npm - @gmod/cram - Versions diffs - 4.0.10 → 5.0.0 - Mend

@gmod/cram 4.0.10 → 5.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (210) hide show

package/README.md +6 -6
package/dist/craiIndex.d.ts +1 -1
package/dist/craiIndex.js +7 -7
package/dist/craiIndex.js.map +1 -1
package/dist/cram-bundle.js +1 -2
package/dist/cramFile/codecs/_base.d.ts +3 -3
package/dist/cramFile/codecs/beta.d.ts +5 -5
package/dist/cramFile/codecs/beta.js +7 -7
package/dist/cramFile/codecs/beta.js.map +1 -1
package/dist/cramFile/codecs/byteArrayLength.d.ts +5 -5
package/dist/cramFile/codecs/byteArrayLength.js +4 -4
package/dist/cramFile/codecs/byteArrayLength.js.map +1 -1
package/dist/cramFile/codecs/byteArrayStop.d.ts +5 -5
package/dist/cramFile/codecs/byteArrayStop.js +7 -7
package/dist/cramFile/codecs/byteArrayStop.js.map +1 -1
package/dist/cramFile/codecs/dataSeriesTypes.d.ts +1 -1
package/dist/cramFile/codecs/external.d.ts +5 -5
package/dist/cramFile/codecs/external.js +12 -11
package/dist/cramFile/codecs/external.js.map +1 -1
package/dist/cramFile/codecs/gamma.d.ts +5 -5
package/dist/cramFile/codecs/gamma.js +8 -8
package/dist/cramFile/codecs/gamma.js.map +1 -1
package/dist/cramFile/codecs/huffman.d.ts +6 -6
package/dist/cramFile/codecs/huffman.js +9 -9
package/dist/cramFile/codecs/huffman.js.map +1 -1
package/dist/cramFile/codecs/index.d.ts +3 -3
package/dist/cramFile/codecs/index.js +16 -16
package/dist/cramFile/codecs/index.js.map +1 -1
package/dist/cramFile/codecs/subexp.d.ts +5 -5
package/dist/cramFile/codecs/subexp.js +9 -9
package/dist/cramFile/codecs/subexp.js.map +1 -1
package/dist/cramFile/container/compressionScheme.d.ts +4 -4
package/dist/cramFile/container/compressionScheme.js +5 -5
package/dist/cramFile/container/compressionScheme.js.map +1 -1
package/dist/cramFile/container/index.d.ts +8 -8
package/dist/cramFile/container/index.js +15 -16
package/dist/cramFile/container/index.js.map +1 -1
package/dist/cramFile/file.d.ts +3 -3
package/dist/cramFile/file.js +29 -35
package/dist/cramFile/file.js.map +1 -1
package/dist/cramFile/index.d.ts +2 -2
package/dist/cramFile/index.js +4 -4
package/dist/cramFile/index.js.map +1 -1
package/dist/cramFile/record.d.ts +2 -2
package/dist/cramFile/record.js +17 -17
package/dist/cramFile/record.js.map +1 -1
package/dist/cramFile/sectionParsers.d.ts +3 -3
package/dist/cramFile/sectionParsers.js +56 -56
package/dist/cramFile/sectionParsers.js.map +1 -1
package/dist/cramFile/slice/decodeRecord.d.ts +6 -6
package/dist/cramFile/slice/decodeRecord.js +17 -17
package/dist/cramFile/slice/decodeRecord.js.map +1 -1
package/dist/cramFile/slice/index.d.ts +5 -5
package/dist/cramFile/slice/index.js +46 -52
package/dist/cramFile/slice/index.js.map +1 -1
package/dist/htscodecs/arith_gen.d.ts +1 -1
package/dist/htscodecs/arith_gen.js +17 -17
package/dist/htscodecs/arith_gen.js.map +1 -1
package/dist/htscodecs/fqzcomp.js +10 -10
package/dist/htscodecs/fqzcomp.js.map +1 -1
package/dist/htscodecs/index.js +6 -6
package/dist/htscodecs/index.js.map +1 -1
package/dist/htscodecs/rans.js +2 -2
package/dist/htscodecs/rans.js.map +1 -1
package/dist/htscodecs/rans4x16.js +7 -7
package/dist/htscodecs/rans4x16.js.map +1 -1
package/dist/htscodecs/tok3.js +9 -9
package/dist/htscodecs/tok3.js.map +1 -1
package/dist/index.d.ts +3 -3
package/dist/index.js +7 -7
package/dist/index.js.map +1 -1
package/dist/indexedCramFile.d.ts +4 -4
package/dist/indexedCramFile.js +5 -5
package/dist/indexedCramFile.js.map +1 -1
package/dist/{io/index.js → io.js} +1 -1
package/dist/io.js.map +1 -0
package/dist/rans/d04.js +28 -28
package/dist/rans/d04.js.map +1 -1
package/dist/rans/d14.js +16 -16
package/dist/rans/d14.js.map +1 -1
package/dist/rans/decoding.js +8 -8
package/dist/rans/decoding.js.map +1 -1
package/dist/rans/frequencies.js +15 -15
package/dist/rans/frequencies.js.map +1 -1
package/dist/rans/index.js +17 -17
package/dist/rans/index.js.map +1 -1
package/esm/craiIndex.d.ts +1 -1
package/esm/craiIndex.js +3 -3
package/esm/craiIndex.js.map +1 -1
package/esm/cramFile/codecs/_base.d.ts +3 -3
package/esm/cramFile/codecs/beta.d.ts +5 -5
package/esm/cramFile/codecs/beta.js +4 -4
package/esm/cramFile/codecs/beta.js.map +1 -1
package/esm/cramFile/codecs/byteArrayLength.d.ts +5 -5
package/esm/cramFile/codecs/byteArrayLength.js +2 -2
package/esm/cramFile/codecs/byteArrayLength.js.map +1 -1
package/esm/cramFile/codecs/byteArrayStop.d.ts +5 -5
package/esm/cramFile/codecs/byteArrayStop.js +4 -4
package/esm/cramFile/codecs/byteArrayStop.js.map +1 -1
package/esm/cramFile/codecs/dataSeriesTypes.d.ts +1 -1
package/esm/cramFile/codecs/external.d.ts +5 -5
package/esm/cramFile/codecs/external.js +8 -7
package/esm/cramFile/codecs/external.js.map +1 -1
package/esm/cramFile/codecs/gamma.d.ts +5 -5
package/esm/cramFile/codecs/gamma.js +4 -4
package/esm/cramFile/codecs/gamma.js.map +1 -1
package/esm/cramFile/codecs/huffman.d.ts +6 -6
package/esm/cramFile/codecs/huffman.js +5 -5
package/esm/cramFile/codecs/huffman.js.map +1 -1
package/esm/cramFile/codecs/index.d.ts +3 -3
package/esm/cramFile/codecs/index.js +8 -8
package/esm/cramFile/codecs/index.js.map +1 -1
package/esm/cramFile/codecs/subexp.d.ts +5 -5
package/esm/cramFile/codecs/subexp.js +4 -4
package/esm/cramFile/codecs/subexp.js.map +1 -1
package/esm/cramFile/container/compressionScheme.d.ts +4 -4
package/esm/cramFile/container/compressionScheme.js +2 -2
package/esm/cramFile/container/compressionScheme.js.map +1 -1
package/esm/cramFile/container/index.d.ts +8 -8
package/esm/cramFile/container/index.js +5 -6
package/esm/cramFile/container/index.js.map +1 -1
package/esm/cramFile/file.d.ts +3 -3
package/esm/cramFile/file.js +11 -17
package/esm/cramFile/file.js.map +1 -1
package/esm/cramFile/index.d.ts +2 -2
package/esm/cramFile/index.js +2 -2
package/esm/cramFile/index.js.map +1 -1
package/esm/cramFile/record.d.ts +2 -2
package/esm/cramFile/record.js +1 -1
package/esm/cramFile/record.js.map +1 -1
package/esm/cramFile/sectionParsers.d.ts +3 -3
package/esm/cramFile/sectionParsers.js +1 -1
package/esm/cramFile/sectionParsers.js.map +1 -1
package/esm/cramFile/slice/decodeRecord.d.ts +6 -6
package/esm/cramFile/slice/decodeRecord.js +3 -3
package/esm/cramFile/slice/decodeRecord.js.map +1 -1
package/esm/cramFile/slice/index.d.ts +5 -5
package/esm/cramFile/slice/index.js +18 -24
package/esm/cramFile/slice/index.js.map +1 -1
package/esm/htscodecs/arith_gen.d.ts +1 -1
package/esm/htscodecs/arith_gen.js +4 -4
package/esm/htscodecs/arith_gen.js.map +1 -1
package/esm/htscodecs/fqzcomp.js +3 -3
package/esm/htscodecs/fqzcomp.js.map +1 -1
package/esm/htscodecs/index.js +5 -5
package/esm/htscodecs/index.js.map +1 -1
package/esm/htscodecs/rans.js +1 -1
package/esm/htscodecs/rans.js.map +1 -1
package/esm/htscodecs/rans4x16.js +1 -1
package/esm/htscodecs/rans4x16.js.map +1 -1
package/esm/htscodecs/tok3.js +4 -4
package/esm/htscodecs/tok3.js.map +1 -1
package/esm/index.d.ts +3 -3
package/esm/index.js +3 -3
package/esm/index.js.map +1 -1
package/esm/indexedCramFile.d.ts +4 -4
package/esm/indexedCramFile.js +2 -2
package/esm/indexedCramFile.js.map +1 -1
package/esm/{io/index.js → io.js} +1 -1
package/esm/io.js.map +1 -0
package/esm/rans/d04.js +3 -3
package/esm/rans/d04.js.map +1 -1
package/esm/rans/d14.js +2 -2
package/esm/rans/d14.js.map +1 -1
package/esm/rans/decoding.js +2 -2
package/esm/rans/decoding.js.map +1 -1
package/esm/rans/frequencies.js +3 -3
package/esm/rans/frequencies.js.map +1 -1
package/esm/rans/index.js +5 -5
package/esm/rans/index.js.map +1 -1
package/package.json +15 -9
package/src/craiIndex.ts +4 -4
package/src/cramFile/codecs/_base.ts +3 -3
package/src/cramFile/codecs/beta.ts +8 -8
package/src/cramFile/codecs/byteArrayLength.ts +6 -6
package/src/cramFile/codecs/byteArrayStop.ts +8 -8
package/src/cramFile/codecs/dataSeriesTypes.ts +1 -1
package/src/cramFile/codecs/external.ts +15 -12
package/src/cramFile/codecs/gamma.ts +8 -8
package/src/cramFile/codecs/huffman.ts +8 -8
package/src/cramFile/codecs/index.ts +11 -11
package/src/cramFile/codecs/subexp.ts +8 -8
package/src/cramFile/container/compressionScheme.ts +6 -6
package/src/cramFile/container/index.ts +6 -7
package/src/cramFile/file.ts +12 -18
package/src/cramFile/index.ts +2 -2
package/src/cramFile/record.ts +3 -3
package/src/cramFile/sectionParsers.ts +4 -4
package/src/cramFile/slice/decodeRecord.ts +8 -8
package/src/cramFile/slice/index.ts +23 -29
package/src/htscodecs/arith_gen.ts +5 -5
package/src/htscodecs/fqzcomp.ts +3 -3
package/src/htscodecs/index.ts +5 -5
package/src/htscodecs/rans.ts +1 -1
package/src/htscodecs/rans4x16.ts +1 -1
package/src/htscodecs/tok3.ts +4 -4
package/src/index.ts +3 -3
package/src/indexedCramFile.ts +5 -5
package/src/rans/d04.ts +3 -3
package/src/rans/d14.ts +2 -2
package/src/rans/decoding.ts +2 -2
package/src/rans/frequencies.ts +3 -3
package/src/rans/index.ts +5 -5
package/dist/cram-bundle.js.LICENSE.txt +0 -12
package/dist/io/index.js.map +0 -1
package/esm/io/index.js.map +0 -1
package/src/cramFile/declare.d.ts +0 -1
/package/dist/{io/index.d.ts → io.d.ts} +0 -0
/package/esm/{io/index.d.ts → io.d.ts} +0 -0
/package/src/{io/index.ts → io.ts} +0 -0

package/esm/cramFile/slice/decodeRecord.js.map CHANGED Viewed

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package/esm/cramFile/slice/index.d.ts CHANGED Viewed

@@ -1,7 +1,7 @@
-import CramContainer from '../container';
-import { CramFileBlock } from '../file';
-import CramRecord from '../record';
-import { MappedSliceHeader, UnmappedSliceHeader } from '../sectionParsers';
+import CramContainer from '../container/index.ts';
+import { CramFileBlock } from '../file.ts';
+import CramRecord from '../record.ts';
+import { MappedSliceHeader, UnmappedSliceHeader } from '../sectionParsers.ts';
 export type SliceHeader = CramFileBlock & {
     parsedContent: MappedSliceHeader | UnmappedSliceHeader;
 };
@@ -23,7 +23,7 @@ export default class CramSlice {
             _endPosition: number;
             _size: number;
         };
-        compressionMethod: import("../sectionParsers").CompressionMethod;
+        compressionMethod: import("../sectionParsers.ts").CompressionMethod;
         contentType: "FILE_HEADER" | "COMPRESSION_HEADER" | "MAPPED_SLICE_HEADER" | "UNMAPPED_SLICE_HEADER" | "EXTERNAL_DATA" | "CORE_DATA";
         contentId: number;
         compressedSize: number;

package/esm/cramFile/slice/index.js CHANGED Viewed

@@ -1,18 +1,15 @@
-import { CramArgumentError, CramMalformedError } from '../../errors';
-import { CramBufferOverrunError } from '../codecs/getBits';
-import Constants from '../constants';
-import decodeRecord from './decodeRecord';
-import CramRecord from '../record';
-import { getSectionParsers, isMappedSliceHeader, } from '../sectionParsers';
-import { parseItem, sequenceMD5, tinyMemoize } from '../util';
+import { CramArgumentError, CramMalformedError } from "../../errors.js";
+import { CramBufferOverrunError } from "../codecs/getBits.js";
+import Constants from "../constants.js";
+import decodeRecord from "./decodeRecord.js";
+import CramRecord from "../record.js";
+import { getSectionParsers, isMappedSliceHeader, } from "../sectionParsers.js";
+import { parseItem, sequenceMD5, tinyMemoize } from "../util.js";
 /**
- * @private
- * Try to estimate the template length from a bunch of interrelated multi-segment reads.
- * @param {Array[CramRecord]} allRecords
- * @param {number} currentRecordNumber
- * @param {CramRecord} thisRecord
+ * Try to estimate the template length from a bunch of interrelated
+ * multi-segment reads.
  */
-function calculateMultiSegmentMatedTemplateLength(allRecords, currentRecordNumber, thisRecord) {
+function calculateMultiSegmentMatedTemplateLength(allRecords, _currentRecordNumber, thisRecord) {
     function getAllMatedRecords(startRecord) {
         const records = [startRecord];
         if (startRecord.mateRecordNumber !== undefined &&
@@ -39,15 +36,13 @@ function calculateMultiSegmentMatedTemplateLength(allRecords, currentRecordNumbe
     }
 }
 /**
- * @private
- * Attempt to calculate the `templateLength` for a pair of intra-slice paired reads.
- * Ported from htslib. Algorithm is imperfect.
- * @param {CramRecord} thisRecord
- * @param {CramRecord} mateRecord
+ * Attempt to calculate the `templateLength` for a pair of intra-slice paired
+ * reads. Ported from htslib. Algorithm is imperfect.
  */
 function calculateIntraSliceMatePairTemplateLength(thisRecord, mateRecord) {
-    // this just estimates the template length by using the simple (non-gapped) end coordinate of each
-    // read, because gapping in the alignment doesn't mean the template is longer or shorter
+    // this just estimates the template length by using the simple (non-gapped)
+    // end coordinate of each read, because gapping in the alignment doesn't mean
+    // the template is longer or shorter
     const start = Math.min(thisRecord.alignmentStart, mateRecord.alignmentStart);
     const end = Math.max(thisRecord.alignmentStart + thisRecord.readLength - 1, mateRecord.alignmentStart + mateRecord.readLength - 1);
     const lengthEstimate = end - start + 1;
@@ -55,10 +50,9 @@ function calculateIntraSliceMatePairTemplateLength(thisRecord, mateRecord) {
     mateRecord.templateLength = lengthEstimate;
 }
 /**
- * @private establishes a mate-pair relationship between two records in the
- * same slice. CRAM compresses mate-pair relationships between records in the
- * same slice down into just one record having the index in the slice of its
- * mate
+ * establishes a mate-pair relationship between two records in the same slice.
+ * CRAM compresses mate-pair relationships between records in the same slice
+ * down into just one record having the index in the slice of its mate
  */
 function associateIntraSliceMate(allRecords, currentRecordNumber, thisRecord, mateRecord) {
     const complicatedMultiSegment = !!(mateRecord.mate ||

package/esm/cramFile/slice/index.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/esm/htscodecs/arith_gen.d.ts CHANGED Viewed

@@ -1,4 +1,4 @@
-import IOStream from './iostream';
+import IOStream from './iostream.ts';
 export default class RangeCoderGen {
     stream: IOStream;
     decode(src: Uint8Array): Uint8Array<any>;

package/esm/htscodecs/arith_gen.js CHANGED Viewed

@@ -32,10 +32,10 @@
  * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
  * OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
  */
-import { decode } from '../seek-bzip';
-import RangeCoder from './arith_sh';
-import ByteModel from './byte_model';
-import IOStream from './iostream';
+import { decode } from "../seek-bzip/index.js";
+import RangeCoder from "./arith_sh.js";
+import ByteModel from "./byte_model.js";
+import IOStream from "./iostream.js";
 const ARITH_ORDER = 1;
 const ARITH_EXT = 4;
 const ARITH_STRIPE = 8;

package/esm/htscodecs/arith_gen.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/esm/htscodecs/fqzcomp.js CHANGED Viewed

@@ -32,9 +32,9 @@
  * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
  * OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
  */
-import RangeCoder from './arith_sh';
-import ByteModel from './byte_model';
-import IOStream from './iostream';
+import RangeCoder from "./arith_sh.js";
+import ByteModel from "./byte_model.js";
+import IOStream from "./iostream.js";
 // ----------------------------------------------------------------------
 // Main arithmetic entry function: decodes a compressed src and
 // returns the uncompressed buffer.

package/esm/htscodecs/fqzcomp.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/esm/htscodecs/index.js CHANGED Viewed

@@ -36,11 +36,11 @@
 // the CRAM 3.1 codecs.
 // This JavaScript file is not part of the reference implementation
 // and is simply and interface to get a consistent interface for cram-js.
-import arith from './arith_gen';
-import * as fqzcomp from './fqzcomp';
-import * as r4x8 from './rans';
-import * as r4x16 from './rans4x16';
-import * as tok3 from './tok3';
+import arith from "./arith_gen.js";
+import * as fqzcomp from "./fqzcomp.js";
+import * as r4x8 from "./rans.js";
+import * as r4x16 from "./rans4x16.js";
+import * as tok3 from "./tok3.js";
 export function r4x8_uncompress(inputBuffer) {
     return r4x8.decode(inputBuffer);
 }

package/esm/htscodecs/index.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/htscodecs/index.ts"],"names":[],"mappings":"AAAA,cAAc;AACd,EAAE;AACF;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GA+BG;AAEH,oEAAoE;AACpE,uBAAuB;AAEvB,mEAAmE;AACnE,yEAAyE;AAEzE,OAAO,KAAK,MAAM,~~aAAa~~,CAAA;~~AAC/B~~,OAAO,KAAK,OAAO,MAAM,~~WAAW~~,CAAA;~~AACpC~~,OAAO,KAAK,IAAI,MAAM,~~QAAQ~~,CAAA;~~AAC9B~~,OAAO,KAAK,KAAK,MAAM,~~YAAY~~,CAAA;~~AACnC~~,OAAO,KAAK,IAAI,MAAM,~~QAAQ~~,CAAA;~~AAE9B~~,MAAM,UAAU,eAAe,CAAC,WAAuB;IACrD,OAAO,IAAI,CAAC,MAAM,CAAC,WAAW,CAAC,CAAA;AACjC,CAAC;AAED,MAAM,UAAU,gBAAgB,CAAC,WAAuB;IACtD,OAAO,KAAK,CAAC,MAAM,CAAC,WAAW,CAAC,CAAA;AAClC,CAAC;AAED,MAAM,UAAU,gBAAgB,CAAC,WAAuB;IACtD,gCAAgC;IAChC,4DAA4D;IAC5D,OAAO,IAAI,KAAK,EAAE,CAAC,MAAM,CAAC,WAAW,CAAC,CAAA;AACxC,CAAC;AAED,MAAM,UAAU,kBAAkB,CAAC,WAAuB;IACxD,MAAM,MAAM,GAAG,EAAE,CAAA;IACjB,OAAO,OAAO,CAAC,MAAM,CAAC,WAAW,EAAE,MAAM,CAAC,CAAA;AAC5C,CAAC;AAED,MAAM,UAAU,eAAe,CAAC,WAAuB;IACrD,2CAA2C;IAC3C,MAAM,GAAG,GAAG,IAAI,CAAC,MAAM,CAAC,WAAW,EAAE,CAAC,EAAE,IAAI,CAAC,CAAA;IAC7C,OAAO,UAAU,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;AAC7E,CAAC"}
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package/esm/htscodecs/rans.js CHANGED Viewed

@@ -32,7 +32,7 @@
  * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
  * OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
  */
-import IOStream from './iostream';
+import IOStream from "./iostream.js";
 // ----------------------------------------------------------------------
 // rANS primitives itself
 //

package/esm/htscodecs/rans.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/esm/htscodecs/rans4x16.js CHANGED Viewed

@@ -32,7 +32,7 @@
  * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
  * OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
  */
-import IOStream from './iostream';
+import IOStream from "./iostream.js";
 // ----------------------------------------------------------------------
 // rANS primitives itself
 //

package/esm/htscodecs/rans4x16.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/esm/htscodecs/tok3.js CHANGED Viewed

@@ -37,10 +37,10 @@
 // This is a reference implementation designed to match the
 // written specification as closely as possible.  It is *NOT*
 // an efficient implementation, but see comments below.
-import { concatUint8Array } from '../util';
-import arith_gen from './arith_gen';
-import IOStream from './iostream';
-import * as rans from './rans4x16';
+import { concatUint8Array } from "../util.js";
+import arith_gen from "./arith_gen.js";
+import IOStream from "./iostream.js";
+import * as rans from "./rans4x16.js";
 const arith = new arith_gen();
 const TOK_TYPE = 0;
 const TOK_STRING = 1;

package/esm/htscodecs/tok3.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/esm/index.d.ts CHANGED Viewed

@@ -1,3 +1,3 @@
-export { CramRecord, default as CramFile } from './cramFile';
-export { default as CraiIndex } from './craiIndex';
-export { default as IndexedCramFile } from './indexedCramFile';
+export { CramRecord, default as CramFile } from './cramFile/index.ts';
+export { default as CraiIndex } from './craiIndex.ts';
+export { default as IndexedCramFile } from './indexedCramFile.ts';

package/esm/index.js CHANGED Viewed

@@ -1,4 +1,4 @@
-export { CramRecord, default as CramFile } from './cramFile';
-export { default as CraiIndex } from './craiIndex';
-export { default as IndexedCramFile } from './indexedCramFile';
+export { CramRecord, default as CramFile } from "./cramFile/index.js";
+export { default as CraiIndex } from "./craiIndex.js";
+export { default as IndexedCramFile } from "./indexedCramFile.js";
 //# sourceMappingURL=index.js.map

package/esm/index.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,UAAU,EAAE,OAAO,IAAI,QAAQ,EAAE,MAAM,qBAAqB,CAAA;AACrE,OAAO,EAAE,OAAO,IAAI,SAAS,EAAE,MAAM,gBAAgB,CAAA;AACrD,OAAO,EAAE,OAAO,IAAI,eAAe,EAAE,MAAM,sBAAsB,CAAA"}

package/esm/indexedCramFile.d.ts CHANGED Viewed

@@ -1,7 +1,7 @@
-import { Slice } from './craiIndex';
-import CramFile from './cramFile';
-import { SeqFetch } from './cramFile/file';
-import CramRecord from './cramFile/record';
+import { Slice } from './craiIndex.ts';
+import { SeqFetch } from './cramFile/file.ts';
+import CramFile from './cramFile/index.ts';
+import CramRecord from './cramFile/record.ts';
 import type { GenericFilehandle } from 'generic-filehandle2';
 export interface CramFileSource {
     cramFilehandle?: GenericFilehandle;