@gmod/cram 3.0.5 → 3.0.6

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (9) hide show
  1. package/dist/cram-bundle.js +1 -1
  2. package/dist/cramFile/codecs/byteArrayStop.d.ts +2 -2
  3. package/dist/cramFile/slice/decodeRecord.js +3 -1
  4. package/dist/cramFile/slice/decodeRecord.js.map +1 -1
  5. package/esm/cramFile/codecs/byteArrayStop.d.ts +2 -2
  6. package/esm/cramFile/slice/decodeRecord.js +3 -1
  7. package/esm/cramFile/slice/decodeRecord.js.map +1 -1
  8. package/package.json +1 -1
  9. package/src/cramFile/slice/decodeRecord.ts +4 -1
package/dist/cramFile/codecs/byteArrayStop.d.ts CHANGED
@@ -3,6 +3,6 @@ import CramSlice from '../slice';
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  import { CramFileBlock } from '../file';
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  import { ByteArrayStopCramEncoding } from '../encoding';
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  export default class ByteArrayStopCodec extends CramCodec<'byteArray', ByteArrayStopCramEncoding['parameters']> {
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- decode(slice: CramSlice, coreDataBlock: CramFileBlock, blocksByContentId: Record<number, CramFileBlock>, cursors: Cursors): Buffer;
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- _decodeByteArray(contentBlock: CramFileBlock, cursor: Cursor): Buffer;
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+ decode(slice: CramSlice, coreDataBlock: CramFileBlock, blocksByContentId: Record<number, CramFileBlock>, cursors: Cursors): Buffer & WithArrayBufferLike<ArrayBufferLike>;
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+ _decodeByteArray(contentBlock: CramFileBlock, cursor: Cursor): Buffer & WithArrayBufferLike<ArrayBufferLike>;
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  }
package/dist/cramFile/slice/decodeRecord.js CHANGED
@@ -21,7 +21,9 @@ function readNullTerminatedString(buffer) {
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  */
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  function parseTagValueArray(buffer) {
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  const arrayType = String.fromCharCode(buffer[0]);
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- const length = Int32Array.from(buffer.slice(1))[0];
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+ const dataView = new DataView(buffer.buffer);
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+ const littleEndian = true;
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+ const length = dataView.getUint32(1, littleEndian);
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  const array = new Array(length);
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  buffer = buffer.slice(5);
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  if (arrayType === 'c') {
package/dist/cramFile/slice/decodeRecord.js.map CHANGED
@@ -1 +1 @@
1
- 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package/esm/cramFile/codecs/byteArrayStop.d.ts CHANGED
@@ -3,6 +3,6 @@ import CramSlice from '../slice';
3
3
  import { CramFileBlock } from '../file';
4
4
  import { ByteArrayStopCramEncoding } from '../encoding';
5
5
  export default class ByteArrayStopCodec extends CramCodec<'byteArray', ByteArrayStopCramEncoding['parameters']> {
6
- decode(slice: CramSlice, coreDataBlock: CramFileBlock, blocksByContentId: Record<number, CramFileBlock>, cursors: Cursors): Buffer;
7
- _decodeByteArray(contentBlock: CramFileBlock, cursor: Cursor): Buffer;
6
+ decode(slice: CramSlice, coreDataBlock: CramFileBlock, blocksByContentId: Record<number, CramFileBlock>, cursors: Cursors): Buffer & WithArrayBufferLike<ArrayBufferLike>;
7
+ _decodeByteArray(contentBlock: CramFileBlock, cursor: Cursor): Buffer & WithArrayBufferLike<ArrayBufferLike>;
8
8
  }
package/esm/cramFile/slice/decodeRecord.js CHANGED
@@ -18,7 +18,9 @@ function readNullTerminatedString(buffer) {
18
18
  */
19
19
  function parseTagValueArray(buffer) {
20
20
  const arrayType = String.fromCharCode(buffer[0]);
21
- const length = Int32Array.from(buffer.slice(1))[0];
21
+ const dataView = new DataView(buffer.buffer);
22
+ const littleEndian = true;
23
+ const length = dataView.getUint32(1, littleEndian);
22
24
  const array = new Array(length);
23
25
  buffer = buffer.slice(5);
24
26
  if (arrayType === 'c') {
package/esm/cramFile/slice/decodeRecord.js.map CHANGED
@@ -1 +1 @@
1
- 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package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@gmod/cram",
3
- "version": "3.0.5",
3
+ "version": "3.0.6",
4
4
  "description": "read CRAM files with pure Javascript",
5
5
  "license": "MIT",
6
6
  "repository": "GMOD/cram-js",
package/src/cramFile/slice/decodeRecord.ts CHANGED
@@ -32,7 +32,10 @@ function readNullTerminatedString(buffer: Uint8Array) {
32
32
  */
33
33
  function parseTagValueArray(buffer: Uint8Array) {
34
34
  const arrayType = String.fromCharCode(buffer[0]!)
35
- const length = Int32Array.from(buffer.slice(1))[0]!
35
+
36
+ const dataView = new DataView(buffer.buffer)
37
+ const littleEndian = true
38
+ const length = dataView.getUint32(1, littleEndian)
36
39
 
37
40
  const array: number[] = new Array(length)
38
41
  buffer = buffer.slice(5)