreader.js.map +1 -0
  189. package/esm/seek-bzip/crc32.d.ts +0 -0
  190. package/esm/seek-bzip/crc32.js +113 -0
  191. package/esm/seek-bzip/crc32.js.map +1 -0
  192. package/esm/seek-bzip/index.d.ts +9 -0
  193. package/esm/seek-bzip/index.js +579 -0
  194. package/esm/seek-bzip/index.js.map +1 -0
  195. package/esm/seek-bzip/stream.d.ts +1 -0
  196. package/esm/seek-bzip/stream.js +41 -0
  197. package/esm/seek-bzip/stream.js.map +1 -0
  198. package/esm/seek-bzip/toHex.d.ts +1 -0
  199. package/esm/seek-bzip/toHex.js +33 -0
  200. package/esm/seek-bzip/toHex.js.map +1 -0
  201. package/package.json +15 -10
  202. package/src/craiIndex.ts +4 -4
  203. package/src/cramFile/codecs/_base.ts +3 -3
  204. package/src/cramFile/codecs/beta.ts +8 -8
  205. package/src/cramFile/codecs/byteArrayLength.ts +6 -6
  206. package/src/cramFile/codecs/byteArrayStop.ts +8 -8
  207. package/src/cramFile/codecs/dataSeriesTypes.ts +1 -1
  208. package/src/cramFile/codecs/external.ts +15 -12
  209. package/src/cramFile/codecs/gamma.ts +8 -8
  210. package/src/cramFile/codecs/huffman.ts +8 -8
  211. package/src/cramFile/codecs/index.ts +11 -11
  212. package/src/cramFile/codecs/subexp.ts +8 -8
  213. package/src/cramFile/container/compressionScheme.ts +6 -6
  214. package/src/cramFile/container/index.ts +6 -7
  215. package/src/cramFile/file.ts +13 -24
  216. package/src/cramFile/index.ts +2 -2
  217. package/src/cramFile/record.ts +3 -3
  218. package/src/cramFile/sectionParsers.ts +4 -4
  219. package/src/cramFile/slice/decodeRecord.ts +8 -8
  220. package/src/cramFile/slice/index.ts +23 -29
  221. package/src/htscodecs/arith_gen.ts +6 -6
  222. package/src/htscodecs/fqzcomp.ts +3 -3
  223. package/src/htscodecs/index.ts +5 -5
  224. package/src/htscodecs/rans.ts +1 -1
  225. package/src/htscodecs/rans4x16.ts +1 -1
  226. package/src/htscodecs/tok3.ts +4 -4
  227. package/src/index.ts +3 -3
  228. package/src/indexedCramFile.ts +5 -5
  229. package/src/rans/d04.ts +3 -3
  230. package/src/rans/d14.ts +2 -2
  231. package/src/rans/decoding.ts +2 -2
  232. package/src/rans/frequencies.ts +3 -3
  233. package/src/rans/index.ts +5 -5
  234. package/src/seek-bzip/README.md +6 -0
  235. package/src/seek-bzip/bitreader.ts +113 -0
  236. package/src/seek-bzip/crc32.ts +116 -0
  237. package/src/seek-bzip/index.ts +615 -0
  238. package/src/seek-bzip/stream.ts +42 -0
  239. package/src/seek-bzip/toHex.ts +33 -0
  240. package/dist/cram-bundle.js.LICENSE.txt +0 -12
  241. package/dist/io/index.js.map +0 -1
  242. package/esm/io/index.js.map +0 -1
  243. package/src/cramFile/declare.d.ts +0 -1
  244. /package/dist/{io/index.d.ts → io.d.ts} +0 -0
  245. /package/esm/{io/index.d.ts → io.d.ts} +0 -0
  246. /package/src/{io/index.ts → io.ts} +0 -0
package/esm/io/index.js.map DELETED
@@ -1 +0,0 @@
1
- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/io/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,UAAU,EAAE,MAAM,qBAAqB,CAAA;AAI3D,SAAS,IAAI,CACX,QAAiB,EACjB,SAAkB,EAClB,eAAmC;IAEnC,IAAI,eAAe,EAAE,CAAC;QACpB,OAAO,eAAe,CAAA;IACxB,CAAC;IACD,IAAI,QAAQ,EAAE,CAAC;QACb,OAAO,IAAI,UAAU,CAAC,QAAQ,CAAC,CAAA;IACjC,CAAC;IACD,IAAI,SAAS,EAAE,CAAC;QACd,OAAO,IAAI,SAAS,CAAC,SAAS,CAAC,CAAA;IACjC,CAAC;IACD,MAAM,IAAI,KAAK,CAAC,mDAAmD,CAAC,CAAA;AACtE,CAAC;AAED,OAAO,EAAE,IAAI,EAAE,CAAA;AAEf,OAAO,EAAE,SAAS,EAAE,UAAU,EAAE,MAAM,qBAAqB,CAAA"}
package/src/cramFile/declare.d.ts DELETED
@@ -1 +0,0 @@
1
- declare module 'seek-bzip'
/package/dist/{io/index.d.ts → io.d.ts} RENAMED
File without changes
/package/esm/{io/index.d.ts → io.d.ts} RENAMED
File without changes
/package/src/{io/index.ts → io.ts} RENAMED
File without changes