@gmod/cram 2.0.2 → 2.0.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +9 -0
- package/README.md +0 -4
- package/dist/craiIndex.js +1 -1
- package/dist/craiIndex.js.map +1 -1
- package/dist/cram-bundle.js +1 -1
- package/dist/cram-bundle.js.LICENSE.txt +0 -2
- package/dist/cramFile/codecs/byteArrayStop.d.ts +0 -1
- package/dist/cramFile/codecs/getBits.d.ts +0 -1
- package/dist/cramFile/codecs/getBits.js +2 -2
- package/dist/cramFile/codecs/getBits.js.map +1 -1
- package/dist/cramFile/codecs/index.js +1 -2
- package/dist/cramFile/codecs/index.js.map +1 -1
- package/dist/cramFile/container/index.d.ts +1 -2
- package/dist/cramFile/file.d.ts +1 -3
- package/dist/cramFile/file.js +2 -2
- package/dist/cramFile/file.js.map +1 -1
- package/dist/cramFile/sectionParsers.d.ts +0 -1
- package/dist/cramFile/sectionParsers.js +3 -3
- package/dist/cramFile/sectionParsers.js.map +1 -1
- package/dist/cramFile/slice/decodeRecord.js +1 -1
- package/dist/cramFile/slice/decodeRecord.js.map +1 -1
- package/dist/cramFile/util.d.ts +0 -2
- package/dist/cramFile/util.js +5 -6
- package/dist/cramFile/util.js.map +1 -1
- package/dist/indexedCramFile.d.ts +0 -3
- package/dist/indexedCramFile.js +4 -16
- package/dist/indexedCramFile.js.map +1 -1
- package/dist/io/index.d.ts +1 -3
- package/dist/io/index.js +3 -16
- package/dist/io/index.js.map +1 -1
- package/dist/rans/d04.js +1 -1
- package/dist/rans/d04.js.map +1 -1
- package/dist/rans/d14.js +1 -1
- package/dist/rans/d14.js.map +1 -1
- package/dist/rans/frequencies.js +2 -3
- package/dist/rans/frequencies.js.map +1 -1
- package/dist/rans/index.js +1 -1
- package/dist/rans/index.js.map +1 -1
- package/dist/sam.d.ts +1 -1
- package/dist/sam.js +3 -4
- package/dist/sam.js.map +1 -1
- package/dist/typescript.d.ts +0 -1
- package/dist/typescript.js +0 -8
- package/dist/typescript.js.map +1 -1
- package/dist/unzip-pako.d.ts +0 -1
- package/dist/unzip-pako.js +1 -2
- package/dist/unzip-pako.js.map +1 -1
- package/dist/unzip.d.ts +0 -1
- package/esm/craiIndex.js +1 -1
- package/esm/craiIndex.js.map +1 -1
- package/esm/cramFile/codecs/byteArrayStop.d.ts +0 -1
- package/esm/cramFile/codecs/getBits.d.ts +0 -1
- package/esm/cramFile/container/index.d.ts +1 -2
- package/esm/cramFile/file.d.ts +1 -3
- package/esm/cramFile/sectionParsers.d.ts +0 -1
- package/esm/cramFile/util.d.ts +0 -2
- package/esm/indexedCramFile.d.ts +0 -3
- package/esm/indexedCramFile.js +3 -15
- package/esm/indexedCramFile.js.map +1 -1
- package/esm/io/index.d.ts +1 -3
- package/esm/io/index.js +2 -11
- package/esm/io/index.js.map +1 -1
- package/esm/sam.d.ts +1 -1
- package/esm/sam.js +2 -2
- package/esm/sam.js.map +1 -1
- package/esm/typescript.d.ts +0 -1
- package/esm/typescript.js +1 -6
- package/esm/typescript.js.map +1 -1
- package/esm/unzip-pako.d.ts +0 -1
- package/esm/unzip.d.ts +0 -1
- package/package.json +5 -10
- package/src/craiIndex.ts +1 -1
- package/src/indexedCramFile.ts +3 -25
- package/src/io/index.ts +2 -12
- package/src/sam.ts +3 -3
- package/src/typescript.ts +0 -7
package/CHANGELOG.md
CHANGED
package/README.md
CHANGED
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@@ -344,10 +344,6 @@ that show insertions, deletions, substitutions, etc.
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- `args.cacheSize`
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**[number](https://developer.mozilla.org/docs/Web/JavaScript/Reference/Global_Objects/Number)?**
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optional maximum number of CRAM records to cache. default 20,000
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- `args.fetchSizeLimit`
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-
**[number](https://developer.mozilla.org/docs/Web/JavaScript/Reference/Global_Objects/Number)?**
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optional maximum number of bytes to fetch in a single getRecordsForRange
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call. Default 3 MiB.
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- `args.checkSequenceMD5`
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**[boolean](https://developer.mozilla.org/docs/Web/JavaScript/Reference/Global_Objects/Boolean)?**
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default true. if false, disables verifying the MD5 checksum of the reference
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package/dist/craiIndex.js
CHANGED
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@@ -12,7 +12,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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return (mod && mod.__esModule) ? mod : { "default": mod };
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};
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Object.defineProperty(exports, "__esModule", { value: true });
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-
const abortable_promise_cache_1 = __importDefault(require("abortable-promise-cache"));
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+
const abortable_promise_cache_1 = __importDefault(require("@gmod/abortable-promise-cache"));
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const quick_lru_1 = __importDefault(require("quick-lru"));
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const unzip_1 = require("./unzip");
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const io_1 = require("./io");
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package/dist/craiIndex.js.map
CHANGED
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"craiIndex.js","sourceRoot":"","sources":["../src/craiIndex.ts"],"names":[],"mappings":";;;;;;;;;;;;;;AAAA,
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1
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+
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